Multiple sequence alignment - TraesCS7D01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G007500 chr7D 100.000 4343 0 0 1 4343 3688088 3692430 0.000000e+00 8021.0
1 TraesCS7D01G007500 chr7D 81.238 2505 391 47 260 2721 2409278 2411746 0.000000e+00 1949.0
2 TraesCS7D01G007500 chr7D 80.007 2716 419 67 132 2781 2651554 2654211 0.000000e+00 1893.0
3 TraesCS7D01G007500 chr7D 79.590 2631 429 61 207 2781 3857866 3855288 0.000000e+00 1784.0
4 TraesCS7D01G007500 chr7D 87.101 690 66 13 3502 4179 3209665 3208987 0.000000e+00 760.0
5 TraesCS7D01G007500 chr7D 73.793 2030 412 63 303 2259 10498633 10496651 0.000000e+00 691.0
6 TraesCS7D01G007500 chr7D 82.535 710 105 11 1591 2298 2625213 2624521 1.340000e-169 606.0
7 TraesCS7D01G007500 chr7D 86.207 145 15 5 3228 3370 3209870 3209729 7.520000e-33 152.0
8 TraesCS7D01G007500 chr7D 94.792 96 5 0 4180 4275 3593974 3594069 2.710000e-32 150.0
9 TraesCS7D01G007500 chr7D 89.216 102 9 1 2197 2298 3894581 3894680 4.560000e-25 126.0
10 TraesCS7D01G007500 chr7D 78.059 237 25 11 3509 3745 2888916 2888707 1.640000e-24 124.0
11 TraesCS7D01G007500 chr7D 92.045 88 7 0 4180 4267 3443280 3443367 1.640000e-24 124.0
12 TraesCS7D01G007500 chr7D 86.111 108 15 0 2073 2180 3894480 3894587 2.740000e-22 117.0
13 TraesCS7D01G007500 chr7D 79.021 143 21 7 3457 3593 2411860 2411999 5.980000e-14 89.8
14 TraesCS7D01G007500 chr7D 84.000 75 8 1 3791 3861 2886777 2886703 7.790000e-08 69.4
15 TraesCS7D01G007500 chr4A 91.163 2931 217 21 14 2927 740209672 740206767 0.000000e+00 3940.0
16 TraesCS7D01G007500 chr4A 80.932 2617 422 46 209 2781 742035175 742032592 0.000000e+00 1997.0
17 TraesCS7D01G007500 chr4A 80.534 2620 421 49 209 2781 739629587 739627010 0.000000e+00 1930.0
18 TraesCS7D01G007500 chr4A 78.694 2633 423 73 209 2781 740540255 740537701 0.000000e+00 1628.0
19 TraesCS7D01G007500 chr4A 83.947 679 63 22 3511 4179 739911914 739911272 3.710000e-170 608.0
20 TraesCS7D01G007500 chr4A 75.370 1352 272 37 301 1622 729637762 729639082 2.890000e-166 595.0
21 TraesCS7D01G007500 chr4A 87.049 471 38 9 3431 3889 740203755 740203296 1.080000e-140 510.0
22 TraesCS7D01G007500 chr4A 88.291 316 30 6 3526 3839 733903307 733902997 5.300000e-99 372.0
23 TraesCS7D01G007500 chr4A 78.391 435 43 23 3142 3540 740750650 740750231 7.260000e-58 235.0
24 TraesCS7D01G007500 chr4A 78.788 396 35 24 1903 2271 742127467 742127840 2.030000e-53 220.0
25 TraesCS7D01G007500 chr4A 78.535 396 36 25 1903 2271 739732232 739732605 9.460000e-52 215.0
26 TraesCS7D01G007500 chr4A 77.700 426 41 28 2999 3393 741413722 741413320 1.220000e-50 211.0
27 TraesCS7D01G007500 chr4A 93.893 131 7 1 3228 3357 740206256 740206126 3.430000e-46 196.0
28 TraesCS7D01G007500 chr4A 95.876 97 3 1 4180 4276 742267394 742267299 5.820000e-34 156.0
29 TraesCS7D01G007500 chr4A 96.667 90 2 1 4180 4269 739835654 739835742 9.730000e-32 148.0
30 TraesCS7D01G007500 chr4A 93.750 96 6 0 4180 4275 739810933 739811028 1.260000e-30 145.0
31 TraesCS7D01G007500 chr4A 91.346 104 8 1 3502 3604 739966874 739966977 1.630000e-29 141.0
32 TraesCS7D01G007500 chr4A 92.708 96 7 0 4180 4275 740865406 740865311 5.860000e-29 139.0
33 TraesCS7D01G007500 chr4A 85.401 137 14 4 3097 3231 742248809 742248941 2.110000e-28 137.0
34 TraesCS7D01G007500 chr4A 87.879 99 12 0 3272 3370 733907615 733907517 2.740000e-22 117.0
35 TraesCS7D01G007500 chr4A 96.610 59 2 0 4285 4343 733923981 733923923 9.940000e-17 99.0
36 TraesCS7D01G007500 chr4A 100.000 43 0 0 4291 4333 740864179 740864137 3.600000e-11 80.5
37 TraesCS7D01G007500 chr7A 80.412 2624 425 55 209 2781 2828215 2830800 0.000000e+00 1916.0
38 TraesCS7D01G007500 chr7A 80.386 2590 421 49 209 2746 2094261 2096815 0.000000e+00 1888.0
39 TraesCS7D01G007500 chr7A 81.095 2465 377 50 267 2683 3780579 3783002 0.000000e+00 1888.0
40 TraesCS7D01G007500 chr7A 75.773 1358 260 44 303 1626 8779912 8778590 4.770000e-174 621.0
41 TraesCS7D01G007500 chr7A 75.720 1355 258 43 303 1622 9009324 9010642 7.980000e-172 614.0
42 TraesCS7D01G007500 chr7A 87.727 220 25 2 2073 2292 2006520 2006303 5.570000e-64 255.0
43 TraesCS7D01G007500 chr7A 84.848 231 26 6 2073 2294 3217166 3216936 1.570000e-54 224.0
44 TraesCS7D01G007500 chr7A 93.069 101 7 0 4180 4280 2847926 2847826 9.730000e-32 148.0
45 TraesCS7D01G007500 chr7A 93.750 96 6 0 4180 4275 2550063 2549968 1.260000e-30 145.0
46 TraesCS7D01G007500 chr7A 93.750 96 6 0 4180 4275 2999659 2999564 1.260000e-30 145.0
47 TraesCS7D01G007500 chr7A 96.429 56 2 0 4288 4343 2846936 2846881 4.620000e-15 93.5
48 TraesCS7D01G007500 chr7A 95.833 48 2 0 3814 3861 2936327 2936374 1.290000e-10 78.7
49 TraesCS7D01G007500 chr7A 83.871 93 4 5 3021 3103 3784000 3784091 1.290000e-10 78.7
50 TraesCS7D01G007500 chr5D 74.028 1517 298 61 803 2257 29563566 29562084 8.270000e-147 531.0
51 TraesCS7D01G007500 chr5B 73.925 1070 199 46 803 1832 21695739 21694710 1.490000e-94 357.0
52 TraesCS7D01G007500 chr5B 71.184 701 155 27 1196 1889 510510418 510511078 9.800000e-27 132.0
53 TraesCS7D01G007500 chr7B 87.013 154 14 3 3511 3664 708469875 708469728 7.470000e-38 169.0
54 TraesCS7D01G007500 chr7B 84.247 146 11 6 3100 3233 708497280 708497135 9.800000e-27 132.0
55 TraesCS7D01G007500 chr7B 89.189 74 7 1 3405 3477 708496956 708496883 1.660000e-14 91.6
56 TraesCS7D01G007500 chr7B 85.106 94 3 4 3006 3089 708497439 708497347 7.740000e-13 86.1
57 TraesCS7D01G007500 chr7B 76.510 149 11 8 3729 3861 708469727 708469587 4.690000e-05 60.2
58 TraesCS7D01G007500 chr1D 84.024 169 14 9 3508 3668 456804252 456804415 2.710000e-32 150.0
59 TraesCS7D01G007500 chr1D 88.189 127 11 2 3105 3231 456803903 456804025 9.730000e-32 148.0
60 TraesCS7D01G007500 chr5A 73.318 431 83 19 1196 1620 536353361 536353765 3.520000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G007500 chr7D 3688088 3692430 4342 False 8021.000000 8021 100.000000 1 4343 1 chr7D.!!$F4 4342
1 TraesCS7D01G007500 chr7D 2651554 2654211 2657 False 1893.000000 1893 80.007000 132 2781 1 chr7D.!!$F1 2649
2 TraesCS7D01G007500 chr7D 3855288 3857866 2578 True 1784.000000 1784 79.590000 207 2781 1 chr7D.!!$R2 2574
3 TraesCS7D01G007500 chr7D 2409278 2411999 2721 False 1019.400000 1949 80.129500 260 3593 2 chr7D.!!$F5 3333
4 TraesCS7D01G007500 chr7D 10496651 10498633 1982 True 691.000000 691 73.793000 303 2259 1 chr7D.!!$R3 1956
