Multiple sequence alignment - TraesCS7D01G008200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G008200 chr7D 100.000 5101 0 0 809 5909 4010763 4005663 0.000000e+00 9420.0
1 TraesCS7D01G008200 chr7D 81.907 2559 393 52 1811 4327 3551717 3549187 0.000000e+00 2097.0
2 TraesCS7D01G008200 chr7D 86.546 1546 176 17 2249 3768 3423787 3422248 0.000000e+00 1674.0
3 TraesCS7D01G008200 chr7D 82.338 1942 263 49 1811 3720 2687374 2685481 0.000000e+00 1613.0
4 TraesCS7D01G008200 chr7D 86.717 1069 85 34 4825 5876 3421365 3420337 0.000000e+00 1134.0
5 TraesCS7D01G008200 chr7D 88.144 776 61 16 5103 5876 2508386 2507640 0.000000e+00 894.0
6 TraesCS7D01G008200 chr7D 90.514 506 37 9 5375 5876 2665108 2664610 0.000000e+00 658.0
7 TraesCS7D01G008200 chr7D 100.000 353 0 0 1 353 4011571 4011219 0.000000e+00 652.0
8 TraesCS7D01G008200 chr7D 80.287 837 141 15 3644 4466 2672098 2671272 1.410000e-170 610.0
9 TraesCS7D01G008200 chr7D 84.211 456 47 16 4812 5254 2678619 2678176 2.550000e-113 420.0
10 TraesCS7D01G008200 chr7D 89.180 305 29 3 5572 5876 2676437 2676137 1.550000e-100 377.0
11 TraesCS7D01G008200 chr7D 83.544 79 13 0 4492 4570 393040936 393041014 2.280000e-09 75.0
12 TraesCS7D01G008200 chr7A 95.622 2695 81 8 1805 4466 3843256 3840566 0.000000e+00 4289.0
13 TraesCS7D01G008200 chr7A 84.647 1928 253 25 2370 4267 2800443 2798529 0.000000e+00 1881.0
14 TraesCS7D01G008200 chr7A 91.081 1323 85 21 4565 5876 3840565 3839265 0.000000e+00 1759.0
15 TraesCS7D01G008200 chr7A 95.613 889 38 1 977 1864 3844176 3843288 0.000000e+00 1424.0
16 TraesCS7D01G008200 chr7A 89.426 766 65 14 5113 5874 2126311 2125558 0.000000e+00 952.0
17 TraesCS7D01G008200 chr7A 83.540 887 142 4 979 1862 2805906 2805021 0.000000e+00 826.0
18 TraesCS7D01G008200 chr7A 82.220 883 156 1 982 1863 3156012 3155130 0.000000e+00 760.0
19 TraesCS7D01G008200 chr7A 82.496 697 90 25 4856 5536 3801980 3801300 3.070000e-162 582.0
20 TraesCS7D01G008200 chr7A 88.715 319 31 3 5560 5876 3801308 3800993 9.290000e-103 385.0
21 TraesCS7D01G008200 chr7A 96.380 221 5 1 17 234 3844945 3844725 1.570000e-95 361.0
22 TraesCS7D01G008200 chr7A 93.706 143 8 1 835 976 3844397 3844255 4.640000e-51 213.0
23 TraesCS7D01G008200 chr7A 95.726 117 4 1 238 353 3844660 3844544 2.810000e-43 187.0
24 TraesCS7D01G008200 chr7A 76.081 347 58 21 1829 2159 2687442 2687105 2.200000e-34 158.0
25 TraesCS7D01G008200 chr7A 100.000 33 0 0 809 841 3844494 3844462 1.780000e-05 62.1
26 TraesCS7D01G008200 chr4A 86.084 2702 277 54 1801 4445 739606489 739609148 0.000000e+00 2815.0
27 TraesCS7D01G008200 chr4A 84.723 2723 316 59 1801 4466 740494661 740497340 0.000000e+00 2632.0
28 TraesCS7D01G008200 chr4A 86.150 2260 254 33 2026 4261 740122898 740120674 0.000000e+00 2385.0
29 TraesCS7D01G008200 chr4A 88.004 2034 215 20 2233 4248 742021130 742023152 0.000000e+00 2377.0
30 TraesCS7D01G008200 chr4A 83.397 2620 350 61 1806 4381 742160187 742157609 0.000000e+00 2350.0
31 TraesCS7D01G008200 chr4A 87.445 2047 200 28 1806 3811 740150112 740148082 0.000000e+00 2303.0
32 TraesCS7D01G008200 chr4A 85.117 2009 249 27 2364 4335 739886463 739888458 0.000000e+00 2008.0
33 TraesCS7D01G008200 chr4A 82.894 2011 303 29 2257 4245 741421972 741423963 0.000000e+00 1770.0
34 TraesCS7D01G008200 chr4A 84.416 1431 187 22 3056 4462 741505836 741504418 0.000000e+00 1375.0
35 TraesCS7D01G008200 chr4A 88.940 1085 93 19 4806 5876 742023256 742024327 0.000000e+00 1314.0
36 TraesCS7D01G008200 chr4A 92.135 890 67 3 976 1864 739605575 739606462 0.000000e+00 1253.0
37 TraesCS7D01G008200 chr4A 83.902 1348 175 23 2954 4270 741805100 741806436 0.000000e+00 1249.0
38 TraesCS7D01G008200 chr4A 88.692 902 87 9 976 1862 742019786 742020687 0.000000e+00 1086.0
39 TraesCS7D01G008200 chr4A 88.348 884 100 3 978 1859 742161108 742160226 0.000000e+00 1059.0
40 TraesCS7D01G008200 chr4A 88.268 895 89 10 984 1862 740124034 740123140 0.000000e+00 1057.0
