Multiple sequence alignment - TraesCS7D01G008500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G008500 chr7D 100.000 6369 0 0 1 6369 4030256 4023888 0.000000e+00 11762.0
1 TraesCS7D01G008500 chr7D 78.968 252 42 9 3745 3989 420742663 420742416 1.840000e-35 161.0
2 TraesCS7D01G008500 chr7D 78.017 232 44 5 3768 3992 34076872 34076641 8.610000e-29 139.0
3 TraesCS7D01G008500 chr7D 90.909 88 6 2 2629 2715 117234482 117234568 4.030000e-22 117.0
4 TraesCS7D01G008500 chr7D 98.413 63 1 0 2001 2063 4028191 4028253 1.880000e-20 111.0
5 TraesCS7D01G008500 chr4A 92.341 2546 111 38 2738 5228 739586150 739588666 0.000000e+00 3544.0
6 TraesCS7D01G008500 chr4A 89.516 992 66 22 1 971 739583653 739584627 0.000000e+00 1221.0
7 TraesCS7D01G008500 chr4A 88.499 1026 50 27 999 1998 739584610 739585593 0.000000e+00 1179.0
8 TraesCS7D01G008500 chr4A 93.818 550 28 2 2094 2637 739585594 739586143 0.000000e+00 822.0
9 TraesCS7D01G008500 chr4A 93.499 523 21 6 5850 6369 739589433 739589945 0.000000e+00 765.0
10 TraesCS7D01G008500 chr4A 93.493 292 19 0 5527 5818 739589143 739589434 9.810000e-118 435.0
11 TraesCS7D01G008500 chr4A 92.701 274 14 3 5222 5491 739588710 739588981 2.150000e-104 390.0
12 TraesCS7D01G008500 chr4A 78.205 234 40 8 3768 3992 691247057 691247288 8.610000e-29 139.0
13 TraesCS7D01G008500 chr4A 88.462 78 4 1 1994 2066 471931248 471931325 8.790000e-14 89.8
14 TraesCS7D01G008500 chr4A 88.462 78 4 1 1993 2065 559456590 559456667 8.790000e-14 89.8
15 TraesCS7D01G008500 chr4A 97.222 36 1 0 5143 5178 739588657 739588692 1.920000e-05 62.1
16 TraesCS7D01G008500 chr7A 88.536 2582 161 70 2956 5490 3860677 3858184 0.000000e+00 3003.0
17 TraesCS7D01G008500 chr7A 90.413 2034 106 34 1 1998 3863557 3861577 0.000000e+00 2593.0
18 TraesCS7D01G008500 chr7A 90.255 862 55 6 2094 2945 3861576 3860734 0.000000e+00 1099.0
19 TraesCS7D01G008500 chr7A 95.376 519 19 3 5853 6369 3857733 3857218 0.000000e+00 821.0
20 TraesCS7D01G008500 chr7A 93.559 295 15 2 5527 5821 3858022 3857732 2.730000e-118 436.0
21 TraesCS7D01G008500 chr7A 80.702 228 36 6 3769 3989 512328960 512329186 3.050000e-38 171.0
22 TraesCS7D01G008500 chr7A 100.000 29 0 0 2950 2978 3860716 3860688 3.000000e-03 54.7
23 TraesCS7D01G008500 chr6B 85.892 241 32 2 3762 4001 515577927 515578166 8.190000e-64 255.0
24 TraesCS7D01G008500 chr6A 85.656 244 33 2 3762 4004 447178897 447178655 8.190000e-64 255.0
25 TraesCS7D01G008500 chr6D 84.426 244 36 2 3762 4004 310888070 310887828 8.250000e-59 239.0
26 TraesCS7D01G008500 chr6D 91.111 90 7 1 2635 2724 93644400 93644488 3.120000e-23 121.0
27 TraesCS7D01G008500 chr6D 89.583 96 6 4 2632 2725 413410036 413410129 1.120000e-22 119.0
28 TraesCS7D01G008500 chr6D 88.660 97 7 4 2633 2727 1548752 1548846 1.450000e-21 115.0
29 TraesCS7D01G008500 chr7B 79.365 252 41 9 3745 3989 436787606 436787359 3.950000e-37 167.0
30 TraesCS7D01G008500 chr1D 92.473 93 7 0 2636 2728 372835839 372835747 4.010000e-27 134.0
31 TraesCS7D01G008500 chr1D 92.222 90 5 2 2633 2721 249030407 249030319 6.700000e-25 126.0
32 TraesCS7D01G008500 chr1D 89.130 92 9 1 2636 2727 484242461 484242371 5.220000e-21 113.0
33 TraesCS7D01G008500 chr1A 92.222 90 5 2 2633 2721 298603601 298603689 6.700000e-25 126.0
34 TraesCS7D01G008500 chr2A 89.873 79 3 1 1993 2066 569278893 569278815 5.260000e-16 97.1
35 TraesCS7D01G008500 chr2A 88.462 78 4 2 1994 2066 30572373 30572296 8.790000e-14 89.8
36 TraesCS7D01G008500 chr4B 88.462 78 4 1 1993 2065 58961638 58961561 8.790000e-14 89.8
37 TraesCS7D01G008500 chr4B 86.047 86 3 4 1989 2066 609410988 609411072 4.090000e-12 84.2
38 TraesCS7D01G008500 chr1B 88.158 76 5 1 1992 2063 486457659 486457584 3.160000e-13 87.9
39 TraesCS7D01G008500 chr3D 86.585 82 5 2 1990 2066 108916349 108916269 1.140000e-12 86.1
40 TraesCS7D01G008500 chr5D 80.519 77 15 0 3912 3988 519277588 519277664 6.900000e-05 60.2
41 TraesCS7D01G008500 chr5B 100.000 30 0 0 3959 3988 653432892 653432921 8.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G008500 chr7D 4023888 4030256 6368 True 11762.0000 11762 100.000000 1 6369 1 chr7D.!!$R1 6368
1 TraesCS7D01G008500 chr4A 739583653 739589945 6292 False 1052.2625 3544 92.636125 1 6369 8 chr4A.!!$F4 6368
2 TraesCS7D01G008500 chr7A 3857218 3863557 6339 True 1334.4500 3003 93.023167 1 6369 6 chr7A.!!$R1 6368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 506 0.529773 GTTGCGTATCCAGCCGATCA 60.530 55.0 0.00 0.00 31.92 2.92 F
1367 1397 0.252742 GGAAGGAGGTGGAGGAGGAA 60.253 60.0 0.00 0.00 0.00 3.36 F
1372 1402 0.539518 GAGGTGGAGGAGGAAGAAGC 59.460 60.0 0.00 0.00 0.00 3.86 F
3075 3210 0.599558 CCACAAGGTGCAATGAGTGG 59.400 55.0 13.19 13.19 40.32 4.00 F
3426 3581 0.323629 ATTGAACGGACGACATGGGT 59.676 50.0 0.00 0.00 0.00 4.51 F
4225 4394 0.322008 TGATGCGCCATGTTGGTACA 60.322 50.0 4.18 0.00 40.46 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1495 0.387202 ATCAAGGATCAGCTCGGTCG 59.613 55.000 0.00 0.00 0.00 4.79 R
3114 3249 0.942962 GCTGGAGGAAAGCATGATCG 59.057 55.000 0.00 0.00 40.52 3.69 R
3331 3468 2.353579 ACTGTGGCGTGTGAGTAAAAAC 59.646 45.455 0.00 0.00 0.00 2.43 R
4197 4366 0.035881 ATGGCGCATCATGGTCTAGG 59.964 55.000 10.83 0.00 0.00 3.02 R
4230 4399 1.224315 CATGAAGGGCCCATCGTCA 59.776 57.895 27.56 21.13 0.00 4.35 R
5829 6208 1.420430 TGGTTCTTTCCGGTCAGACT 58.580 50.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 5.412594 ACAATTGTCAATGCAGATAGTCGTT 59.587 36.000 4.92 0.00 0.00 3.85
74 78 4.926238 GCAGATAGTCGTTGATATTGGAGG 59.074 45.833 0.00 0.00 0.00 4.30
103 107 7.960738 AGTTAACGACGATATTTCCAAATGTTG 59.039 33.333 0.00 0.00 0.00 3.33
107 111 6.799925 ACGACGATATTTCCAAATGTTGTTTC 59.200 34.615 0.00 0.00 35.19 2.78
109 113 7.537306 CGACGATATTTCCAAATGTTGTTTCTT 59.463 33.333 3.85 0.00 35.19 2.52
110 114 8.519492 ACGATATTTCCAAATGTTGTTTCTTG 57.481 30.769 0.00 0.00 32.27 3.02
111 115 8.141268 ACGATATTTCCAAATGTTGTTTCTTGT 58.859 29.630 0.00 0.00 32.27 3.16
112 116 8.427012 CGATATTTCCAAATGTTGTTTCTTGTG 58.573 33.333 0.00 0.00 0.00 3.33
113 117 9.260002 GATATTTCCAAATGTTGTTTCTTGTGT 57.740 29.630 0.00 0.00 0.00 3.72
115 119 5.398603 TCCAAATGTTGTTTCTTGTGTGT 57.601 34.783 0.00 0.00 0.00 3.72
116 120 5.167121 TCCAAATGTTGTTTCTTGTGTGTG 58.833 37.500 0.00 0.00 0.00 3.82