5 TraesCS7D01G007500 chr7D 2624521 2625213 692 True 606.000000 606 82.535000 1591 2298 1 chr7D.!!$R1 707
6 TraesCS7D01G007500 chr7D 3208987 3209870 883 True 456.000000 760 86.654000 3228 4179 2 chr7D.!!$R5 951
7 TraesCS7D01G007500 chr4A 742032592 742035175 2583 True 1997.000000 1997 80.932000 209 2781 1 chr4A.!!$R9 2572
8 TraesCS7D01G007500 chr4A 739627010 739629587 2577 True 1930.000000 1930 80.534000 209 2781 1 chr4A.!!$R4 2572
9 TraesCS7D01G007500 chr4A 740537701 740540255 2554 True 1628.000000 1628 78.694000 209 2781 1 chr4A.!!$R6 2572
10 TraesCS7D01G007500 chr4A 740203296 740209672 6376 True 1548.666667 3940 90.701667 14 3889 3 chr4A.!!$R11 3875
11 TraesCS7D01G007500 chr4A 739911272 739911914 642 True 608.000000 608 83.947000 3511 4179 1 chr4A.!!$R5 668
12 TraesCS7D01G007500 chr4A 729637762 729639082 1320 False 595.000000 595 75.370000 301 1622 1 chr4A.!!$F1 1321
13 TraesCS7D01G007500 chr7A 2828215 2830800 2585 False 1916.000000 1916 80.412000 209 2781 1 chr7A.!!$F2 2572
14 TraesCS7D01G007500 chr7A 2094261 2096815 2554 False 1888.000000 1888 80.386000 209 2746 1 chr7A.!!$F1 2537
15 TraesCS7D01G007500 chr7A 3780579 3784091 3512 False 983.350000 1888 82.483000 267 3103 2 chr7A.!!$F5 2836
16 TraesCS7D01G007500 chr7A 8778590 8779912 1322 True 621.000000 621 75.773000 303 1626 1 chr7A.!!$R5 1323
17 TraesCS7D01G007500 chr7A 9009324 9010642 1318 False 614.000000 614 75.720000 303 1622 1 chr7A.!!$F4 1319
18 TraesCS7D01G007500 chr5D 29562084 29563566 1482 True 531.000000 531 74.028000 803 2257 1 chr5D.!!$R1 1454
19 TraesCS7D01G007500 chr5B 21694710 21695739 1029 True 357.000000 357 73.925000 803 1832 1 chr5B.!!$R1 1029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 709 0.322187 GTTATGCACCGACCTGGGTT 60.322 55.0 0.0 0.0 44.64 4.11 F
1856 2002 0.532115 CCCTTTGTTACCATGCTGGC 59.468 55.0 2.5 0.0 42.67 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 2167 1.410004 TCCACCGTGATCCATAGGTC 58.590 55.0 0.0 0.0 34.25 3.85 R
3665 6508 0.036388 TTCATCTCCGTTCCTGTGGC 60.036 55.0 0.0 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.571372 GAAGATTCTACCGAGTACCCAG 57.429 50.000 0.00 0.00 0.00 4.45
33 34 4.275443 CCGAGTACCCAGTGATAAGTAGTC 59.725 50.000 0.00 0.19 33.64 2.59
35 36 5.108187 AGTACCCAGTGATAAGTAGTCGA 57.892 43.478 0.00 0.00 0.00 4.20
36 37 5.503927 AGTACCCAGTGATAAGTAGTCGAA 58.496 41.667 0.00 0.00 0.00 3.71
39 40 5.476614 ACCCAGTGATAAGTAGTCGAAAAC 58.523 41.667 0.00 0.00 0.00 2.43
45 46 6.798959 AGTGATAAGTAGTCGAAAACGTACAC 59.201 38.462 0.00 3.53 0.00 2.90
51 52 2.154389 AGTCGAAAACGTACACGATTGC 59.846 45.455 9.04 0.48 43.02 3.56
59 60 0.446222 GTACACGATTGCCAACGCAT 59.554 50.000 0.00 0.00 46.67 4.73
66 67 0.895100 ATTGCCAACGCATGTCCACT 60.895 50.000 0.00 0.00 46.67 4.00
74 75 1.517257 GCATGTCCACTCGAGTCCG 60.517 63.158 16.96 9.05 37.07 4.79
75 76 1.139734 CATGTCCACTCGAGTCCGG 59.860 63.158 16.96 15.43 36.24 5.14
97 98 4.336153 GGTTTACCGAGAACAAAACTTGGA 59.664 41.667 0.00 0.00 40.36 3.53
98 99 5.163632 GGTTTACCGAGAACAAAACTTGGAA 60.164 40.000 0.00 0.00 40.36 3.53
102 103 4.218852 ACCGAGAACAAAACTTGGAAAACA 59.781 37.500 0.00 0.00 40.36 2.83
106 107 6.399564 CGAGAACAAAACTTGGAAAACACAAC 60.400 38.462 0.00 0.00 34.12 3.32
188 190 4.388485 ACATTTTCCCCATTCAGTTTTGC 58.612 39.130 0.00 0.00 0.00 3.68
228 255 8.455903 TTCATTCATTCATTCAGTTCCCTATC 57.544 34.615 0.00 0.00 0.00 2.08
229 256 7.000472 TCATTCATTCATTCAGTTCCCTATCC 59.000 38.462 0.00 0.00 0.00 2.59
230 257 5.310409 TCATTCATTCAGTTCCCTATCCC 57.690 43.478 0.00 0.00 0.00 3.85
231 258 4.104738 TCATTCATTCAGTTCCCTATCCCC 59.895 45.833 0.00 0.00 0.00 4.81
232 259 3.438131 TCATTCAGTTCCCTATCCCCT 57.562 47.619 0.00 0.00 0.00 4.79
233 260 3.318313 TCATTCAGTTCCCTATCCCCTC 58.682 50.000 0.00 0.00 0.00 4.30
234 261 3.051032 TCATTCAGTTCCCTATCCCCTCT 60.051 47.826 0.00 0.00 0.00 3.69
235 262 3.508952 TTCAGTTCCCTATCCCCTCTT 57.491 47.619 0.00 0.00 0.00 2.85
236 263 2.764269 TCAGTTCCCTATCCCCTCTTG 58.236 52.381 0.00 0.00 0.00 3.02
237 264 1.141858 CAGTTCCCTATCCCCTCTTGC 59.858 57.143 0.00 0.00 0.00 4.01
238 265 1.010170 AGTTCCCTATCCCCTCTTGCT 59.990 52.381 0.00 0.00 0.00 3.91
239 266 1.418264 GTTCCCTATCCCCTCTTGCTC 59.582 57.143 0.00 0.00 0.00 4.26
240 267 0.944999 TCCCTATCCCCTCTTGCTCT 59.055 55.000 0.00 0.00 0.00 4.09
241 268 1.055040 CCCTATCCCCTCTTGCTCTG 58.945 60.000 0.00 0.00 0.00 3.35
242 269 0.396060 CCTATCCCCTCTTGCTCTGC 59.604 60.000 0.00 0.00 0.00 4.26
243 270 1.422531 CTATCCCCTCTTGCTCTGCT 58.577 55.000 0.00 0.00 0.00 4.24
244 271 2.603021 CTATCCCCTCTTGCTCTGCTA 58.397 52.381 0.00 0.00 0.00 3.49
245 272 1.422531 ATCCCCTCTTGCTCTGCTAG 58.577 55.000 0.00 0.00 33.07 3.42
264 291 8.424133 TCTGCTAGCTTCATCTATCATTGTAAA 58.576 33.333 17.23 0.00 0.00 2.01
317 345 7.447374 TTTGGTACATAGGTTCTTCATTGTG 57.553 36.000 0.00 0.00 39.30 3.33
465 493 8.334263 TGTTAATGATCATGTGTACACAATGT 57.666 30.769 31.01 19.19 45.41 2.71
473 501 5.466393 TCATGTGTACACAATGTCAACTCTG 59.534 40.000 31.01 19.85 45.41 3.35
575 609 0.522076 CCGAAGCGCTCAAGAAATGC 60.522 55.000 12.06 0.00 0.00 3.56
663 697 4.505808 CATGAAATGGGCAAAGTTATGCA 58.494 39.130 10.72 0.00 42.64 3.96
675 709 0.322187 GTTATGCACCGACCTGGGTT 60.322 55.000 0.00 0.00 44.64 4.11
714 748 6.293298 CGATGAGCTATTTTCAAGAATGAGGG 60.293 42.308 0.00 0.00 36.78 4.30
964 1010 2.424601 CAACCTATTGATGCCAGTGGTG 59.575 50.000 11.74 0.00 38.15 4.17
1102 1160 3.439540 GCAAAATCCGCCGGCTGA 61.440 61.111 26.68 24.98 0.00 4.26
1161 1231 2.248248 TCTCTTGTCCGGTCATTGACT 58.752 47.619 16.02 0.00 32.47 3.41
1479 1561 4.065088 TGAAACAAGATGTAGGAGCACAC 58.935 43.478 0.00 0.00 0.00 3.82
1500 1582 3.119291 CAGAATGAGTAAGCTACAGGCG 58.881 50.000 0.00 0.00 42.84 5.52
1511 1593 1.291877 CTACAGGCGTGGTTGTCAGC 61.292 60.000 11.67 0.00 0.00 4.26
1604 1689 7.670140 ACTCATGGATCATATGAAGCATTTGAT 59.330 33.333 9.99 11.40 42.21 2.57
1687 1815 1.303309 CATCAAGGGGTTCATCGAGC 58.697 55.000 0.00 0.00 0.00 5.03
1770 1898 4.379302 AGACTTGCTGAATTTCTCCCTT 57.621 40.909 0.00 0.00 0.00 3.95
1772 1900 3.160269 ACTTGCTGAATTTCTCCCTTGG 58.840 45.455 0.00 0.00 0.00 3.61
1856 2002 0.532115 CCCTTTGTTACCATGCTGGC 59.468 55.000 2.50 0.00 42.67 4.85
1923 2078 2.025981 TGACATTATTGCTGCCCTGAGT 60.026 45.455 0.00 0.00 0.00 3.41
1966 2121 2.812591 CTGAAGCTGACTGCAACTCAAT 59.187 45.455 7.11 0.00 45.94 2.57
1983 2138 4.525487 ACTCAATTGGACAAGCACATCATT 59.475 37.500 5.42 0.00 0.00 2.57
