Multiple sequence alignment - TraesCS7D01G005500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G005500 chr7D 100.000 5594 0 0 1 5594 2649074 2654667 0.000000e+00 10331.0
1 TraesCS7D01G005500 chr7D 88.141 2496 257 25 2590 5074 2409276 2411743 0.000000e+00 2933.0
2 TraesCS7D01G005500 chr7D 87.540 2207 260 14 2580 4777 3857824 3855624 0.000000e+00 2538.0
3 TraesCS7D01G005500 chr7D 79.985 2713 425 66 2481 5138 3688219 3690868 0.000000e+00 1893.0
4 TraesCS7D01G005500 chr7D 82.504 1166 144 31 987 2143 3685928 3687042 0.000000e+00 968.0
5 TraesCS7D01G005500 chr7D 89.207 593 40 12 4810 5384 3855624 3855038 0.000000e+00 719.0
6 TraesCS7D01G005500 chr7D 77.460 945 170 25 932 1837 3858796 3857856 4.960000e-145 525.0
7 TraesCS7D01G005500 chr7D 95.109 184 9 0 5400 5583 3854969 3854786 1.970000e-74 291.0
8 TraesCS7D01G005500 chr7D 76.702 382 71 12 1023 1392 9309706 9310081 4.420000e-46 196.0
9 TraesCS7D01G005500 chr7D 95.789 95 4 0 5262 5356 2411920 2412014 2.700000e-33 154.0
10 TraesCS7D01G005500 chr7D 74.474 333 63 14 4536 4858 3894583 3894903 2.120000e-24 124.0
11 TraesCS7D01G005500 chr7D 74.627 268 51 13 1022 1276 10501205 10500942 9.910000e-18 102.0
12 TraesCS7D01G005500 chr7D 82.418 91 15 1 338 427 3859295 3859205 1.670000e-10 78.7
13 TraesCS7D01G005500 chr4A 86.632 3037 331 37 2583 5592 739629542 739626554 0.000000e+00 3290.0
14 TraesCS7D01G005500 chr4A 87.332 2826 297 27 2583 5384 742035130 742032342 0.000000e+00 3179.0
15 TraesCS7D01G005500 chr4A 85.922 2202 272 14 2583 4777 740540210 740538040 0.000000e+00 2314.0
16 TraesCS7D01G005500 chr4A 80.312 2565 409 62 2600 5138 740209418 740206924 0.000000e+00 1851.0
17 TraesCS7D01G005500 chr4A 84.874 952 121 17 977 1913 740219874 740218931 0.000000e+00 939.0
18 TraesCS7D01G005500 chr4A 89.492 590 40 10 4810 5384 740538040 740537458 0.000000e+00 726.0
19 TraesCS7D01G005500 chr4A 81.180 627 60 31 4649 5266 740161386 740161963 8.550000e-123 451.0
20 TraesCS7D01G005500 chr4A 77.406 748 137 18 975 1697 740541137 740540397 3.120000e-112 416.0
21 TraesCS7D01G005500 chr4A 77.273 748 138 16 975 1697 742036057 742035317 1.450000e-110 411.0
22 TraesCS7D01G005500 chr4A 77.273 748 136 19 975 1697 739630467 739629729 5.220000e-110 409.0
23 TraesCS7D01G005500 chr4A 93.925 214 10 2 5382 5592 740537422 740537209 2.510000e-83 320.0
24 TraesCS7D01G005500 chr4A 93.868 212 12 1 5382 5592 742032306 742032095 9.040000e-83 318.0
25 TraesCS7D01G005500 chr4A 75.915 328 69 5 336 656 740542120 740541796 5.800000e-35 159.0
26 TraesCS7D01G005500 chr4A 93.939 99 6 0 5262 5360 741177864 741177766 3.490000e-32 150.0
27 TraesCS7D01G005500 chr4A 75.969 258 56 4 336 590 739631431 739631177 1.640000e-25 128.0
28 TraesCS7D01G005500 chr4A 83.200 125 14 4 731 849 739728513 739728390 2.130000e-19 108.0
29 TraesCS7D01G005500 chr4A 83.065 124 16 2 731 849 742123748 742123625 2.130000e-19 108.0
30 TraesCS7D01G005500 chr4A 74.721 269 49 14 1022 1276 728503788 728503525 9.910000e-18 102.0
31 TraesCS7D01G005500 chr4A 86.301 73 10 0 5262 5334 741870842 741870770 4.650000e-11 80.5
32 TraesCS7D01G005500 chr7A 91.697 2216 117 20 466 2648 3272697 3274878 0.000000e+00 3011.0
33 TraesCS7D01G005500 chr7A 88.598 2447 245 16 2600 5036 3780580 3783002 0.000000e+00 2942.0
34 TraesCS7D01G005500 chr7A 87.165 2571 297 14 2580 5141 2828257 2830803 0.000000e+00 2889.0
35 TraesCS7D01G005500 chr7A 86.227 2534 318 12 2580 5103 2094303 2096815 0.000000e+00 2717.0
36 TraesCS7D01G005500 chr7A 77.943 739 135 14 980 1695 2827338 2828071 2.390000e-118 436.0
37 TraesCS7D01G005500 chr7A 77.793 734 140 11 981 1695 2093388 2094117 1.110000e-116 431.0
38 TraesCS7D01G005500 chr7A 90.068 292 19 6 5100 5384 2096950 2097238 2.460000e-98 370.0
39 TraesCS7D01G005500 chr7A 89.015 264 28 1 76 339 30904832 30905094 5.400000e-85 326.0
40 TraesCS7D01G005500 chr7A 96.907 194 5 1 5400 5592 2831076 2831269 1.940000e-84 324.0
41 TraesCS7D01G005500 chr7A 94.845 194 9 1 5400 5592 2097298 2097491 9.110000e-78 302.0
42 TraesCS7D01G005500 chr7A 92.857 196 9 4 5191 5384 2830824 2831016 4.270000e-71 279.0
43 TraesCS7D01G005500 chr7A 96.460 113 4 0 5079 5191 3783005 3783117 2.660000e-43 187.0
44 TraesCS7D01G005500 chr7A 74.403 461 86 23 4410 4855 3217166 3216723 9.640000e-38 169.0
45 TraesCS7D01G005500 chr1B 91.538 260 21 1 76 335 643182110 643182368 1.920000e-94 357.0
46 TraesCS7D01G005500 chr5B 90.189 265 25 1 77 341 467382961 467383224 1.490000e-90 344.0
47 TraesCS7D01G005500 chr6B 90.000 260 26 0 77 336 9480358 9480617 2.500000e-88 337.0
48 TraesCS7D01G005500 chr5D 90.038 261 24 2 77 336 510468266 510468525 2.500000e-88 337.0
49 TraesCS7D01G005500 chrUn 89.575 259 27 0 77 335 96940802 96941060 4.180000e-86 329.0
50 TraesCS7D01G005500 chrUn 75.969 258 56 4 336 590 444984466 444984720 1.640000e-25 128.0
51 TraesCS7D01G005500 chr3A 89.655 261 24 3 76 335 74674945 74675203 4.180000e-86 329.0
52 TraesCS7D01G005500 chr5A 89.575 259 26 1 77 335 5293950 5293693 1.500000e-85 327.0
53 TraesCS7D01G005500 chr3B 88.278 273 31 1 64 335 803044423 803044151 5.400000e-85 326.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G005500 chr7D 2649074 2654667 5593 False 10331.000000 10331 100.000000 1 5594 1 chr7D.!!$F1 5593
1 TraesCS7D01G005500 chr7D 2409276 2412014 2738 False 1543.500000 2933 91.965000 2590 5356 2 chr7D.!!$F4 2766
2 TraesCS7D01G005500 chr7D 3685928 3690868 4940 False 1430.500000 1893 81.244500 987 5138 2 chr7D.!!$F5 4151
3 TraesCS7D01G005500 chr7D 3854786 3859295 4509 True 830.340000 2538 86.346800 338 5583 5 chr7D.!!$R2 5245
4 TraesCS7D01G005500 chr4A 740206924 740209418 2494 True 1851.000000 1851 80.312000 2600 5138 1 chr4A.!!$R3 2538
5 TraesCS7D01G005500 chr4A 742032095 742036057 3962 True 1302.666667 3179 86.157667 975 5592 3 chr4A.!!$R10 4617
6 TraesCS7D01G005500 chr4A 739626554 739631431 4877 True 1275.666667 3290 79.958000 336 5592 3 chr4A.!!$R8 5256
7 TraesCS7D01G005500 chr4A 740218931 740219874 943 True 939.000000 939 84.874000 977 1913 1 chr4A.!!$R4 936
8 TraesCS7D01G005500 chr4A 740537209 740542120 4911 True 787.000000 2314 84.532000 336 5592 5 chr4A.!!$R9 5256
9 TraesCS7D01G005500 chr4A 740161386 740161963 577 False 451.000000 451 81.180000 4649 5266 1 chr4A.!!$F1 617
10 TraesCS7D01G005500 chr7A 3272697 3274878 2181 False 3011.000000 3011 91.697000 466 2648 1 chr7A.!!$F1 2182
11 TraesCS7D01G005500 chr7A 3780580 3783117 2537 False 1564.500000 2942 92.529000 2600 5191 2 chr7A.!!$F5 2591
12 TraesCS7D01G005500 chr7A 2827338 2831269 3931 False 982.000000 2889 88.718000 980 5592 4 chr7A.!!$F4 4612
13 TraesCS7D01G005500 chr7A 2093388 2097491 4103 False 955.000000 2717 87.233250 981 5592 4 chr7A.!!$F3 4611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.033504 TAGTTGCGCTATAGCTGCCC 59.966 55.0 27.09 20.53 38.89 5.36 F
866 876 0.036388 CTGCTCGGGGCTTGTTTCTA 60.036 55.0 0.00 0.00 42.39 2.10 F
1478 1936 0.108424 GAGCAGACAGAGACGGCAAT 60.108 55.0 0.00 0.00 0.00 3.56 F
3140 4576 0.179073 CCAAGTGGTCGCCCTATCAG 60.179 60.0 0.00 0.00 0.00 2.90 F
3345 4781 0.463654 AGTTTGTCCTGCGCAAGTCA 60.464 50.0 13.05 6.71 41.68 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1936 0.599204 GCCGTCGTCTTCTTTGGTCA 60.599 55.0 0.00 0.0 0.00 4.02 R
2686 4106 0.038618 CCCGCAAAGGCCACTTTTAC 60.039 55.0 5.01 0.0 44.26 2.01 R
3349 4785 0.379316 ACGGTGACAAAGTTTTCGGC 59.621 50.0 0.00 0.0 0.00 5.54 R
4234 5670 0.037447 AGGGCAGCAAGGAAGTCTTC 59.963 55.0 3.80 3.8 32.41 2.87 R
4704 6163 0.164647 CTCGCAACTTGTACTGCTGC 59.835 55.0 3.66 0.0 36.38 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.812652 CATTTTGCAAATGCTGAAACTTGT 58.187 33.333 13.65 0.00 42.66 3.16
24 25 4.861389 TTTGCAAATGCTGAAACTTGTG 57.139 36.364 8.05 0.00 42.66 3.33
25 26 3.797451 TGCAAATGCTGAAACTTGTGA 57.203 38.095 6.97 0.00 42.66 3.58
26 27 4.120792 TGCAAATGCTGAAACTTGTGAA 57.879 36.364 6.97 0.00 42.66 3.18