41 TraesCS7D01G008200 chr4A 86.273 998 86 29 4570 5543 733821922 733822892 0.000000e+00 1037.0
42 TraesCS7D01G008200 chr4A 83.853 1090 123 36 4812 5876 740497448 740498509 0.000000e+00 989.0
43 TraesCS7D01G008200 chr4A 87.000 900 63 27 4957 5840 740134389 740133528 0.000000e+00 965.0
44 TraesCS7D01G008200 chr4A 91.364 660 56 1 1206 1864 740150804 740150145 0.000000e+00 902.0
45 TraesCS7D01G008200 chr4A 87.995 758 67 15 4812 5552 739609267 739610017 0.000000e+00 874.0
46 TraesCS7D01G008200 chr4A 83.070 886 148 2 976 1860 741420764 741421648 0.000000e+00 804.0
47 TraesCS7D01G008200 chr4A 84.701 804 90 21 4812 5607 733984241 733983463 0.000000e+00 773.0
48 TraesCS7D01G008200 chr4A 91.506 518 40 3 5360 5876 740119683 740119169 0.000000e+00 710.0
49 TraesCS7D01G008200 chr4A 87.091 519 51 11 5365 5876 733808795 733809304 1.850000e-159 573.0
50 TraesCS7D01G008200 chr4A 79.551 445 62 18 4812 5238 733808340 733808773 2.080000e-74 291.0
51 TraesCS7D01G008200 chr4A 79.739 153 23 5 4276 4421 740120550 740120399 2.910000e-18 104.0
52 TraesCS7D01G008200 chr4A 96.364 55 0 1 66 120 740152587 740152535 8.160000e-14 89.8
53 TraesCS7D01G008200 chr4A 94.545 55 1 2 66 120 740488612 740488664 3.790000e-12 84.2
54 TraesCS7D01G008200 chr4A 94.231 52 1 1 69 120 741362969 741362920 1.770000e-10 78.7
55 TraesCS7D01G008200 chr4A 94.231 52 1 1 69 120 741407436 741407387 1.770000e-10 78.7
56 TraesCS7D01G008200 chr1D 82.780 2050 307 35 2223 4248 464795424 464797451 0.000000e+00 1788.0
57 TraesCS7D01G008200 chr1D 88.636 88 10 0 4482 4569 42284814 42284727 2.250000e-19 108.0
58 TraesCS7D01G008200 chr3A 95.349 86 4 0 123 208 99426270 99426185 2.870000e-28 137.0
59 TraesCS7D01G008200 chr5B 94.382 89 3 2 123 209 149315653 149315741 1.030000e-27 135.0
60 TraesCS7D01G008200 chr5B 89.535 86 9 0 4485 4570 638123805 638123720 6.260000e-20 110.0
61 TraesCS7D01G008200 chr3B 95.294 85 4 0 124 208 200860683 200860767 1.030000e-27 135.0
62 TraesCS7D01G008200 chr3B 86.813 91 12 0 4479 4569 825747188 825747098 1.050000e-17 102.0
63 TraesCS7D01G008200 chr1B 94.318 88 5 0 124 211 593927161 593927074 1.030000e-27 135.0
64 TraesCS7D01G008200 chr1B 90.000 100 8 2 111 208 628049799 628049898 1.730000e-25 128.0
65 TraesCS7D01G008200 chr1B 85.714 91 13 0 4479 4569 8043734 8043824 4.870000e-16 97.1
66 TraesCS7D01G008200 chr1B 94.231 52 3 0 4703 4754 40362503 40362452 4.910000e-11 80.5
67 TraesCS7D01G008200 chr2D 90.909 99 9 0 122 220 631487313 631487215 3.720000e-27 134.0
68 TraesCS7D01G008200 chr2D 93.182 88 4 2 123 209 371930586 371930500 1.730000e-25 128.0
69 TraesCS7D01G008200 chr2D 94.231 52 3 0 4703 4754 634297819 634297870 4.910000e-11 80.5
70 TraesCS7D01G008200 chr6B 94.118 85 5 0 124 208 713960526 713960610 4.810000e-26 130.0
71 TraesCS7D01G008200 chr4B 84.211 95 14 1 4481 4574 97922055 97922149 2.270000e-14 91.6
72 TraesCS7D01G008200 chr2A 84.884 86 10 3 4485 4569 770016859 770016776 3.790000e-12 84.2
73 TraesCS7D01G008200 chr6D 88.060 67 7 1 4505 4570 83054339 83054273 1.770000e-10 78.7
74 TraesCS7D01G008200 chr6D 82.759 87 9 4 4490 4570 420745771 420745857 8.210000e-09 73.1
75 TraesCS7D01G008200 chr1A 93.478 46 3 0 4709 4754 494803587 494803632 1.060000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G008200 chr7D 4005663 4011571 5908 True 5036.000000 9420 100.000000 1 5909 2 chr7D.!!$R8 5908
1 TraesCS7D01G008200 chr7D 3549187 3551717 2530 True 2097.000000 2097 81.907000 1811 4327 1 chr7D.!!$R5 2516
2 TraesCS7D01G008200 chr7D 2685481 2687374 1893 True 1613.000000 1613 82.338000 1811 3720 1 chr7D.!!$R4 1909
3 TraesCS7D01G008200 chr7D 3420337 3423787 3450 True 1404.000000 1674 86.631500 2249 5876 2 chr7D.!!$R7 3627
4 TraesCS7D01G008200 chr7D 2507640 2508386 746 True 894.000000 894 88.144000 5103 5876 1 chr7D.!!$R1 773
5 TraesCS7D01G008200 chr7D 2671272 2672098 826 True 610.000000 610 80.287000 3644 4466 1 chr7D.!!$R3 822