2011 2167 2.686915 GGTGCATTCAGAATCCTGGAAG 59.313 50.000 0.00 0.00 40.76 3.46
2019 2175 3.969976 TCAGAATCCTGGAAGACCTATGG 59.030 47.826 0.00 0.00 40.76 2.74
2042 2201 0.320771 ACGGTGGAAGTGATGACTGC 60.321 55.000 0.00 0.00 30.61 4.40
2088 2247 1.741770 GTGCCTCAAATCGCTCCGT 60.742 57.895 0.00 0.00 0.00 4.69
2339 2513 0.546122 TCTCCACAGTGGCACAGTTT 59.454 50.000 21.41 0.00 40.27 2.66
2492 2702 6.981762 ATTTAGTCTCTTTGCTCTCATGTG 57.018 37.500 0.00 0.00 0.00 3.21
2643 2864 8.604890 GTGACTTCCTGCTGTAATAAATAAGTC 58.395 37.037 0.00 0.00 40.27 3.01
2684 2906 6.434652 TGGACATGTATTTGGTTATTTCGGTT 59.565 34.615 0.00 0.00 0.00 4.44
2703 2925 3.572255 GGTTCCAGTCAACTTAATTGGCA 59.428 43.478 0.00 0.00 46.04 4.92
2826 3065 3.356814 AAAAATAGCACGGGCCACT 57.643 47.368 5.73 0.00 42.56 4.00
2827 3066 2.500392 AAAAATAGCACGGGCCACTA 57.500 45.000 5.73 1.95 42.56 2.74
2828 3067 2.500392 AAAATAGCACGGGCCACTAA 57.500 45.000 5.73 0.00 42.56 2.24
2829 3068 2.729028 AAATAGCACGGGCCACTAAT 57.271 45.000 5.73 0.00 42.56 1.73
2830 3069 3.849563 AAATAGCACGGGCCACTAATA 57.150 42.857 5.73 0.00 42.56 0.98
2831 3070 3.402628 AATAGCACGGGCCACTAATAG 57.597 47.619 5.73 0.00 42.56 1.73
2837 3076 3.493699 GCACGGGCCACTAATAGTAATCA 60.494 47.826 4.39 0.00 0.00 2.57
2841 3080 4.202326 CGGGCCACTAATAGTAATCAACCT 60.202 45.833 4.39 0.00 0.00 3.50
2842 3081 5.306394 GGGCCACTAATAGTAATCAACCTC 58.694 45.833 4.39 0.00 0.00 3.85
2844 3083 6.409349 GGGCCACTAATAGTAATCAACCTCTT 60.409 42.308 4.39 0.00 0.00 2.85
2845 3084 7.054751 GGCCACTAATAGTAATCAACCTCTTT 58.945 38.462 0.00 0.00 0.00 2.52
2901 3149 6.176975 CAAGTTTGCATGCATTGAAATGAT 57.823 33.333 23.37 0.60 38.70 2.45
2906 3154 6.415798 TTGCATGCATTGAAATGATGAAAG 57.584 33.333 23.37 0.00 38.70 2.62
2920 3168 2.579410 TGAAAGTAACCTTGGGAGCC 57.421 50.000 0.00 0.00 0.00 4.70
2947 3251 1.226859 CCGTCACCGTATGTGCGAT 60.227 57.895 9.53 0.00 45.03 4.58
2970 3274 3.910490 GGCCGATCTGCTCTCGCT 61.910 66.667 9.11 0.00 36.97 4.93
2972 3276 2.051435 CCGATCTGCTCTCGCTCG 60.051 66.667 0.00 0.00 36.97 5.03
2974 3278 2.334653 GATCTGCTCTCGCTCGGG 59.665 66.667 0.00 0.00 36.97 5.14
2977 3281 1.112315 ATCTGCTCTCGCTCGGGATT 61.112 55.000 0.00 0.00 36.97 3.01
2978 3282 1.299773 CTGCTCTCGCTCGGGATTC 60.300 63.158 0.00 0.00 36.97 2.52
2979 3283 1.733402 CTGCTCTCGCTCGGGATTCT 61.733 60.000 0.00 0.00 36.97 2.40
2980 3284 1.323271 TGCTCTCGCTCGGGATTCTT 61.323 55.000 0.00 0.00 36.97 2.52
2981 3285 0.179097 GCTCTCGCTCGGGATTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
2982 3286 1.740718 GCTCTCGCTCGGGATTCTTTT 60.741 52.381 0.00 0.00 0.00 2.27
2984 3288 3.782046 CTCTCGCTCGGGATTCTTTTTA 58.218 45.455 0.00 0.00 0.00 1.52
2985 3289 4.372656 CTCTCGCTCGGGATTCTTTTTAT 58.627 43.478 0.00 0.00 0.00 1.40
2986 3290 4.369182 TCTCGCTCGGGATTCTTTTTATC 58.631 43.478 0.00 0.00 0.00 1.75
3027 3381 8.266473 TCCTACAGGTTCGGCTAAATAAATAAA 58.734 33.333 0.00 0.00 36.34 1.40
3053 3407 3.209410 ACAGTAGCAATTGCCTCTATGC 58.791 45.455 26.45 11.38 43.38 3.14
3056 3410 4.070716 AGTAGCAATTGCCTCTATGCATC 58.929 43.478 26.45 1.32 41.70 3.91
3062 3419 0.400381 TGCCTCTATGCATCCCTGGA 60.400 55.000 0.19 0.00 36.04 3.86
3071 3428 2.771762 ATCCCTGGAGGCAGGAGC 60.772 66.667 0.00 0.00 45.00 4.70
3074 3431 1.767672 CCCTGGAGGCAGGAGCATA 60.768 63.158 0.00 0.00 45.00 3.14
3094 3451 5.565439 GCATATGCTTGACCAGACTTGTTTT 60.565 40.000 20.64 0.00 38.21 2.43
3095 3452 4.574599 ATGCTTGACCAGACTTGTTTTC 57.425 40.909 0.00 0.00 0.00 2.29
3097 3454 2.034685 GCTTGACCAGACTTGTTTTCCC 59.965 50.000 0.00 0.00 0.00 3.97
3098 3455 3.555966 CTTGACCAGACTTGTTTTCCCT 58.444 45.455 0.00 0.00 0.00 4.20
3099 3456 3.208747 TGACCAGACTTGTTTTCCCTC 57.791 47.619 0.00 0.00 0.00 4.30
3100 3457 2.777692 TGACCAGACTTGTTTTCCCTCT 59.222 45.455 0.00 0.00 0.00 3.69
3101 3458 3.181454 TGACCAGACTTGTTTTCCCTCTC 60.181 47.826 0.00 0.00 0.00 3.20
3102 3459 3.049344 ACCAGACTTGTTTTCCCTCTCT 58.951 45.455 0.00 0.00 0.00 3.10
3103 3460 4.232091 ACCAGACTTGTTTTCCCTCTCTA 58.768 43.478 0.00 0.00 0.00 2.43
3106 3534 6.500751 ACCAGACTTGTTTTCCCTCTCTATTA 59.499 38.462 0.00 0.00 0.00 0.98
3163 3591 4.575236 AGGAAACTTTGAAACTCGAGGTTC 59.425 41.667 31.84 31.84 37.44 3.62
3171 3599 7.661847 ACTTTGAAACTCGAGGTTCATTTCTAT 59.338 33.333 38.64 21.64 37.12 1.98
3179 3607 5.869344 TCGAGGTTCATTTCTATGTGTCTTG 59.131 40.000 0.00 0.00 33.34 3.02
3180 3608 5.446473 CGAGGTTCATTTCTATGTGTCTTGC 60.446 44.000 0.00 0.00 33.34 4.01
3181 3609 5.564550 AGGTTCATTTCTATGTGTCTTGCT 58.435 37.500 0.00 0.00 33.34 3.91
3182 3610 6.006449 AGGTTCATTTCTATGTGTCTTGCTT 58.994 36.000 0.00 0.00 33.34 3.91
3183 3611 6.072286 AGGTTCATTTCTATGTGTCTTGCTTG 60.072 38.462 0.00 0.00 33.34 4.01
3184 3612 6.294176 GGTTCATTTCTATGTGTCTTGCTTGT 60.294 38.462 0.00 0.00 33.34 3.16
3185 3613 7.094805 GGTTCATTTCTATGTGTCTTGCTTGTA 60.095 37.037 0.00 0.00 33.34 2.41
3186 3614 7.601073 TCATTTCTATGTGTCTTGCTTGTAG 57.399 36.000 0.00 0.00 33.34 2.74
3187 3615 7.386059 TCATTTCTATGTGTCTTGCTTGTAGA 58.614 34.615 0.00 0.00 33.34 2.59
3188 3616 8.043113 TCATTTCTATGTGTCTTGCTTGTAGAT 58.957 33.333 0.00 0.00 33.34 1.98
3189 3617 8.671921 CATTTCTATGTGTCTTGCTTGTAGATT 58.328 33.333 0.00 0.00 0.00 2.40
3190 3618 9.890629 ATTTCTATGTGTCTTGCTTGTAGATTA 57.109 29.630 0.00 0.00 0.00 1.75
3191 3619 8.703604 TTCTATGTGTCTTGCTTGTAGATTAC 57.296 34.615 0.00 0.00 0.00 1.89
3192 3620 7.836842 TCTATGTGTCTTGCTTGTAGATTACA 58.163 34.615 0.00 0.00 36.79 2.41
3193 3621 6.974932 ATGTGTCTTGCTTGTAGATTACAG 57.025 37.500 0.00 0.00 40.24 2.74
3194 3622 5.853936 TGTGTCTTGCTTGTAGATTACAGT 58.146 37.500 0.00 0.00 40.24 3.55
3195 3623 6.988522 TGTGTCTTGCTTGTAGATTACAGTA 58.011 36.000 0.00 0.00 40.24 2.74
3196 3624 7.611770 TGTGTCTTGCTTGTAGATTACAGTAT 58.388 34.615 0.00 0.00 40.24 2.12
3197 3625 7.759886 TGTGTCTTGCTTGTAGATTACAGTATC 59.240 37.037 0.00 0.00 40.24 2.24
3198 3626 7.976734 GTGTCTTGCTTGTAGATTACAGTATCT 59.023 37.037 0.00 0.00 40.24 1.98
3199 3627 8.531982 TGTCTTGCTTGTAGATTACAGTATCTT 58.468 33.333 0.00 0.00 40.24 2.40
3236 3717 2.366972 ATAAGGGGCTGGGAGCGT 60.367 61.111 0.00 0.00 43.62 5.07
3269 3751 2.287915 GTGCTCTTTCTCAAAAGCGTGA 59.712 45.455 0.00 0.00 41.44 4.35
3329 3814 2.438021 TGAGTTGTGAAGCTTACCTGGT 59.562 45.455 4.05 4.05 0.00 4.00
3356 3841 2.431771 TTGACGATGGACGCCGTG 60.432 61.111 0.00 0.00 46.94 4.94
3362 3847 1.081556 CGATGGACGCCGTGAATTCA 61.082 55.000 3.38 3.38 34.51 2.57