27 28 4.114073 TGCAAATGCTGAAACTTGTGAAG 58.886 39.130 6.97 0.00 42.66 3.02
28 29 4.142204 TGCAAATGCTGAAACTTGTGAAGA 60.142 37.500 6.97 0.00 42.66 2.87
29 30 4.986659 GCAAATGCTGAAACTTGTGAAGAT 59.013 37.500 0.00 0.00 38.21 2.40
30 31 6.151691 GCAAATGCTGAAACTTGTGAAGATA 58.848 36.000 0.00 0.00 38.21 1.98
31 32 6.810182 GCAAATGCTGAAACTTGTGAAGATAT 59.190 34.615 0.00 0.00 38.21 1.63
32 33 7.970061 GCAAATGCTGAAACTTGTGAAGATATA 59.030 33.333 0.00 0.00 38.21 0.86
33 34 9.844790 CAAATGCTGAAACTTGTGAAGATATAA 57.155 29.630 0.00 0.00 0.00 0.98
37 38 9.013229 TGCTGAAACTTGTGAAGATATAAATGT 57.987 29.630 0.00 0.00 0.00 2.71
38 39 9.846248 GCTGAAACTTGTGAAGATATAAATGTT 57.154 29.630 0.00 0.00 0.00 2.71
47 48 8.682710 TGTGAAGATATAAATGTTTTGGTAGCC 58.317 33.333 0.00 0.00 0.00 3.93
48 49 7.855904 GTGAAGATATAAATGTTTTGGTAGCCG 59.144 37.037 0.00 0.00 0.00 5.52
49 50 7.554835 TGAAGATATAAATGTTTTGGTAGCCGT 59.445 33.333 0.00 0.00 0.00 5.68
50 51 7.259290 AGATATAAATGTTTTGGTAGCCGTG 57.741 36.000 0.00 0.00 0.00 4.94
51 52 6.826741 AGATATAAATGTTTTGGTAGCCGTGT 59.173 34.615 0.00 0.00 0.00 4.49
52 53 3.363341 AAATGTTTTGGTAGCCGTGTG 57.637 42.857 0.00 0.00 0.00 3.82
53 54 1.243902 ATGTTTTGGTAGCCGTGTGG 58.756 50.000 0.00 0.00 38.77 4.17
54 55 0.107116 TGTTTTGGTAGCCGTGTGGT 60.107 50.000 0.00 0.00 37.67 4.16
55 56 0.309612 GTTTTGGTAGCCGTGTGGTG 59.690 55.000 0.00 0.00 37.67 4.17
56 57 0.107116 TTTTGGTAGCCGTGTGGTGT 60.107 50.000 0.00 0.00 37.67 4.16
57 58 0.816018 TTTGGTAGCCGTGTGGTGTG 60.816 55.000 0.00 0.00 37.67 3.82
58 59 1.687297 TTGGTAGCCGTGTGGTGTGA 61.687 55.000 0.00 0.00 37.67 3.58
59 60 1.666872 GGTAGCCGTGTGGTGTGAC 60.667 63.158 0.00 0.00 37.67 3.67
60 61 1.068417 GTAGCCGTGTGGTGTGACA 59.932 57.895 0.00 0.00 37.67 3.58
61 62 0.944311 GTAGCCGTGTGGTGTGACAG 60.944 60.000 0.00 0.00 37.67 3.51
62 63 1.396607 TAGCCGTGTGGTGTGACAGT 61.397 55.000 0.00 0.00 37.67 3.55
63 64 1.068417 GCCGTGTGGTGTGACAGTA 59.932 57.895 0.00 0.00 37.67 2.74
64 65 0.944311 GCCGTGTGGTGTGACAGTAG 60.944 60.000 0.00 0.00 37.67 2.57
65 66 0.387929 CCGTGTGGTGTGACAGTAGT 59.612 55.000 0.00 0.00 0.00 2.73
66 67 1.602165 CCGTGTGGTGTGACAGTAGTC 60.602 57.143 0.00 0.00 45.19 2.59
67 68 1.337071 CGTGTGGTGTGACAGTAGTCT 59.663 52.381 0.00 0.00 45.20 3.24
68 69 2.551032 CGTGTGGTGTGACAGTAGTCTA 59.449 50.000 0.00 0.00 45.20 2.59
69 70 3.608707 CGTGTGGTGTGACAGTAGTCTAC 60.609 52.174 1.39 1.39 45.20 2.59
70 71 3.568853 GTGTGGTGTGACAGTAGTCTACT 59.431 47.826 6.71 6.71 45.20 2.57
83 84 6.945938 AGTAGTCTACTGAACGCATAGATT 57.054 37.500 11.88 0.00 37.69 2.40
85 86 8.447924 AGTAGTCTACTGAACGCATAGATTAA 57.552 34.615 11.88 0.00 37.69 1.40
86 87 8.900781 AGTAGTCTACTGAACGCATAGATTAAA 58.099 33.333 11.88 0.00 37.69 1.52
87 88 9.512435 GTAGTCTACTGAACGCATAGATTAAAA 57.488 33.333 2.53 0.00 0.00 1.52
91 92 9.193133 TCTACTGAACGCATAGATTAAAATAGC 57.807 33.333 0.00 0.00 0.00 2.97
92 93 7.190920 ACTGAACGCATAGATTAAAATAGCC 57.809 36.000 0.00 0.00 0.00 3.93
93 94 6.992715 ACTGAACGCATAGATTAAAATAGCCT 59.007 34.615 0.00 0.00 0.00 4.58
94 95 7.041780 ACTGAACGCATAGATTAAAATAGCCTG 60.042 37.037 0.00 0.00 0.00 4.85
95 96 6.204688 TGAACGCATAGATTAAAATAGCCTGG 59.795 38.462 0.00 0.00 0.00 4.45
96 97 5.865085 ACGCATAGATTAAAATAGCCTGGA 58.135 37.500 0.00 0.00 0.00 3.86
97 98 6.296026 ACGCATAGATTAAAATAGCCTGGAA 58.704 36.000 0.00 0.00 0.00 3.53
98 99 6.770785 ACGCATAGATTAAAATAGCCTGGAAA 59.229 34.615 0.00 0.00 0.00 3.13
99 100 7.284489 ACGCATAGATTAAAATAGCCTGGAAAA 59.716 33.333 0.00 0.00 0.00 2.29
100 101 8.299570 CGCATAGATTAAAATAGCCTGGAAAAT 58.700 33.333 0.00 0.00 0.00 1.82
104 105 8.183104 AGATTAAAATAGCCTGGAAAATAGCC 57.817 34.615 0.00 0.00 0.00 3.93
105 106 4.918810 AAAATAGCCTGGAAAATAGCCG 57.081 40.909 0.00 0.00 0.00 5.52
106 107 1.897560 ATAGCCTGGAAAATAGCCGC 58.102 50.000 0.00 0.00 0.00 6.53
107 108 0.544223 TAGCCTGGAAAATAGCCGCA 59.456 50.000 0.00 0.00 0.00 5.69
108 109 0.323360 AGCCTGGAAAATAGCCGCAA 60.323 50.000 0.00 0.00 0.00 4.85
109 110 0.746659 GCCTGGAAAATAGCCGCAAT 59.253 50.000 0.00 0.00 0.00 3.56
110 111 1.953686 GCCTGGAAAATAGCCGCAATA 59.046 47.619 0.00 0.00 0.00 1.90
111 112 2.030805 GCCTGGAAAATAGCCGCAATAG 60.031 50.000 0.00 0.00 0.00 1.73
112 113 3.214328 CCTGGAAAATAGCCGCAATAGT 58.786 45.455 0.00 0.00 0.00 2.12
113 114 3.632145 CCTGGAAAATAGCCGCAATAGTT 59.368 43.478 0.00 0.00 0.00 2.24
114 115 4.498009 CCTGGAAAATAGCCGCAATAGTTG 60.498 45.833 0.00 0.00 0.00 3.16
126 127 3.446184 CAATAGTTGCGCTATAGCTGC 57.554 47.619 24.99 24.99 39.36 5.25
127 128 2.086054 ATAGTTGCGCTATAGCTGCC 57.914 50.000 27.09 17.86 38.56 4.85
128 129 0.033504 TAGTTGCGCTATAGCTGCCC 59.966 55.000 27.09 20.53 38.89 5.36
129 130 2.280119 TTGCGCTATAGCTGCCCG 60.280 61.111 27.09 13.43 38.89 6.13
130 131 3.807631 TTGCGCTATAGCTGCCCGG 62.808 63.158 27.09 12.85 38.89 5.73
132 133 3.303135 CGCTATAGCTGCCCGGGA 61.303 66.667 29.31 8.79 39.32 5.14
133 134 2.659610 GCTATAGCTGCCCGGGAG 59.340 66.667 29.31 19.83 38.21 4.30
134 135 2.659610 CTATAGCTGCCCGGGAGC 59.340 66.667 29.31 28.32 36.65 4.70
135 136 2.923035 TATAGCTGCCCGGGAGCC 60.923 66.667 29.89 16.37 37.12 4.70
136 137 3.468390 TATAGCTGCCCGGGAGCCT 62.468 63.158 29.89 22.78 37.12 4.58
137 138 2.965226 TATAGCTGCCCGGGAGCCTT 62.965 60.000 29.89 22.63 37.12 4.35
148 149 4.821589 GAGCCTTGCCGCTACGCT 62.822 66.667 0.00 0.00 39.87 5.07
149 150 3.426117 GAGCCTTGCCGCTACGCTA 62.426 63.158 0.00 0.00 39.87 4.26
150 151 2.280186 GCCTTGCCGCTACGCTAT 60.280 61.111 0.00 0.00 0.00 2.97
151 152 2.598632 GCCTTGCCGCTACGCTATG 61.599 63.158 0.00 0.00 0.00 2.23
152 153 1.956170 CCTTGCCGCTACGCTATGG 60.956 63.158 0.00 0.00 0.00 2.74
155 156 2.649034 GCCGCTACGCTATGGCTA 59.351 61.111 0.00 0.00 44.16 3.93
156 157 1.733399 GCCGCTACGCTATGGCTAC 60.733 63.158 0.00 0.00 44.16 3.58
157 158 1.957562 CCGCTACGCTATGGCTACT 59.042 57.895 0.00 0.00 36.09 2.57
158 159 0.387367 CCGCTACGCTATGGCTACTG 60.387 60.000 0.00 0.00 36.09 2.74
159 160 1.004277 CGCTACGCTATGGCTACTGC 61.004 60.000 0.00 0.00 36.09 4.40
169 170 3.014856 GCTACTGCCGCGAAATCC 58.985 61.111 8.23 0.00 0.00 3.01
170 171 1.521681 GCTACTGCCGCGAAATCCT 60.522 57.895 8.23 0.00 0.00 3.24
171 172 1.090052 GCTACTGCCGCGAAATCCTT 61.090 55.000 8.23 0.00 0.00 3.36
172 173 0.931005 CTACTGCCGCGAAATCCTTC 59.069 55.000 8.23 0.00 0.00 3.46
173 174 0.248012 TACTGCCGCGAAATCCTTCA 59.752 50.000 8.23 0.00 0.00 3.02
174 175 1.298859 ACTGCCGCGAAATCCTTCAC 61.299 55.000 8.23 0.00 0.00 3.18
175 176 1.298157 CTGCCGCGAAATCCTTCACA 61.298 55.000 8.23 0.00 0.00 3.58
176 177 0.886938 TGCCGCGAAATCCTTCACAA 60.887 50.000 8.23 0.00 0.00 3.33
177 178 0.239879 GCCGCGAAATCCTTCACAAA 59.760 50.000 8.23 0.00 0.00 2.83
178 179 1.135402 GCCGCGAAATCCTTCACAAAT 60.135 47.619 8.23 0.00 0.00 2.32
179 180 2.785679 CCGCGAAATCCTTCACAAATC 58.214 47.619 8.23 0.00 0.00 2.17
180 181 2.477863 CCGCGAAATCCTTCACAAATCC 60.478 50.000 8.23 0.00 0.00 3.01
181 182 2.477863 CGCGAAATCCTTCACAAATCCC 60.478 50.000 0.00 0.00 0.00 3.85
182 183 2.755103 GCGAAATCCTTCACAAATCCCT 59.245 45.455 0.00 0.00 0.00 4.20
183 184 3.181496 GCGAAATCCTTCACAAATCCCTC 60.181 47.826 0.00 0.00 0.00 4.30
184 185 4.265073 CGAAATCCTTCACAAATCCCTCT 58.735 43.478 0.00 0.00 0.00 3.69
185 186 5.428253 CGAAATCCTTCACAAATCCCTCTA 58.572 41.667 0.00 0.00 0.00 2.43
186 187 5.880332 CGAAATCCTTCACAAATCCCTCTAA 59.120 40.000 0.00 0.00 0.00 2.10
187 188 6.374333 CGAAATCCTTCACAAATCCCTCTAAA 59.626 38.462 0.00 0.00 0.00 1.85
188 189 7.067494 CGAAATCCTTCACAAATCCCTCTAAAT 59.933 37.037 0.00 0.00 0.00 1.40
189 190 7.651027 AATCCTTCACAAATCCCTCTAAATG 57.349 36.000 0.00 0.00 0.00 2.32
190 191 5.509498 TCCTTCACAAATCCCTCTAAATGG 58.491 41.667 0.00 0.00 0.00 3.16
191 192 4.098501 CCTTCACAAATCCCTCTAAATGGC 59.901 45.833 0.00 0.00 0.00 4.40
192 193 4.591321 TCACAAATCCCTCTAAATGGCT 57.409 40.909 0.00 0.00 0.00 4.75
193 194 4.526970 TCACAAATCCCTCTAAATGGCTC 58.473 43.478 0.00 0.00 0.00 4.70