117 121 4.928615 CCAAATGTTGTTTCTTGTGTGTGT 59.071 37.500 0.00 0.00 0.00 3.72
135 139 4.332819 GTGTGTGGGAAAGATAATTCGAGG 59.667 45.833 0.00 0.00 0.00 4.63
185 189 7.015682 AGCTAATTAAGAAAGGGATCTCGATCA 59.984 37.037 8.97 0.00 39.54 2.92
279 287 7.345653 TCACATGAGTATTTTGAGGGATCTACT 59.654 37.037 0.00 0.00 0.00 2.57
304 312 2.726555 CGAAAGCCGTTCTCATCATG 57.273 50.000 0.00 0.00 33.70 3.07
378 386 5.759059 TCGAAGTCCTACCCTTAAGATACA 58.241 41.667 3.36 0.00 0.00 2.29
406 415 7.012044 CCCCCAAATTCTTTTCATACTACGTAG 59.988 40.741 20.97 20.97 0.00 3.51
410 419 7.982371 AATTCTTTTCATACTACGTAGTCCG 57.018 36.000 30.53 21.74 43.93 4.79
421 434 4.706962 ACTACGTAGTCCGGTCCTAAAATT 59.293 41.667 22.45 0.00 43.93 1.82
449 462 7.517734 CGAGTTTCGAGATTTAACTTTGTCCAA 60.518 37.037 1.24 0.00 43.74 3.53
465 478 2.624364 GTCCAACGGTTAAACCCACAAT 59.376 45.455 0.00 0.00 33.75 2.71
470 483 6.374894 TCCAACGGTTAAACCCACAATATAAG 59.625 38.462 0.00 0.00 33.75 1.73
471 484 6.404954 CCAACGGTTAAACCCACAATATAAGG 60.405 42.308 0.00 0.00 33.75 2.69
487 500 2.516225 GGGGGTTGCGTATCCAGC 60.516 66.667 2.92 0.00 0.00 4.85
490 503 2.185867 GGTTGCGTATCCAGCCGA 59.814 61.111 0.00 0.00 0.00 5.54
493 506 0.529773 GTTGCGTATCCAGCCGATCA 60.530 55.000 0.00 0.00 31.92 2.92
501 514 0.828022 TCCAGCCGATCATACCGTTT 59.172 50.000 0.00 0.00 0.00 3.60
565 580 6.183360 TGCGGTATACATATACATAACCTCCG 60.183 42.308 5.01 0.00 40.16 4.63
568 583 7.469594 CGGTATACATATACATAACCTCCGCAT 60.470 40.741 5.01 0.00 40.16 4.73
573 588 8.718102 ACATATACATAACCTCCGCATTATTC 57.282 34.615 0.00 0.00 0.00 1.75
580 595 2.691526 ACCTCCGCATTATTCGACTACA 59.308 45.455 0.00 0.00 0.00 2.74
586 601 4.497507 CCGCATTATTCGACTACAGACTGA 60.498 45.833 10.08 0.00 0.00 3.41
624 639 4.282950 TCGAAATATACGAGCGACTTGT 57.717 40.909 0.00 5.31 34.85 3.16
637 652 2.091541 CGACTTGTGGTTTATGGCCAT 58.908 47.619 24.45 24.45 38.40 4.40
644 659 3.222603 GTGGTTTATGGCCATAGGAAGG 58.777 50.000 24.19 0.00 38.40 3.46
652 667 0.853530 GCCATAGGAAGGGGAATGGT 59.146 55.000 0.00 0.00 40.86 3.55
653 668 1.479389 GCCATAGGAAGGGGAATGGTG 60.479 57.143 0.00 0.00 40.86 4.17
752 767 1.827969 GAGGAGAGGAGCAGTAGCAAA 59.172 52.381 0.00 0.00 45.49 3.68
785 801 5.012046 GGGCTTTTGGAGGGATATTTTATGG 59.988 44.000 0.00 0.00 0.00 2.74
793 809 8.766994 TGGAGGGATATTTTATGGAAAGAAAG 57.233 34.615 0.00 0.00 0.00 2.62
796 812 9.408648 GAGGGATATTTTATGGAAAGAAAGTGA 57.591 33.333 0.00 0.00 0.00 3.41
949 975 2.823154 CGTCTTCTTCTTCTCCACCTCT 59.177 50.000 0.00 0.00 0.00 3.69
950 976 3.119637 CGTCTTCTTCTTCTCCACCTCTC 60.120 52.174 0.00 0.00 0.00 3.20
951 977 4.086457 GTCTTCTTCTTCTCCACCTCTCT 58.914 47.826 0.00 0.00 0.00 3.10
953 979 4.044065 TCTTCTTCTTCTCCACCTCTCTCT 59.956 45.833 0.00 0.00 0.00 3.10
956 982 3.644966 TCTTCTCCACCTCTCTCTCTC 57.355 52.381 0.00 0.00 0.00 3.20
957 983 3.189606 TCTTCTCCACCTCTCTCTCTCT 58.810 50.000 0.00 0.00 0.00 3.10
958 984 3.199946 TCTTCTCCACCTCTCTCTCTCTC 59.800 52.174 0.00 0.00 0.00 3.20
959 985 2.845659 TCTCCACCTCTCTCTCTCTCT 58.154 52.381 0.00 0.00 0.00 3.10
960 986 2.771943 TCTCCACCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
961 987 2.774234 CTCCACCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
962 988 2.771943 TCCACCTCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
963 989 2.774234 CCACCTCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
964 990 3.181461 CCACCTCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
965 991 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
966 992 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
967 993 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
968 994 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
969 995 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
970 996 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
971 997 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
972 998 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
973 999 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
974 1000 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
975 1001 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
976 1002 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
977 1003 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
978 1004 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
979 1005 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1287 1315 1.133792 CACTCTCTCTCCTCCTCCTCC 60.134 61.905 0.00 0.00 0.00 4.30
1288 1316 1.275002 ACTCTCTCTCCTCCTCCTCCT 60.275 57.143 0.00 0.00 0.00 3.69
1289 1317 1.421646 CTCTCTCTCCTCCTCCTCCTC 59.578 61.905 0.00 0.00 0.00 3.71
1301 1329 3.478274 CTCCTCTCCTGCAGCCCC 61.478 72.222 8.66 0.00 0.00 5.80
1304 1332 3.478274 CTCTCCTGCAGCCCCCTC 61.478 72.222 8.66 0.00 0.00 4.30
1316 1346 4.179599 CCCCTCCCCCTCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1318 1348 4.179599 CCTCCCCCTCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1351 1381 0.254178 GCTGAGCAGGATCAAGGGAA 59.746 55.000 0.00 0.00 0.00 3.97
1357 1387 1.589414 CAGGATCAAGGGAAGGAGGT 58.411 55.000 0.00 0.00 0.00 3.85
1367 1397 0.252742 GGAAGGAGGTGGAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
1372 1402 0.539518 GAGGTGGAGGAGGAAGAAGC 59.460 60.000 0.00 0.00 0.00 3.86
1432 1462 1.722852 GCAGATCGATCGACCGACG 60.723 63.158 22.06 6.08 41.70 5.12
1442 1473 2.844146 GACCGACGAACACTTGCG 59.156 61.111 0.00 0.00 0.00 4.85
1467 1498 2.296471 AGGCAGCAGGTATATGTACGAC 59.704 50.000 0.00 0.00 0.00 4.34
1476 1509 3.439476 GGTATATGTACGACCGAGCTGAT 59.561 47.826 0.00 0.00 0.00 2.90
1486 1519 1.137872 ACCGAGCTGATCCTTGATGAC 59.862 52.381 0.00 0.00 0.00 3.06
1503 1540 7.306167 CCTTGATGACGTTTTCTTTTTCATGTG 60.306 37.037 0.00 0.00 0.00 3.21
1524 1565 2.955660 GCTTCTGAGAGGAGCTAGCTAA 59.044 50.000 19.38 4.60 0.00 3.09
1573 1614 8.560374 GTTGCTCTTAGTTTGTCTTGTTATTCT 58.440 33.333 0.00 0.00 0.00 2.40
1583 1624 4.994852 TGTCTTGTTATTCTTCAAGGTCCG 59.005 41.667 0.00 0.00 40.67 4.79
1592 1633 2.158813 TCTTCAAGGTCCGTGAGCTTTT 60.159 45.455 13.42 0.00 46.28 2.27
1635 1689 3.345808 TTGTGCGCGTGCTCTTCC 61.346 61.111 23.16 5.45 43.34 3.46
1723 1780 2.481795 GCAGATCAGAGAGACAAGCCTC 60.482 54.545 0.00 0.00 0.00 4.70