6 TraesCS7D01G008200 chr7D 2676137 2678619 2482 True 398.500000 420 86.695500 4812 5876 2 chr7D.!!$R6 1064
7 TraesCS7D01G008200 chr7A 2798529 2800443 1914 True 1881.000000 1881 84.647000 2370 4267 1 chr7A.!!$R3 1897
8 TraesCS7D01G008200 chr7A 3839265 3844945 5680 True 1185.014286 4289 95.446857 17 5876 7 chr7A.!!$R7 5859
9 TraesCS7D01G008200 chr7A 2125558 2126311 753 True 952.000000 952 89.426000 5113 5874 1 chr7A.!!$R1 761
10 TraesCS7D01G008200 chr7A 2805021 2805906 885 True 826.000000 826 83.540000 979 1862 1 chr7A.!!$R4 883
11 TraesCS7D01G008200 chr7A 3155130 3156012 882 True 760.000000 760 82.220000 982 1863 1 chr7A.!!$R5 881
12 TraesCS7D01G008200 chr7A 3800993 3801980 987 True 483.500000 582 85.605500 4856 5876 2 chr7A.!!$R6 1020
13 TraesCS7D01G008200 chr4A 739886463 739888458 1995 False 2008.000000 2008 85.117000 2364 4335 1 chr4A.!!$F2 1971
14 TraesCS7D01G008200 chr4A 740494661 740498509 3848 False 1810.500000 2632 84.288000 1801 5876 2 chr4A.!!$F7 4075
15 TraesCS7D01G008200 chr4A 742157609 742161108 3499 True 1704.500000 2350 85.872500 978 4381 2 chr4A.!!$R8 3403
16 TraesCS7D01G008200 chr4A 739605575 739610017 4442 False 1647.333333 2815 88.738000 976 5552 3 chr4A.!!$F6 4576
17 TraesCS7D01G008200 chr4A 742019786 742024327 4541 False 1592.333333 2377 88.545333 976 5876 3 chr4A.!!$F9 4900
18 TraesCS7D01G008200 chr4A 741504418 741505836 1418 True 1375.000000 1375 84.416000 3056 4462 1 chr4A.!!$R5 1406
19 TraesCS7D01G008200 chr4A 741420764 741423963 3199 False 1287.000000 1770 82.982000 976 4245 2 chr4A.!!$F8 3269
20 TraesCS7D01G008200 chr4A 741805100 741806436 1336 False 1249.000000 1249 83.902000 2954 4270 1 chr4A.!!$F4 1316
21 TraesCS7D01G008200 chr4A 740148082 740152587 4505 True 1098.266667 2303 91.724333 66 3811 3 chr4A.!!$R7 3745
22 TraesCS7D01G008200 chr4A 740119169 740124034 4865 True 1064.000000 2385 86.415750 984 5876 4 chr4A.!!$R6 4892
23 TraesCS7D01G008200 chr4A 733821922 733822892 970 False 1037.000000 1037 86.273000 4570 5543 1 chr4A.!!$F1 973
24 TraesCS7D01G008200 chr4A 740133528 740134389 861 True 965.000000 965 87.000000 4957 5840 1 chr4A.!!$R2 883
25 TraesCS7D01G008200 chr4A 733983463 733984241 778 True 773.000000 773 84.701000 4812 5607 1 chr4A.!!$R1 795
26 TraesCS7D01G008200 chr4A 733808340 733809304 964 False 432.000000 573 83.321000 4812 5876 2 chr4A.!!$F5 1064
27 TraesCS7D01G008200 chr1D 464795424 464797451 2027 False 1788.000000 1788 82.780000 2223 4248 1 chr1D.!!$F1 2025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 702 0.033366 CCACCCCTTTTCAAAAGCCG 59.967 55.000 4.15 0.0 0.00 5.52 F
887 1364 0.256177 GTGAGTCCCCTCCCAAATCC 59.744 60.000 0.00 0.0 36.86 3.01 F
1446 2920 0.606604 ACGACGTGGTTGCTAATCCT 59.393 50.000 0.00 0.0 0.00 3.24 F
1459 2933 0.963355 TAATCCTGTTGGCGCAACCC 60.963 55.000 10.83 0.0 42.96 4.11 F
1773 3262 1.358152 ACCCGGAGTTGGATGAAAGA 58.642 50.000 0.73 0.0 0.00 2.52 F
2221 3960 3.571828 TGCATACATGTCTCTCTCCTAGC 59.428 47.826 0.00 0.0 0.00 3.42 F
3252 5026 3.581024 TGCCATCACTTTCATGCTTTC 57.419 42.857 0.00 0.0 0.00 2.62 F
4479 6488 0.107017 TAAGTACTCCCTCCGTCCCG 60.107 60.000 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 3960 0.475906 GAATCAGGACATGGAGGGGG 59.524 60.000 0.00 0.00 0.00 5.40 R
2864 4620 9.708222 CACTTCCATATCAAACTATCTTTTTCG 57.292 33.333 0.00 0.00 0.00 3.46 R
3129 4903 0.249073 ACTAGCCTACGAGCATTGCG 60.249 55.000 2.38 0.00 34.23 4.85 R
3252 5026 1.873591 AGCTAGGACACGCAAAACTTG 59.126 47.619 0.00 0.00 0.00 3.16 R
3362 5136 2.435805 TGGGAGCTCACTGATACCAATC 59.564 50.000 18.70 0.00 0.00 2.67 R
3839 5651 1.691434 AGAAGCGAGGGATTGATCCTC 59.309 52.381 9.73 2.63 46.35 3.71 R
4782 6808 0.315568 AGCGTCCCGAGCAATATCTC 59.684 55.000 0.00 0.00 37.01 2.75 R
5307 7718 2.370349 ACAAACCCAAACGACACATGA 58.630 42.857 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.445448 CCCAACTGATAAGAATAGCCAGCT 60.445 45.833 0.00 0.00 0.00 4.24