194 195 4.018506 TCACAAATCCCTCTAAATGGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
195 196 4.706476 CACAAATCCCTCTAAATGGCTCAA 59.294 41.667 0.00 0.00 0.00 3.02
196 197 4.952335 ACAAATCCCTCTAAATGGCTCAAG 59.048 41.667 0.00 0.00 0.00 3.02
197 198 5.195940 CAAATCCCTCTAAATGGCTCAAGA 58.804 41.667 0.00 0.00 0.00 3.02
198 199 5.456921 AATCCCTCTAAATGGCTCAAGAA 57.543 39.130 0.00 0.00 0.00 2.52
199 200 5.659849 ATCCCTCTAAATGGCTCAAGAAT 57.340 39.130 0.00 0.00 0.00 2.40
200 201 5.041191 TCCCTCTAAATGGCTCAAGAATC 57.959 43.478 0.00 0.00 0.00 2.52
201 202 4.474651 TCCCTCTAAATGGCTCAAGAATCA 59.525 41.667 0.00 0.00 0.00 2.57
202 203 4.820716 CCCTCTAAATGGCTCAAGAATCAG 59.179 45.833 0.00 0.00 0.00 2.90
203 204 4.275443 CCTCTAAATGGCTCAAGAATCAGC 59.725 45.833 0.00 0.00 34.65 4.26
204 205 4.847198 TCTAAATGGCTCAAGAATCAGCA 58.153 39.130 0.00 0.00 37.38 4.41
205 206 5.255687 TCTAAATGGCTCAAGAATCAGCAA 58.744 37.500 0.00 0.00 37.38 3.91
206 207 4.877378 AAATGGCTCAAGAATCAGCAAA 57.123 36.364 0.00 0.00 37.38 3.68
207 208 4.877378 AATGGCTCAAGAATCAGCAAAA 57.123 36.364 0.00 0.00 37.38 2.44
208 209 3.648339 TGGCTCAAGAATCAGCAAAAC 57.352 42.857 0.00 0.00 37.38 2.43
209 210 2.297033 TGGCTCAAGAATCAGCAAAACC 59.703 45.455 0.00 0.00 37.38 3.27
210 211 2.589014 GCTCAAGAATCAGCAAAACCG 58.411 47.619 0.00 0.00 35.56 4.44
211 212 2.030805 GCTCAAGAATCAGCAAAACCGT 60.031 45.455 0.00 0.00 35.56 4.83
212 213 3.814945 CTCAAGAATCAGCAAAACCGTC 58.185 45.455 0.00 0.00 0.00 4.79
213 214 2.552315 TCAAGAATCAGCAAAACCGTCC 59.448 45.455 0.00 0.00 0.00 4.79
214 215 2.270352 AGAATCAGCAAAACCGTCCA 57.730 45.000 0.00 0.00 0.00 4.02
215 216 2.154462 AGAATCAGCAAAACCGTCCAG 58.846 47.619 0.00 0.00 0.00 3.86
216 217 2.151202 GAATCAGCAAAACCGTCCAGA 58.849 47.619 0.00 0.00 0.00 3.86
217 218 2.270352 ATCAGCAAAACCGTCCAGAA 57.730 45.000 0.00 0.00 0.00 3.02
218 219 2.045561 TCAGCAAAACCGTCCAGAAA 57.954 45.000 0.00 0.00 0.00 2.52
219 220 2.582052 TCAGCAAAACCGTCCAGAAAT 58.418 42.857 0.00 0.00 0.00 2.17
220 221 2.552315 TCAGCAAAACCGTCCAGAAATC 59.448 45.455 0.00 0.00 0.00 2.17
221 222 2.293122 CAGCAAAACCGTCCAGAAATCA 59.707 45.455 0.00 0.00 0.00 2.57
222 223 3.057315 CAGCAAAACCGTCCAGAAATCAT 60.057 43.478 0.00 0.00 0.00 2.45
223 224 3.191371 AGCAAAACCGTCCAGAAATCATC 59.809 43.478 0.00 0.00 0.00 2.92
224 225 3.191371 GCAAAACCGTCCAGAAATCATCT 59.809 43.478 0.00 0.00 39.68 2.90
225 226 4.672801 GCAAAACCGTCCAGAAATCATCTC 60.673 45.833 0.00 0.00 35.73 2.75
226 227 4.559862 AAACCGTCCAGAAATCATCTCT 57.440 40.909 0.00 0.00 35.73 3.10
227 228 3.810310 ACCGTCCAGAAATCATCTCTC 57.190 47.619 0.00 0.00 35.73 3.20
228 229 2.432510 ACCGTCCAGAAATCATCTCTCC 59.567 50.000 0.00 0.00 35.73 3.71
229 230 2.224161 CCGTCCAGAAATCATCTCTCCC 60.224 54.545 0.00 0.00 35.73 4.30
230 231 2.432146 CGTCCAGAAATCATCTCTCCCA 59.568 50.000 0.00 0.00 35.73 4.37
231 232 3.070734 CGTCCAGAAATCATCTCTCCCAT 59.929 47.826 0.00 0.00 35.73 4.00
232 233 4.640364 GTCCAGAAATCATCTCTCCCATC 58.360 47.826 0.00 0.00 35.73 3.51
233 234 4.102210 GTCCAGAAATCATCTCTCCCATCA 59.898 45.833 0.00 0.00 35.73 3.07
234 235 4.347292 TCCAGAAATCATCTCTCCCATCAG 59.653 45.833 0.00 0.00 35.73 2.90
235 236 4.347292 CCAGAAATCATCTCTCCCATCAGA 59.653 45.833 0.00 0.00 35.73 3.27
236 237 5.163227 CCAGAAATCATCTCTCCCATCAGAA 60.163 44.000 0.00 0.00 35.73 3.02
237 238 6.354938 CAGAAATCATCTCTCCCATCAGAAA 58.645 40.000 0.00 0.00 35.73 2.52
238 239 6.827251 CAGAAATCATCTCTCCCATCAGAAAA 59.173 38.462 0.00 0.00 35.73 2.29
239 240 7.502895 CAGAAATCATCTCTCCCATCAGAAAAT 59.497 37.037 0.00 0.00 35.73 1.82
240 241 8.060075 AGAAATCATCTCTCCCATCAGAAAATT 58.940 33.333 0.00 0.00 30.46 1.82
241 242 8.605325 AAATCATCTCTCCCATCAGAAAATTT 57.395 30.769 0.00 0.00 0.00 1.82
242 243 8.605325 AATCATCTCTCCCATCAGAAAATTTT 57.395 30.769 2.28 2.28 0.00 1.82
243 244 7.636150 TCATCTCTCCCATCAGAAAATTTTC 57.364 36.000 21.00 21.00 37.45 2.29
256 257 4.627035 AGAAAATTTTCTGCTATTTGCCGC 59.373 37.500 28.35 1.07 45.27 6.53
257 258 2.193306 ATTTTCTGCTATTTGCCGCG 57.807 45.000 0.00 0.00 42.00 6.46
258 259 1.160989 TTTTCTGCTATTTGCCGCGA 58.839 45.000 8.23 0.00 42.00 5.87
259 260 1.378531 TTTCTGCTATTTGCCGCGAT 58.621 45.000 8.23 0.00 42.00 4.58
260 261 1.378531 TTCTGCTATTTGCCGCGATT 58.621 45.000 8.23 0.00 42.00 3.34
261 262 0.657312 TCTGCTATTTGCCGCGATTG 59.343 50.000 8.23 0.00 42.00 2.67
262 263 0.931662 CTGCTATTTGCCGCGATTGC 60.932 55.000 8.23 6.32 42.00 3.56
263 264 1.658409 GCTATTTGCCGCGATTGCC 60.658 57.895 8.23 0.00 38.08 4.52
264 265 1.008538 CTATTTGCCGCGATTGCCC 60.009 57.895 8.23 0.00 38.08 5.36
265 266 2.715864 CTATTTGCCGCGATTGCCCG 62.716 60.000 8.23 0.00 38.08 6.13
273 274 4.436515 CGATTGCCCGCTATGACA 57.563 55.556 0.00 0.00 0.00 3.58
274 275 2.229039 CGATTGCCCGCTATGACAG 58.771 57.895 0.00 0.00 0.00 3.51
284 285 1.634702 GCTATGACAGCCGCTATAGC 58.365 55.000 15.09 15.09 45.23 2.97
285 286 1.203523 GCTATGACAGCCGCTATAGCT 59.796 52.381 21.98 3.00 45.23 3.32
291 292 2.358003 GCCGCTATAGCTGCTGGG 60.358 66.667 27.86 19.26 45.80 4.45
292 293 2.872388 GCCGCTATAGCTGCTGGGA 61.872 63.158 27.86 0.00 45.80 4.37
293 294 1.291588 CCGCTATAGCTGCTGGGAG 59.708 63.158 21.98 7.61 39.32 4.30
294 295 1.181741 CCGCTATAGCTGCTGGGAGA 61.182 60.000 21.98 0.00 39.32 3.71
295 296 0.243365 CGCTATAGCTGCTGGGAGAG 59.757 60.000 21.98 4.64 39.32 3.20
296 297 0.607620 GCTATAGCTGCTGGGAGAGG 59.392 60.000 17.75 0.00 38.21 3.69
297 298 0.607620 CTATAGCTGCTGGGAGAGGC 59.392 60.000 13.43 0.00 0.00 4.70
298 299 0.189574 TATAGCTGCTGGGAGAGGCT 59.810 55.000 13.43 0.00 37.08 4.58
299 300 1.409251 ATAGCTGCTGGGAGAGGCTG 61.409 60.000 13.43 0.00 34.88 4.85
301 302 4.486503 CTGCTGGGAGAGGCTGCC 62.487 72.222 11.65 11.65 42.53 4.85
306 307 4.722700 GGGAGAGGCTGCCGCAAA 62.723 66.667 24.28 0.00 38.10 3.68
307 308 2.672996 GGAGAGGCTGCCGCAAAA 60.673 61.111 24.28 0.00 38.10 2.44
308 309 2.048603 GGAGAGGCTGCCGCAAAAT 61.049 57.895 24.28 3.17 38.10 1.82
309 310 1.431036 GAGAGGCTGCCGCAAAATC 59.569 57.895 24.28 10.09 38.10 2.17
310 311 2.100991 GAGGCTGCCGCAAAATCG 59.899 61.111 17.92 0.00 38.10 3.34
311 312 2.672996 AGGCTGCCGCAAAATCGT 60.673 55.556 13.96 0.00 38.10 3.73
312 313 2.200170 GAGGCTGCCGCAAAATCGTT 62.200 55.000 17.92 0.00 38.10 3.85
313 314 1.372872 GGCTGCCGCAAAATCGTTT 60.373 52.632 1.35 0.00 38.10 3.60
314 315 1.344226 GGCTGCCGCAAAATCGTTTC 61.344 55.000 1.35 0.00 38.10 2.78
315 316 0.387239 GCTGCCGCAAAATCGTTTCT 60.387 50.000 0.00 0.00 35.78 2.52
316 317 1.606606 CTGCCGCAAAATCGTTTCTC 58.393 50.000 0.00 0.00 0.00 2.87
317 318 0.239879 TGCCGCAAAATCGTTTCTCC 59.760 50.000 0.00 0.00 0.00 3.71
318 319 0.456142 GCCGCAAAATCGTTTCTCCC 60.456 55.000 0.00 0.00 0.00 4.30
319 320 0.179200 CCGCAAAATCGTTTCTCCCG 60.179 55.000 0.00 0.00 0.00 5.14
320 321 0.793104 CGCAAAATCGTTTCTCCCGC 60.793 55.000 0.00 0.00 0.00 6.13
321 322 0.239879 GCAAAATCGTTTCTCCCGCA 59.760 50.000 0.00 0.00 0.00 5.69
322 323 1.335506 GCAAAATCGTTTCTCCCGCAA 60.336 47.619 0.00 0.00 0.00 4.85
323 324 2.671070 GCAAAATCGTTTCTCCCGCAAT 60.671 45.455 0.00 0.00 0.00 3.56
324 325 3.574614 CAAAATCGTTTCTCCCGCAATT 58.425 40.909 0.00 0.00 0.00 2.32
325 326 3.934457 AAATCGTTTCTCCCGCAATTT 57.066 38.095 0.00 0.00 0.00 1.82
326 327 3.934457 AATCGTTTCTCCCGCAATTTT 57.066 38.095 0.00 0.00 0.00 1.82
327 328 5.379732 AAATCGTTTCTCCCGCAATTTTA 57.620 34.783 0.00 0.00 0.00 1.52
328 329 5.379732 AATCGTTTCTCCCGCAATTTTAA 57.620 34.783 0.00 0.00 0.00 1.52
329 330 5.576447 ATCGTTTCTCCCGCAATTTTAAT 57.424 34.783 0.00 0.00 0.00 1.40
330 331 4.976987 TCGTTTCTCCCGCAATTTTAATC 58.023 39.130 0.00 0.00 0.00 1.75
331 332 4.698304 TCGTTTCTCCCGCAATTTTAATCT 59.302 37.500 0.00 0.00 0.00 2.40
332 333 5.875910 TCGTTTCTCCCGCAATTTTAATCTA 59.124 36.000 0.00 0.00 0.00 1.98
333 334 6.540914 TCGTTTCTCCCGCAATTTTAATCTAT 59.459 34.615 0.00 0.00 0.00 1.98
334 335 6.632834 CGTTTCTCCCGCAATTTTAATCTATG 59.367 38.462 0.00 0.00 0.00 2.23