1797 1854 8.434092 CTAGCTAGCTAGACAGATCTCTGGGT 62.434 50.000 37.99 5.84 46.56 4.51
1998 2068 4.445453 TGATCACAGATGCAACATACTCC 58.555 43.478 0.00 0.00 0.00 3.85
1999 2069 3.266510 TCACAGATGCAACATACTCCC 57.733 47.619 0.00 0.00 0.00 4.30
2000 2070 2.840038 TCACAGATGCAACATACTCCCT 59.160 45.455 0.00 0.00 0.00 4.20
2001 2071 3.118629 TCACAGATGCAACATACTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
2002 2072 3.110705 ACAGATGCAACATACTCCCTCT 58.889 45.455 0.00 0.00 0.00 3.69
2003 2073 3.118482 ACAGATGCAACATACTCCCTCTG 60.118 47.826 0.00 0.00 35.99 3.35
2004 2074 3.110705 AGATGCAACATACTCCCTCTGT 58.889 45.455 0.00 0.00 0.00 3.41
2005 2075 3.521126 AGATGCAACATACTCCCTCTGTT 59.479 43.478 0.00 0.00 33.55 3.16
2006 2076 3.334583 TGCAACATACTCCCTCTGTTC 57.665 47.619 0.00 0.00 30.99 3.18
2007 2077 2.027192 TGCAACATACTCCCTCTGTTCC 60.027 50.000 0.00 0.00 30.99 3.62
2008 2078 2.237392 GCAACATACTCCCTCTGTTCCT 59.763 50.000 0.00 0.00 30.99 3.36
2009 2079 3.451178 GCAACATACTCCCTCTGTTCCTA 59.549 47.826 0.00 0.00 30.99 2.94
2010 2080 4.081087 GCAACATACTCCCTCTGTTCCTAA 60.081 45.833 0.00 0.00 30.99 2.69
2011 2081 5.570844 GCAACATACTCCCTCTGTTCCTAAA 60.571 44.000 0.00 0.00 30.99 1.85
2012 2082 6.653989 CAACATACTCCCTCTGTTCCTAAAT 58.346 40.000 0.00 0.00 30.99 1.40
2013 2083 7.635089 GCAACATACTCCCTCTGTTCCTAAATA 60.635 40.741 0.00 0.00 30.99 1.40
2014 2084 8.432805 CAACATACTCCCTCTGTTCCTAAATAT 58.567 37.037 0.00 0.00 30.99 1.28
2015 2085 9.670442 AACATACTCCCTCTGTTCCTAAATATA 57.330 33.333 0.00 0.00 0.00 0.86
2016 2086 9.670442 ACATACTCCCTCTGTTCCTAAATATAA 57.330 33.333 0.00 0.00 0.00 0.98
2019 2089 8.252624 ACTCCCTCTGTTCCTAAATATAAGAC 57.747 38.462 0.00 0.00 0.00 3.01
2020 2090 7.014422 ACTCCCTCTGTTCCTAAATATAAGACG 59.986 40.741 0.00 0.00 0.00 4.18
2021 2091 6.837568 TCCCTCTGTTCCTAAATATAAGACGT 59.162 38.462 0.00 0.00 0.00 4.34
2022 2092 7.343833 TCCCTCTGTTCCTAAATATAAGACGTT 59.656 37.037 0.00 0.00 0.00 3.99
2023 2093 7.985752 CCCTCTGTTCCTAAATATAAGACGTTT 59.014 37.037 0.00 0.00 0.00 3.60
2024 2094 9.379791 CCTCTGTTCCTAAATATAAGACGTTTT 57.620 33.333 0.00 0.00 0.00 2.43
2026 2096 9.158233 TCTGTTCCTAAATATAAGACGTTTTGG 57.842 33.333 0.83 0.00 0.00 3.28
2027 2097 8.851541 TGTTCCTAAATATAAGACGTTTTGGT 57.148 30.769 0.83 0.00 32.19 3.67
2028 2098 9.941325 TGTTCCTAAATATAAGACGTTTTGGTA 57.059 29.630 0.83 0.00 32.19 3.25
2034 2104 8.761575 AAATATAAGACGTTTTGGTAGTTCGA 57.238 30.769 0.83 0.00 0.00 3.71
2035 2105 8.761575 AATATAAGACGTTTTGGTAGTTCGAA 57.238 30.769 0.83 0.00 0.00 3.71
2036 2106 4.783959 AAGACGTTTTGGTAGTTCGAAC 57.216 40.909 20.71 20.71 0.00 3.95
2037 2107 4.050852 AGACGTTTTGGTAGTTCGAACT 57.949 40.909 31.70 31.70 42.91 3.01
2038 2108 5.186996 AGACGTTTTGGTAGTTCGAACTA 57.813 39.130 29.57 29.57 40.37 2.24
2049 2119 4.050852 AGTTCGAACTACCAAAACGTCT 57.949 40.909 28.80 0.20 37.52 4.18
2050 2120 4.436332 AGTTCGAACTACCAAAACGTCTT 58.564 39.130 28.80 0.00 37.52 3.01
2051 2121 5.591099 AGTTCGAACTACCAAAACGTCTTA 58.409 37.500 28.80 0.00 37.52 2.10
2052 2122 6.218746 AGTTCGAACTACCAAAACGTCTTAT 58.781 36.000 28.80 0.00 37.52 1.73
2053 2123 7.370383 AGTTCGAACTACCAAAACGTCTTATA 58.630 34.615 28.80 0.00 37.52 0.98
2054 2124 8.031277 AGTTCGAACTACCAAAACGTCTTATAT 58.969 33.333 28.80 0.00 37.52 0.86
2055 2125 8.650714 GTTCGAACTACCAAAACGTCTTATATT 58.349 33.333 20.97 0.00 0.00 1.28
2056 2126 8.761575 TCGAACTACCAAAACGTCTTATATTT 57.238 30.769 0.00 0.00 0.00 1.40
2057 2127 9.853555 TCGAACTACCAAAACGTCTTATATTTA 57.146 29.630 0.00 0.00 0.00 1.40
2063 2133 7.967178 ACCAAAACGTCTTATATTTAGGAACG 58.033 34.615 0.00 0.00 0.00 3.95
2064 2134 7.064966 ACCAAAACGTCTTATATTTAGGAACGG 59.935 37.037 0.00 0.00 0.00 4.44
2065 2135 7.278424 CCAAAACGTCTTATATTTAGGAACGGA 59.722 37.037 0.00 0.00 0.00 4.69
2066 2136 8.658609 CAAAACGTCTTATATTTAGGAACGGAA 58.341 33.333 0.00 0.00 0.00 4.30
2067 2137 7.761651 AACGTCTTATATTTAGGAACGGAAC 57.238 36.000 0.00 0.00 0.00 3.62
2087 2157 6.831769 GGAACGTCTTATATATACGAACGGA 58.168 40.000 19.36 0.00 39.80 4.69
2088 2158 6.958193 GGAACGTCTTATATATACGAACGGAG 59.042 42.308 19.36 0.00 39.80 4.63
2089 2159 6.414408 ACGTCTTATATATACGAACGGAGG 57.586 41.667 19.36 4.38 39.80 4.30
2090 2160 5.352569 ACGTCTTATATATACGAACGGAGGG 59.647 44.000 19.36 0.00 39.80 4.30
2091 2161 5.582269 CGTCTTATATATACGAACGGAGGGA 59.418 44.000 10.96 0.00 38.89 4.20
2092 2162 6.238049 CGTCTTATATATACGAACGGAGGGAG 60.238 46.154 10.96 0.00 38.89 4.30
2106 2176 5.254901 ACGGAGGGAGTATATTACTAGCAG 58.745 45.833 0.00 0.00 39.59 4.24
2162 2232 6.644248 TGATTGCATCTTCTTCAATATGGG 57.356 37.500 0.00 0.00 31.30 4.00
2174 2244 8.537728 TTCTTCAATATGGGCTTATCATTTGT 57.462 30.769 0.00 0.00 0.00 2.83
2175 2245 8.169977 TCTTCAATATGGGCTTATCATTTGTC 57.830 34.615 0.00 0.00 0.00 3.18
2192 2262 8.415192 TCATTTGTCGAAACCTATATGTACAC 57.585 34.615 0.00 0.00 0.00 2.90
2238 2308 4.330074 ACGAAATCCAAGTTCAATCTAGCG 59.670 41.667 0.00 0.00 0.00 4.26
2330 2400 5.046376 CACCTTTTATTTTCAGCTCCCCAAT 60.046 40.000 0.00 0.00 0.00 3.16
2366 2436 7.872993 TGTTTGTGTGTTTTATTTTCTTGTGGA 59.127 29.630 0.00 0.00 0.00 4.02
2379 2449 7.451731 TTTTCTTGTGGAGGATGGATATAGT 57.548 36.000 0.00 0.00 0.00 2.12
2380 2450 6.425210 TTCTTGTGGAGGATGGATATAGTG 57.575 41.667 0.00 0.00 0.00 2.74
2381 2451 4.284490 TCTTGTGGAGGATGGATATAGTGC 59.716 45.833 0.00 0.00 0.00 4.40
2393 2473 6.156748 TGGATATAGTGCGTCTGTATGTTT 57.843 37.500 3.53 0.00 32.04 2.83
2432 2512 7.775120 AGAATGGATATGATGTGTTTTGTTCC 58.225 34.615 0.00 0.00 0.00 3.62
2453 2533 6.286240 TCCGCTACATAATCTATGCTTGAT 57.714 37.500 0.00 0.00 39.79 2.57
2646 2728 4.140853 TGAGTAAGGATATACCCCTTCCGT 60.141 45.833 10.57 0.00 42.63 4.69
2656 2738 3.012934 ACCCCTTCCGTTCCATAATTG 57.987 47.619 0.00 0.00 0.00 2.32
2662 2744 4.436852 CCTTCCGTTCCATAATTGTTGTCG 60.437 45.833 0.00 0.00 0.00 4.35
2664 2746 3.433957 TCCGTTCCATAATTGTTGTCGTG 59.566 43.478 0.00 0.00 0.00 4.35
2711 2793 5.371115 ACCACAACAAGAATTATGGAACG 57.629 39.130 0.00 0.00 0.00 3.95
2760 2842 2.491298 TGCACATGACCATGCGTATTTT 59.509 40.909 9.70 0.00 45.13 1.82
2766 2848 6.251163 CACATGACCATGCGTATTTTTACTTG 59.749 38.462 9.70 0.00 42.39 3.16
2867 2954 1.917273 GCATAAAGCATGTGCACCAG 58.083 50.000 15.69 7.88 44.81 4.00
2917 3004 3.238232 GCATGAGCACCTTGACTGA 57.762 52.632 0.00 0.00 41.58 3.41