3367 3852 2.093921 TGGACGCCGTGAATTCATTCTA 60.094 45.455 12.12 0.00 37.67 2.10
3370 3855 4.051922 GACGCCGTGAATTCATTCTATCT 58.948 43.478 12.12 0.00 37.67 1.98
3372 3857 4.202161 ACGCCGTGAATTCATTCTATCTCT 60.202 41.667 12.12 0.00 37.67 3.10
3373 3858 4.747108 CGCCGTGAATTCATTCTATCTCTT 59.253 41.667 12.12 0.00 37.67 2.85
3375 3860 5.755375 GCCGTGAATTCATTCTATCTCTTCA 59.245 40.000 12.12 0.00 37.67 3.02
3376 3861 6.073873 GCCGTGAATTCATTCTATCTCTTCAG 60.074 42.308 12.12 0.00 37.67 3.02
3378 3863 6.073873 CGTGAATTCATTCTATCTCTTCAGCC 60.074 42.308 12.12 0.00 37.67 4.85
3379 3864 6.204495 GTGAATTCATTCTATCTCTTCAGCCC 59.796 42.308 12.12 0.00 37.67 5.19
3380 3865 5.901413 ATTCATTCTATCTCTTCAGCCCA 57.099 39.130 0.00 0.00 0.00 5.36
3381 3866 4.952071 TCATTCTATCTCTTCAGCCCAG 57.048 45.455 0.00 0.00 0.00 4.45
3382 3867 3.645212 TCATTCTATCTCTTCAGCCCAGG 59.355 47.826 0.00 0.00 0.00 4.45
3383 3868 2.094100 TCTATCTCTTCAGCCCAGGG 57.906 55.000 0.00 0.00 0.00 4.45
3398 3883 1.006832 CAGGGCCTCGATTGTAAACG 58.993 55.000 0.95 0.00 0.00 3.60
3401 3886 1.347221 GCCTCGATTGTAAACGCCG 59.653 57.895 0.00 0.00 0.00 6.46
3425 3910 2.016318 TCCAGCCTGCAATTATCAACG 58.984 47.619 0.00 0.00 0.00 4.10
3426 3911 1.534595 CCAGCCTGCAATTATCAACGC 60.535 52.381 0.00 0.00 0.00 4.84
3438 6267 3.283684 CAACGCGGGTGAAGGCAA 61.284 61.111 12.47 0.00 0.00 4.52
3599 6442 6.599244 TCTGAATATTTGGTTGTAGCTTCAGG 59.401 38.462 0.00 0.00 39.05 3.86
3602 6445 0.476338 TTGGTTGTAGCTTCAGGCCA 59.524 50.000 5.01 12.41 43.05 5.36
3616 6459 3.744559 GCCAGTTTCAGGCGTCAA 58.255 55.556 0.00 0.00 43.15 3.18
3619 6462 0.868406 CCAGTTTCAGGCGTCAAGTC 59.132 55.000 0.00 0.00 0.00 3.01
3631 6474 0.873054 GTCAAGTCGACTCCACTCGA 59.127 55.000 20.33 6.14 41.81 4.04
3635 6478 3.872027 TCGACTCCACTCGACTCG 58.128 61.111 0.00 0.00 37.76 4.18
3638 6481 1.674980 GACTCCACTCGACTCGGGT 60.675 63.158 0.00 0.00 43.31 5.28
3650 6493 1.188219 ACTCGGGTGCAGACAGACAT 61.188 55.000 0.00 0.00 0.00 3.06
3655 6498 1.808945 GGGTGCAGACAGACATTCTTG 59.191 52.381 0.00 0.00 0.00 3.02
3665 6508 1.065854 AGACATTCTTGCTCCTTCCGG 60.066 52.381 0.00 0.00 0.00 5.14
3670 6513 3.551496 CTTGCTCCTTCCGGCCACA 62.551 63.158 2.24 0.00 0.00 4.17
3674 6517 2.528127 TCCTTCCGGCCACAGGAA 60.528 61.111 11.40 10.64 44.72 3.36
3675 6518 2.359975 CCTTCCGGCCACAGGAAC 60.360 66.667 2.24 0.00 42.33 3.62
3679 6522 4.760047 CCGGCCACAGGAACGGAG 62.760 72.222 2.24 0.00 43.83 4.63
3680 6523 3.691342 CGGCCACAGGAACGGAGA 61.691 66.667 2.24 0.00 0.00 3.71
3683 6526 1.596934 GCCACAGGAACGGAGATGA 59.403 57.895 0.00 0.00 0.00 2.92
3745 6589 7.042119 GCTGCTATGTATCCTCTCTTTCTTTTC 60.042 40.741 0.00 0.00 0.00 2.29
3804 6768 3.600388 CGAATCTACTTCACCAAAGGCT 58.400 45.455 0.00 0.00 39.47 4.58
3805 6769 4.003648 CGAATCTACTTCACCAAAGGCTT 58.996 43.478 0.00 0.00 39.47 4.35
3806 6770 4.142816 CGAATCTACTTCACCAAAGGCTTG 60.143 45.833 0.00 0.00 39.47 4.01
3900 6915 1.901085 GTCCTGCTCTGGACGGAAT 59.099 57.895 9.64 0.00 45.69 3.01
3905 6920 1.394917 CTGCTCTGGACGGAATTTTCG 59.605 52.381 0.00 0.00 0.00 3.46
3950 6965 1.549203 ACAGATGGGTGGATTGCAAC 58.451 50.000 0.00 0.00 0.00 4.17
3959 6974 0.323302 TGGATTGCAACTGCCTCGTA 59.677 50.000 0.00 0.00 41.18 3.43
3994 7009 3.371102 TTCACTTTCGTCAGTCAGAGG 57.629 47.619 0.00 0.00 0.00 3.69
3998 7013 2.959707 ACTTTCGTCAGTCAGAGGAGTT 59.040 45.455 0.00 0.00 41.68 3.01
4006 7021 0.610687 GTCAGAGGAGTTGACAGGGG 59.389 60.000 0.82 0.00 43.41 4.79
4061 7076 3.153919 GTTTCAGGTATCAGGTTGGCAA 58.846 45.455 0.00 0.00 0.00 4.52
4104 7119 2.743928 CCTCGACAGCTGGGTTGC 60.744 66.667 19.93 0.75 0.00 4.17
4110 7125 0.251165 GACAGCTGGGTTGCCCTTTA 60.251 55.000 19.93 0.00 45.70 1.85
4130 7145 1.164411 TAGCCTTTGGACATTGTGCG 58.836 50.000 3.76 0.00 0.00 5.34
4140 7155 3.100817 GGACATTGTGCGATCAATTTCG 58.899 45.455 0.00 0.00 41.99 3.46
4147 7162 0.581529 GCGATCAATTTCGGATGCGA 59.418 50.000 4.75 4.75 39.49 5.10
4155 7170 4.213270 TCAATTTCGGATGCGATAATGGTC 59.787 41.667 11.02 0.00 0.00 4.02
4160 7175 3.191791 TCGGATGCGATAATGGTCGATTA 59.808 43.478 4.75 0.00 44.06 1.75
4162 7177 4.207224 CGGATGCGATAATGGTCGATTATC 59.793 45.833 14.47 14.47 45.30 1.75
4172 7187 1.541233 GGTCGATTATCAGGTGCTGGG 60.541 57.143 0.00 0.00 31.51 4.45
4190 7205 4.993705 TGGGTGTACCAGATTTCTTCTT 57.006 40.909 3.11 0.00 46.80 2.52
4192 7207 5.070001 TGGGTGTACCAGATTTCTTCTTTG 58.930 41.667 3.11 0.00 46.80 2.77
4193 7208 4.082733 GGGTGTACCAGATTTCTTCTTTGC 60.083 45.833 3.11 0.00 39.85 3.68
4194 7209 4.378459 GGTGTACCAGATTTCTTCTTTGCG 60.378 45.833 0.00 0.00 35.64 4.85
4196 7211 4.451096 TGTACCAGATTTCTTCTTTGCGAC 59.549 41.667 0.00 0.00 29.93 5.19
4198 7213 2.813754 CCAGATTTCTTCTTTGCGACCA 59.186 45.455 0.00 0.00 29.93 4.02
4199 7214 3.441572 CCAGATTTCTTCTTTGCGACCAT 59.558 43.478 0.00 0.00 29.93 3.55
4200 7215 4.635765 CCAGATTTCTTCTTTGCGACCATA 59.364 41.667 0.00 0.00 29.93 2.74
4201 7216 5.447818 CCAGATTTCTTCTTTGCGACCATAC 60.448 44.000 0.00 0.00 29.93 2.39
4202 7217 5.352569 CAGATTTCTTCTTTGCGACCATACT 59.647 40.000 0.00 0.00 29.93 2.12
4203 7218 5.352569 AGATTTCTTCTTTGCGACCATACTG 59.647 40.000 0.00 0.00 0.00 2.74
4206 7221 4.744570 TCTTCTTTGCGACCATACTGTAG 58.255 43.478 0.00 0.00 0.00 2.74
4207 7222 2.888594 TCTTTGCGACCATACTGTAGC 58.111 47.619 0.00 0.00 37.38 3.58
4208 7223 2.232696 TCTTTGCGACCATACTGTAGCA 59.767 45.455 0.00 0.00 43.64 3.49
4210 7225 2.753055 TGCGACCATACTGTAGCAAA 57.247 45.000 0.00 0.00 42.63 3.68
4211 7226 2.343101 TGCGACCATACTGTAGCAAAC 58.657 47.619 0.00 0.00 42.63 2.93
4212 7227 2.028476 TGCGACCATACTGTAGCAAACT 60.028 45.455 0.00 0.00 42.63 2.66
4213 7228 3.193903 TGCGACCATACTGTAGCAAACTA 59.806 43.478 0.00 0.00 42.63 2.24
4223 7238 3.824414 GTAGCAAACTACGCCATGTTT 57.176 42.857 0.00 0.00 39.51 2.83
4224 7239 4.155310 GTAGCAAACTACGCCATGTTTT 57.845 40.909 0.00 0.00 39.51 2.43
4226 7241 2.360801 AGCAAACTACGCCATGTTTTGT 59.639 40.909 0.00 0.00 34.60 2.83
4227 7242 2.470999 GCAAACTACGCCATGTTTTGTG 59.529 45.455 0.00 0.00 34.60 3.33
4228 7243 3.701241 CAAACTACGCCATGTTTTGTGT 58.299 40.909 0.00 0.00 34.60 3.72
4229 7244 4.109050 CAAACTACGCCATGTTTTGTGTT 58.891 39.130 0.00 0.00 34.60 3.32
4232 7247 1.933247 ACGCCATGTTTTGTGTTTGG 58.067 45.000 0.00 0.00 0.00 3.28
4235 7250 2.539274 CGCCATGTTTTGTGTTTGGAAG 59.461 45.455 0.00 0.00 0.00 3.46
4236 7251 2.287644 GCCATGTTTTGTGTTTGGAAGC 59.712 45.455 0.00 0.00 0.00 3.86
4237 7252 3.529533 CCATGTTTTGTGTTTGGAAGCA 58.470 40.909 0.00 0.00 0.00 3.91