350 351 9.661563 TTTAATCTATGACTGAACGGTAACATT 57.338 29.630 0.00 0.00 0.00 2.71
352 353 6.032956 TCTATGACTGAACGGTAACATTGT 57.967 37.500 0.00 0.00 0.00 2.71
389 391 2.919229 GCAAATGCAAAGTTGATCCTCG 59.081 45.455 11.19 0.00 41.59 4.63
390 392 3.504863 CAAATGCAAAGTTGATCCTCGG 58.495 45.455 0.00 0.00 0.00 4.63
393 395 1.202758 TGCAAAGTTGATCCTCGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
400 402 0.817654 TGATCCTCGGTGTGTGCTAG 59.182 55.000 0.00 0.00 0.00 3.42
404 406 0.603569 CCTCGGTGTGTGCTAGACTT 59.396 55.000 0.00 0.00 0.00 3.01
405 407 1.402984 CCTCGGTGTGTGCTAGACTTC 60.403 57.143 0.00 0.00 0.00 3.01
408 410 1.670087 CGGTGTGTGCTAGACTTCCAG 60.670 57.143 0.00 0.00 0.00 3.86
432 434 6.942576 AGGTTGAAGTAAACTATGAATGCACT 59.057 34.615 0.00 0.00 33.57 4.40
437 439 5.815581 AGTAAACTATGAATGCACTCCCAA 58.184 37.500 0.00 0.00 0.00 4.12
438 440 6.426587 AGTAAACTATGAATGCACTCCCAAT 58.573 36.000 0.00 0.00 0.00 3.16
443 445 1.546923 TGAATGCACTCCCAATTGCTG 59.453 47.619 0.00 0.00 39.62 4.41
456 460 1.091771 ATTGCTGGATCAACGAGGCG 61.092 55.000 0.00 0.00 0.00 5.52
460 464 0.877649 CTGGATCAACGAGGCGGATG 60.878 60.000 0.00 0.00 0.00 3.51
481 485 1.144057 CCGGAGACAAGGCGCTAAT 59.856 57.895 7.64 0.00 0.00 1.73
506 510 5.956068 TGCATGAGTTAATTAGTGTGCAA 57.044 34.783 0.00 0.00 38.27 4.08
524 528 5.804473 TGTGCAACTAATGTGTCACTTTTTG 59.196 36.000 9.18 9.58 38.04 2.44
540 544 4.096231 ACTTTTTGTTTCAAATTGGCAGGC 59.904 37.500 0.00 0.00 0.00 4.85
543 547 1.483827 TGTTTCAAATTGGCAGGCACA 59.516 42.857 0.00 0.00 0.00 4.57
544 548 2.093288 TGTTTCAAATTGGCAGGCACAA 60.093 40.909 0.00 0.00 0.00 3.33
547 551 2.037901 TCAAATTGGCAGGCACAAAGA 58.962 42.857 0.00 0.00 0.00 2.52
564 570 3.997064 GAGCGCATCGACAGCCTGT 62.997 63.158 11.47 0.00 0.00 4.00
573 579 3.800628 GACAGCCTGTCAAAATGCC 57.199 52.632 19.77 0.00 46.22 4.40
597 607 7.362574 GCCAGGTTTAATTAATACACTGCTTGA 60.363 37.037 0.00 0.00 0.00 3.02
666 676 2.626582 GCTGCAGCAGTTGAGAACT 58.373 52.632 33.36 0.00 44.06 3.01
667 677 0.950116 GCTGCAGCAGTTGAGAACTT 59.050 50.000 33.36 0.00 40.46 2.66
668 678 1.334779 GCTGCAGCAGTTGAGAACTTG 60.335 52.381 33.36 0.00 40.46 3.16
669 679 2.216046 CTGCAGCAGTTGAGAACTTGA 58.784 47.619 14.90 0.00 40.46 3.02
670 680 2.216046 TGCAGCAGTTGAGAACTTGAG 58.784 47.619 0.00 0.00 40.46 3.02
671 681 2.158914 TGCAGCAGTTGAGAACTTGAGA 60.159 45.455 0.00 0.00 40.46 3.27
672 682 3.072944 GCAGCAGTTGAGAACTTGAGAT 58.927 45.455 0.00 0.00 40.46 2.75
673 683 3.120269 GCAGCAGTTGAGAACTTGAGATG 60.120 47.826 0.00 0.00 40.46 2.90
674 684 3.072944 AGCAGTTGAGAACTTGAGATGC 58.927 45.455 0.00 0.00 40.46 3.91
675 685 2.810274 GCAGTTGAGAACTTGAGATGCA 59.190 45.455 0.00 0.00 40.46 3.96
676 686 3.120269 GCAGTTGAGAACTTGAGATGCAG 60.120 47.826 0.00 0.00 40.46 4.41
677 687 4.063689 CAGTTGAGAACTTGAGATGCAGT 58.936 43.478 0.00 0.00 40.46 4.40
678 688 5.233225 CAGTTGAGAACTTGAGATGCAGTA 58.767 41.667 0.00 0.00 40.46 2.74
679 689 5.873712 CAGTTGAGAACTTGAGATGCAGTAT 59.126 40.000 0.00 0.00 40.46 2.12
680 690 6.035866 CAGTTGAGAACTTGAGATGCAGTATC 59.964 42.308 0.00 0.00 40.46 2.24
681 691 6.070881 AGTTGAGAACTTGAGATGCAGTATCT 60.071 38.462 0.00 0.00 43.37 1.98
682 692 6.291648 TGAGAACTTGAGATGCAGTATCTT 57.708 37.500 2.11 0.00 46.12 2.40
683 693 6.705302 TGAGAACTTGAGATGCAGTATCTTT 58.295 36.000 2.11 0.00 46.12 2.52
684 694 6.592994 TGAGAACTTGAGATGCAGTATCTTTG 59.407 38.462 2.11 0.00 46.12 2.77
685 695 6.471146 AGAACTTGAGATGCAGTATCTTTGT 58.529 36.000 2.11 0.27 46.12 2.83
686 696 6.939163 AGAACTTGAGATGCAGTATCTTTGTT 59.061 34.615 2.11 8.07 46.12 2.83
687 697 8.097038 AGAACTTGAGATGCAGTATCTTTGTTA 58.903 33.333 2.11 0.00 46.12 2.41
688 698 7.840342 ACTTGAGATGCAGTATCTTTGTTAG 57.160 36.000 2.11 0.09 46.12 2.34
854 864 1.442526 CTAATTGGCTGGCTGCTCGG 61.443 60.000 16.14 0.00 42.39 4.63
866 876 0.036388 CTGCTCGGGGCTTGTTTCTA 60.036 55.000 0.00 0.00 42.39 2.10
873 883 2.285977 GGGGCTTGTTTCTACGGTATG 58.714 52.381 0.00 0.00 0.00 2.39
1007 1445 3.397527 AGAGAGAGAGAGAGATGGAGGT 58.602 50.000 0.00 0.00 0.00 3.85
1123 1563 2.349886 GAGCGTGACATCAAGTTCATCC 59.650 50.000 6.75 0.00 36.12 3.51
1149 1589 2.523015 GAGTTTGCCATGATTTCTGCG 58.477 47.619 0.00 0.00 0.00 5.18
1398 1844 4.406456 AGAAGATATCAGAGGATGCGTCT 58.594 43.478 5.77 0.00 34.89 4.18
1404 1850 2.932261 TCAGAGGATGCGTCTAAGCTA 58.068 47.619 5.77 0.00 38.13 3.32
1427 1879 7.011482 GCTAAAAGTAACATACAGTAGCAGCAT 59.989 37.037 0.00 0.00 35.96 3.79
1478 1936 0.108424 GAGCAGACAGAGACGGCAAT 60.108 55.000 0.00 0.00 0.00 3.56
1500 1958 1.615107 CCAAAGAAGACGACGGCGAC 61.615 60.000 22.49 13.05 41.64 5.19
1635 2093 1.298340 CCACGGTATGGGCAAGACA 59.702 57.895 0.00 0.00 45.95 3.41
1725 2207 2.632763 AACTAGAGGGAAGAGCCACT 57.367 50.000 0.00 0.00 38.95 4.00
1761 2243 0.759959 TACTCCGACAACTTGGCCAA 59.240 50.000 19.25 19.25 0.00 4.52
1794 2291 0.877743 GTCTCACCAAGCTTCAAGCC 59.122 55.000 5.53 0.00 43.77 4.35
1798 2295 2.263741 ACCAAGCTTCAAGCCAGCG 61.264 57.895 5.53 0.00 43.77 5.18
1880 2377 6.129179 ACCCCTCCTTCAATATATTTGTGTG 58.871 40.000 0.00 0.00 0.00 3.82
1944 2441 3.428532 TCTAACTAGTGAGGTGACCCAC 58.571 50.000 7.44 13.26 0.00 4.61
1950 2447 1.003839 TGAGGTGACCCACGCATTC 60.004 57.895 0.00 0.00 34.83 2.67
1952 2449 2.033448 GGTGACCCACGCATTCCA 59.967 61.111 0.00 0.00 34.83 3.53
1969 2466 6.122850 CATTCCATGCTCGATTTTCTGTAA 57.877 37.500 0.00 0.00 0.00 2.41
1978 2475 6.425417 TGCTCGATTTTCTGTAATGTGTTGTA 59.575 34.615 0.00 0.00 0.00 2.41
2029 2526 1.737793 GCTCCCACGGTCAATTGTTAG 59.262 52.381 5.13 0.60 0.00 2.34
2035 2532 4.142687 CCCACGGTCAATTGTTAGTTCATC 60.143 45.833 5.13 0.00 0.00 2.92
2043 2540 5.586243 TCAATTGTTAGTTCATCTAGCCTGC 59.414 40.000 5.13 0.00 0.00 4.85
2044 2541 4.826274 TTGTTAGTTCATCTAGCCTGCT 57.174 40.909 0.00 0.00 0.00 4.24
2045 2542 4.826274 TGTTAGTTCATCTAGCCTGCTT 57.174 40.909 0.00 0.00 0.00 3.91
2046 2543 4.759782 TGTTAGTTCATCTAGCCTGCTTC 58.240 43.478 0.00 0.00 0.00 3.86
2047 2544 4.222810 TGTTAGTTCATCTAGCCTGCTTCA 59.777 41.667 0.00 0.00 0.00 3.02
2048 2545 3.988976 AGTTCATCTAGCCTGCTTCAA 57.011 42.857 0.00 0.00 0.00 2.69
2049 2546 4.292186 AGTTCATCTAGCCTGCTTCAAA 57.708 40.909 0.00 0.00 0.00 2.69
2065 2562 7.693951 CCTGCTTCAAACTTCAAAGTATTATCG 59.306 37.037 0.00 0.00 38.57 2.92
2190 2756 4.211374 GTCAAAGGCACACCGATATATGTC 59.789 45.833 0.00 0.00 42.76 3.06
2229 2798 4.222145 TCAGTACTTAGTCCATTGTCCACC 59.778 45.833 0.00 0.00 0.00 4.61
2235 2804 1.275291 AGTCCATTGTCCACCGTACAG 59.725 52.381 0.00 0.00 0.00 2.74
2244 2813 2.029290 GTCCACCGTACAGAAGTCATGT 60.029 50.000 0.00 0.00 34.62 3.21
2254 2823 8.540492 CCGTACAGAAGTCATGTAAAATCATAC 58.460 37.037 0.00 0.00 35.04 2.39
2309 2882 2.804931 GCGCACGCCCATTGTTTC 60.805 61.111 0.30 0.00 34.56 2.78
2310 2883 2.953821 CGCACGCCCATTGTTTCT 59.046 55.556 0.00 0.00 0.00 2.52
2311 2884 1.917782 GCGCACGCCCATTGTTTCTA 61.918 55.000 0.30 0.00 34.56 2.10
2396 2969 7.168219 GTGGGAACTTATATATTGATGGCTCA 58.832 38.462 0.00 0.00 0.00 4.26
2416 2989 9.935241 TGGCTCAGATATAAATCTTGTATTCTC 57.065 33.333 0.00 0.00 40.65 2.87
2417 2990 9.081997 GGCTCAGATATAAATCTTGTATTCTCG 57.918 37.037 0.00 0.00 40.65 4.04
2592 4011 5.888724 TCAGATCCCTATTCATCTACCGATC 59.111 44.000 0.00 0.00 0.00 3.69
2598 4017 7.410991 TCCCTATTCATCTACCGATCTAATCA 58.589 38.462 0.00 0.00 0.00 2.57
2668 4088 5.041951 TGTAATTGATGACTTGCGGAAAC 57.958 39.130 0.00 0.00 0.00 2.78
2686 4106 2.260844 ACCAGGATATTGGCACGATG 57.739 50.000 0.00 0.00 42.18 3.84
2733 4153 1.608025 GGCAGATTTCTGGTGACGACA 60.608 52.381 9.49 0.00 43.94 4.35
2770 4190 1.814394 CAAATACCTGCAGCAGCTCAA 59.186 47.619 17.81 1.83 42.74 3.02
2835 4255 8.682936 ATGAACACTCAAGACTATTGTTCTTT 57.317 30.769 12.53 0.49 44.18 2.52
2869 4289 0.534427 AGACGATGATCTACCGCCGA 60.534 55.000 0.00 0.00 0.00 5.54
2971 4391 1.904287 AAGCGCAGGTAATCCAACAA 58.096 45.000 11.47 0.00 37.06 2.83
2976 4396 3.275143 CGCAGGTAATCCAACAACCATA 58.725 45.455 0.00 0.00 35.64 2.74