2980 3114 8.786826 ATACAAGTGCAAATACAAGTAGCTAA 57.213 30.769 0.00 0.00 0.00 3.09
2986 3120 8.478877 AGTGCAAATACAAGTAGCTAACTAGAT 58.521 33.333 0.00 0.00 37.50 1.98
3075 3210 0.599558 CCACAAGGTGCAATGAGTGG 59.400 55.000 13.19 13.19 40.32 4.00
3084 3219 1.364626 GCAATGAGTGGTGCCTCTCG 61.365 60.000 13.51 3.58 38.84 4.04
3114 3249 2.095768 AGTATGCATGCGTCACACAAAC 60.096 45.455 17.45 7.16 0.00 2.93
3127 3262 3.058293 TCACACAAACGATCATGCTTTCC 60.058 43.478 0.00 0.00 0.00 3.13
3128 3263 3.058016 CACACAAACGATCATGCTTTCCT 60.058 43.478 0.00 0.00 0.00 3.36
3296 3433 6.183361 TGGGCAATATGTTTCCTGATCTGATA 60.183 38.462 0.38 0.00 0.00 2.15
3304 3441 8.985315 ATGTTTCCTGATCTGATATTTTGCTA 57.015 30.769 0.38 0.00 0.00 3.49
3388 3543 2.715737 TTTCCGTACATTTTGCAGGC 57.284 45.000 0.00 0.00 0.00 4.85
3389 3544 1.610363 TTCCGTACATTTTGCAGGCA 58.390 45.000 0.00 0.00 0.00 4.75
3403 3558 3.925379 TGCAGGCATAGTTATACATCGG 58.075 45.455 0.00 0.00 0.00 4.18
3406 3561 4.560716 GCAGGCATAGTTATACATCGGTCA 60.561 45.833 0.00 0.00 0.00 4.02
3411 3566 6.649141 GGCATAGTTATACATCGGTCAATTGA 59.351 38.462 3.38 3.38 0.00 2.57
3426 3581 0.323629 ATTGAACGGACGACATGGGT 59.676 50.000 0.00 0.00 0.00 4.51
3602 3759 9.823647 GGATCTCCAAGGTATATACATTACATG 57.176 37.037 12.13 1.74 35.64 3.21
3691 3848 3.995048 GACAACTTAGTGTAGCCTTGACC 59.005 47.826 0.00 0.00 0.00 4.02
3815 3984 2.005370 AGGACAAGAAGTACCCGACA 57.995 50.000 0.00 0.00 0.00 4.35
3863 4032 2.033194 GGGTTTCTGGAAGGCGACG 61.033 63.158 0.00 0.00 0.00 5.12
3875 4044 4.011517 GCGACGGGGAGGGACAAA 62.012 66.667 0.00 0.00 0.00 2.83
3962 4131 0.740737 CCAATGGCCAGAAATCCGAC 59.259 55.000 13.05 0.00 0.00 4.79
4029 4198 6.565249 CCTCCACAGGCAAGCTATAGCTATA 61.565 48.000 27.11 12.84 41.40 1.31
4030 4199 8.297290 CCTCCACAGGCAAGCTATAGCTATAG 62.297 50.000 29.18 29.18 41.40 1.31
4093 4262 5.606505 TCGCATACATATAAACCTGCAAGA 58.393 37.500 0.00 0.00 34.07 3.02
4095 4264 6.147656 TCGCATACATATAAACCTGCAAGATG 59.852 38.462 0.00 0.00 34.07 2.90
4106 4275 3.944015 ACCTGCAAGATGCTCTACAAATC 59.056 43.478 3.78 0.00 45.31 2.17
4109 4278 5.300969 TGCAAGATGCTCTACAAATCAAC 57.699 39.130 3.78 0.00 45.31 3.18
4182 4351 4.597507 AGGGTGTTCAAGAAGAGATTACCA 59.402 41.667 0.00 0.00 0.00 3.25
4194 4363 6.712547 AGAAGAGATTACCAACAACAAGAAGG 59.287 38.462 0.00 0.00 0.00 3.46
4197 4366 5.070685 AGATTACCAACAACAAGAAGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
4218 4387 0.469494 TAGACCATGATGCGCCATGT 59.531 50.000 20.53 11.63 41.65 3.21
4225 4394 0.322008 TGATGCGCCATGTTGGTACA 60.322 50.000 4.18 0.00 40.46 2.90
4230 4399 1.581934 CGCCATGTTGGTACATCGAT 58.418 50.000 0.00 0.00 43.07 3.59
4233 4402 2.287915 GCCATGTTGGTACATCGATGAC 59.712 50.000 31.33 22.06 43.07 3.06
4533 4702 3.050275 GACGACCAAGCTGCCACC 61.050 66.667 0.00 0.00 0.00 4.61
4578 4747 2.175566 GTCGCGTCTCAGCTTAGTAAC 58.824 52.381 5.77 0.00 34.40 2.50
4584 4753 2.784380 GTCTCAGCTTAGTAACGATGCG 59.216 50.000 0.00 0.00 0.00 4.73
4720 4889 1.077930 AAGTGATGAGCAGCGGCAT 60.078 52.632 12.44 3.75 44.61 4.40
4725 4894 0.040336 GATGAGCAGCGGCATCAATG 60.040 55.000 20.13 0.00 44.61 2.82
5050 5219 6.721321 GTTGGTCTTTCAACGAACTTGATAA 58.279 36.000 0.00 0.00 38.74 1.75
5051 5220 7.360361 GTTGGTCTTTCAACGAACTTGATAAT 58.640 34.615 0.00 0.00 38.74 1.28
5052 5221 6.898041 TGGTCTTTCAACGAACTTGATAATG 58.102 36.000 0.00 0.00 38.74 1.90
5093 5267 6.472486 CCAATATATATGCTCGAACACCGTAG 59.528 42.308 0.00 0.00 39.75 3.51
5098 5272 1.208358 CTCGAACACCGTAGCGACA 59.792 57.895 0.00 0.00 39.75 4.35
5107 5281 0.867753 CCGTAGCGACAGTGCTCATC 60.868 60.000 0.00 0.00 45.87 2.92
5120 5294 7.253917 CGACAGTGCTCATCTTTATAACAAGAG 60.254 40.741 0.00 0.00 36.22 2.85
5143 5317 8.184192 AGAGATTTATTTCTACATTTGTTGCCG 58.816 33.333 0.00 0.00 0.00 5.69
5144 5318 7.826690 AGATTTATTTCTACATTTGTTGCCGT 58.173 30.769 0.00 0.00 0.00 5.68
5181 5416 8.706322 TTATACTCATAGCCTTACATGTCAGA 57.294 34.615 8.66 0.00 0.00 3.27
5212 5447 6.655078 AAAATTCAGCAGACTTAACCATGT 57.345 33.333 0.00 0.00 0.00 3.21
5214 5449 6.743575 AATTCAGCAGACTTAACCATGTAC 57.256 37.500 0.00 0.00 0.00 2.90
5215 5450 4.882842 TCAGCAGACTTAACCATGTACA 57.117 40.909 0.00 0.00 0.00 2.90
5216 5451 4.820897 TCAGCAGACTTAACCATGTACAG 58.179 43.478 0.33 0.00 0.00 2.74
5217 5452 4.526650 TCAGCAGACTTAACCATGTACAGA 59.473 41.667 0.33 0.00 0.00 3.41
5218 5453 4.627467 CAGCAGACTTAACCATGTACAGAC 59.373 45.833 0.33 0.00 0.00 3.51
5219 5454 3.612860 GCAGACTTAACCATGTACAGACG 59.387 47.826 0.33 0.00 0.00 4.18
5220 5455 3.612860 CAGACTTAACCATGTACAGACGC 59.387 47.826 0.33 0.00 0.00 5.19
5230 5478 5.360144 ACCATGTACAGACGCTAAGAAGTAT 59.640 40.000 0.33 0.00 0.00 2.12
5240 5488 9.035607 CAGACGCTAAGAAGTATAAATGACAAT 57.964 33.333 0.00 0.00 0.00 2.71
5242 5490 7.630924 ACGCTAAGAAGTATAAATGACAATGC 58.369 34.615 0.00 0.00 0.00 3.56
5255 5503 3.264947 TGACAATGCGAAGATCTTCCAG 58.735 45.455 26.08 15.93 36.27 3.86
5260 5508 5.882557 ACAATGCGAAGATCTTCCAGTTAAT 59.117 36.000 26.08 10.45 36.27 1.40
5261 5509 6.037610 ACAATGCGAAGATCTTCCAGTTAATC 59.962 38.462 26.08 2.79 36.27 1.75
5393 5645 2.630889 TCATTCTCCCTCTGTGGTCT 57.369 50.000 0.00 0.00 0.00 3.85
5410 5662 1.211457 GTCTGAAGGGTGAGCCATCAT 59.789 52.381 9.17 0.00 37.87 2.45
5491 5743 3.844640 ACAGAAAACAAAGGGCTATGGT 58.155 40.909 0.00 0.00 0.00 3.55
5494 5746 6.727394 ACAGAAAACAAAGGGCTATGGTATA 58.273 36.000 0.00 0.00 0.00 1.47
5495 5747 7.354312 ACAGAAAACAAAGGGCTATGGTATAT 58.646 34.615 0.00 0.00 0.00 0.86
5497 5749 9.520515 CAGAAAACAAAGGGCTATGGTATATAT 57.479 33.333 0.00 0.00 0.00 0.86
5608 5987 5.144100 ACAGGCTATGTTCTACTCTGCTAT 58.856 41.667 0.00 0.00 39.96 2.97
5613 5992 6.329496 GCTATGTTCTACTCTGCTATGATCC 58.671 44.000 0.00 0.00 0.00 3.36
5671 6050 4.034975 GCATTCTCTATGTCAAAGTCCTGC 59.965 45.833 0.00 0.00 36.57 4.85
5689 6068 5.064452 GTCCTGCAATAACTCACAGAATCAG 59.936 44.000 0.00 0.00 31.67 2.90
5691 6070 3.371898 TGCAATAACTCACAGAATCAGCG 59.628 43.478 0.00 0.00 0.00 5.18
5759 6138 3.628032 TGACGCCAAAAACATGTAGACAA 59.372 39.130 0.00 0.00 0.00 3.18
5769 6148 8.798153 CAAAAACATGTAGACAACAGAAAACTC 58.202 33.333 0.00 0.00 42.70 3.01
5818 6197 6.691754 TGAGTAGTCTCAGAGCAGAATAAG 57.308 41.667 0.00 0.00 44.58 1.73
5819 6198 6.418946 TGAGTAGTCTCAGAGCAGAATAAGA 58.581 40.000 0.00 0.00 44.58 2.10