4238 7253 3.556775 CCATGTTTTGTGTTTGGAAGCAG 59.443 43.478 0.00 0.00 0.00 4.24
4239 7254 2.615869 TGTTTTGTGTTTGGAAGCAGC 58.384 42.857 0.00 0.00 0.00 5.25
4241 7256 1.189752 TTTGTGTTTGGAAGCAGCCA 58.810 45.000 0.00 0.00 35.78 4.75
4242 7257 1.189752 TTGTGTTTGGAAGCAGCCAA 58.810 45.000 6.23 6.23 45.77 4.52
4243 7258 1.412079 TGTGTTTGGAAGCAGCCAAT 58.588 45.000 10.59 0.00 46.59 3.16
4245 7260 2.170187 TGTGTTTGGAAGCAGCCAATTT 59.830 40.909 10.59 0.00 46.59 1.82
4246 7261 3.205338 GTGTTTGGAAGCAGCCAATTTT 58.795 40.909 10.59 0.00 46.59 1.82
4247 7262 3.627123 GTGTTTGGAAGCAGCCAATTTTT 59.373 39.130 10.59 0.00 46.59 1.94
4248 7263 3.626670 TGTTTGGAAGCAGCCAATTTTTG 59.373 39.130 10.59 0.00 46.59 2.44
4250 7265 2.836262 TGGAAGCAGCCAATTTTTGTG 58.164 42.857 0.00 0.00 34.31 3.33
4251 7266 2.170187 TGGAAGCAGCCAATTTTTGTGT 59.830 40.909 0.00 0.00 34.31 3.72
4253 7268 3.627123 GGAAGCAGCCAATTTTTGTGTTT 59.373 39.130 0.00 0.00 0.00 2.83
4254 7269 4.496175 GGAAGCAGCCAATTTTTGTGTTTG 60.496 41.667 0.00 0.00 0.00 2.93
4255 7270 2.944349 AGCAGCCAATTTTTGTGTTTGG 59.056 40.909 0.00 0.00 42.28 3.28
4256 7271 2.941720 GCAGCCAATTTTTGTGTTTGGA 59.058 40.909 5.15 0.00 42.02 3.53
4257 7272 3.242706 GCAGCCAATTTTTGTGTTTGGAC 60.243 43.478 5.15 0.00 42.02 4.02
4260 7275 5.066246 CAGCCAATTTTTGTGTTTGGACATT 59.934 36.000 5.15 0.00 42.02 2.71
4261 7276 5.066246 AGCCAATTTTTGTGTTTGGACATTG 59.934 36.000 5.15 0.00 42.02 2.82
4265 7280 7.361542 CCAATTTTTGTGTTTGGACATTGACAA 60.362 33.333 0.00 0.00 42.02 3.18
4266 7281 6.473397 TTTTTGTGTTTGGACATTGACAAC 57.527 33.333 0.00 0.00 38.23 3.32
4267 7282 4.790765 TTGTGTTTGGACATTGACAACA 57.209 36.364 0.00 0.00 38.23 3.33
4268 7283 4.790765 TGTGTTTGGACATTGACAACAA 57.209 36.364 0.00 0.00 38.23 2.83
4269 7284 5.336150 TGTGTTTGGACATTGACAACAAT 57.664 34.783 0.00 0.00 46.10 2.71
4285 7300 5.845103 ACAACAATGTCATGAATTCAGCAA 58.155 33.333 14.54 0.04 33.41 3.91
4287 7302 6.762187 ACAACAATGTCATGAATTCAGCAAAA 59.238 30.769 14.54 0.00 33.41 2.44
4288 7303 7.042321 ACAACAATGTCATGAATTCAGCAAAAG 60.042 33.333 14.54 9.03 33.41 2.27
4289 7304 5.929992 ACAATGTCATGAATTCAGCAAAAGG 59.070 36.000 14.54 4.34 0.00 3.11
4290 7305 5.988310 ATGTCATGAATTCAGCAAAAGGA 57.012 34.783 14.54 0.40 0.00 3.36
4293 7308 5.244402 TGTCATGAATTCAGCAAAAGGACAT 59.756 36.000 14.54 0.00 0.00 3.06
4295 7310 6.090358 GTCATGAATTCAGCAAAAGGACATTG 59.910 38.462 14.54 2.64 0.00 2.82
4296 7311 5.787953 TGAATTCAGCAAAAGGACATTGA 57.212 34.783 3.38 0.00 0.00 2.57
4297 7312 6.159299 TGAATTCAGCAAAAGGACATTGAA 57.841 33.333 3.38 0.00 0.00 2.69
4298 7313 6.580788 TGAATTCAGCAAAAGGACATTGAAA 58.419 32.000 3.38 0.00 0.00 2.69
4299 7314 6.479660 TGAATTCAGCAAAAGGACATTGAAAC 59.520 34.615 3.38 0.00 0.00 2.78
4300 7315 5.596836 TTCAGCAAAAGGACATTGAAACT 57.403 34.783 0.00 0.00 0.00 2.66
4301 7316 4.935702 TCAGCAAAAGGACATTGAAACTG 58.064 39.130 0.00 0.00 0.00 3.16
4302 7317 4.402155 TCAGCAAAAGGACATTGAAACTGT 59.598 37.500 0.00 0.00 0.00 3.55
4303 7318 4.741676 CAGCAAAAGGACATTGAAACTGTC 59.258 41.667 0.00 0.00 41.83 3.51
4304 7319 4.646492 AGCAAAAGGACATTGAAACTGTCT 59.354 37.500 3.73 0.00 42.14 3.41
4305 7320 4.741676 GCAAAAGGACATTGAAACTGTCTG 59.258 41.667 3.73 0.00 42.14 3.51
4306 7321 5.679638 GCAAAAGGACATTGAAACTGTCTGT 60.680 40.000 3.73 0.00 42.14 3.41
4307 7322 6.459573 GCAAAAGGACATTGAAACTGTCTGTA 60.460 38.462 3.73 0.00 42.14 2.74
4310 7325 4.348168 AGGACATTGAAACTGTCTGTACCT 59.652 41.667 3.73 0.00 42.14 3.08
4311 7326 4.452455 GGACATTGAAACTGTCTGTACCTG 59.548 45.833 3.73 0.00 42.14 4.00
4312 7327 5.290493 ACATTGAAACTGTCTGTACCTGA 57.710 39.130 0.00 0.00 0.00 3.86
4313 7328 5.869579 ACATTGAAACTGTCTGTACCTGAT 58.130 37.500 0.00 0.00 0.00 2.90
4314 7329 5.934625 ACATTGAAACTGTCTGTACCTGATC 59.065 40.000 0.00 0.00 0.00 2.92
4315 7330 5.545063 TTGAAACTGTCTGTACCTGATCA 57.455 39.130 0.00 0.00 0.00 2.92
4316 7331 5.545063 TGAAACTGTCTGTACCTGATCAA 57.455 39.130 0.00 0.00 0.00 2.57
4317 7332 5.541845 TGAAACTGTCTGTACCTGATCAAG 58.458 41.667 0.00 0.00 0.00 3.02
4318 7333 5.304357 TGAAACTGTCTGTACCTGATCAAGA 59.696 40.000 0.00 0.00 0.00 3.02
4320 7335 5.398603 ACTGTCTGTACCTGATCAAGAAG 57.601 43.478 0.00 1.35 0.00 2.85
4321 7336 4.221703 ACTGTCTGTACCTGATCAAGAAGG 59.778 45.833 0.00 0.00 39.65 3.46
4325 7340 5.026121 TCTGTACCTGATCAAGAAGGTCAT 58.974 41.667 7.59 0.00 43.52 3.06
4326 7341 6.096987 GTCTGTACCTGATCAAGAAGGTCATA 59.903 42.308 7.59 0.00 43.52 2.15
4327 7342 6.096987 TCTGTACCTGATCAAGAAGGTCATAC 59.903 42.308 7.59 2.74 43.52 2.39
4328 7343 5.719563 TGTACCTGATCAAGAAGGTCATACA 59.280 40.000 7.59 5.06 43.52 2.29
4329 7344 5.091261 ACCTGATCAAGAAGGTCATACAC 57.909 43.478 0.00 0.00 43.52 2.90
4330 7345 4.080863 ACCTGATCAAGAAGGTCATACACC 60.081 45.833 0.00 0.00 43.52 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.952967 ACTGGGTACTCGGTAGAATCTTC 59.047 47.826 5.07 0.00 0.00 2.87
1 2 3.700038 CACTGGGTACTCGGTAGAATCTT 59.300 47.826 6.96 0.00 0.00 2.40
2 3 3.053842 TCACTGGGTACTCGGTAGAATCT 60.054 47.826 6.96 0.00 0.00 2.40
3 4 3.285484 TCACTGGGTACTCGGTAGAATC 58.715 50.000 6.96 0.00 0.00 2.52
4 5 3.377253 TCACTGGGTACTCGGTAGAAT 57.623 47.619 6.96 0.00 0.00 2.40
5 6 2.885135 TCACTGGGTACTCGGTAGAA 57.115 50.000 6.96 0.00 0.00 2.10
6 7 4.080129 ACTTATCACTGGGTACTCGGTAGA 60.080 45.833 6.96 8.00 0.00 2.59
7 8 4.205587 ACTTATCACTGGGTACTCGGTAG 58.794 47.826 6.96 3.69 0.00 3.18
8 9 4.240881 ACTTATCACTGGGTACTCGGTA 57.759 45.455 6.96 0.00 0.00 4.02
9 10 3.097342 ACTTATCACTGGGTACTCGGT 57.903 47.619 0.00 0.00 0.00 4.69
10 11 4.205587 ACTACTTATCACTGGGTACTCGG 58.794 47.826 0.00 0.00 0.00 4.63
11 12 4.025061 CGACTACTTATCACTGGGTACTCG 60.025 50.000 0.00 0.00 0.00 4.18
12 13 5.121811 TCGACTACTTATCACTGGGTACTC 58.878 45.833 0.00 0.00 0.00 2.59
16 17 5.476614 GTTTTCGACTACTTATCACTGGGT 58.523 41.667 0.00 0.00 0.00 4.51
35 36 2.600320 CGTTGGCAATCGTGTACGTTTT 60.600 45.455 1.92 0.00 40.80 2.43
36 37 1.070443 CGTTGGCAATCGTGTACGTTT 60.070 47.619 1.92 0.00 40.80 3.60
39 40 1.225637 GCGTTGGCAATCGTGTACG 60.226 57.895 18.44 11.40 39.62 3.67
51 52 1.354337 CTCGAGTGGACATGCGTTGG 61.354 60.000 3.62 0.00 0.00 3.77
59 60 1.111116 AAACCGGACTCGAGTGGACA 61.111 55.000 25.58 0.00 39.00 4.02
74 75 4.336153 TCCAAGTTTTGTTCTCGGTAAACC 59.664 41.667 0.00 0.00 32.35 3.27
75 76 5.488645 TCCAAGTTTTGTTCTCGGTAAAC 57.511 39.130 0.00 0.00 0.00 2.01
82 83 6.399564 CGTTGTGTTTTCCAAGTTTTGTTCTC 60.400 38.462 0.00 0.00 0.00 2.87