3010 4430 0.394938 ATGCGCCGATATGGGTACAA 59.605 50.000 4.18 0.00 38.63 2.41
3035 4455 4.958581 TCTGGAGAGTGATGAGCTATTTGA 59.041 41.667 0.00 0.00 0.00 2.69
3140 4576 0.179073 CCAAGTGGTCGCCCTATCAG 60.179 60.000 0.00 0.00 0.00 2.90
3182 4618 5.041191 AGATGGTTAGCAGAAGGGTTATG 57.959 43.478 0.00 0.00 0.00 1.90
3199 4635 3.134127 GCCCGGGAGACAATGCAC 61.134 66.667 29.31 0.00 0.00 4.57
3203 4639 2.870372 GGGAGACAATGCACGCAC 59.130 61.111 0.00 0.00 0.00 5.34
3224 4660 5.281727 CACTGCACTCGATACTGCTATTAA 58.718 41.667 10.25 0.00 34.29 1.40
3282 4718 2.329267 CCTATGGATGCCAGTGGTAGA 58.671 52.381 11.74 0.00 36.75 2.59
3345 4781 0.463654 AGTTTGTCCTGCGCAAGTCA 60.464 50.000 13.05 6.71 41.68 3.41
3349 4785 1.236616 TGTCCTGCGCAAGTCAATGG 61.237 55.000 13.05 7.50 41.68 3.16
3354 4790 2.976840 GCGCAAGTCAATGGCCGAA 61.977 57.895 0.30 0.00 41.68 4.30
3363 4799 3.049912 GTCAATGGCCGAAAACTTTGTC 58.950 45.455 0.00 0.00 0.00 3.18
3380 4816 3.669251 TGTCACCGTGTTGTATGATCA 57.331 42.857 0.00 0.00 0.00 2.92
3381 4817 3.996480 TGTCACCGTGTTGTATGATCAA 58.004 40.909 0.00 0.00 0.00 2.57
3395 4831 4.860802 ATGATCAACAATCTACCCCACA 57.139 40.909 0.00 0.00 35.24 4.17
3417 4853 0.683828 TACCCAGTAACATCCGCCGA 60.684 55.000 0.00 0.00 0.00 5.54
3430 4866 2.789917 GCCGACTTGCTCTGCATG 59.210 61.111 0.00 4.28 38.76 4.06
3431 4867 2.758089 GCCGACTTGCTCTGCATGG 61.758 63.158 9.60 4.11 38.76 3.66
3444 4880 2.283388 CATGGTGCAAGGCCCAGT 60.283 61.111 0.00 0.00 33.77 4.00
3490 4926 2.549992 CGGTCACTGACAATCTTGGGAA 60.550 50.000 11.34 0.00 33.68 3.97
3495 4931 2.158475 ACTGACAATCTTGGGAAAGGCA 60.158 45.455 0.00 0.00 0.00 4.75
3500 4936 0.609131 ATCTTGGGAAAGGCACACCG 60.609 55.000 0.00 0.00 42.76 4.94
3513 4949 0.826715 CACACCGATCTGTCCTGGAT 59.173 55.000 0.00 0.00 0.00 3.41
3519 4955 2.432146 CCGATCTGTCCTGGATTTCTCA 59.568 50.000 0.00 0.00 0.00 3.27
3525 4961 5.794894 TCTGTCCTGGATTTCTCAAAGTAC 58.205 41.667 0.00 0.00 0.00 2.73
3526 4962 4.906618 TGTCCTGGATTTCTCAAAGTACC 58.093 43.478 0.00 0.00 0.00 3.34
3528 4964 4.938226 GTCCTGGATTTCTCAAAGTACCAG 59.062 45.833 0.00 0.00 38.57 4.00
3571 5007 3.541632 GAAGAGTGTGTTGAACCCTTGA 58.458 45.455 0.00 0.00 0.00 3.02
3609 5045 7.362662 TCAAGTTGATATGCAGAAAACTGTTC 58.637 34.615 12.03 0.00 31.69 3.18
3610 5046 7.229306 TCAAGTTGATATGCAGAAAACTGTTCT 59.771 33.333 12.03 0.00 31.69 3.01
3650 5086 1.670811 CGGGAAAGCTGTTATTGCGAT 59.329 47.619 0.00 0.00 35.28 4.58
3730 5166 4.052159 ACACCGATAGAGATTCTGCAAG 57.948 45.455 0.00 0.00 39.76 4.01
3735 5171 4.056740 CGATAGAGATTCTGCAAGCACAT 58.943 43.478 0.00 0.00 39.76 3.21
3773 5209 5.667539 TGTCTAGTTCATCTCTTTGGGAG 57.332 43.478 0.00 0.00 43.12 4.30
3952 5388 2.017049 AGGTGAAAATATGGTGCGAGC 58.983 47.619 0.00 0.00 0.00 5.03
3970 5406 3.760035 CTACGGCCGACACCAGCT 61.760 66.667 35.90 9.38 0.00 4.24
4019 5455 2.026449 AGGGGTTCATTGAGAGAAGCAG 60.026 50.000 7.32 0.00 43.33 4.24
4028 5464 1.066914 GAGAGAAGCAGCGTGTTCAG 58.933 55.000 0.00 0.00 0.00 3.02
4212 5648 3.449377 GTCTCACTAAGCTAGGCCTTTCT 59.551 47.826 12.58 5.44 0.00 2.52
4298 5734 2.224867 ACCTGAAGCTGGTTGCAACTAT 60.225 45.455 27.64 8.41 45.94 2.12
4321 5757 1.364626 GGGCAAGCTCGTCATCACAG 61.365 60.000 0.00 0.00 0.00 3.66
4338 5775 3.196469 TCACAGAAGGTATGCTGAAGAGG 59.804 47.826 0.00 0.00 36.07 3.69
4342 5779 1.577736 AGGTATGCTGAAGAGGCTGT 58.422 50.000 0.00 0.00 0.00 4.40
4356 5793 0.882042 GGCTGTCACGCCTATCCATG 60.882 60.000 3.69 0.00 46.63 3.66
4455 5895 6.304356 TGCAAATATCTAGATGGCTTTTCG 57.696 37.500 15.79 3.71 0.00 3.46
4477 5917 2.672714 GCATATCGCCGATCAAGTACA 58.327 47.619 1.25 0.00 32.94 2.90
4483 5923 7.570507 GCATATCGCCGATCAAGTACATTAAAA 60.571 37.037 1.25 0.00 32.94 1.52
4486 5926 6.482835 TCGCCGATCAAGTACATTAAAAATG 58.517 36.000 0.00 0.00 0.00 2.32
4512 5952 4.963373 AGGAGATTGCTCTTCATCATGAG 58.037 43.478 0.09 0.00 41.06 2.90
4516 5956 3.986996 TTGCTCTTCATCATGAGGTGA 57.013 42.857 7.33 0.69 42.06 4.02
4548 5988 3.406764 GAAACATGAGTGGACAGAAGCT 58.593 45.455 0.00 0.00 0.00 3.74
4557 5997 2.031333 GTGGACAGAAGCTGCAAAGAAG 60.031 50.000 1.02 0.00 34.37 2.85
4565 6005 0.675633 GCTGCAAAGAAGCTCCCAAA 59.324 50.000 0.00 0.00 37.69 3.28
4669 6126 1.379176 CTCCTCGCCTCTCCACAGA 60.379 63.158 0.00 0.00 0.00 3.41
4685 6142 5.215845 TCCACAGATCACATCCTGGTAATA 58.784 41.667 0.00 0.00 34.85 0.98
4693 6150 8.768397 AGATCACATCCTGGTAATAACACTTTA 58.232 33.333 0.00 0.00 0.00 1.85
4723 6184 0.164647 GCAGCAGTACAAGTTGCGAG 59.835 55.000 1.81 4.37 44.80 5.03
4734 6195 2.185004 AGTTGCGAGTTGCTAATGGT 57.815 45.000 3.50 0.00 46.63 3.55
4738 6199 3.260475 TGCGAGTTGCTAATGGTACAT 57.740 42.857 3.50 0.00 45.33 2.29
4756 6217 4.590850 ACATCATTCTCGTATGCTGCTA 57.409 40.909 0.00 0.00 0.00 3.49
4760 6221 7.154656 ACATCATTCTCGTATGCTGCTAATTA 58.845 34.615 0.00 0.00 0.00 1.40
4777 6238 6.154445 GCTAATTAGTTGATGGCCATTCATG 58.846 40.000 21.84 3.70 0.00 3.07
4801 6262 5.618056 ACAAGTGTGTCATCAACATGATC 57.382 39.130 0.00 0.00 41.26 2.92
4802 6263 5.065235 ACAAGTGTGTCATCAACATGATCA 58.935 37.500 0.00 0.00 41.26 2.92
4803 6264 5.532032 ACAAGTGTGTCATCAACATGATCAA 59.468 36.000 0.00 0.00 41.26 2.57
4804 6265 5.874895 AGTGTGTCATCAACATGATCAAG 57.125 39.130 0.00 0.00 41.26 3.02
4805 6266 5.311265 AGTGTGTCATCAACATGATCAAGT 58.689 37.500 0.00 0.00 41.26 3.16
4806 6267 5.180680 AGTGTGTCATCAACATGATCAAGTG 59.819 40.000 4.02 0.00 41.26 3.16
4807 6268 4.083164 TGTGTCATCAACATGATCAAGTGC 60.083 41.667 4.02 0.00 41.26 4.40
4808 6269 3.125658 TGTCATCAACATGATCAAGTGCG 59.874 43.478 4.02 0.00 41.26 5.34
4809 6270 3.125829 GTCATCAACATGATCAAGTGCGT 59.874 43.478 4.02 0.00 41.26 5.24
4810 6271 3.371898 TCATCAACATGATCAAGTGCGTC 59.628 43.478 4.02 0.00 34.28 5.19
4811 6272 2.765122 TCAACATGATCAAGTGCGTCA 58.235 42.857 4.02 0.00 0.00 4.35
4812 6273 3.137533 TCAACATGATCAAGTGCGTCAA 58.862 40.909 4.02 0.00 0.00 3.18
4815 6276 5.411053 TCAACATGATCAAGTGCGTCAAATA 59.589 36.000 4.02 0.00 0.00 1.40
4834 6312 7.905493 GTCAAATAATTTAGTCCTCTTTGCTCG 59.095 37.037 0.00 0.00 0.00 5.03
4837 6315 0.885879 TTAGTCCTCTTTGCTCGCGA 59.114 50.000 9.26 9.26 0.00 5.87
4926 6409 9.478019 GTTTGTAACAGATCGAAGTTAATGATG 57.522 33.333 9.21 0.00 32.55 3.07
4929 6412 7.817478 TGTAACAGATCGAAGTTAATGATGTGT 59.183 33.333 9.21 8.39 45.22 3.72
4930 6413 6.653273 ACAGATCGAAGTTAATGATGTGTG 57.347 37.500 11.74 1.79 42.74 3.82
4931 6414 6.398095 ACAGATCGAAGTTAATGATGTGTGA 58.602 36.000 11.74 0.00 42.74 3.58
4932 6415 6.873605 ACAGATCGAAGTTAATGATGTGTGAA 59.126 34.615 11.74 0.00 42.74 3.18
5048 6534 5.107824 GGTTATTTCGGTCCTAGTCAACTC 58.892 45.833 0.00 0.00 0.00 3.01
5062 6548 4.686839 GTCAACTCAATTGGCTTCTACC 57.313 45.455 5.42 0.00 40.00 3.18
5075 6565 5.741011 TGGCTTCTACCGTTATTTCTCAAT 58.259 37.500 0.00 0.00 0.00 2.57
5174 6900 2.548057 TGTGCTCTGTTTTCTAAAGCGG 59.452 45.455 0.00 0.00 35.74 5.52
5191 6917 1.296056 CGGGGTTAAGTTCTGCACGG 61.296 60.000 0.00 0.00 0.00 4.94
5193 6919 1.154197 GGGTTAAGTTCTGCACGGTC 58.846 55.000 0.00 0.00 0.00 4.79
5194 6920 1.270678 GGGTTAAGTTCTGCACGGTCT 60.271 52.381 0.00 0.00 0.00 3.85
5195 6921 2.028748 GGGTTAAGTTCTGCACGGTCTA 60.029 50.000 0.00 0.00 0.00 2.59
5200 6935 4.640789 AAGTTCTGCACGGTCTAGATAG 57.359 45.455 0.00 0.00 0.00 2.08
5268 7003 5.240891 ACGATGATGCCGATAATTCTGAAT 58.759 37.500 0.00 0.00 0.00 2.57
5409 7198 4.392921 AATGACAGACAATCTACCCTCG 57.607 45.455 0.00 0.00 0.00 4.63
5516 7305 8.314751 TCTAAAATTGACTAGAGAGGTTGGAAG 58.685 37.037 0.00 0.00 0.00 3.46
5588 7379 5.644977 TGTCTCCACACACTTATAGTCAG 57.355 43.478 0.00 0.00 0.00 3.51
5591 7382 4.023980 CTCCACACACTTATAGTCAGGGA 58.976 47.826 0.00 0.00 0.00 4.20
5593 7384 4.466370 TCCACACACTTATAGTCAGGGAAG 59.534 45.833 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.679355 CACAAGTTTCAGCATTTGCAAAATG 59.321 36.000 17.19 14.86 45.16 2.32
1 2 5.585445 TCACAAGTTTCAGCATTTGCAAAAT 59.415 32.000 17.19 2.38 45.16 1.82
3 4 4.502016 TCACAAGTTTCAGCATTTGCAAA 58.498 34.783 15.44 15.44 45.16 3.68