5820 6199 6.887002 TGAGTAGTCTCAGAGCAGAATAAGAA 59.113 38.462 0.00 0.00 44.58 2.52
5821 6200 7.394641 TGAGTAGTCTCAGAGCAGAATAAGAAA 59.605 37.037 0.00 0.00 44.58 2.52
5822 6201 8.128322 AGTAGTCTCAGAGCAGAATAAGAAAA 57.872 34.615 0.00 0.00 0.00 2.29
5823 6202 8.757877 AGTAGTCTCAGAGCAGAATAAGAAAAT 58.242 33.333 0.00 0.00 0.00 1.82
5824 6203 9.377312 GTAGTCTCAGAGCAGAATAAGAAAATT 57.623 33.333 0.00 0.00 0.00 1.82
5825 6204 8.860780 AGTCTCAGAGCAGAATAAGAAAATTT 57.139 30.769 0.00 0.00 0.00 1.82
5826 6205 9.950496 AGTCTCAGAGCAGAATAAGAAAATTTA 57.050 29.630 0.00 0.00 0.00 1.40
5839 6218 9.908152 AATAAGAAAATTTAAAAGTCTGACCGG 57.092 29.630 0.00 0.00 0.00 5.28
5840 6219 7.576861 AAGAAAATTTAAAAGTCTGACCGGA 57.423 32.000 9.46 0.00 0.00 5.14
5841 6220 7.576861 AGAAAATTTAAAAGTCTGACCGGAA 57.423 32.000 9.46 0.00 0.00 4.30
5842 6221 8.002984 AGAAAATTTAAAAGTCTGACCGGAAA 57.997 30.769 9.46 0.00 0.00 3.13
5843 6222 8.135529 AGAAAATTTAAAAGTCTGACCGGAAAG 58.864 33.333 9.46 4.91 0.00 2.62
5844 6223 7.576861 AAATTTAAAAGTCTGACCGGAAAGA 57.423 32.000 9.46 7.73 0.00 2.52
5845 6224 7.576861 AATTTAAAAGTCTGACCGGAAAGAA 57.423 32.000 9.46 0.00 0.00 2.52
5846 6225 5.996669 TTAAAAGTCTGACCGGAAAGAAC 57.003 39.130 9.46 5.65 0.00 3.01
5847 6226 2.545537 AAGTCTGACCGGAAAGAACC 57.454 50.000 9.46 0.00 0.00 3.62
5848 6227 1.420430 AGTCTGACCGGAAAGAACCA 58.580 50.000 9.46 0.00 0.00 3.67
5849 6228 1.766496 AGTCTGACCGGAAAGAACCAA 59.234 47.619 9.46 0.00 0.00 3.67
5850 6229 2.171870 AGTCTGACCGGAAAGAACCAAA 59.828 45.455 9.46 0.00 0.00 3.28
5851 6230 2.289820 GTCTGACCGGAAAGAACCAAAC 59.710 50.000 9.46 0.00 0.00 2.93
5871 6250 5.751243 AACAACTTAGATCAACAAAGCGT 57.249 34.783 0.00 0.00 0.00 5.07
5876 6257 8.349983 ACAACTTAGATCAACAAAGCGTTTAAT 58.650 29.630 0.00 0.00 34.86 1.40
5919 6300 2.151202 GGAGAAGAAAACCGACATGCA 58.849 47.619 0.00 0.00 0.00 3.96
5920 6301 2.749621 GGAGAAGAAAACCGACATGCAT 59.250 45.455 0.00 0.00 0.00 3.96
5960 6341 3.165058 TCATGATACAGAACAGTCCGC 57.835 47.619 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.712004 TCTGCATTGACAATTGTTGGTATG 58.288 37.500 13.36 13.78 34.12 2.39
63 67 4.873827 GTCGTTAACTTGCCTCCAATATCA 59.126 41.667 3.71 0.00 0.00 2.15
74 78 5.459110 TGGAAATATCGTCGTTAACTTGC 57.541 39.130 3.71 0.00 0.00 4.01
103 107 3.442273 TCTTTCCCACACACACAAGAAAC 59.558 43.478 0.00 0.00 0.00 2.78
107 111 5.964958 ATTATCTTTCCCACACACACAAG 57.035 39.130 0.00 0.00 0.00 3.16
109 113 4.454161 CGAATTATCTTTCCCACACACACA 59.546 41.667 0.00 0.00 0.00 3.72
110 114 4.693566 TCGAATTATCTTTCCCACACACAC 59.306 41.667 0.00 0.00 0.00 3.82
111 115 4.900684 TCGAATTATCTTTCCCACACACA 58.099 39.130 0.00 0.00 0.00 3.72
112 116 4.332819 CCTCGAATTATCTTTCCCACACAC 59.667 45.833 0.00 0.00 0.00 3.82
113 117 4.513442 CCTCGAATTATCTTTCCCACACA 58.487 43.478 0.00 0.00 0.00 3.72
115 119 3.541632 GCCTCGAATTATCTTTCCCACA 58.458 45.455 0.00 0.00 0.00 4.17
116 120 2.544267 CGCCTCGAATTATCTTTCCCAC 59.456 50.000 0.00 0.00 0.00 4.61
117 121 2.169769 ACGCCTCGAATTATCTTTCCCA 59.830 45.455 0.00 0.00 0.00 4.37
135 139 4.803613 AGATCTTTTGTTTGAAACCAACGC 59.196 37.500 5.50 0.00 0.00 4.84
185 189 1.159098 TGTTTTCGCGCCTTTACCGT 61.159 50.000 0.00 0.00 0.00 4.83
402 411 3.451526 GGAATTTTAGGACCGGACTACG 58.548 50.000 9.46 0.00 43.80 3.51
406 415 2.093816 ACTCGGAATTTTAGGACCGGAC 60.094 50.000 9.46 0.00 44.57 4.79
410 419 4.248058 TCGAAACTCGGAATTTTAGGACC 58.752 43.478 0.00 0.00 40.88 4.46
421 434 5.987347 ACAAAGTTAAATCTCGAAACTCGGA 59.013 36.000 0.17 0.00 40.88 4.55
449 462 5.195185 CCCTTATATTGTGGGTTTAACCGT 58.805 41.667 8.14 0.00 39.83 4.83
465 478 2.635915 CTGGATACGCAACCCCCTTATA 59.364 50.000 0.00 0.00 42.51 0.98
470 483 2.516225 GCTGGATACGCAACCCCC 60.516 66.667 0.00 0.00 42.51 5.40
471 484 2.516225 GGCTGGATACGCAACCCC 60.516 66.667 0.00 0.00 42.51 4.95
487 500 7.642586 GGAAGAAATTTAAAACGGTATGATCGG 59.357 37.037 0.00 0.00 0.00 4.18
493 506 8.931775 GCATTTGGAAGAAATTTAAAACGGTAT 58.068 29.630 0.00 0.00 0.00 2.73
516 529 8.492748 GCAAAATTTGAATCATCGAATATGCAT 58.507 29.630 10.26 3.79 43.53 3.96
553 566 5.010314 AGTCGAATAATGCGGAGGTTATGTA 59.990 40.000 0.00 0.00 0.00 2.29
565 580 5.403766 CCATCAGTCTGTAGTCGAATAATGC 59.596 44.000 0.00 0.00 0.00 3.56
568 583 5.650703 TCACCATCAGTCTGTAGTCGAATAA 59.349 40.000 0.00 0.00 0.00 1.40
570 585 4.017126 TCACCATCAGTCTGTAGTCGAAT 58.983 43.478 0.00 0.00 0.00 3.34
573 588 3.850122 TTCACCATCAGTCTGTAGTCG 57.150 47.619 0.00 0.00 0.00 4.18
580 595 5.874093 AGATTCAACTTTCACCATCAGTCT 58.126 37.500 0.00 0.00 0.00 3.24
586 601 6.824305 ATTTCGAGATTCAACTTTCACCAT 57.176 33.333 0.00 0.00 0.00 3.55
619 634 3.268334 TCCTATGGCCATAAACCACAAGT 59.732 43.478 25.38 0.00 40.82 3.16
621 636 4.277476 CTTCCTATGGCCATAAACCACAA 58.723 43.478 25.38 10.98 40.82 3.33
623 638 3.222603 CCTTCCTATGGCCATAAACCAC 58.777 50.000 25.38 0.00 40.82 4.16
624 639 2.176798 CCCTTCCTATGGCCATAAACCA 59.823 50.000 25.38 5.92 42.61 3.67
637 652 2.408565 CTAGCACCATTCCCCTTCCTA 58.591 52.381 0.00 0.00 0.00 2.94
644 659 5.163395 GGATACTATAGCTAGCACCATTCCC 60.163 48.000 18.83 5.22 0.00 3.97
652 667 6.249192 AGTGTGATGGATACTATAGCTAGCA 58.751 40.000 18.83 3.19 37.61 3.49
653 668 6.767524 AGTGTGATGGATACTATAGCTAGC 57.232 41.667 6.62 6.62 37.61 3.42
752 767 1.279846 CTCCAAAAGCCCAATGCCAAT 59.720 47.619 0.00 0.00 42.71 3.16
785 801 4.893524 TCCCCTCCTTTTTCACTTTCTTTC 59.106 41.667 0.00 0.00 0.00 2.62
793 809 3.448660 CCATCATTCCCCTCCTTTTTCAC 59.551 47.826 0.00 0.00 0.00 3.18
796 812 2.470990 GCCATCATTCCCCTCCTTTTT 58.529 47.619 0.00 0.00 0.00 1.94
949 975 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
950 976 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
951 977 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
953 979 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
956 982 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
957 983 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
958 984 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
959 985 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
960 986 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
961 987 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
962 988 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
963 989 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