234 238 1.843368 ACATGTCTTGGGATGCCAAG 58.157 50.000 33.76 33.76 45.92 3.61
235 239 1.076024 ACATGTCTTGGGATGCCAAGT 59.924 47.619 36.18 20.80 45.10 3.16
236 240 2.173519 CATGTCTTGGGATGCCAAGTT 58.826 47.619 36.18 23.23 45.10 2.66
238 242 1.133513 TGTCTTGGGATGCCAAGTTGT 60.134 47.619 36.18 0.00 45.10 3.32
297 702 0.033366 CCACCCCTTTTCAAAAGCCG 59.967 55.000 4.15 0.00 0.00 5.52
301 706 2.703536 ACCCCTTTTCAAAAGCCGAAAT 59.296 40.909 4.15 0.00 32.66 2.17
844 1321 0.617820 TTGCTCCTCCCCTAGTCCAC 60.618 60.000 0.00 0.00 0.00 4.02
887 1364 0.256177 GTGAGTCCCCTCCCAAATCC 59.744 60.000 0.00 0.00 36.86 3.01
908 1385 5.288687 TCCCCATCTCCTTCTATTTTCTCA 58.711 41.667 0.00 0.00 0.00 3.27
958 1435 2.102084 CAGCAAGTAGATCTGCAGCCTA 59.898 50.000 19.40 10.05 0.00 3.93
1272 2746 4.116328 CGCGTCGAGGGAGCTGAA 62.116 66.667 7.31 0.00 34.27 3.02
1446 2920 0.606604 ACGACGTGGTTGCTAATCCT 59.393 50.000 0.00 0.00 0.00 3.24
1459 2933 0.963355 TAATCCTGTTGGCGCAACCC 60.963 55.000 10.83 0.00 42.96 4.11
1773 3262 1.358152 ACCCGGAGTTGGATGAAAGA 58.642 50.000 0.73 0.00 0.00 2.52
1840 3427 4.454504 ACGCACCCTTTTATGTAGTTTCAG 59.545 41.667 0.00 0.00 0.00 3.02
2022 3741 9.146984 TGTATTGTATCAAGGTTTTTCTACTCG 57.853 33.333 0.00 0.00 0.00 4.18
2024 3743 4.624024 TGTATCAAGGTTTTTCTACTCGCG 59.376 41.667 0.00 0.00 0.00 5.87
2221 3960 3.571828 TGCATACATGTCTCTCTCCTAGC 59.428 47.826 0.00 0.00 0.00 3.42
3129 4903 7.559590 AAGGAGCAATATACAACTTCACATC 57.440 36.000 0.00 0.00 0.00 3.06
3252 5026 3.581024 TGCCATCACTTTCATGCTTTC 57.419 42.857 0.00 0.00 0.00 2.62
3839 5651 1.622607 TAGAACCTGGGATGGTGGCG 61.623 60.000 0.00 0.00 40.73 5.69
4450 6459 2.360483 TCCACGAAACAAGGTACGTACA 59.640 45.455 26.02 0.00 37.22 2.90
4453 6462 3.798337 CACGAAACAAGGTACGTACACTT 59.202 43.478 26.02 21.52 37.22 3.16
4466 6475 7.713073 AGGTACGTACACTTCCTATCTAAGTAC 59.287 40.741 26.02 3.27 35.44 2.73
4467 6476 7.713073 GGTACGTACACTTCCTATCTAAGTACT 59.287 40.741 26.02 0.00 35.44 2.73
4468 6477 7.784633 ACGTACACTTCCTATCTAAGTACTC 57.215 40.000 0.00 0.00 35.44 2.59
4469 6478 6.765512 ACGTACACTTCCTATCTAAGTACTCC 59.234 42.308 0.00 0.00 35.44 3.85
4470 6479 6.204495 CGTACACTTCCTATCTAAGTACTCCC 59.796 46.154 0.00 0.00 35.44 4.30
4471 6480 6.344232 ACACTTCCTATCTAAGTACTCCCT 57.656 41.667 0.00 0.00 35.44 4.20
4472 6481 6.367161 ACACTTCCTATCTAAGTACTCCCTC 58.633 44.000 0.00 0.00 35.44 4.30
4473 6482 5.771165 CACTTCCTATCTAAGTACTCCCTCC 59.229 48.000 0.00 0.00 35.44 4.30
4474 6483 4.637387 TCCTATCTAAGTACTCCCTCCG 57.363 50.000 0.00 0.00 0.00 4.63
4475 6484 3.979347 TCCTATCTAAGTACTCCCTCCGT 59.021 47.826 0.00 0.00 0.00 4.69
4476 6485 4.041444 TCCTATCTAAGTACTCCCTCCGTC 59.959 50.000 0.00 0.00 0.00 4.79
4477 6486 2.725221 TCTAAGTACTCCCTCCGTCC 57.275 55.000 0.00 0.00 0.00 4.79
4478 6487 1.213926 TCTAAGTACTCCCTCCGTCCC 59.786 57.143 0.00 0.00 0.00 4.46
4479 6488 0.107017 TAAGTACTCCCTCCGTCCCG 60.107 60.000 0.00 0.00 0.00 5.14
4491 6500 2.992089 CGTCCCGGAAGAATGGATG 58.008 57.895 0.73 0.00 0.00 3.51
4492 6501 0.178068 CGTCCCGGAAGAATGGATGT 59.822 55.000 0.73 0.00 31.77 3.06
4493 6502 1.411246 CGTCCCGGAAGAATGGATGTA 59.589 52.381 0.73 0.00 31.77 2.29
4494 6503 2.037251 CGTCCCGGAAGAATGGATGTAT 59.963 50.000 0.73 0.00 31.77 2.29
4495 6504 3.494398 CGTCCCGGAAGAATGGATGTATT 60.494 47.826 0.73 0.00 31.77 1.89
4496 6505 4.461198 GTCCCGGAAGAATGGATGTATTT 58.539 43.478 0.73 0.00 0.00 1.40
4497 6506 5.617252 GTCCCGGAAGAATGGATGTATTTA 58.383 41.667 0.73 0.00 0.00 1.40
4498 6507 6.059484 GTCCCGGAAGAATGGATGTATTTAA 58.941 40.000 0.73 0.00 0.00 1.52
4499 6508 6.544564 GTCCCGGAAGAATGGATGTATTTAAA 59.455 38.462 0.73 0.00 0.00 1.52
4500 6509 7.230712 GTCCCGGAAGAATGGATGTATTTAAAT 59.769 37.037 0.73 5.89 0.00 1.40
4501 6510 7.230510 TCCCGGAAGAATGGATGTATTTAAATG 59.769 37.037 11.05 0.00 0.00 2.32
4502 6511 6.863126 CCGGAAGAATGGATGTATTTAAATGC 59.137 38.462 11.05 10.05 0.00 3.56