4 5 4.120792 TCACAAGTTTCAGCATTTGCAA 57.879 36.364 5.20 0.00 45.16 4.08
5 6 3.797451 TCACAAGTTTCAGCATTTGCA 57.203 38.095 5.20 0.00 45.16 4.08
6 7 4.362279 TCTTCACAAGTTTCAGCATTTGC 58.638 39.130 0.00 0.00 42.49 3.68
7 8 9.844790 TTATATCTTCACAAGTTTCAGCATTTG 57.155 29.630 0.00 0.00 0.00 2.32
11 12 9.013229 ACATTTATATCTTCACAAGTTTCAGCA 57.987 29.630 0.00 0.00 0.00 4.41
12 13 9.846248 AACATTTATATCTTCACAAGTTTCAGC 57.154 29.630 0.00 0.00 0.00 4.26
21 22 8.682710 GGCTACCAAAACATTTATATCTTCACA 58.317 33.333 0.00 0.00 0.00 3.58
22 23 7.855904 CGGCTACCAAAACATTTATATCTTCAC 59.144 37.037 0.00 0.00 0.00 3.18
23 24 7.554835 ACGGCTACCAAAACATTTATATCTTCA 59.445 33.333 0.00 0.00 0.00 3.02
24 25 7.855904 CACGGCTACCAAAACATTTATATCTTC 59.144 37.037 0.00 0.00 0.00 2.87
25 26 7.338449 ACACGGCTACCAAAACATTTATATCTT 59.662 33.333 0.00 0.00 0.00 2.40
26 27 6.826741 ACACGGCTACCAAAACATTTATATCT 59.173 34.615 0.00 0.00 0.00 1.98
27 28 6.910433 CACACGGCTACCAAAACATTTATATC 59.090 38.462 0.00 0.00 0.00 1.63
28 29 6.183360 CCACACGGCTACCAAAACATTTATAT 60.183 38.462 0.00 0.00 0.00 0.86
29 30 5.124138 CCACACGGCTACCAAAACATTTATA 59.876 40.000 0.00 0.00 0.00 0.98
30 31 4.082463 CCACACGGCTACCAAAACATTTAT 60.082 41.667 0.00 0.00 0.00 1.40
31 32 3.253677 CCACACGGCTACCAAAACATTTA 59.746 43.478 0.00 0.00 0.00 1.40
32 33 2.035321 CCACACGGCTACCAAAACATTT 59.965 45.455 0.00 0.00 0.00 2.32
33 34 1.611491 CCACACGGCTACCAAAACATT 59.389 47.619 0.00 0.00 0.00 2.71
34 35 1.243902 CCACACGGCTACCAAAACAT 58.756 50.000 0.00 0.00 0.00 2.71
35 36 0.107116 ACCACACGGCTACCAAAACA 60.107 50.000 0.00 0.00 34.57 2.83
36 37 0.309612 CACCACACGGCTACCAAAAC 59.690 55.000 0.00 0.00 34.57 2.43
37 38 0.107116 ACACCACACGGCTACCAAAA 60.107 50.000 0.00 0.00 34.57 2.44
38 39 0.816018 CACACCACACGGCTACCAAA 60.816 55.000 0.00 0.00 34.57 3.28
39 40 1.227704 CACACCACACGGCTACCAA 60.228 57.895 0.00 0.00 34.57 3.67
40 41 2.134933 TCACACCACACGGCTACCA 61.135 57.895 0.00 0.00 34.57 3.25
41 42 1.666872 GTCACACCACACGGCTACC 60.667 63.158 0.00 0.00 34.57 3.18
42 43 0.944311 CTGTCACACCACACGGCTAC 60.944 60.000 0.00 0.00 34.57 3.58
43 44 1.365999 CTGTCACACCACACGGCTA 59.634 57.895 0.00 0.00 34.57 3.93
44 45 1.396607 TACTGTCACACCACACGGCT 61.397 55.000 0.00 0.00 34.57 5.52
45 46 0.944311 CTACTGTCACACCACACGGC 60.944 60.000 0.00 0.00 34.57 5.68
46 47 0.387929 ACTACTGTCACACCACACGG 59.612 55.000 0.00 0.00 38.77 4.94
47 48 1.337071 AGACTACTGTCACACCACACG 59.663 52.381 0.00 0.00 45.20 4.49
48 49 3.568853 AGTAGACTACTGTCACACCACAC 59.431 47.826 14.47 0.00 45.20 3.82
49 50 3.828921 AGTAGACTACTGTCACACCACA 58.171 45.455 14.47 0.00 45.20 4.17
60 61 6.945938 AATCTATGCGTTCAGTAGACTACT 57.054 37.500 9.45 9.45 40.28 2.57
61 62 9.512435 TTTTAATCTATGCGTTCAGTAGACTAC 57.488 33.333 4.32 4.32 0.00 2.73
65 66 9.193133 GCTATTTTAATCTATGCGTTCAGTAGA 57.807 33.333 0.00 0.00 0.00 2.59
66 67 8.436200 GGCTATTTTAATCTATGCGTTCAGTAG 58.564 37.037 0.00 0.00 0.00 2.57
67 68 8.148351 AGGCTATTTTAATCTATGCGTTCAGTA 58.852 33.333 0.00 0.00 0.00 2.74
68 69 6.992715 AGGCTATTTTAATCTATGCGTTCAGT 59.007 34.615 0.00 0.00 0.00 3.41
69 70 7.293745 CAGGCTATTTTAATCTATGCGTTCAG 58.706 38.462 0.00 0.00 0.00 3.02
70 71 6.204688 CCAGGCTATTTTAATCTATGCGTTCA 59.795 38.462 0.00 0.00 0.00 3.18
71 72 6.426937 TCCAGGCTATTTTAATCTATGCGTTC 59.573 38.462 0.00 0.00 0.00 3.95
72 73 6.296026 TCCAGGCTATTTTAATCTATGCGTT 58.704 36.000 0.00 0.00 0.00 4.84
73 74 5.865085 TCCAGGCTATTTTAATCTATGCGT 58.135 37.500 0.00 0.00 0.00 5.24
74 75 6.801539 TTCCAGGCTATTTTAATCTATGCG 57.198 37.500 0.00 0.00 0.00 4.73
78 79 9.297037 GGCTATTTTCCAGGCTATTTTAATCTA 57.703 33.333 0.00 0.00 35.77 1.98
79 80 7.040409 CGGCTATTTTCCAGGCTATTTTAATCT 60.040 37.037 0.00 0.00 36.48 2.40
80 81 7.084486 CGGCTATTTTCCAGGCTATTTTAATC 58.916 38.462 0.00 0.00 36.48 1.75
81 82 6.516693 GCGGCTATTTTCCAGGCTATTTTAAT 60.517 38.462 0.00 0.00 36.48 1.40
82 83 5.221165 GCGGCTATTTTCCAGGCTATTTTAA 60.221 40.000 0.00 0.00 36.48 1.52
83 84 4.277423 GCGGCTATTTTCCAGGCTATTTTA 59.723 41.667 0.00 0.00 36.48 1.52
84 85 3.068165 GCGGCTATTTTCCAGGCTATTTT 59.932 43.478 0.00 0.00 36.48 1.82
85 86 2.623416 GCGGCTATTTTCCAGGCTATTT 59.377 45.455 0.00 0.00 36.48 1.40
86 87 2.230660 GCGGCTATTTTCCAGGCTATT 58.769 47.619 0.00 0.00 36.48 1.73
87 88 1.142870 TGCGGCTATTTTCCAGGCTAT 59.857 47.619 0.00 0.00 36.48 2.97
88 89 0.544223 TGCGGCTATTTTCCAGGCTA 59.456 50.000 0.00 0.00 36.48 3.93
89 90 0.323360 TTGCGGCTATTTTCCAGGCT 60.323 50.000 0.00 0.00 36.48 4.58
90 91 0.746659 ATTGCGGCTATTTTCCAGGC 59.253 50.000 0.00 0.00 35.34 4.85
91 92 3.214328 ACTATTGCGGCTATTTTCCAGG 58.786 45.455 1.62 0.00 0.00 4.45
92 93 4.601019 CAACTATTGCGGCTATTTTCCAG 58.399 43.478 1.62 0.00 0.00 3.86
93 94 4.630894 CAACTATTGCGGCTATTTTCCA 57.369 40.909 1.62 0.00 0.00 3.53
116 117 2.659610 CTCCCGGGCAGCTATAGC 59.340 66.667 18.49 17.33 42.49 2.97
117 118 2.659610 GCTCCCGGGCAGCTATAG 59.340 66.667 27.75 16.02 33.75 1.31
118 119 2.923035 GGCTCCCGGGCAGCTATA 60.923 66.667 31.11 9.77 40.53 1.31
119 120 4.888325 AGGCTCCCGGGCAGCTAT 62.888 66.667 31.11 22.15 43.56 2.97
141 142 2.815722 GCAGTAGCCATAGCGTAGC 58.184 57.895 0.00 0.00 46.32 3.58
152 153 1.090052 AAGGATTTCGCGGCAGTAGC 61.090 55.000 6.13 0.00 41.10 3.58
153 154 0.931005 GAAGGATTTCGCGGCAGTAG 59.069 55.000 6.13 0.00 0.00 2.57
154 155 0.248012 TGAAGGATTTCGCGGCAGTA 59.752 50.000 6.13 0.00 36.04 2.74
155 156 1.003839 TGAAGGATTTCGCGGCAGT 60.004 52.632 6.13 0.00 36.04 4.40
156 157 1.298157 TGTGAAGGATTTCGCGGCAG 61.298 55.000 6.13 0.00 44.83 4.85
157 158 0.886938 TTGTGAAGGATTTCGCGGCA 60.887 50.000 6.13 0.00 44.83 5.69
158 159 0.239879 TTTGTGAAGGATTTCGCGGC 59.760 50.000 6.13 0.00 44.83 6.53
159 160 2.477863 GGATTTGTGAAGGATTTCGCGG 60.478 50.000 6.13 0.00 44.83 6.46
160 161 2.477863 GGGATTTGTGAAGGATTTCGCG 60.478 50.000 0.00 0.00 44.83 5.87
161 162 2.755103 AGGGATTTGTGAAGGATTTCGC 59.245 45.455 0.00 0.00 42.76 4.70
162 163 4.265073 AGAGGGATTTGTGAAGGATTTCG 58.735 43.478 0.00 0.00 36.04 3.46
163 164 7.703058 TTTAGAGGGATTTGTGAAGGATTTC 57.297 36.000 0.00 0.00 0.00 2.17
164 165 7.124750 CCATTTAGAGGGATTTGTGAAGGATTT 59.875 37.037 0.00 0.00 0.00 2.17
165 166 6.608808 CCATTTAGAGGGATTTGTGAAGGATT 59.391 38.462 0.00 0.00 0.00 3.01
166 167 6.131961 CCATTTAGAGGGATTTGTGAAGGAT 58.868 40.000 0.00 0.00 0.00 3.24
167 168 5.509498 CCATTTAGAGGGATTTGTGAAGGA 58.491 41.667 0.00 0.00 0.00 3.36
168 169 4.098501 GCCATTTAGAGGGATTTGTGAAGG 59.901 45.833 0.00 0.00 0.00 3.46
169 170 4.952335 AGCCATTTAGAGGGATTTGTGAAG 59.048 41.667 0.00 0.00 0.00 3.02
170 171 4.934356 AGCCATTTAGAGGGATTTGTGAA 58.066 39.130 0.00 0.00 0.00 3.18
171 172 4.018506 TGAGCCATTTAGAGGGATTTGTGA 60.019 41.667 0.00 0.00 0.00 3.58
172 173 4.272489 TGAGCCATTTAGAGGGATTTGTG 58.728 43.478 0.00 0.00 0.00 3.33
173 174 4.591321 TGAGCCATTTAGAGGGATTTGT 57.409 40.909 0.00 0.00 0.00 2.83
174 175 5.195940 TCTTGAGCCATTTAGAGGGATTTG 58.804 41.667 0.00 0.00 0.00 2.32
175 176 5.456921 TCTTGAGCCATTTAGAGGGATTT 57.543 39.130 0.00 0.00 0.00 2.17
176 177 5.456921 TTCTTGAGCCATTTAGAGGGATT 57.543 39.130 0.00 0.00 0.00 3.01
177 178 5.133322 TGATTCTTGAGCCATTTAGAGGGAT 59.867 40.000 0.00 0.00 0.00 3.85
178 179 4.474651 TGATTCTTGAGCCATTTAGAGGGA 59.525 41.667 0.00 0.00 0.00 4.20
179 180 4.785301 TGATTCTTGAGCCATTTAGAGGG 58.215 43.478 0.00 0.00 0.00 4.30
180 181 4.275443 GCTGATTCTTGAGCCATTTAGAGG 59.725 45.833 0.00 0.00 0.00 3.69
181 182 4.880120 TGCTGATTCTTGAGCCATTTAGAG 59.120 41.667 0.00 0.00 34.04 2.43
182 183 4.847198 TGCTGATTCTTGAGCCATTTAGA 58.153 39.130 0.00 0.00 34.04 2.10
183 184 5.571784 TTGCTGATTCTTGAGCCATTTAG 57.428 39.130 0.00 0.00 34.04 1.85
184 185 5.981088 TTTGCTGATTCTTGAGCCATTTA 57.019 34.783 0.00 0.00 34.04 1.40
185 186 4.877378 TTTGCTGATTCTTGAGCCATTT 57.123 36.364 0.00 0.00 34.04 2.32
186 187 4.562143 GGTTTTGCTGATTCTTGAGCCATT 60.562 41.667 0.00 0.00 34.04 3.16