964 990 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
965 991 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
966 992 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
967 993 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
968 994 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
969 995 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
970 996 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
971 997 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
972 998 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
973 999 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
974 1000 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
975 1001 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
976 1002 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
977 1003 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
978 1004 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
979 1005 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1127 1154 0.253044 CAGGCAGGCAGCTAAAGGTA 59.747 55.000 0.81 0.00 44.79 3.08
1128 1155 1.001641 CAGGCAGGCAGCTAAAGGT 60.002 57.895 0.81 0.00 44.79 3.50
1129 1156 1.001641 ACAGGCAGGCAGCTAAAGG 60.002 57.895 0.81 0.00 44.79 3.11
1287 1315 3.478274 GAGGGGGCTGCAGGAGAG 61.478 72.222 17.12 0.00 0.00 3.20
1301 1329 4.179599 GGGGAGGAGAGGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1331 1361 1.523258 CCCTTGATCCTGCTCAGCG 60.523 63.158 0.00 0.00 0.00 5.18
1351 1381 0.793617 TTCTTCCTCCTCCACCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
1357 1387 0.837691 TGCTGCTTCTTCCTCCTCCA 60.838 55.000 0.00 0.00 0.00 3.86
1367 1397 0.886563 GATTGTTGGCTGCTGCTTCT 59.113 50.000 15.64 0.00 39.59 2.85
1372 1402 1.214589 GGCTGATTGTTGGCTGCTG 59.785 57.895 0.00 0.00 0.00 4.41
1432 1462 1.639298 CTGCCTAGCCGCAAGTGTTC 61.639 60.000 0.00 0.00 38.56 3.18
1436 1466 3.965539 CTGCTGCCTAGCCGCAAGT 62.966 63.158 7.10 0.00 46.79 3.16
1461 1492 0.739561 AAGGATCAGCTCGGTCGTAC 59.260 55.000 0.00 0.00 0.00 3.67
1463 1494 0.965866 TCAAGGATCAGCTCGGTCGT 60.966 55.000 0.00 0.00 0.00 4.34
1464 1495 0.387202 ATCAAGGATCAGCTCGGTCG 59.613 55.000 0.00 0.00 0.00 4.79
1467 1498 1.863267 GTCATCAAGGATCAGCTCGG 58.137 55.000 0.00 0.00 0.00 4.63
1476 1509 6.443934 TGAAAAAGAAAACGTCATCAAGGA 57.556 33.333 0.00 0.00 0.00 3.36
1486 1519 5.743398 TCAGAAGCACATGAAAAAGAAAACG 59.257 36.000 0.00 0.00 0.00 3.60
1503 1540 1.402787 AGCTAGCTCCTCTCAGAAGC 58.597 55.000 12.68 0.00 0.00 3.86
1524 1565 5.840149 ACAAGAGATGAGGATGAATCTAGCT 59.160 40.000 0.00 0.00 33.26 3.32
1536 1577 5.083533 ACTAAGAGCAACAAGAGATGAGG 57.916 43.478 0.00 0.00 0.00 3.86
1541 1582 5.918608 AGACAAACTAAGAGCAACAAGAGA 58.081 37.500 0.00 0.00 0.00 3.10
1573 1614 2.341846 AAAAGCTCACGGACCTTGAA 57.658 45.000 1.87 0.00 0.00 2.69
1583 1624 5.807011 ACAAACAACATCAGAAAAAGCTCAC 59.193 36.000 0.00 0.00 0.00 3.51
1592 1633 8.031864 ACACAACAATAACAAACAACATCAGAA 58.968 29.630 0.00 0.00 0.00 3.02
1723 1780 2.417933 CAGGGATGAGCTTTTTGTCTCG 59.582 50.000 0.00 0.00 32.20 4.04
1784 1841 5.544176 TGTAGAAAGAAACCCAGAGATCTGT 59.456 40.000 0.00 0.00 42.27 3.41
1797 1854 5.468746 CGTGATGGAACCTTGTAGAAAGAAA 59.531 40.000 0.00 0.00 0.00 2.52
1998 2068 8.943909 AAACGTCTTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2000 2070 9.158233 CCAAAACGTCTTATATTTAGGAACAGA 57.842 33.333 0.00 0.00 0.00 3.41
2001 2071 8.943002 ACCAAAACGTCTTATATTTAGGAACAG 58.057 33.333 0.00 0.00 0.00 3.16
2002 2072 8.851541 ACCAAAACGTCTTATATTTAGGAACA 57.148 30.769 0.00 0.00 0.00 3.18
2008 2078 9.853555 TCGAACTACCAAAACGTCTTATATTTA 57.146 29.630 0.00 0.00 0.00 1.40
2009 2079 8.761575 TCGAACTACCAAAACGTCTTATATTT 57.238 30.769 0.00 0.00 0.00 1.40
2010 2080 8.650714 GTTCGAACTACCAAAACGTCTTATATT 58.349 33.333 20.97 0.00 0.00 1.28
2011 2081 8.031277 AGTTCGAACTACCAAAACGTCTTATAT 58.969 33.333 28.80 0.00 37.52 0.86
2012 2082 7.370383 AGTTCGAACTACCAAAACGTCTTATA 58.630 34.615 28.80 0.00 37.52 0.98
2013 2083 6.218746 AGTTCGAACTACCAAAACGTCTTAT 58.781 36.000 28.80 0.00 37.52 1.73
2014 2084 5.591099 AGTTCGAACTACCAAAACGTCTTA 58.409 37.500 28.80 0.00 37.52 2.10
2015 2085 4.436332 AGTTCGAACTACCAAAACGTCTT 58.564 39.130 28.80 0.00 37.52 3.01
2016 2086 4.050852 AGTTCGAACTACCAAAACGTCT 57.949 40.909 28.80 0.20 37.52 4.18
2027 2097 5.186996 AGACGTTTTGGTAGTTCGAACTA 57.813 39.130 29.57 29.57 40.37 2.24
2028 2098 4.050852 AGACGTTTTGGTAGTTCGAACT 57.949 40.909 31.70 31.70 42.91 3.01
2029 2099 4.783959 AAGACGTTTTGGTAGTTCGAAC 57.216 40.909 20.71 20.71 0.00 3.95
2030 2100 8.761575 AATATAAGACGTTTTGGTAGTTCGAA 57.238 30.769 0.83 0.00 0.00 3.71
2031 2101 8.761575 AAATATAAGACGTTTTGGTAGTTCGA 57.238 30.769 0.83 0.00 0.00 3.71
2037 2107 9.086336 CGTTCCTAAATATAAGACGTTTTGGTA 57.914 33.333 0.83 0.00 32.19 3.25
2038 2108 7.064966 CCGTTCCTAAATATAAGACGTTTTGGT 59.935 37.037 0.83 0.00 32.19 3.67
2039 2109 7.278424 TCCGTTCCTAAATATAAGACGTTTTGG 59.722 37.037 0.83 0.00 0.00 3.28
2040 2110 8.188531 TCCGTTCCTAAATATAAGACGTTTTG 57.811 34.615 0.83 0.00 0.00 2.44
2041 2111 8.659491 GTTCCGTTCCTAAATATAAGACGTTTT 58.341 33.333 0.00 0.00 0.00 2.43
2042 2112 7.009540 CGTTCCGTTCCTAAATATAAGACGTTT 59.990 37.037 0.00 0.00 0.00 3.60
2043 2113 6.473455 CGTTCCGTTCCTAAATATAAGACGTT 59.527 38.462 0.00 0.00 0.00 3.99
2044 2114 5.973565 CGTTCCGTTCCTAAATATAAGACGT 59.026 40.000 0.00 0.00 0.00 4.34
2045 2115 5.973565 ACGTTCCGTTCCTAAATATAAGACG 59.026 40.000 0.00 0.00 36.35 4.18
2046 2116 7.199078 AGACGTTCCGTTCCTAAATATAAGAC 58.801 38.462 0.00 0.00 41.37 3.01
2047 2117 7.338800 AGACGTTCCGTTCCTAAATATAAGA 57.661 36.000 0.00 0.00 41.37 2.10
2048 2118 7.998753 AAGACGTTCCGTTCCTAAATATAAG 57.001 36.000 0.00 0.00 41.37 1.73
2055 2125 8.443160 CGTATATATAAGACGTTCCGTTCCTAA 58.557 37.037 10.78 0.00 41.37 2.69
2056 2126 7.817478 TCGTATATATAAGACGTTCCGTTCCTA 59.183 37.037 15.97 0.00 41.37 2.94
2057 2127 6.650807 TCGTATATATAAGACGTTCCGTTCCT 59.349 38.462 15.97 0.00 41.37 3.36
2058 2128 6.831769 TCGTATATATAAGACGTTCCGTTCC 58.168 40.000 15.97 0.00 41.37 3.62
2059 2129 7.005681 CGTTCGTATATATAAGACGTTCCGTTC 59.994 40.741 15.97 0.00 41.37 3.95
2060 2130 6.792250 CGTTCGTATATATAAGACGTTCCGTT 59.208 38.462 15.97 0.00 41.37 4.44
2061 2131 6.299604 CGTTCGTATATATAAGACGTTCCGT 58.700 40.000 15.97 0.00 45.10 4.69