97 98 3.615099 CAACTCGGCGTTGTGTTTT 57.385 47.368 6.85 0.00 46.23 2.43
117 118 3.562973 AGCATGCATCACTACTGTATTGC 59.437 43.478 21.98 0.00 35.27 3.56
118 119 4.812626 TGAGCATGCATCACTACTGTATTG 59.187 41.667 21.98 0.00 0.00 1.90
121 122 4.343239 AGATGAGCATGCATCACTACTGTA 59.657 41.667 21.98 0.00 45.52 2.74
122 123 3.134262 AGATGAGCATGCATCACTACTGT 59.866 43.478 21.98 4.62 45.52 3.55
123 124 3.729966 AGATGAGCATGCATCACTACTG 58.270 45.455 21.98 0.00 45.52 2.74
167 169 3.752747 GGCAAAACTGAATGGGGAAAATG 59.247 43.478 0.00 0.00 0.00 2.32
169 171 2.774234 TGGCAAAACTGAATGGGGAAAA 59.226 40.909 0.00 0.00 0.00 2.29
173 175 1.676615 GCATGGCAAAACTGAATGGGG 60.677 52.381 0.00 0.00 0.00 4.96
237 264 6.457355 ACAATGATAGATGAAGCTAGCAGAG 58.543 40.000 18.83 0.00 39.77 3.35
238 265 6.416631 ACAATGATAGATGAAGCTAGCAGA 57.583 37.500 18.83 0.00 39.77 4.26
239 266 8.494347 GTTTACAATGATAGATGAAGCTAGCAG 58.506 37.037 18.83 0.00 39.77 4.24
240 267 7.442364 GGTTTACAATGATAGATGAAGCTAGCA 59.558 37.037 18.83 0.00 40.58 3.49
241 268 7.659390 AGGTTTACAATGATAGATGAAGCTAGC 59.341 37.037 6.62 6.62 0.00 3.42
242 269 9.553064 AAGGTTTACAATGATAGATGAAGCTAG 57.447 33.333 0.00 0.00 0.00 3.42
243 270 9.330063 CAAGGTTTACAATGATAGATGAAGCTA 57.670 33.333 0.00 0.00 0.00 3.32
244 271 7.831193 ACAAGGTTTACAATGATAGATGAAGCT 59.169 33.333 0.00 0.00 0.00 3.74
245 272 7.989826 ACAAGGTTTACAATGATAGATGAAGC 58.010 34.615 0.00 0.00 0.00 3.86
246 273 9.388506 AGACAAGGTTTACAATGATAGATGAAG 57.611 33.333 0.00 0.00 0.00 3.02
264 291 6.476378 ACATGACAAGCTAATTAGACAAGGT 58.524 36.000 16.85 6.11 0.00 3.50
365 393 2.921797 GCCGCTTAACCCCGCAAAA 61.922 57.895 0.00 0.00 0.00 2.44
465 493 2.158623 AGTGTTGATTGGCCAGAGTTGA 60.159 45.455 5.11 0.00 0.00 3.18
473 501 0.244721 GCCTTGAGTGTTGATTGGCC 59.755 55.000 0.00 0.00 33.45 5.36
575 609 0.462759 GAGCAAGGGGAAGACCATCG 60.463 60.000 0.00 0.00 42.91 3.84
663 697 0.476771 AAATGTGAACCCAGGTCGGT 59.523 50.000 0.00 0.00 37.93 4.69
675 709 2.897436 CTCATCGCTCTCCAAATGTGA 58.103 47.619 0.00 0.00 0.00 3.58
743 777 9.624373 CCTGGCTATCAAATATAGCAAGAATAT 57.376 33.333 18.76 0.00 46.59 1.28
744 778 8.605947 ACCTGGCTATCAAATATAGCAAGAATA 58.394 33.333 18.76 0.51 46.59 1.75
745 779 7.465116 ACCTGGCTATCAAATATAGCAAGAAT 58.535 34.615 18.76 7.36 46.59 2.40
746 780 6.841601 ACCTGGCTATCAAATATAGCAAGAA 58.158 36.000 18.76 3.13 46.59 2.52
747 781 6.439636 ACCTGGCTATCAAATATAGCAAGA 57.560 37.500 18.76 3.70 46.59 3.02
748 782 6.569226 GCAACCTGGCTATCAAATATAGCAAG 60.569 42.308 16.46 14.49 46.47 4.01
749 783 5.241506 GCAACCTGGCTATCAAATATAGCAA 59.758 40.000 16.46 6.63 46.47 3.91
750 784 4.761739 GCAACCTGGCTATCAAATATAGCA 59.238 41.667 16.46 4.80 46.47 3.49
751 785 4.156739 GGCAACCTGGCTATCAAATATAGC 59.843 45.833 8.22 8.22 44.56 2.97
752 786 5.316167 TGGCAACCTGGCTATCAAATATAG 58.684 41.667 0.00 0.00 44.10 1.31
753 787 5.316167 CTGGCAACCTGGCTATCAAATATA 58.684 41.667 0.00 0.00 44.10 0.86
754 788 4.147321 CTGGCAACCTGGCTATCAAATAT 58.853 43.478 0.00 0.00 44.10 1.28
755 789 3.554934 CTGGCAACCTGGCTATCAAATA 58.445 45.455 0.00 0.00 44.10 1.40
756 790 2.381911 CTGGCAACCTGGCTATCAAAT 58.618 47.619 0.00 0.00 44.10 2.32
757 791 1.616725 CCTGGCAACCTGGCTATCAAA 60.617 52.381 0.00 0.00 44.10 2.69
964 1010 4.489810 CATGTCTTCACCTCTGTACTGTC 58.510 47.826 0.00 0.00 0.00 3.51
1332 1414 6.127786 ACTGAAGCTTCTTGATATTTCTTGGC 60.128 38.462 26.09 0.00 0.00 4.52
1427 1509 5.617252 ACTTCCCGAACAGATGAAGTAAAA 58.383 37.500 2.15 0.00 44.04 1.52
1479 1561 3.119291 CGCCTGTAGCTTACTCATTCTG 58.881 50.000 0.00 0.00 40.39 3.02
1511 1593 3.795877 ACTGTTTCCAATTTGCTGTTGG 58.204 40.909 8.46 8.46 45.94 3.77
1626 1711 3.126879 CTGGCATCGGCGCAAGAA 61.127 61.111 10.83 0.00 42.47 2.52
1687 1815 3.837213 AGTCATGAAATTGGTGCTTCG 57.163 42.857 0.00 0.00 0.00 3.79
1704 1832 2.992543 GAGTGAGAGTGCATGTGAAGTC 59.007 50.000 0.00 0.00 0.00 3.01
1770 1898 4.721776 AGATAGTAGGATTTGCCAGTTCCA 59.278 41.667 0.00 0.00 40.02 3.53
1772 1900 7.020914 CAAAGATAGTAGGATTTGCCAGTTC 57.979 40.000 0.00 0.00 40.02 3.01
1856 2002 3.679389 AGGCACAACTTATTGAGACCAG 58.321 45.455 0.00 0.00 35.14 4.00
1923 2078 1.878070 CTTCAGGCTGCGCATTTCA 59.122 52.632 12.24 0.00 0.00 2.69
1966 2121 2.557924 GTCCAATGATGTGCTTGTCCAA 59.442 45.455 0.00 0.00 0.00 3.53
1983 2138 2.655090 TTCTGAATGCACCTTGTCCA 57.345 45.000 0.00 0.00 0.00 4.02
2011 2167 1.410004 TCCACCGTGATCCATAGGTC 58.590 55.000 0.00 0.00 34.25 3.85
2019 2175 2.093973 AGTCATCACTTCCACCGTGATC 60.094 50.000 0.00 0.00 46.15 2.92
2042 2201 1.874019 CCGTCTTCGATGTCCAGCG 60.874 63.158 0.00 0.00 42.20 5.18
2088 2247 7.739825 AGCCATCTAGATTTTTACATAGCAGA 58.260 34.615 1.33 0.00 0.00 4.26
2334 2508 4.331717 GTGTCATTACCGGGATGTAAACTG 59.668 45.833 6.32 0.00 34.59 3.16
2339 2513 4.829872 AAAGTGTCATTACCGGGATGTA 57.170 40.909 6.32 1.43 0.00 2.29
2366 2543 1.856265 GCCTGTACTGCCTGCACAAC 61.856 60.000 0.00 0.00 0.00 3.32
2492 2702 2.052104 CGGGGAAGCCACCAAATCC 61.052 63.158 0.00 0.00 0.00 3.01
2515 2725 4.512198 TGGTGACACAACATAAAAGTACGG 59.488 41.667 8.08 0.00 33.40 4.02
2643 2864 5.296780 ACATGTCCAACAACAAACAGAGTAG 59.703 40.000 0.00 0.00 31.81 2.57
2684 2906 4.922206 AGATGCCAATTAAGTTGACTGGA 58.078 39.130 0.00 0.00 40.37 3.86
2724 2953 6.810911 ACAAGTATAGCACATTCTAGTCCTG 58.189 40.000 0.00 0.00 0.00 3.86
2820 3059 6.176014 AGAGGTTGATTACTATTAGTGGCC 57.824 41.667 6.60 0.00 0.00 5.36
2821 3060 7.769044 TGAAAGAGGTTGATTACTATTAGTGGC 59.231 37.037 6.60 0.00 0.00 5.01
2822 3061 9.667107 TTGAAAGAGGTTGATTACTATTAGTGG 57.333 33.333 6.60 0.00 0.00 4.00
2855 3103 6.707290 TGCAGTTGTACTGGTCAATTACTAT 58.293 36.000 8.73 0.00 46.01 2.12
2856 3104 6.104146 TGCAGTTGTACTGGTCAATTACTA 57.896 37.500 8.73 0.00 46.01 1.82
2858 3106 5.238650 ACTTGCAGTTGTACTGGTCAATTAC 59.761 40.000 8.73 0.00 46.01 1.89
2859 3107 5.373222 ACTTGCAGTTGTACTGGTCAATTA 58.627 37.500 8.73 0.00 46.01 1.40
2863 3111 3.275617 AACTTGCAGTTGTACTGGTCA 57.724 42.857 8.73 0.00 46.01 4.02
2899 3147 3.017442 GGCTCCCAAGGTTACTTTCATC 58.983 50.000 0.00 0.00 33.81 2.92
2901 3149 2.062636 AGGCTCCCAAGGTTACTTTCA 58.937 47.619 0.00 0.00 33.81 2.69
2906 3154 1.378646 GGCAGGCTCCCAAGGTTAC 60.379 63.158 0.00 0.00 0.00 2.50
2934 3238 1.299165 GAGCGATCGCACATACGGT 60.299 57.895 38.60 18.10 44.88 4.83
2937 3241 2.649257 GCCGAGCGATCGCACATAC 61.649 63.158 38.60 21.33 44.88 2.39
2995 3349 2.572104 AGCCGAACCTGTAGGAATTTCT 59.428 45.455 4.64 0.00 38.94 2.52