4503 6512 7.424803 CGGAAGAATGGATGTATTTAAATGCA 58.575 34.615 19.34 19.34 35.51 3.96
4504 6513 8.084073 CGGAAGAATGGATGTATTTAAATGCAT 58.916 33.333 25.85 25.85 43.09 3.96
4505 6514 9.768662 GGAAGAATGGATGTATTTAAATGCATT 57.231 29.630 26.15 16.48 44.45 3.56
4542 6551 9.768662 ATACATCCATTTCTATTCATTTTTGCC 57.231 29.630 0.00 0.00 0.00 4.52
4543 6552 7.622713 ACATCCATTTCTATTCATTTTTGCCA 58.377 30.769 0.00 0.00 0.00 4.92
4544 6553 7.550196 ACATCCATTTCTATTCATTTTTGCCAC 59.450 33.333 0.00 0.00 0.00 5.01
4545 6554 7.002250 TCCATTTCTATTCATTTTTGCCACA 57.998 32.000 0.00 0.00 0.00 4.17
4546 6555 7.448420 TCCATTTCTATTCATTTTTGCCACAA 58.552 30.769 0.00 0.00 0.00 3.33
4547 6556 7.603404 TCCATTTCTATTCATTTTTGCCACAAG 59.397 33.333 0.00 0.00 0.00 3.16
4548 6557 7.388500 CCATTTCTATTCATTTTTGCCACAAGT 59.612 33.333 0.00 0.00 0.00 3.16
4549 6558 9.421806 CATTTCTATTCATTTTTGCCACAAGTA 57.578 29.630 0.00 0.00 0.00 2.24
4550 6559 9.995003 ATTTCTATTCATTTTTGCCACAAGTAA 57.005 25.926 0.00 0.00 0.00 2.24
4551 6560 9.995003 TTTCTATTCATTTTTGCCACAAGTAAT 57.005 25.926 0.00 0.00 0.00 1.89
4552 6561 9.995003 TTCTATTCATTTTTGCCACAAGTAATT 57.005 25.926 0.00 0.00 0.00 1.40
4553 6562 9.995003 TCTATTCATTTTTGCCACAAGTAATTT 57.005 25.926 0.00 0.00 0.00 1.82
4556 6565 7.256756 TCATTTTTGCCACAAGTAATTTTGG 57.743 32.000 3.73 3.73 32.32 3.28
4557 6566 7.050377 TCATTTTTGCCACAAGTAATTTTGGA 58.950 30.769 12.11 0.00 32.32 3.53
4558 6567 6.670077 TTTTTGCCACAAGTAATTTTGGAC 57.330 33.333 12.11 4.33 32.32 4.02
4559 6568 3.634568 TGCCACAAGTAATTTTGGACG 57.365 42.857 12.11 0.00 32.32 4.79
4560 6569 2.294791 TGCCACAAGTAATTTTGGACGG 59.705 45.455 12.11 0.00 32.32 4.79
4561 6570 2.924880 GCCACAAGTAATTTTGGACGGC 60.925 50.000 12.11 5.27 35.96 5.68
4562 6571 2.580589 CACAAGTAATTTTGGACGGCG 58.419 47.619 4.80 4.80 32.32 6.46
4563 6572 1.538075 ACAAGTAATTTTGGACGGCGG 59.462 47.619 13.24 0.00 32.32 6.13
4759 6785 8.035984 GCCCTTAAAATACGCTATTAGAGAGAT 58.964 37.037 1.14 0.00 0.00 2.75
4948 7244 1.545841 GATTGGGAGGCTTCCGTTTT 58.454 50.000 7.49 0.00 45.04 2.43
5055 7377 3.630312 AGCCGCACAAACTAAAAAGAAGA 59.370 39.130 0.00 0.00 0.00 2.87
5056 7378 3.975035 GCCGCACAAACTAAAAAGAAGAG 59.025 43.478 0.00 0.00 0.00 2.85
5256 7667 2.351418 TCTGTTGCTTCGTTGTTCACTG 59.649 45.455 0.00 0.00 0.00 3.66
5258 7669 2.095213 TGTTGCTTCGTTGTTCACTGAC 59.905 45.455 0.00 0.00 0.00 3.51
5279 7690 9.190317 ACTGACAAAAAGAATTCTAAAAGAGGT 57.810 29.630 8.75 1.37 0.00 3.85
5291 7702 5.773091 TCTAAAAGAGGTTCTTGGGGTTTT 58.227 37.500 0.00 0.00 36.71 2.43
5307 7718 7.138054 TGGGGTTTTGTTACCATTTATTTGT 57.862 32.000 0.00 0.00 40.09 2.83
5309 7720 7.147549 TGGGGTTTTGTTACCATTTATTTGTCA 60.148 33.333 0.00 0.00 40.09 3.58
5350 7761 1.963515 CTTGGGTCTTGGTTTTGGAGG 59.036 52.381 0.00 0.00 0.00 4.30
5385 7852 3.438781 GTGTGTGTGTCTTGTTCTTTGGA 59.561 43.478 0.00 0.00 0.00 3.53
5386 7853 4.075682 TGTGTGTGTCTTGTTCTTTGGAA 58.924 39.130 0.00 0.00 0.00 3.53
5390 7857 6.589907 GTGTGTGTCTTGTTCTTTGGAATTTT 59.410 34.615 0.00 0.00 33.71 1.82
5392 7859 6.035975 GTGTGTCTTGTTCTTTGGAATTTTGG 59.964 38.462 0.00 0.00 33.71 3.28
5399 7866 7.986085 TGTTCTTTGGAATTTTGGTTTTTGA 57.014 28.000 0.00 0.00 33.71 2.69
5576 9697 7.993183 ACCATCTTATCTTCGTATGGTTGATTT 59.007 33.333 0.00 0.00 46.28 2.17
5587 9708 7.340256 TCGTATGGTTGATTTTACCCATTACT 58.660 34.615 0.00 0.00 38.58 2.24
5599 9720 6.767524 TTACCCATTACTTGTAGCATTTGG 57.232 37.500 0.00 0.00 0.00 3.28
5713 9838 0.403271 ATATCCTGGCTGCCATCCAC 59.597 55.000 23.64 0.00 30.82 4.02
5715 9840 1.652187 ATCCTGGCTGCCATCCACAT 61.652 55.000 23.64 6.96 30.82 3.21
5730 9855 3.295973 TCCACATCCATCTCGTACATGA 58.704 45.455 0.00 0.00 0.00 3.07
5731 9856 3.897505 TCCACATCCATCTCGTACATGAT 59.102 43.478 0.00 0.00 0.00 2.45
5740 9867 4.505313 TCTCGTACATGATATGTCCAGC 57.495 45.455 0.00 0.00 43.67 4.85
5758 9885 3.002791 CAGCAGATCTAACAGGCGAAAA 58.997 45.455 0.00 0.00 0.00 2.29