2062 2132 5.729883 CCGTTCGTATATATAAGACGTTCCG 59.270 44.000 15.97 15.13 37.81 4.30
2063 2133 6.831769 TCCGTTCGTATATATAAGACGTTCC 58.168 40.000 15.97 7.86 37.81 3.62
2064 2134 6.958193 CCTCCGTTCGTATATATAAGACGTTC 59.042 42.308 15.97 11.10 37.81 3.95
2065 2135 6.128172 CCCTCCGTTCGTATATATAAGACGTT 60.128 42.308 15.97 0.00 37.81 3.99
2066 2136 5.352569 CCCTCCGTTCGTATATATAAGACGT 59.647 44.000 15.97 0.00 37.81 4.34
2067 2137 5.582269 TCCCTCCGTTCGTATATATAAGACG 59.418 44.000 7.76 12.94 37.93 4.18
2068 2138 6.597280 ACTCCCTCCGTTCGTATATATAAGAC 59.403 42.308 7.76 3.92 0.00 3.01
2069 2139 6.715280 ACTCCCTCCGTTCGTATATATAAGA 58.285 40.000 4.47 4.47 0.00 2.10
2070 2140 6.998968 ACTCCCTCCGTTCGTATATATAAG 57.001 41.667 0.00 0.00 0.00 1.73
2074 2144 9.547753 GTAATATACTCCCTCCGTTCGTATATA 57.452 37.037 0.00 0.00 34.44 0.86
2075 2145 8.270744 AGTAATATACTCCCTCCGTTCGTATAT 58.729 37.037 0.00 0.00 36.07 0.86
2076 2146 7.624549 AGTAATATACTCCCTCCGTTCGTATA 58.375 38.462 0.00 0.00 32.47 1.47
2077 2147 6.479884 AGTAATATACTCCCTCCGTTCGTAT 58.520 40.000 0.00 0.00 32.47 3.06
2078 2148 5.869579 AGTAATATACTCCCTCCGTTCGTA 58.130 41.667 0.00 0.00 32.47 3.43
2079 2149 4.723309 AGTAATATACTCCCTCCGTTCGT 58.277 43.478 0.00 0.00 32.47 3.85
2080 2150 5.163774 GCTAGTAATATACTCCCTCCGTTCG 60.164 48.000 0.00 0.00 40.14 3.95
2081 2151 5.709164 TGCTAGTAATATACTCCCTCCGTTC 59.291 44.000 0.00 0.00 40.14 3.95
2082 2152 5.638133 TGCTAGTAATATACTCCCTCCGTT 58.362 41.667 0.00 0.00 40.14 4.44
2083 2153 5.013913 TCTGCTAGTAATATACTCCCTCCGT 59.986 44.000 0.00 0.00 40.14 4.69
2084 2154 5.354792 GTCTGCTAGTAATATACTCCCTCCG 59.645 48.000 0.00 0.00 40.14 4.63
2085 2155 6.486941 AGTCTGCTAGTAATATACTCCCTCC 58.513 44.000 0.00 0.00 40.14 4.30
2086 2156 9.689501 ATTAGTCTGCTAGTAATATACTCCCTC 57.310 37.037 0.00 0.00 40.14 4.30
2092 2162 9.919348 GCGTCTATTAGTCTGCTAGTAATATAC 57.081 37.037 7.14 8.67 36.05 1.47
2106 2176 9.031360 TGTATGAAATTCTTGCGTCTATTAGTC 57.969 33.333 0.00 0.00 0.00 2.59
2162 2232 8.774586 ACATATAGGTTTCGACAAATGATAAGC 58.225 33.333 0.00 0.00 0.00 3.09
2174 2244 7.284716 ACTCTCATGTGTACATATAGGTTTCGA 59.715 37.037 4.64 0.00 34.26 3.71
2175 2245 7.426410 ACTCTCATGTGTACATATAGGTTTCG 58.574 38.462 4.64 0.00 34.26 3.46
2209 2279 5.568685 TTGAACTTGGATTTCGTCAACAA 57.431 34.783 0.00 0.00 0.00 2.83
2219 2289 3.375299 GTGCGCTAGATTGAACTTGGATT 59.625 43.478 9.73 0.00 0.00 3.01
2277 2347 2.155924 GCTCGTAGCTCACACAAGTTTC 59.844 50.000 0.00 0.00 38.45 2.78
2305 2375 4.086457 GGGGAGCTGAAAATAAAAGGTGA 58.914 43.478 0.00 0.00 0.00 4.02
2366 2436 3.501349 ACAGACGCACTATATCCATCCT 58.499 45.455 0.00 0.00 0.00 3.24
2378 2448 7.589954 ACAAGAAAATAAAACATACAGACGCAC 59.410 33.333 0.00 0.00 0.00 5.34
2379 2449 7.589587 CACAAGAAAATAAAACATACAGACGCA 59.410 33.333 0.00 0.00 0.00 5.24
2380 2450 7.060633 CCACAAGAAAATAAAACATACAGACGC 59.939 37.037 0.00 0.00 0.00 5.19
2381 2451 8.286800 TCCACAAGAAAATAAAACATACAGACG 58.713 33.333 0.00 0.00 0.00 4.18
2393 2473 9.919416 TCATATCCATTCTCCACAAGAAAATAA 57.081 29.630 0.00 0.00 46.85 1.40
2549 2629 6.313658 TCATCTCAACATGCATGTACTTACAC 59.686 38.462 31.55 0.00 40.80 2.90
2638 2720 3.761752 ACAACAATTATGGAACGGAAGGG 59.238 43.478 0.00 0.00 0.00 3.95
2646 2728 5.776173 AAACCACGACAACAATTATGGAA 57.224 34.783 0.00 0.00 0.00 3.53
2656 2738 7.273815 TCAAATTTGAACTAAAACCACGACAAC 59.726 33.333 18.45 0.00 33.55 3.32
2691 2773 5.181245 ACTCCGTTCCATAATTCTTGTTGTG 59.819 40.000 0.00 0.00 0.00 3.33
2694 2776 5.556915 TCACTCCGTTCCATAATTCTTGTT 58.443 37.500 0.00 0.00 0.00 2.83
2711 2793 4.321718 ACATGCATGCATATACTCACTCC 58.678 43.478 31.73 0.00 34.91 3.85
2715 2797 4.074259 GGGAACATGCATGCATATACTCA 58.926 43.478 31.73 2.23 34.91 3.41
2766 2848 6.803320 GCATGGATGTGTATGTATAATGTTGC 59.197 38.462 0.00 0.00 0.00 4.17
2798 2880 3.350219 TTGGAGGAGACATTTAGCACC 57.650 47.619 0.00 0.00 0.00 5.01
2860 2947 2.984623 CTAGCTGGCTCTGGTGCA 59.015 61.111 0.00 0.00 34.04 4.57
2861 2948 1.680522 TAGCTAGCTGGCTCTGGTGC 61.681 60.000 29.31 2.41 42.97 5.01
2917 3004 5.941555 AGCACTTGTATTAGCTTAGGTCT 57.058 39.130 0.00 0.00 32.52 3.85
2980 3114 6.814954 ATGTATGTTTGTCCCTGATCTAGT 57.185 37.500 0.00 0.00 0.00 2.57
2986 3120 4.881273 GCATGTATGTATGTTTGTCCCTGA 59.119 41.667 0.00 0.00 0.00 3.86
3114 3249 0.942962 GCTGGAGGAAAGCATGATCG 59.057 55.000 0.00 0.00 40.52 3.69
3127 3262 5.122396 GTGAAAAGTAGTGGTAATGCTGGAG 59.878 44.000 0.00 0.00 0.00 3.86
3128 3263 5.001232 GTGAAAAGTAGTGGTAATGCTGGA 58.999 41.667 0.00 0.00 0.00 3.86
3226 3361 8.863049 CATGCCTGTGTTAATTTAACTGAATTC 58.137 33.333 17.70 0.00 39.38 2.17
3262 3397 7.613022 CAGGAAACATATTGCCCATCTATACAT 59.387 37.037 0.00 0.00 33.09 2.29
3296 3433 4.096081 GCAGTGCAGAGAAGATAGCAAAAT 59.904 41.667 11.09 0.00 38.91 1.82
3331 3468 2.353579 ACTGTGGCGTGTGAGTAAAAAC 59.646 45.455 0.00 0.00 0.00 2.43
3374 3529 7.925993 TGTATAACTATGCCTGCAAAATGTAC 58.074 34.615 0.00 0.00 0.00 2.90
3388 3543 8.214472 CGTTCAATTGACCGATGTATAACTATG 58.786 37.037 19.41 0.00 31.30 2.23
3389 3544 7.384115 CCGTTCAATTGACCGATGTATAACTAT 59.616 37.037 24.82 0.00 31.30 2.12
3403 3558 2.159707 CCATGTCGTCCGTTCAATTGAC 60.160 50.000 7.89 2.92 0.00 3.18
3406 3561 1.271163 ACCCATGTCGTCCGTTCAATT 60.271 47.619 0.00 0.00 0.00 2.32
3411 3566 1.217244 GCTACCCATGTCGTCCGTT 59.783 57.895 0.00 0.00 0.00 4.44
3426 3581 1.960763 CTGCGGCTGTGTGTTGCTA 60.961 57.895 0.00 0.00 0.00 3.49
3602 3759 8.460831 AATTGGACTTCGTTAATTAATTGTGC 57.539 30.769 11.05 5.02 0.00 4.57
3660 3817 6.594159 GGCTACACTAAGTTGTCATTGTACAT 59.406 38.462 0.00 0.00 0.00 2.29
3691 3848 8.671921 AGAAGATCAGCAAAAACATACTATGTG 58.328 33.333 2.31 0.00 44.07 3.21
3836 4005 4.745751 CAGAAACCCGCCGCGGTA 62.746 66.667 29.21 0.00 46.80 4.02
3848 4017 2.345991 CCCGTCGCCTTCCAGAAA 59.654 61.111 0.00 0.00 0.00 2.52
3875 4044 2.372264 CAGTGCTTTGCATAGATGGGT 58.628 47.619 8.49 0.00 41.91 4.51
3962 4131 2.410939 CGGTACTCATGCATGATCCAG 58.589 52.381 28.81 19.23 36.02 3.86
4035 4204 7.225538 GGACAGAGATCAATGTATGTAAAGTGG 59.774 40.741 3.09 0.00 0.00 4.00
4041 4210 7.846101 AGATGGACAGAGATCAATGTATGTA 57.154 36.000 3.09 0.00 0.00 2.29
4043 4212 7.171167 GTCAAGATGGACAGAGATCAATGTATG 59.829 40.741 3.09 0.00 37.73 2.39
4050 4219 3.379688 CGAGTCAAGATGGACAGAGATCA 59.620 47.826 0.00 0.00 40.29 2.92