3027 3381 7.469181 GCATAGAGGCAATTGCTACTGTTTTAT 60.469 37.037 28.42 14.38 41.70 1.40
3046 3400 0.324285 GCCTCCAGGGATGCATAGAG 59.676 60.000 10.25 1.28 36.13 2.43
3071 3428 5.633830 AAACAAGTCTGGTCAAGCATATG 57.366 39.130 0.00 0.00 0.00 1.78
3074 3431 3.319122 GGAAAACAAGTCTGGTCAAGCAT 59.681 43.478 0.00 0.00 0.00 3.79
3113 3541 6.262049 GGCAACATCCAAGGTTTATTTGTTTT 59.738 34.615 0.00 0.00 0.00 2.43
3117 3545 4.892433 TGGCAACATCCAAGGTTTATTTG 58.108 39.130 0.00 0.00 46.17 2.32
3156 3584 5.446473 GCAAGACACATAGAAATGAACCTCG 60.446 44.000 0.00 0.00 36.54 4.63
3157 3585 5.645497 AGCAAGACACATAGAAATGAACCTC 59.355 40.000 0.00 0.00 36.54 3.85
3163 3591 7.601073 TCTACAAGCAAGACACATAGAAATG 57.399 36.000 0.00 0.00 39.17 2.32
3171 3599 5.853936 ACTGTAATCTACAAGCAAGACACA 58.146 37.500 0.00 0.00 38.38 3.72
3182 3610 9.696572 ACCTCAGTTAAGATACTGTAATCTACA 57.303 33.333 0.00 0.00 44.62 2.74
3220 3648 2.228480 AAACGCTCCCAGCCCCTTA 61.228 57.895 0.00 0.00 38.18 2.69
3236 3717 2.057137 AAGAGCACAGAAGGCACAAA 57.943 45.000 0.00 0.00 0.00 2.83
3269 3751 4.292186 AGACCATCAGTGTGCACTTAAT 57.708 40.909 19.41 3.67 40.20 1.40
3329 3814 0.613260 CCATCGTCAAGGGGTCTTCA 59.387 55.000 0.00 0.00 0.00 3.02
3356 3841 6.294473 TGGGCTGAAGAGATAGAATGAATTC 58.706 40.000 0.00 0.00 37.06 2.17
3362 3847 2.978278 CCCTGGGCTGAAGAGATAGAAT 59.022 50.000 0.00 0.00 0.00 2.40
3367 3852 3.329093 GCCCTGGGCTGAAGAGAT 58.671 61.111 30.42 0.00 46.69 2.75
3378 3863 1.379527 GTTTACAATCGAGGCCCTGG 58.620 55.000 0.00 0.00 0.00 4.45
3379 3864 1.006832 CGTTTACAATCGAGGCCCTG 58.993 55.000 0.00 0.00 0.00 4.45
3380 3865 0.743345 GCGTTTACAATCGAGGCCCT 60.743 55.000 0.00 0.00 0.00 5.19
3381 3866 1.712018 GGCGTTTACAATCGAGGCCC 61.712 60.000 0.00 0.00 38.14 5.80
3382 3867 1.719709 GGCGTTTACAATCGAGGCC 59.280 57.895 0.00 0.00 37.20 5.19
3383 3868 1.347221 CGGCGTTTACAATCGAGGC 59.653 57.895 0.00 0.00 0.00 4.70
3384 3869 0.368907 CACGGCGTTTACAATCGAGG 59.631 55.000 11.19 0.00 0.00 4.63
3385 3870 0.247145 GCACGGCGTTTACAATCGAG 60.247 55.000 11.19 0.00 0.00 4.04
3386 3871 0.668096 AGCACGGCGTTTACAATCGA 60.668 50.000 11.19 0.00 0.00 3.59
3387 3872 0.247145 GAGCACGGCGTTTACAATCG 60.247 55.000 11.19 0.00 0.00 3.34
3388 3873 0.096454 GGAGCACGGCGTTTACAATC 59.904 55.000 11.19 1.98 0.00 2.67
3401 3886 1.336125 GATAATTGCAGGCTGGAGCAC 59.664 52.381 17.64 0.00 44.36 4.40
3425 3910 2.650778 CCTTTTGCCTTCACCCGC 59.349 61.111 0.00 0.00 0.00 6.13
3426 3911 2.146073 CTGCCTTTTGCCTTCACCCG 62.146 60.000 0.00 0.00 40.16 5.28
3438 6267 2.158475 TCCATCTTTGTCCACTGCCTTT 60.158 45.455 0.00 0.00 0.00 3.11
3599 6442 1.166531 ACTTGACGCCTGAAACTGGC 61.167 55.000 9.11 9.11 43.55 4.85
3602 6445 0.387929 TCGACTTGACGCCTGAAACT 59.612 50.000 0.00 0.00 0.00 2.66
3631 6474 1.188219 ATGTCTGTCTGCACCCGAGT 61.188 55.000 0.00 0.00 0.00 4.18
3632 6475 0.036952 AATGTCTGTCTGCACCCGAG 60.037 55.000 0.00 0.00 0.00 4.63
3633 6476 0.037326 GAATGTCTGTCTGCACCCGA 60.037 55.000 0.00 0.00 0.00 5.14
3634 6477 0.036952 AGAATGTCTGTCTGCACCCG 60.037 55.000 0.00 0.00 0.00 5.28
3635 6478 1.808945 CAAGAATGTCTGTCTGCACCC 59.191 52.381 0.00 0.00 0.00 4.61
3638 6481 2.420642 GAGCAAGAATGTCTGTCTGCA 58.579 47.619 3.90 0.00 0.00 4.41
3639 6482 1.736681 GGAGCAAGAATGTCTGTCTGC 59.263 52.381 0.00 0.00 0.00 4.26
3665 6508 0.036388 TTCATCTCCGTTCCTGTGGC 60.036 55.000 0.00 0.00 0.00 5.01
3670 6513 0.818296 CTCCGTTCATCTCCGTTCCT 59.182 55.000 0.00 0.00 0.00 3.36
3674 6517 0.103208 GCATCTCCGTTCATCTCCGT 59.897 55.000 0.00 0.00 0.00 4.69
3675 6518 0.387202 AGCATCTCCGTTCATCTCCG 59.613 55.000 0.00 0.00 0.00 4.63
3678 6521 0.179062 GGCAGCATCTCCGTTCATCT 60.179 55.000 0.00 0.00 0.00 2.90
3679 6522 1.493950 CGGCAGCATCTCCGTTCATC 61.494 60.000 0.00 0.00 40.72 2.92
3680 6523 1.522355 CGGCAGCATCTCCGTTCAT 60.522 57.895 0.00 0.00 40.72 2.57
3745 6589 8.035394 ACAGTCTAGTGTGTATTATCCTTGTTG 58.965 37.037 0.00 0.00 0.00 3.33
3804 6768 2.300956 TAAACCATTCTGGCTGGCAA 57.699 45.000 5.14 0.00 42.67 4.52
3805 6769 2.300956 TTAAACCATTCTGGCTGGCA 57.699 45.000 3.18 3.18 42.67 4.92
3806 6770 3.055891 ACATTTAAACCATTCTGGCTGGC 60.056 43.478 0.00 0.00 42.67 4.85
3921 6936 7.362662 CAATCCACCCATCTGTTTTTATATCG 58.637 38.462 0.00 0.00 0.00 2.92
3937 6952 1.598701 GAGGCAGTTGCAATCCACCC 61.599 60.000 0.59 0.00 44.36 4.61
3959 6974 1.072331 AGTGAAAACACCAGGCTCGAT 59.928 47.619 0.00 0.00 0.00 3.59
3994 7009 0.035739 TTAACCGCCCCTGTCAACTC 59.964 55.000 0.00 0.00 0.00 3.01
3998 7013 0.539986 GAGATTAACCGCCCCTGTCA 59.460 55.000 0.00 0.00 0.00 3.58
4006 7021 2.128992 GTCTCCAGCGAGATTAACCGC 61.129 57.143 9.77 9.77 46.75 5.68
4021 7036 1.915769 ACACCCCAGCTCTGTCTCC 60.916 63.158 0.00 0.00 0.00 3.71
4072 7087 1.208614 GAGGCAAACAGAAGCTGCG 59.791 57.895 0.00 0.00 36.93 5.18
4104 7119 4.956075 ACAATGTCCAAAGGCTATAAAGGG 59.044 41.667 0.00 0.00 0.00 3.95
4110 7125 1.745087 CGCACAATGTCCAAAGGCTAT 59.255 47.619 0.00 0.00 0.00 2.97
4140 7155 5.643339 GATAATCGACCATTATCGCATCC 57.357 43.478 2.40 0.00 42.20 3.51
4147 7162 5.240891 CAGCACCTGATAATCGACCATTAT 58.759 41.667 0.00 0.00 39.97 1.28
4155 7170 1.134401 ACACCCAGCACCTGATAATCG 60.134 52.381 0.00 0.00 32.44 3.34
4160 7175 0.840288 TGGTACACCCAGCACCTGAT 60.840 55.000 0.00 0.00 38.72 2.90
4162 7177 3.156714 TGGTACACCCAGCACCTG 58.843 61.111 0.00 0.00 38.72 4.00
4172 7187 4.451096 TCGCAAAGAAGAAATCTGGTACAC 59.549 41.667 0.00 0.00 38.79 2.90
4179 7194 5.352569 CAGTATGGTCGCAAAGAAGAAATCT 59.647 40.000 0.00 0.00 41.32 2.40
4180 7195 5.122396 ACAGTATGGTCGCAAAGAAGAAATC 59.878 40.000 0.00 0.00 43.62 2.17
4181 7196 5.003804 ACAGTATGGTCGCAAAGAAGAAAT 58.996 37.500 0.00 0.00 43.62 2.17
4183 7198 4.002906 ACAGTATGGTCGCAAAGAAGAA 57.997 40.909 0.00 0.00 43.62 2.52
4184 7199 3.678056 ACAGTATGGTCGCAAAGAAGA 57.322 42.857 0.00 0.00 43.62 2.87
4185 7200 3.307242 GCTACAGTATGGTCGCAAAGAAG 59.693 47.826 0.00 0.00 43.62 2.85
4186 7201 3.259064 GCTACAGTATGGTCGCAAAGAA 58.741 45.455 0.00 0.00 43.62 2.52
4188 7203 2.616960 TGCTACAGTATGGTCGCAAAG 58.383 47.619 0.00 0.00 43.62 2.77
4189 7204 2.753055 TGCTACAGTATGGTCGCAAA 57.247 45.000 0.00 0.00 43.62 3.68
4190 7205 2.739913 GTTTGCTACAGTATGGTCGCAA 59.260 45.455 1.76 1.76 43.62 4.85
4192 7207 2.618053 AGTTTGCTACAGTATGGTCGC 58.382 47.619 0.00 0.00 43.62 5.19
4193 7208 3.789756 CGTAGTTTGCTACAGTATGGTCG 59.210 47.826 5.75 0.00 45.92 4.79
4194 7209 3.550678 GCGTAGTTTGCTACAGTATGGTC 59.449 47.826 5.75 0.00 45.92 4.02