5760 9887 3.686726 AGCAGATCTAACAGGCGAAAAAG 59.313 43.478 0.00 0.00 0.00 2.27
5768 9895 2.084546 ACAGGCGAAAAAGGTATCAGC 58.915 47.619 0.00 0.00 0.00 4.26
5816 9946 4.021104 TGTGATGTAAAGGTGAGGAGTCAG 60.021 45.833 0.00 0.00 31.53 3.51
5830 9963 3.074687 AGGAGTCAGTACCTTCTGTCTGA 59.925 47.826 0.00 0.00 34.94 3.27
5876 10009 4.067896 TGGATTGACAAACTGAAGCTCTC 58.932 43.478 0.00 0.00 0.00 3.20
5877 10010 3.438434 GGATTGACAAACTGAAGCTCTCC 59.562 47.826 0.00 0.00 0.00 3.71
5878 10011 3.558931 TTGACAAACTGAAGCTCTCCA 57.441 42.857 0.00 0.00 0.00 3.86
5879 10012 3.777106 TGACAAACTGAAGCTCTCCAT 57.223 42.857 0.00 0.00 0.00 3.41
5880 10013 4.890158 TGACAAACTGAAGCTCTCCATA 57.110 40.909 0.00 0.00 0.00 2.74
5881 10014 5.227569 TGACAAACTGAAGCTCTCCATAA 57.772 39.130 0.00 0.00 0.00 1.90
5882 10015 5.809001 TGACAAACTGAAGCTCTCCATAAT 58.191 37.500 0.00 0.00 0.00 1.28
5883 10016 5.877012 TGACAAACTGAAGCTCTCCATAATC 59.123 40.000 0.00 0.00 0.00 1.75
5884 10017 5.189180 ACAAACTGAAGCTCTCCATAATCC 58.811 41.667 0.00 0.00 0.00 3.01
5885 10018 4.429854 AACTGAAGCTCTCCATAATCCC 57.570 45.455 0.00 0.00 0.00 3.85
5886 10019 3.663198 ACTGAAGCTCTCCATAATCCCT 58.337 45.455 0.00 0.00 0.00 4.20
5887 10020 4.043596 ACTGAAGCTCTCCATAATCCCTT 58.956 43.478 0.00 0.00 0.00 3.95
5888 10021 5.219739 ACTGAAGCTCTCCATAATCCCTTA 58.780 41.667 0.00 0.00 0.00 2.69
5889 10022 5.848921 ACTGAAGCTCTCCATAATCCCTTAT 59.151 40.000 0.00 0.00 0.00 1.73
5890 10023 6.331307 ACTGAAGCTCTCCATAATCCCTTATT 59.669 38.462 0.00 0.00 0.00 1.40
5891 10024 7.147230 ACTGAAGCTCTCCATAATCCCTTATTT 60.147 37.037 0.00 0.00 0.00 1.40
5892 10025 8.275187 TGAAGCTCTCCATAATCCCTTATTTA 57.725 34.615 0.00 0.00 0.00 1.40
5893 10026 8.894592 TGAAGCTCTCCATAATCCCTTATTTAT 58.105 33.333 0.00 0.00 0.00 1.40
5894 10027 9.389755 GAAGCTCTCCATAATCCCTTATTTATC 57.610 37.037 0.00 0.00 0.00 1.75
5895 10028 7.560368 AGCTCTCCATAATCCCTTATTTATCG 58.440 38.462 0.00 0.00 0.00 2.92
5896 10029 6.763610 GCTCTCCATAATCCCTTATTTATCGG 59.236 42.308 0.00 0.00 0.00 4.18
5897 10030 7.581658 GCTCTCCATAATCCCTTATTTATCGGT 60.582 40.741 0.00 0.00 0.00 4.69
5898 10031 8.214721 TCTCCATAATCCCTTATTTATCGGTT 57.785 34.615 0.00 0.00 0.00 4.44
5899 10032 8.665906 TCTCCATAATCCCTTATTTATCGGTTT 58.334 33.333 0.00 0.00 0.00 3.27
5900 10033 8.857694 TCCATAATCCCTTATTTATCGGTTTC 57.142 34.615 0.00 0.00 0.00 2.78
5901 10034 8.665906 TCCATAATCCCTTATTTATCGGTTTCT 58.334 33.333 0.00 0.00 0.00 2.52
5902 10035 9.297037 CCATAATCCCTTATTTATCGGTTTCTT 57.703 33.333 0.00 0.00 0.00 2.52
5906 10039 9.475620 AATCCCTTATTTATCGGTTTCTTTCTT 57.524 29.630 0.00 0.00 0.00 2.52
5907 10040 8.873186 TCCCTTATTTATCGGTTTCTTTCTTT 57.127 30.769 0.00 0.00 0.00 2.52
5908 10041 9.304335 TCCCTTATTTATCGGTTTCTTTCTTTT 57.696 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.203907 TTGGGTGGGCCATTTGGG 60.204 61.111 10.70 0.00 40.85 4.12
7 8 1.536174 AGTTGGGTGGGCCATTTGG 60.536 57.895 10.70 0.00 36.17 3.28
9 10 0.116940 ATCAGTTGGGTGGGCCATTT 59.883 50.000 10.70 0.00 36.17 2.32
10 11 1.006813 TATCAGTTGGGTGGGCCATT 58.993 50.000 10.70 0.00 36.17 3.16
11 12 1.006813 TTATCAGTTGGGTGGGCCAT 58.993 50.000 10.70 0.00 36.17 4.40
12 13 0.331278 CTTATCAGTTGGGTGGGCCA 59.669 55.000 0.00 0.00 36.17 5.36
13 14 0.623723 TCTTATCAGTTGGGTGGGCC 59.376 55.000 0.00 0.00 0.00 5.80
14 15 2.507407 TTCTTATCAGTTGGGTGGGC 57.493 50.000 0.00 0.00 0.00 5.36
15 16 4.137543 GCTATTCTTATCAGTTGGGTGGG 58.862 47.826 0.00 0.00 0.00 4.61
42 43 8.974060 ATGTTGTTTCTTTCTTCAGTTAGGTA 57.026 30.769 0.00 0.00 0.00 3.08
174 175 9.585099 TCCGTAAAGAAATATAAGAGCGTTTAA 57.415 29.630 0.00 0.00 0.00 1.52
858 1335 1.557269 GGGGACTCACCTCATGCACT 61.557 60.000 0.00 0.00 39.39 4.40
887 1364 8.200024 TCTATGAGAAAATAGAAGGAGATGGG 57.800 38.462 0.00 0.00 36.45 4.00
958 1435 4.070716 GTTGCTGGAGAATATGCTGCTAT 58.929 43.478 3.58 0.00 43.34 2.97
1272 2746 1.604593 GTGTGGCTTGATGGCTGGT 60.605 57.895 0.00 0.00 42.34 4.00