4093 4262 5.688807 AGGCTATGTTGATTTGTAGAGCAT 58.311 37.500 0.00 0.00 0.00 3.79
4095 4264 7.736447 ATTAGGCTATGTTGATTTGTAGAGC 57.264 36.000 0.00 0.00 0.00 4.09
4131 4300 1.856920 ACCCACCCTTCTTCCTGAAAA 59.143 47.619 0.00 0.00 33.79 2.29
4140 4309 2.119495 CTGCATACTACCCACCCTTCT 58.881 52.381 0.00 0.00 0.00 2.85
4182 4351 3.072622 GGTCTAGGTCCCTTCTTGTTGTT 59.927 47.826 0.00 0.00 0.00 2.83
4194 4363 0.601311 GCGCATCATGGTCTAGGTCC 60.601 60.000 0.30 0.00 0.00 4.46
4197 4366 0.035881 ATGGCGCATCATGGTCTAGG 59.964 55.000 10.83 0.00 0.00 3.02
4230 4399 1.224315 CATGAAGGGCCCATCGTCA 59.776 57.895 27.56 21.13 0.00 4.35
4233 4402 1.529948 ATGCATGAAGGGCCCATCG 60.530 57.895 27.56 11.25 0.00 3.84
4533 4702 1.248486 TGTCCAGAACTCTCCAGTCG 58.752 55.000 0.00 0.00 29.93 4.18
4584 4753 1.308998 CATAATCGACACCCTTGGCC 58.691 55.000 0.00 0.00 0.00 5.36
4720 4889 6.950860 TGGGATGCTAGTATATTCCATTGA 57.049 37.500 0.00 0.00 0.00 2.57
5025 5194 4.258543 TCAAGTTCGTTGAAAGACCAACT 58.741 39.130 0.00 0.00 42.49 3.16
5093 5267 4.566759 TGTTATAAAGATGAGCACTGTCGC 59.433 41.667 0.00 0.00 0.00 5.19
5098 5272 9.678260 AAATCTCTTGTTATAAAGATGAGCACT 57.322 29.630 0.00 0.00 35.67 4.40
5120 5294 8.460831 AACGGCAACAAATGTAGAAATAAATC 57.539 30.769 0.00 0.00 0.00 2.17
5204 5439 5.184479 ACTTCTTAGCGTCTGTACATGGTTA 59.816 40.000 0.00 0.00 0.00 2.85
5209 5444 9.464714 CATTTATACTTCTTAGCGTCTGTACAT 57.535 33.333 0.00 0.00 0.00 2.29
5212 5447 8.680001 TGTCATTTATACTTCTTAGCGTCTGTA 58.320 33.333 0.00 0.00 0.00 2.74
5214 5449 7.987268 TGTCATTTATACTTCTTAGCGTCTG 57.013 36.000 0.00 0.00 0.00 3.51
5215 5450 9.035607 CATTGTCATTTATACTTCTTAGCGTCT 57.964 33.333 0.00 0.00 0.00 4.18
5216 5451 7.794349 GCATTGTCATTTATACTTCTTAGCGTC 59.206 37.037 0.00 0.00 0.00 5.19
5217 5452 7.516785 CGCATTGTCATTTATACTTCTTAGCGT 60.517 37.037 0.00 0.00 32.84 5.07
5218 5453 6.787515 CGCATTGTCATTTATACTTCTTAGCG 59.212 38.462 0.00 0.00 0.00 4.26
5219 5454 7.851508 TCGCATTGTCATTTATACTTCTTAGC 58.148 34.615 0.00 0.00 0.00 3.09
5220 5455 9.855361 CTTCGCATTGTCATTTATACTTCTTAG 57.145 33.333 0.00 0.00 0.00 2.18
5230 5478 5.879777 TGGAAGATCTTCGCATTGTCATTTA 59.120 36.000 25.40 0.82 40.37 1.40
5240 5488 5.344743 AGATTAACTGGAAGATCTTCGCA 57.655 39.130 25.40 21.96 40.37 5.10
5242 5490 6.507900 TGCTAGATTAACTGGAAGATCTTCG 58.492 40.000 25.40 16.71 40.37 3.79
5361 5613 8.087750 CAGAGGGAGAATGATTAGTCATACTTC 58.912 40.741 0.57 0.00 44.20 3.01
5410 5662 7.281841 TCACATGCATCCACATAGATAAGAAA 58.718 34.615 0.00 0.00 0.00 2.52
5526 5778 5.314306 AGACTAATATTTCAGGCCCATCCAT 59.686 40.000 0.00 0.00 37.29 3.41
5529 5781 5.703130 GTGAGACTAATATTTCAGGCCCATC 59.297 44.000 0.00 0.00 0.00 3.51
5648 6027 4.034975 GCAGGACTTTGACATAGAGAATGC 59.965 45.833 0.00 1.80 39.39 3.56
5671 6050 5.521372 TCATCGCTGATTCTGTGAGTTATTG 59.479 40.000 11.65 5.88 0.00 1.90
5689 6068 2.541762 GCAGAGACCTACATTTCATCGC 59.458 50.000 0.00 0.00 0.00 4.58
5691 6070 4.979197 CGTAGCAGAGACCTACATTTCATC 59.021 45.833 0.00 0.00 35.94 2.92
5759 6138 2.290641 GACGCCATGTTGAGTTTTCTGT 59.709 45.455 0.00 0.00 0.00 3.41
5818 6197 8.132995 TCTTTCCGGTCAGACTTTTAAATTTTC 58.867 33.333 0.00 0.00 0.00 2.29
5819 6198 8.002984 TCTTTCCGGTCAGACTTTTAAATTTT 57.997 30.769 0.00 0.00 0.00 1.82
5820 6199 7.576861 TCTTTCCGGTCAGACTTTTAAATTT 57.423 32.000 0.00 0.00 0.00 1.82
5821 6200 7.423199 GTTCTTTCCGGTCAGACTTTTAAATT 58.577 34.615 0.00 0.00 0.00 1.82
5822 6201 6.016527 GGTTCTTTCCGGTCAGACTTTTAAAT 60.017 38.462 0.00 0.00 0.00 1.40
5823 6202 5.297527 GGTTCTTTCCGGTCAGACTTTTAAA 59.702 40.000 0.00 0.00 0.00 1.52
5824 6203 4.818005 GGTTCTTTCCGGTCAGACTTTTAA 59.182 41.667 0.00 0.00 0.00 1.52
5825 6204 4.141665 TGGTTCTTTCCGGTCAGACTTTTA 60.142 41.667 0.00 0.00 0.00 1.52
5826 6205 3.211865 GGTTCTTTCCGGTCAGACTTTT 58.788 45.455 0.00 0.00 0.00 2.27
5827 6206 2.171870 TGGTTCTTTCCGGTCAGACTTT 59.828 45.455 0.00 0.00 0.00 2.66
5828 6207 1.766496 TGGTTCTTTCCGGTCAGACTT 59.234 47.619 0.00 0.00 0.00 3.01
5829 6208 1.420430 TGGTTCTTTCCGGTCAGACT 58.580 50.000 0.00 0.00 0.00 3.24
5830 6209 2.249844 TTGGTTCTTTCCGGTCAGAC 57.750 50.000 0.00 0.00 0.00 3.51
5831 6210 2.092861 TGTTTGGTTCTTTCCGGTCAGA 60.093 45.455 0.00 0.56 0.00 3.27
5832 6211 2.294074 TGTTTGGTTCTTTCCGGTCAG 58.706 47.619 0.00 0.00 0.00 3.51
5833 6212 2.421751 TGTTTGGTTCTTTCCGGTCA 57.578 45.000 0.00 0.00 0.00 4.02
5834 6213 2.686405 AGTTGTTTGGTTCTTTCCGGTC 59.314 45.455 0.00 0.00 0.00 4.79
5835 6214 2.730382 AGTTGTTTGGTTCTTTCCGGT 58.270 42.857 0.00 0.00 0.00 5.28
5836 6215 3.793797 AAGTTGTTTGGTTCTTTCCGG 57.206 42.857 0.00 0.00 0.00 5.14
5837 6216 5.744666 TCTAAGTTGTTTGGTTCTTTCCG 57.255 39.130 0.00 0.00 0.00 4.30
5838 6217 7.272037 TGATCTAAGTTGTTTGGTTCTTTCC 57.728 36.000 0.00 0.00 0.00 3.13
5839 6218 8.188139 TGTTGATCTAAGTTGTTTGGTTCTTTC 58.812 33.333 0.00 0.00 0.00 2.62
5840 6219 8.062065 TGTTGATCTAAGTTGTTTGGTTCTTT 57.938 30.769 0.00 0.00 0.00 2.52
5841 6220 7.639113 TGTTGATCTAAGTTGTTTGGTTCTT 57.361 32.000 0.00 0.00 0.00 2.52
5842 6221 7.639113 TTGTTGATCTAAGTTGTTTGGTTCT 57.361 32.000 0.00 0.00 0.00 3.01
5843 6222 7.043391 GCTTTGTTGATCTAAGTTGTTTGGTTC 60.043 37.037 0.00 0.00 32.91 3.62
5844 6223 6.756542 GCTTTGTTGATCTAAGTTGTTTGGTT 59.243 34.615 0.00 0.00 32.91 3.67
5845 6224 6.273071 GCTTTGTTGATCTAAGTTGTTTGGT 58.727 36.000 0.00 0.00 32.91 3.67
5846 6225 5.399301 CGCTTTGTTGATCTAAGTTGTTTGG 59.601 40.000 0.00 0.00 32.91 3.28
5847 6226 5.971202 ACGCTTTGTTGATCTAAGTTGTTTG 59.029 36.000 0.00 0.00 32.91 2.93
5848 6227 6.131544 ACGCTTTGTTGATCTAAGTTGTTT 57.868 33.333 0.00 0.00 32.91 2.83
5849 6228 5.751243 ACGCTTTGTTGATCTAAGTTGTT 57.249 34.783 0.00 0.00 32.91 2.83
5850 6229 5.751243 AACGCTTTGTTGATCTAAGTTGT 57.249 34.783 0.00 0.00 40.00 3.32
5851 6230 8.728088 ATTAAACGCTTTGTTGATCTAAGTTG 57.272 30.769 0.00 0.00 40.84 3.16
5897 6278 2.095718 GCATGTCGGTTTTCTTCTCCAC 60.096 50.000 0.00 0.00 0.00 4.02
5919 6300 7.291885 TCATGATCTGGAGAAGTTCTTCCATAT 59.708 37.037 18.53 17.01 0.00 1.78
5920 6301 6.612863 TCATGATCTGGAGAAGTTCTTCCATA 59.387 38.462 18.53 14.17 0.00 2.74
6178 6559 5.047660 GTGGTAGAGCTATCCTGTTCCTATG 60.048 48.000 0.00 0.00 0.00 2.23
6190 6571 3.689872 TTCCCTGAGTGGTAGAGCTAT 57.310 47.619 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.