187 188 3.056322 GGTTTTGCTGATTCTTGAGCCAT 60.056 43.478 0.00 0.00 34.04 4.40
188 189 2.297033 GGTTTTGCTGATTCTTGAGCCA 59.703 45.455 0.00 0.00 34.04 4.75
189 190 2.669391 CGGTTTTGCTGATTCTTGAGCC 60.669 50.000 0.00 0.00 34.04 4.70
190 191 2.030805 ACGGTTTTGCTGATTCTTGAGC 60.031 45.455 0.00 0.00 35.65 4.26
191 192 3.365364 GGACGGTTTTGCTGATTCTTGAG 60.365 47.826 0.00 0.00 0.00 3.02
192 193 2.552315 GGACGGTTTTGCTGATTCTTGA 59.448 45.455 0.00 0.00 0.00 3.02
193 194 2.293122 TGGACGGTTTTGCTGATTCTTG 59.707 45.455 0.00 0.00 0.00 3.02
194 195 2.554032 CTGGACGGTTTTGCTGATTCTT 59.446 45.455 0.00 0.00 0.00 2.52
195 196 2.154462 CTGGACGGTTTTGCTGATTCT 58.846 47.619 0.00 0.00 0.00 2.40
196 197 2.151202 TCTGGACGGTTTTGCTGATTC 58.849 47.619 0.00 0.00 0.00 2.52
197 198 2.270352 TCTGGACGGTTTTGCTGATT 57.730 45.000 0.00 0.00 0.00 2.57
198 199 2.270352 TTCTGGACGGTTTTGCTGAT 57.730 45.000 0.00 0.00 0.00 2.90
199 200 2.045561 TTTCTGGACGGTTTTGCTGA 57.954 45.000 0.00 0.00 0.00 4.26
200 201 2.293122 TGATTTCTGGACGGTTTTGCTG 59.707 45.455 0.00 0.00 0.00 4.41
201 202 2.582052 TGATTTCTGGACGGTTTTGCT 58.418 42.857 0.00 0.00 0.00 3.91
202 203 3.191371 AGATGATTTCTGGACGGTTTTGC 59.809 43.478 0.00 0.00 31.79 3.68
203 204 4.697352 AGAGATGATTTCTGGACGGTTTTG 59.303 41.667 0.00 0.00 33.74 2.44
204 205 4.911390 AGAGATGATTTCTGGACGGTTTT 58.089 39.130 0.00 0.00 33.74 2.43
205 206 4.508662 GAGAGATGATTTCTGGACGGTTT 58.491 43.478 0.00 0.00 33.74 3.27
206 207 3.118592 GGAGAGATGATTTCTGGACGGTT 60.119 47.826 0.00 0.00 33.74 4.44
207 208 2.432510 GGAGAGATGATTTCTGGACGGT 59.567 50.000 0.00 0.00 33.74 4.83
208 209 2.224161 GGGAGAGATGATTTCTGGACGG 60.224 54.545 0.00 0.00 33.74 4.79
209 210 2.432146 TGGGAGAGATGATTTCTGGACG 59.568 50.000 0.00 0.00 33.74 4.79
210 211 4.102210 TGATGGGAGAGATGATTTCTGGAC 59.898 45.833 0.00 0.00 33.74 4.02
211 212 4.301205 TGATGGGAGAGATGATTTCTGGA 58.699 43.478 0.00 0.00 33.74 3.86
212 213 4.347292 TCTGATGGGAGAGATGATTTCTGG 59.653 45.833 0.00 0.00 33.74 3.86
213 214 5.548181 TCTGATGGGAGAGATGATTTCTG 57.452 43.478 0.00 0.00 33.74 3.02
214 215 6.572182 TTTCTGATGGGAGAGATGATTTCT 57.428 37.500 0.00 0.00 37.41 2.52
215 216 7.820578 ATTTTCTGATGGGAGAGATGATTTC 57.179 36.000 0.00 0.00 0.00 2.17
216 217 8.605325 AAATTTTCTGATGGGAGAGATGATTT 57.395 30.769 0.00 0.00 0.00 2.17
217 218 8.605325 AAAATTTTCTGATGGGAGAGATGATT 57.395 30.769 0.00 0.00 0.00 2.57
218 219 8.060075 AGAAAATTTTCTGATGGGAGAGATGAT 58.940 33.333 28.35 2.61 45.27 2.45
219 220 7.408543 AGAAAATTTTCTGATGGGAGAGATGA 58.591 34.615 28.35 0.00 45.27 2.92
220 221 7.642082 AGAAAATTTTCTGATGGGAGAGATG 57.358 36.000 28.35 0.00 45.27 2.90
244 245 2.335052 GGCAATCGCGGCAAATAGCA 62.335 55.000 6.13 0.00 40.77 3.49
245 246 1.658409 GGCAATCGCGGCAAATAGC 60.658 57.895 6.13 0.96 39.92 2.97
246 247 1.008538 GGGCAATCGCGGCAAATAG 60.009 57.895 6.13 0.00 39.92 1.73
247 248 2.829206 CGGGCAATCGCGGCAAATA 61.829 57.895 6.13 0.00 43.76 1.40
248 249 4.191950 CGGGCAATCGCGGCAAAT 62.192 61.111 6.13 0.00 43.76 2.32
256 257 1.835483 GCTGTCATAGCGGGCAATCG 61.835 60.000 0.00 0.00 43.63 3.34
257 258 1.944778 GCTGTCATAGCGGGCAATC 59.055 57.895 0.00 0.00 43.63 2.67
258 259 4.147701 GCTGTCATAGCGGGCAAT 57.852 55.556 0.00 0.00 43.63 3.56
264 265 4.337086 AGCTATAGCGGCTGTCATAGCG 62.337 54.545 25.83 5.73 46.71 4.26
277 278 0.607620 CCTCTCCCAGCAGCTATAGC 59.392 60.000 17.33 17.33 42.49 2.97
278 279 0.607620 GCCTCTCCCAGCAGCTATAG 59.392 60.000 0.00 0.00 0.00 1.31
279 280 0.189574 AGCCTCTCCCAGCAGCTATA 59.810 55.000 0.00 0.00 30.46 1.31
280 281 1.074623 AGCCTCTCCCAGCAGCTAT 60.075 57.895 0.00 0.00 30.46 2.97
281 282 2.062777 CAGCCTCTCCCAGCAGCTA 61.063 63.158 0.00 0.00 31.23 3.32
282 283 3.400928 CAGCCTCTCCCAGCAGCT 61.401 66.667 0.00 0.00 0.00 4.24
284 285 4.486503 GGCAGCCTCTCCCAGCAG 62.487 72.222 3.29 0.00 0.00 4.24
289 290 4.722700 TTTGCGGCAGCCTCTCCC 62.723 66.667 10.54 0.00 44.33 4.30
290 291 1.997928 GATTTTGCGGCAGCCTCTCC 61.998 60.000 10.54 0.00 44.33 3.71
291 292 1.431036 GATTTTGCGGCAGCCTCTC 59.569 57.895 10.54 0.00 44.33 3.20
292 293 2.401766 CGATTTTGCGGCAGCCTCT 61.402 57.895 10.54 0.00 44.33 3.69
293 294 2.100991 CGATTTTGCGGCAGCCTC 59.899 61.111 10.54 0.93 44.33 4.70
294 295 1.805428 AAACGATTTTGCGGCAGCCT 61.805 50.000 10.54 0.00 44.33 4.58
295 296 1.344226 GAAACGATTTTGCGGCAGCC 61.344 55.000 6.32 0.00 44.33 4.85
296 297 0.387239 AGAAACGATTTTGCGGCAGC 60.387 50.000 1.67 0.31 45.41 5.25
297 298 1.606606 GAGAAACGATTTTGCGGCAG 58.393 50.000 1.67 0.00 35.12 4.85
298 299 0.239879 GGAGAAACGATTTTGCGGCA 59.760 50.000 0.00 0.00 35.12 5.69
299 300 0.456142 GGGAGAAACGATTTTGCGGC 60.456 55.000 0.00 0.00 35.12 6.53
300 301 0.179200 CGGGAGAAACGATTTTGCGG 60.179 55.000 0.00 0.00 35.12 5.69
301 302 0.793104 GCGGGAGAAACGATTTTGCG 60.793 55.000 0.00 0.00 37.29 4.85
302 303 0.239879 TGCGGGAGAAACGATTTTGC 59.760 50.000 0.00 0.00 0.00 3.68
303 304 2.697431 TTGCGGGAGAAACGATTTTG 57.303 45.000 0.00 0.00 0.00 2.44
304 305 3.934457 AATTGCGGGAGAAACGATTTT 57.066 38.095 0.00 0.00 0.00 1.82
305 306 3.934457 AAATTGCGGGAGAAACGATTT 57.066 38.095 0.00 0.00 0.00 2.17
306 307 3.934457 AAAATTGCGGGAGAAACGATT 57.066 38.095 0.00 0.00 0.00 3.34
307 308 5.357032 AGATTAAAATTGCGGGAGAAACGAT 59.643 36.000 0.00 0.00 0.00 3.73
308 309 4.698304 AGATTAAAATTGCGGGAGAAACGA 59.302 37.500 0.00 0.00 0.00 3.85
309 310 4.981794 AGATTAAAATTGCGGGAGAAACG 58.018 39.130 0.00 0.00 0.00 3.60
310 311 7.644157 GTCATAGATTAAAATTGCGGGAGAAAC 59.356 37.037 0.00 0.00 0.00 2.78
311 312 7.556275 AGTCATAGATTAAAATTGCGGGAGAAA 59.444 33.333 0.00 0.00 0.00 2.52
312 313 7.012327 CAGTCATAGATTAAAATTGCGGGAGAA 59.988 37.037 0.00 0.00 0.00 2.87
313 314 6.483307 CAGTCATAGATTAAAATTGCGGGAGA 59.517 38.462 0.00 0.00 0.00 3.71
314 315 6.483307 TCAGTCATAGATTAAAATTGCGGGAG 59.517 38.462 0.00 0.00 0.00 4.30
315 316 6.353323 TCAGTCATAGATTAAAATTGCGGGA 58.647 36.000 0.00 0.00 0.00 5.14
316 317 6.618287 TCAGTCATAGATTAAAATTGCGGG 57.382 37.500 0.00 0.00 0.00 6.13
317 318 6.628856 CGTTCAGTCATAGATTAAAATTGCGG 59.371 38.462 0.00 0.00 0.00 5.69
318 319 6.628856 CCGTTCAGTCATAGATTAAAATTGCG 59.371 38.462 0.00 0.00 0.00 4.85
319 320 7.472543 ACCGTTCAGTCATAGATTAAAATTGC 58.527 34.615 0.00 0.00 0.00 3.56
322 323 9.661563 TGTTACCGTTCAGTCATAGATTAAAAT 57.338 29.630 0.00 0.00 0.00 1.82
323 324 9.661563 ATGTTACCGTTCAGTCATAGATTAAAA 57.338 29.630 0.00 0.00 0.00 1.52
324 325 9.661563 AATGTTACCGTTCAGTCATAGATTAAA 57.338 29.630 0.00 0.00 0.00 1.52
325 326 9.093970 CAATGTTACCGTTCAGTCATAGATTAA 57.906 33.333 0.00 0.00 0.00 1.40
326 327 8.255206 ACAATGTTACCGTTCAGTCATAGATTA 58.745 33.333 0.00 0.00 0.00 1.75
327 328 7.103641 ACAATGTTACCGTTCAGTCATAGATT 58.896 34.615 0.00 0.00 0.00 2.40
328 329 6.640518 ACAATGTTACCGTTCAGTCATAGAT 58.359 36.000 0.00 0.00 0.00 1.98
329 330 6.032956 ACAATGTTACCGTTCAGTCATAGA 57.967 37.500 0.00 0.00 0.00 1.98
330 331 6.035005 CAGACAATGTTACCGTTCAGTCATAG 59.965 42.308 0.00 0.00 0.00 2.23
331 332 5.867174 CAGACAATGTTACCGTTCAGTCATA 59.133 40.000 0.00 0.00 0.00 2.15
332 333 4.690748 CAGACAATGTTACCGTTCAGTCAT 59.309 41.667 0.00 0.00 0.00 3.06
333 334 4.055360 CAGACAATGTTACCGTTCAGTCA 58.945 43.478 0.00 0.00 0.00 3.41
334 335 4.056050 ACAGACAATGTTACCGTTCAGTC 58.944 43.478 0.00 0.00 39.96 3.51
346 347 5.348418 CATTGACTCGAAACAGACAATGT 57.652 39.130 14.74 0.00 44.58 2.71
350 351 2.832563 TGCATTGACTCGAAACAGACA 58.167 42.857 0.00 0.00 0.00 3.41
352 353 4.786507 CATTTGCATTGACTCGAAACAGA 58.213 39.130 0.00 0.00 0.00 3.41
389 391 1.338200 CCTGGAAGTCTAGCACACACC 60.338 57.143 0.00 0.00 0.00 4.16
390 392 1.344763 ACCTGGAAGTCTAGCACACAC 59.655 52.381 0.00 0.00 0.00 3.82
393 395 2.325484 TCAACCTGGAAGTCTAGCACA 58.675 47.619 0.00 0.00 0.00 4.57
404 406 6.374333 GCATTCATAGTTTACTTCAACCTGGA 59.626 38.462 0.00 0.00 0.00 3.86
405 407 6.150976 TGCATTCATAGTTTACTTCAACCTGG 59.849 38.462 0.00 0.00 0.00 4.45
408 410 7.145932 AGTGCATTCATAGTTTACTTCAACC 57.854 36.000 0.00 0.00 0.00 3.77