1370 2844 0.992802 GACGCGGACTTTGATGTCTC 59.007 55.000 12.47 0.00 37.16 3.36
1380 2854 4.070552 GCCTCCTTGACGCGGACT 62.071 66.667 12.47 0.00 0.00 3.85
1459 2933 1.968050 AATAGGCGAGGGTCAACCGG 61.968 60.000 0.00 0.00 46.96 5.28
1773 3262 4.520492 CCTTGGAGTTTGTTGATTAGCTGT 59.480 41.667 0.00 0.00 0.00 4.40
1840 3427 8.383175 TCTCCCCCATTTACTATTTGATGTATC 58.617 37.037 0.00 0.00 0.00 2.24
2015 3734 2.159014 ACCCAAATTATGCGCGAGTAGA 60.159 45.455 12.10 0.00 0.00 2.59
2016 3735 2.210116 ACCCAAATTATGCGCGAGTAG 58.790 47.619 12.10 0.00 0.00 2.57
2018 3737 1.132262 CAACCCAAATTATGCGCGAGT 59.868 47.619 12.10 0.00 0.00 4.18
2019 3738 1.533756 CCAACCCAAATTATGCGCGAG 60.534 52.381 12.10 0.00 0.00 5.03
2022 3741 0.820871 TCCCAACCCAAATTATGCGC 59.179 50.000 0.00 0.00 0.00 6.09
2024 3743 3.118775 GGAAGTCCCAACCCAAATTATGC 60.119 47.826 0.00 0.00 34.14 3.14
2221 3960 0.475906 GAATCAGGACATGGAGGGGG 59.524 60.000 0.00 0.00 0.00 5.40
2864 4620 9.708222 CACTTCCATATCAAACTATCTTTTTCG 57.292 33.333 0.00 0.00 0.00 3.46
3129 4903 0.249073 ACTAGCCTACGAGCATTGCG 60.249 55.000 2.38 0.00 34.23 4.85
3252 5026 1.873591 AGCTAGGACACGCAAAACTTG 59.126 47.619 0.00 0.00 0.00 3.16
3311 5085 3.375782 AACTTTCCAACATGCTCAAGC 57.624 42.857 0.00 0.00 42.50 4.01
3362 5136 2.435805 TGGGAGCTCACTGATACCAATC 59.564 50.000 18.70 0.00 0.00 2.67
3839 5651 1.691434 AGAAGCGAGGGATTGATCCTC 59.309 52.381 9.73 2.63 46.35 3.71
4450 6459 5.456474 CGGAGGGAGTACTTAGATAGGAAGT 60.456 48.000 0.00 0.00 40.27 3.01
4453 6462 3.979347 ACGGAGGGAGTACTTAGATAGGA 59.021 47.826 0.00 0.00 0.00 2.94
4474 6483 3.771577 ATACATCCATTCTTCCGGGAC 57.228 47.619 0.00 0.00 32.60 4.46
4475 6484 4.788925 AAATACATCCATTCTTCCGGGA 57.211 40.909 0.00 0.00 34.70 5.14
4476 6485 6.952773 TTTAAATACATCCATTCTTCCGGG 57.047 37.500 0.00 0.00 0.00 5.73
4477 6486 6.863126 GCATTTAAATACATCCATTCTTCCGG 59.137 38.462 0.00 0.00 0.00 5.14
4478 6487 7.424803 TGCATTTAAATACATCCATTCTTCCG 58.575 34.615 0.00 0.00 0.00 4.30
4479 6488 9.768662 AATGCATTTAAATACATCCATTCTTCC 57.231 29.630 13.16 0.00 0.00 3.46
4516 6525 9.768662 GGCAAAAATGAATAGAAATGGATGTAT 57.231 29.630 0.00 0.00 0.00 2.29
4517 6526 8.756927 TGGCAAAAATGAATAGAAATGGATGTA 58.243 29.630 0.00 0.00 0.00 2.29
4518 6527 7.550196 GTGGCAAAAATGAATAGAAATGGATGT 59.450 33.333 0.00 0.00 0.00 3.06
4519 6528 7.549842 TGTGGCAAAAATGAATAGAAATGGATG 59.450 33.333 0.00 0.00 0.00 3.51
4520 6529 7.622713 TGTGGCAAAAATGAATAGAAATGGAT 58.377 30.769 0.00 0.00 0.00 3.41
4521 6530 7.002250 TGTGGCAAAAATGAATAGAAATGGA 57.998 32.000 0.00 0.00 0.00 3.41
4522 6531 7.388500 ACTTGTGGCAAAAATGAATAGAAATGG 59.612 33.333 0.00 0.00 0.00 3.16
4523 6532 8.314143 ACTTGTGGCAAAAATGAATAGAAATG 57.686 30.769 0.00 0.00 0.00 2.32
4524 6533 9.995003 TTACTTGTGGCAAAAATGAATAGAAAT 57.005 25.926 0.00 0.00 0.00 2.17
4525 6534 9.995003 ATTACTTGTGGCAAAAATGAATAGAAA 57.005 25.926 0.00 0.00 0.00 2.52
4526 6535 9.995003 AATTACTTGTGGCAAAAATGAATAGAA 57.005 25.926 0.00 0.00 0.00 2.10
4527 6536 9.995003 AAATTACTTGTGGCAAAAATGAATAGA 57.005 25.926 0.00 0.00 0.00 1.98
4530 6539 8.351461 CCAAAATTACTTGTGGCAAAAATGAAT 58.649 29.630 0.00 0.00 0.00 2.57
4531 6540 7.554118 TCCAAAATTACTTGTGGCAAAAATGAA 59.446 29.630 0.00 0.00 0.00 2.57
4532 6541 7.011857 GTCCAAAATTACTTGTGGCAAAAATGA 59.988 33.333 0.00 0.00 0.00 2.57
4533 6542 7.131565 GTCCAAAATTACTTGTGGCAAAAATG 58.868 34.615 0.00 0.00 0.00 2.32
4534 6543 6.018343 CGTCCAAAATTACTTGTGGCAAAAAT 60.018 34.615 0.00 0.00 0.00 1.82
4535 6544 5.292101 CGTCCAAAATTACTTGTGGCAAAAA 59.708 36.000 0.00 0.00 0.00 1.94
4536 6545 4.806247 CGTCCAAAATTACTTGTGGCAAAA 59.194 37.500 0.00 0.00 0.00 2.44
4537 6546 4.363999 CGTCCAAAATTACTTGTGGCAAA 58.636 39.130 0.00 0.00 0.00 3.68
4538 6547 3.243569 CCGTCCAAAATTACTTGTGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
4539 6548 2.294791 CCGTCCAAAATTACTTGTGGCA 59.705 45.455 0.00 0.00 0.00 4.92
4540 6549 2.924880 GCCGTCCAAAATTACTTGTGGC 60.925 50.000 0.00 3.65 33.13 5.01