4196 7211 2.864343 GGCGTAGTTTGCTACAGTATGG 59.136 50.000 5.75 0.00 45.92 2.74
4198 7213 3.880047 TGGCGTAGTTTGCTACAGTAT 57.120 42.857 5.75 0.00 45.92 2.12
4199 7214 3.056393 ACATGGCGTAGTTTGCTACAGTA 60.056 43.478 0.00 0.00 45.92 2.74
4200 7215 2.289444 ACATGGCGTAGTTTGCTACAGT 60.289 45.455 0.00 0.00 45.92 3.55
4201 7216 2.346803 ACATGGCGTAGTTTGCTACAG 58.653 47.619 0.00 0.69 45.92 2.74
4202 7217 2.465860 ACATGGCGTAGTTTGCTACA 57.534 45.000 0.00 0.00 45.92 2.74
4203 7218 3.824414 AAACATGGCGTAGTTTGCTAC 57.176 42.857 0.00 0.00 43.06 3.58
4206 7221 2.470999 CACAAAACATGGCGTAGTTTGC 59.529 45.455 11.98 0.00 37.94 3.68
4207 7222 3.701241 ACACAAAACATGGCGTAGTTTG 58.299 40.909 10.95 10.95 37.94 2.93
4208 7223 4.379339 AACACAAAACATGGCGTAGTTT 57.621 36.364 0.00 0.00 39.46 2.66
4209 7224 4.109050 CAAACACAAAACATGGCGTAGTT 58.891 39.130 0.00 0.00 0.00 2.24
4210 7225 3.490078 CCAAACACAAAACATGGCGTAGT 60.490 43.478 0.00 0.00 0.00 2.73
4211 7226 3.049206 CCAAACACAAAACATGGCGTAG 58.951 45.455 0.00 0.00 0.00 3.51
4212 7227 2.688446 TCCAAACACAAAACATGGCGTA 59.312 40.909 0.00 0.00 0.00 4.42
4213 7228 1.478510 TCCAAACACAAAACATGGCGT 59.521 42.857 0.00 0.00 0.00 5.68
4215 7230 2.287644 GCTTCCAAACACAAAACATGGC 59.712 45.455 0.00 0.00 0.00 4.40
4216 7231 3.529533 TGCTTCCAAACACAAAACATGG 58.470 40.909 0.00 0.00 0.00 3.66
4218 7233 3.197265 GCTGCTTCCAAACACAAAACAT 58.803 40.909 0.00 0.00 0.00 2.71
4219 7234 2.615869 GCTGCTTCCAAACACAAAACA 58.384 42.857 0.00 0.00 0.00 2.83
4220 7235 1.933181 GGCTGCTTCCAAACACAAAAC 59.067 47.619 0.00 0.00 0.00 2.43
4222 7237 1.189752 TGGCTGCTTCCAAACACAAA 58.810 45.000 0.00 0.00 32.18 2.83
4223 7238 1.189752 TTGGCTGCTTCCAAACACAA 58.810 45.000 7.61 0.00 42.69 3.33
4224 7239 2.893441 TTGGCTGCTTCCAAACACA 58.107 47.368 7.61 0.00 42.69 3.72
4232 7247 4.496175 CCAAACACAAAAATTGGCTGCTTC 60.496 41.667 0.00 0.00 37.40 3.86
4235 7250 2.941720 TCCAAACACAAAAATTGGCTGC 59.058 40.909 0.00 0.00 42.65 5.25
4236 7251 3.937706 TGTCCAAACACAAAAATTGGCTG 59.062 39.130 0.00 0.00 42.65 4.85
4237 7252 4.213564 TGTCCAAACACAAAAATTGGCT 57.786 36.364 0.00 0.00 42.65 4.75
4238 7253 5.065731 TCAATGTCCAAACACAAAAATTGGC 59.934 36.000 0.00 0.00 42.65 4.52
4239 7254 6.093219 TGTCAATGTCCAAACACAAAAATTGG 59.907 34.615 0.00 0.00 43.97 3.16
4241 7256 7.173907 TGTTGTCAATGTCCAAACACAAAAATT 59.826 29.630 0.00 0.00 38.48 1.82
4242 7257 6.652481 TGTTGTCAATGTCCAAACACAAAAAT 59.348 30.769 0.00 0.00 38.48 1.82
4243 7258 5.991606 TGTTGTCAATGTCCAAACACAAAAA 59.008 32.000 0.00 0.00 38.48 1.94
4245 7260 5.139435 TGTTGTCAATGTCCAAACACAAA 57.861 34.783 0.00 0.00 38.48 2.83
4246 7261 4.790765 TGTTGTCAATGTCCAAACACAA 57.209 36.364 0.00 0.00 38.48 3.33
4247 7262 4.790765 TTGTTGTCAATGTCCAAACACA 57.209 36.364 0.00 0.00 38.48 3.72
4265 7280 5.929992 CCTTTTGCTGAATTCATGACATTGT 59.070 36.000 8.96 0.00 0.00 2.71
4266 7281 6.090358 GTCCTTTTGCTGAATTCATGACATTG 59.910 38.462 8.96 0.00 0.00 2.82
4267 7282 6.161381 GTCCTTTTGCTGAATTCATGACATT 58.839 36.000 8.96 0.00 0.00 2.71
4268 7283 5.244402 TGTCCTTTTGCTGAATTCATGACAT 59.756 36.000 8.96 0.00 0.00 3.06
4269 7284 4.583907 TGTCCTTTTGCTGAATTCATGACA 59.416 37.500 8.96 9.98 0.00 3.58
4271 7286 5.988310 ATGTCCTTTTGCTGAATTCATGA 57.012 34.783 8.96 0.00 0.00 3.07
4273 7288 6.349243 TCAATGTCCTTTTGCTGAATTCAT 57.651 33.333 8.96 0.00 0.00 2.57
4274 7289 5.787953 TCAATGTCCTTTTGCTGAATTCA 57.212 34.783 8.12 8.12 0.00 2.57
4275 7290 6.703165 AGTTTCAATGTCCTTTTGCTGAATTC 59.297 34.615 0.00 0.00 0.00 2.17
4277 7292 5.987347 CAGTTTCAATGTCCTTTTGCTGAAT 59.013 36.000 0.00 0.00 0.00 2.57
4278 7293 5.105392 ACAGTTTCAATGTCCTTTTGCTGAA 60.105 36.000 0.00 0.00 0.00 3.02
4279 7294 4.402155 ACAGTTTCAATGTCCTTTTGCTGA 59.598 37.500 0.00 0.00 0.00 4.26
4280 7295 4.685924 ACAGTTTCAATGTCCTTTTGCTG 58.314 39.130 0.00 0.00 0.00 4.41
4281 7296 4.646492 AGACAGTTTCAATGTCCTTTTGCT 59.354 37.500 0.89 0.00 46.68 3.91
4282 7297 4.741676 CAGACAGTTTCAATGTCCTTTTGC 59.258 41.667 0.89 0.00 46.68 3.68
4283 7298 5.894807 ACAGACAGTTTCAATGTCCTTTTG 58.105 37.500 0.89 0.00 46.68 2.44
4285 7300 5.531287 GGTACAGACAGTTTCAATGTCCTTT 59.469 40.000 0.89 0.00 46.68 3.11
4287 7302 4.348168 AGGTACAGACAGTTTCAATGTCCT 59.652 41.667 0.89 0.00 46.68 3.85
4288 7303 4.452455 CAGGTACAGACAGTTTCAATGTCC 59.548 45.833 0.89 0.00 46.68 4.02
4289 7304 5.297547 TCAGGTACAGACAGTTTCAATGTC 58.702 41.667 0.00 0.00 46.01 3.06
4290 7305 5.290493 TCAGGTACAGACAGTTTCAATGT 57.710 39.130 0.00 0.00 0.00 2.71
4293 7308 5.545063 TGATCAGGTACAGACAGTTTCAA 57.455 39.130 0.00 0.00 0.00 2.69
4295 7310 5.784177 TCTTGATCAGGTACAGACAGTTTC 58.216 41.667 4.57 0.00 0.00 2.78
4296 7311 5.808366 TCTTGATCAGGTACAGACAGTTT 57.192 39.130 4.57 0.00 0.00 2.66
4297 7312 5.279708 CCTTCTTGATCAGGTACAGACAGTT 60.280 44.000 4.57 0.00 0.00 3.16
4298 7313 4.221703 CCTTCTTGATCAGGTACAGACAGT 59.778 45.833 4.57 0.00 0.00 3.55
4299 7314 4.221703 ACCTTCTTGATCAGGTACAGACAG 59.778 45.833 4.57 1.90 41.97 3.51
4300 7315 4.160329 ACCTTCTTGATCAGGTACAGACA 58.840 43.478 4.57 0.00 41.97 3.41
4301 7316 4.220821 TGACCTTCTTGATCAGGTACAGAC 59.779 45.833 4.57 0.00 43.94 3.51
4302 7317 4.416516 TGACCTTCTTGATCAGGTACAGA 58.583 43.478 4.57 0.00 43.94 3.41
4303 7318 4.808414 TGACCTTCTTGATCAGGTACAG 57.192 45.455 4.57 0.00 43.94 2.74
4304 7319 5.719563 TGTATGACCTTCTTGATCAGGTACA 59.280 40.000 4.57 3.72 43.94 2.90
4305 7320 6.043411 GTGTATGACCTTCTTGATCAGGTAC 58.957 44.000 4.57 1.25 43.94 3.34
4306 7321 5.128827 GGTGTATGACCTTCTTGATCAGGTA 59.871 44.000 4.57 0.00 43.94 3.08
4307 7322 4.080863 GGTGTATGACCTTCTTGATCAGGT 60.081 45.833 4.11 4.11 46.78 4.00
4310 7325 5.497464 TTGGTGTATGACCTTCTTGATCA 57.503 39.130 0.00 0.00 46.32 2.92
4311 7326 7.396540 AAATTGGTGTATGACCTTCTTGATC 57.603 36.000 0.00 0.00 46.32 2.92
4312 7327 8.328758 TCTAAATTGGTGTATGACCTTCTTGAT 58.671 33.333 0.00 0.00 46.32 2.57
4313 7328 7.685481 TCTAAATTGGTGTATGACCTTCTTGA 58.315 34.615 0.00 0.00 46.32 3.02
4314 7329 7.607991 ACTCTAAATTGGTGTATGACCTTCTTG 59.392 37.037 0.00 0.00 46.32 3.02
4315 7330 7.690256 ACTCTAAATTGGTGTATGACCTTCTT 58.310 34.615 0.00 0.00 46.32 2.52
4316 7331 7.181125 AGACTCTAAATTGGTGTATGACCTTCT 59.819 37.037 0.00 0.00 46.32 2.85
4317 7332 7.331791 AGACTCTAAATTGGTGTATGACCTTC 58.668 38.462 0.00 0.00 46.32 3.46
4318 7333 7.259088 AGACTCTAAATTGGTGTATGACCTT 57.741 36.000 0.00 0.00 46.32 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.