4541 6550 2.667171 CGCCGTCCAAAATTACTTGTGG 60.667 50.000 0.00 0.00 0.00 4.17
4542 6551 2.580589 CGCCGTCCAAAATTACTTGTG 58.419 47.619 0.00 0.00 0.00 3.33
4543 6552 1.538075 CCGCCGTCCAAAATTACTTGT 59.462 47.619 0.00 0.00 0.00 3.16
4544 6553 1.135517 CCCGCCGTCCAAAATTACTTG 60.136 52.381 0.00 0.00 0.00 3.16
4545 6554 1.170442 CCCGCCGTCCAAAATTACTT 58.830 50.000 0.00 0.00 0.00 2.24
4546 6555 0.325602 TCCCGCCGTCCAAAATTACT 59.674 50.000 0.00 0.00 0.00 2.24
4547 6556 0.730840 CTCCCGCCGTCCAAAATTAC 59.269 55.000 0.00 0.00 0.00 1.89
4548 6557 0.325602 ACTCCCGCCGTCCAAAATTA 59.674 50.000 0.00 0.00 0.00 1.40
4549 6558 0.325602 TACTCCCGCCGTCCAAAATT 59.674 50.000 0.00 0.00 0.00 1.82
4550 6559 0.544697 ATACTCCCGCCGTCCAAAAT 59.455 50.000 0.00 0.00 0.00 1.82
4551 6560 0.325602 AATACTCCCGCCGTCCAAAA 59.674 50.000 0.00 0.00 0.00 2.44
4552 6561 0.325602 AAATACTCCCGCCGTCCAAA 59.674 50.000 0.00 0.00 0.00 3.28
4553 6562 1.193323 TAAATACTCCCGCCGTCCAA 58.807 50.000 0.00 0.00 0.00 3.53
4554 6563 1.342174 GATAAATACTCCCGCCGTCCA 59.658 52.381 0.00 0.00 0.00 4.02
4555 6564 1.617357 AGATAAATACTCCCGCCGTCC 59.383 52.381 0.00 0.00 0.00 4.79
4556 6565 2.673833 CAGATAAATACTCCCGCCGTC 58.326 52.381 0.00 0.00 0.00 4.79
4557 6566 1.270147 GCAGATAAATACTCCCGCCGT 60.270 52.381 0.00 0.00 0.00 5.68
4558 6567 1.270094 TGCAGATAAATACTCCCGCCG 60.270 52.381 0.00 0.00 0.00 6.46
4559 6568 2.143925 GTGCAGATAAATACTCCCGCC 58.856 52.381 0.00 0.00 0.00 6.13
4560 6569 2.143925 GGTGCAGATAAATACTCCCGC 58.856 52.381 0.00 0.00 0.00 6.13
4561 6570 3.753294 AGGTGCAGATAAATACTCCCG 57.247 47.619 0.00 0.00 0.00 5.14
4562 6571 4.781934 ACAAGGTGCAGATAAATACTCCC 58.218 43.478 0.00 0.00 0.00 4.30
4563 6572 6.759497 AAACAAGGTGCAGATAAATACTCC 57.241 37.500 0.00 0.00 0.00 3.85
4759 6785 9.902196 TCTCGCTAAATAAATCGATGTACAATA 57.098 29.630 0.00 0.00 0.00 1.90
4782 6808 0.315568 AGCGTCCCGAGCAATATCTC 59.684 55.000 0.00 0.00 37.01 2.75
5019 7332 1.070821 GCGGCTTTTCCATTTCTTGC 58.929 50.000 0.00 0.00 34.01 4.01
5307 7718 2.370349 ACAAACCCAAACGACACATGA 58.630 42.857 0.00 0.00 0.00 3.07
5309 7720 4.394729 AGATACAAACCCAAACGACACAT 58.605 39.130 0.00 0.00 0.00 3.21
5385 7852 6.916909 ACCCCCTAAATCAAAAACCAAAATT 58.083 32.000 0.00 0.00 0.00 1.82
5386 7853 6.523035 ACCCCCTAAATCAAAAACCAAAAT 57.477 33.333 0.00 0.00 0.00 1.82
5390 7857 3.574826 CGAACCCCCTAAATCAAAAACCA 59.425 43.478 0.00 0.00 0.00 3.67
5392 7859 5.047590 ACATCGAACCCCCTAAATCAAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
5399 7866 6.472887 CATATACACATCGAACCCCCTAAAT 58.527 40.000 0.00 0.00 0.00 1.40
5403 7870 2.637872 CCATATACACATCGAACCCCCT 59.362 50.000 0.00 0.00 0.00 4.79
5576 9697 6.486056 TCCAAATGCTACAAGTAATGGGTAA 58.514 36.000 0.00 0.00 0.00 2.85
5587 9708 4.202461 ACTCTGGTTCTCCAAATGCTACAA 60.202 41.667 0.00 0.00 43.81 2.41
5599 9720 2.548875 CAGCTGCATACTCTGGTTCTC 58.451 52.381 0.00 0.00 0.00 2.87
5713 9838 6.038985 GGACATATCATGTACGAGATGGATG 58.961 44.000 9.42 8.53 45.03 3.51
5715 9840 5.644977 GGACATATCATGTACGAGATGGA 57.355 43.478 9.42 0.00 45.03 3.41
5730 9855 4.262808 GCCTGTTAGATCTGCTGGACATAT 60.263 45.833 21.02 0.00 0.00 1.78
5731 9856 3.070159 GCCTGTTAGATCTGCTGGACATA 59.930 47.826 21.02 0.00 0.00 2.29
5740 9867 4.003648 ACCTTTTTCGCCTGTTAGATCTG 58.996 43.478 5.18 0.00 0.00 2.90
5758 9885 4.443978 AACATGCCATAGCTGATACCTT 57.556 40.909 0.00 0.00 40.80 3.50
5760 9887 5.707298 ACATAAACATGCCATAGCTGATACC 59.293 40.000 0.00 0.00 40.80 2.73
5794 9922 4.021016 ACTGACTCCTCACCTTTACATCAC 60.021 45.833 0.00 0.00 0.00 3.06
5876 10009 8.863872 AGAAACCGATAAATAAGGGATTATGG 57.136 34.615 0.00 0.00 0.00 2.74
5880 10013 9.475620 AAGAAAGAAACCGATAAATAAGGGATT 57.524 29.630 0.00 0.00 0.00 3.01
5881 10014 9.475620 AAAGAAAGAAACCGATAAATAAGGGAT 57.524 29.630 0.00 0.00 0.00 3.85
5882 10015 8.873186 AAAGAAAGAAACCGATAAATAAGGGA 57.127 30.769 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.