437 439 1.091771 CGCCTCGTTGATCCAGCAAT 61.092 55.000 0.00 0.00 0.00 3.56
438 440 1.741401 CGCCTCGTTGATCCAGCAA 60.741 57.895 0.00 0.00 0.00 3.91
443 445 0.876342 GTCATCCGCCTCGTTGATCC 60.876 60.000 0.00 0.00 0.00 3.36
456 460 1.522569 CCTTGTCTCCGGGTCATCC 59.477 63.158 0.00 0.00 0.00 3.51
465 469 1.869767 CATCATTAGCGCCTTGTCTCC 59.130 52.381 2.29 0.00 0.00 3.71
481 485 5.647225 TGCACACTAATTAACTCATGCATCA 59.353 36.000 0.00 0.00 36.94 3.07
506 510 9.651913 ATTTGAAACAAAAAGTGACACATTAGT 57.348 25.926 8.59 2.35 0.00 2.24
524 528 2.237393 TGTGCCTGCCAATTTGAAAC 57.763 45.000 0.00 0.00 0.00 2.78
540 544 0.094216 CTGTCGATGCGCTCTTTGTG 59.906 55.000 9.73 0.00 0.00 3.33
543 547 2.103042 GGCTGTCGATGCGCTCTTT 61.103 57.895 9.73 0.00 0.00 2.52
544 548 2.510238 GGCTGTCGATGCGCTCTT 60.510 61.111 9.73 0.00 0.00 2.85
547 551 3.997064 GACAGGCTGTCGATGCGCT 62.997 63.158 29.91 0.00 37.67 5.92
564 570 9.646427 GTGTATTAATTAAACCTGGCATTTTGA 57.354 29.630 1.21 0.00 0.00 2.69
573 579 9.341899 GTTCAAGCAGTGTATTAATTAAACCTG 57.658 33.333 1.21 11.12 0.00 4.00
597 607 3.370527 CCCATTTCTGTACCTCATCGGTT 60.371 47.826 0.00 0.00 46.37 4.44
610 620 9.639601 GGTTTTTAAACTTATCTCCCATTTCTG 57.360 33.333 5.43 0.00 38.89 3.02
649 659 2.216046 TCAAGTTCTCAACTGCTGCAG 58.784 47.619 27.02 27.02 41.91 4.41
650 660 2.158914 TCTCAAGTTCTCAACTGCTGCA 60.159 45.455 0.88 0.88 41.91 4.41
656 666 4.348863 ACTGCATCTCAAGTTCTCAACT 57.651 40.909 0.00 0.00 45.46 3.16
664 674 6.820656 CCTAACAAAGATACTGCATCTCAAGT 59.179 38.462 0.00 0.00 43.56 3.16
665 675 6.820656 ACCTAACAAAGATACTGCATCTCAAG 59.179 38.462 0.00 0.00 43.56 3.02
666 676 6.711277 ACCTAACAAAGATACTGCATCTCAA 58.289 36.000 0.00 0.00 43.56 3.02
667 677 6.299805 ACCTAACAAAGATACTGCATCTCA 57.700 37.500 0.00 0.00 43.56 3.27
668 678 7.224949 GGTTACCTAACAAAGATACTGCATCTC 59.775 40.741 0.00 0.00 39.24 2.75
669 679 7.048512 GGTTACCTAACAAAGATACTGCATCT 58.951 38.462 0.00 0.00 40.59 2.90
670 680 6.018994 CGGTTACCTAACAAAGATACTGCATC 60.019 42.308 0.00 0.00 37.92 3.91
671 681 5.815740 CGGTTACCTAACAAAGATACTGCAT 59.184 40.000 0.00 0.00 37.92 3.96
672 682 5.172934 CGGTTACCTAACAAAGATACTGCA 58.827 41.667 0.00 0.00 37.92 4.41
673 683 5.063060 CACGGTTACCTAACAAAGATACTGC 59.937 44.000 0.00 0.00 37.92 4.40
674 684 6.161381 ACACGGTTACCTAACAAAGATACTG 58.839 40.000 0.00 0.00 37.92 2.74
675 685 6.350629 ACACGGTTACCTAACAAAGATACT 57.649 37.500 0.00 0.00 37.92 2.12
676 686 7.315890 AGTACACGGTTACCTAACAAAGATAC 58.684 38.462 0.00 0.00 37.92 2.24
677 687 7.466746 AGTACACGGTTACCTAACAAAGATA 57.533 36.000 0.00 0.00 37.92 1.98
678 688 6.350629 AGTACACGGTTACCTAACAAAGAT 57.649 37.500 0.00 0.00 37.92 2.40
679 689 5.789643 AGTACACGGTTACCTAACAAAGA 57.210 39.130 0.00 0.00 37.92 2.52
680 690 6.035327 GCATAGTACACGGTTACCTAACAAAG 59.965 42.308 0.00 0.00 37.92 2.77
681 691 5.868801 GCATAGTACACGGTTACCTAACAAA 59.131 40.000 0.00 0.00 37.92 2.83
682 692 5.047448 TGCATAGTACACGGTTACCTAACAA 60.047 40.000 0.00 0.00 37.92 2.83
683 693 4.462132 TGCATAGTACACGGTTACCTAACA 59.538 41.667 0.00 0.00 37.92 2.41
684 694 4.997565 TGCATAGTACACGGTTACCTAAC 58.002 43.478 0.00 0.00 35.50 2.34
685 695 4.949238 TCTGCATAGTACACGGTTACCTAA 59.051 41.667 0.00 0.00 0.00 2.69
686 696 4.525996 TCTGCATAGTACACGGTTACCTA 58.474 43.478 0.00 0.00 0.00 3.08
687 697 3.359033 TCTGCATAGTACACGGTTACCT 58.641 45.455 0.00 0.00 0.00 3.08
688 698 3.490419 CCTCTGCATAGTACACGGTTACC 60.490 52.174 0.00 0.00 0.00 2.85
715 725 7.776107 TCCTCAATCTCTATGTAAGTTCACAG 58.224 38.462 0.00 0.00 0.00 3.66
854 864 1.669265 GCATACCGTAGAAACAAGCCC 59.331 52.381 0.00 0.00 0.00 5.19
866 876 2.224426 TGTTCCTTGTTCTGCATACCGT 60.224 45.455 0.00 0.00 0.00 4.83
873 883 4.418392 CATAATGCTGTTCCTTGTTCTGC 58.582 43.478 0.00 0.00 0.00 4.26
1123 1563 3.837213 AATCATGGCAAACTCGTTCTG 57.163 42.857 0.00 0.00 0.00 3.02
1149 1589 2.425143 TTTGCTCATCCTGGATGACC 57.575 50.000 30.63 25.23 43.11 4.02
1398 1844 9.582431 CTGCTACTGTATGTTACTTTTAGCTTA 57.418 33.333 0.00 0.00 34.73 3.09
1404 1850 6.878923 TGATGCTGCTACTGTATGTTACTTTT 59.121 34.615 0.00 0.00 0.00 2.27
1427 1879 2.583441 CGCCCTGGTGAAGAGGTGA 61.583 63.158 0.00 0.00 31.76 4.02
1478 1936 0.599204 GCCGTCGTCTTCTTTGGTCA 60.599 55.000 0.00 0.00 0.00 4.02
1500 1958 1.263484 GATGCTGCTGAATGGTCATCG 59.737 52.381 0.00 0.00 31.85 3.84
1503 1961 0.745486 CGGATGCTGCTGAATGGTCA 60.745 55.000 0.00 0.00 0.00 4.02
1551 2009 3.130516 TCATATCCAGAAGCTCGTTTCGT 59.869 43.478 0.00 0.00 32.33 3.85
1635 2093 0.615331 ACACATGATTGGCGAGGAGT 59.385 50.000 0.00 0.00 0.00 3.85
1725 2207 5.860941 GGAGTATCTCCTTGAGAACATCA 57.139 43.478 8.38 0.00 46.41 3.07
1794 2291 1.400629 CCAATGCACTCTTTGACGCTG 60.401 52.381 0.00 0.00 31.22 5.18
1798 2295 1.541588 GGTCCCAATGCACTCTTTGAC 59.458 52.381 0.00 0.00 31.22 3.18
1858 2355 5.593909 TGCACACAAATATATTGAAGGAGGG 59.406 40.000 0.00 0.00 0.00 4.30
1875 2372 5.963176 ACATGACAGATTTATTGCACACA 57.037 34.783 0.00 0.00 0.00 3.72
1950 2447 5.163723 ACACATTACAGAAAATCGAGCATGG 60.164 40.000 0.00 0.00 0.00 3.66
1952 2449 6.072508 ACAACACATTACAGAAAATCGAGCAT 60.073 34.615 0.00 0.00 0.00 3.79
2029 2526 4.006319 AGTTTGAAGCAGGCTAGATGAAC 58.994 43.478 0.00 0.00 0.00 3.18
2035 2532 4.276926 ACTTTGAAGTTTGAAGCAGGCTAG 59.723 41.667 0.00 0.00 35.21 3.42
2164 2730 0.179032 ATCGGTGTGCCTTTGACACA 60.179 50.000 6.59 0.00 44.67 3.72
2165 2731 1.803334 TATCGGTGTGCCTTTGACAC 58.197 50.000 0.00 0.00 42.57 3.67
2174 2740 4.156664 AGTACGACATATATCGGTGTGC 57.843 45.455 8.47 0.00 46.56 4.57
2190 2756 9.705471 CTAAGTACTGAATAGTCTTGAAGTACG 57.295 37.037 10.87 0.00 42.93 3.67
2229 2798 9.302345 AGTATGATTTTACATGACTTCTGTACG 57.698 33.333 0.00 0.00 0.00 3.67
2235 2804 7.222805 TGAGCGAGTATGATTTTACATGACTTC 59.777 37.037 0.00 0.00 0.00 3.01
2254 2823 5.058149 AGCAAGATGATAGTATGAGCGAG 57.942 43.478 0.00 0.00 0.00 5.03
2256 2825 5.468592 AGAAGCAAGATGATAGTATGAGCG 58.531 41.667 0.00 0.00 0.00 5.03
2309 2882 9.773328 TTCAGAATAACATTTGCGAGAAAATAG 57.227 29.630 0.00 0.00 0.00 1.73
2311 2884 9.474920 TTTTCAGAATAACATTTGCGAGAAAAT 57.525 25.926 0.00 0.00 0.00 1.82
2416 2989 0.163788 GACGCAACATGTGGAGAACG 59.836 55.000 11.32 3.73 30.87 3.95
2417 2990 1.461127 GAGACGCAACATGTGGAGAAC 59.539 52.381 11.32 4.63 30.87 3.01
2523 3919 3.194005 ACAGGACAAACGTGAATCTGT 57.806 42.857 0.00 0.00 37.74 3.41
2525 3921 4.881850 AGAAAACAGGACAAACGTGAATCT 59.118 37.500 0.00 0.00 37.74 2.40
2626 4046 8.964476 ATTACAATGAAGAACCTATGTACCAG 57.036 34.615 0.00 0.00 0.00 4.00
2668 4088 2.260844 ACATCGTGCCAATATCCTGG 57.739 50.000 0.00 0.00 39.71 4.45
2686 4106 0.038618 CCCGCAAAGGCCACTTTTAC 60.039 55.000 5.01 0.00 44.26 2.01
2733 4153 2.892425 GCTACGCGCTGAATGGCT 60.892 61.111 5.73 0.00 35.14 4.75
2770 4190 7.451501 TTGTGTACACATGATCATGAACAAT 57.548 32.000 36.37 19.99 41.52 2.71
2835 4255 5.487433 TCATCGTCTTGGAAAGCTTCATTA 58.513 37.500 0.00 0.00 45.70 1.90
2869 4289 2.439156 GCCAAGCTCCTCCGCATT 60.439 61.111 0.00 0.00 0.00 3.56
2976 4396 2.345876 GCGCATAACTTTGCCCATTTT 58.654 42.857 0.30 0.00 39.52 1.82
3000 4420 5.277250 TCACTCTCCAGATTTGTACCCATA 58.723 41.667 0.00 0.00 0.00 2.74
3001 4421 4.104086 TCACTCTCCAGATTTGTACCCAT 58.896 43.478 0.00 0.00 0.00 4.00
3010 4430 6.099413 TCAAATAGCTCATCACTCTCCAGATT 59.901 38.462 0.00 0.00 0.00 2.40
3035 4455 1.267806 CAAGCACACGCCTCATTCTTT 59.732 47.619 0.00 0.00 39.83 2.52
3140 4576 3.118738 TCTCCTTAACAGGCTCGATTTCC 60.119 47.826 0.00 0.00 40.58 3.13
3182 4618 3.134127 GTGCATTGTCTCCCGGGC 61.134 66.667 18.49 1.66 0.00 6.13
3186 4622 1.672356 AGTGCGTGCATTGTCTCCC 60.672 57.895 0.00 0.00 0.00 4.30
3199 4635 2.282306 CAGTATCGAGTGCAGTGCG 58.718 57.895 11.20 2.74 0.00 5.34
3207 4643 8.942338 TGAAATTGTTAATAGCAGTATCGAGT 57.058 30.769 0.00 0.00 0.00 4.18
3224 4660 5.616866 CGGTCGACAAGCTTATTGAAATTGT 60.617 40.000 18.91 0.00 36.83 2.71
3282 4718 2.035066 GCATGTTTTCACCTCTGTGCTT 59.965 45.455 0.00 0.00 42.46 3.91
3345 4781 2.223947 GGTGACAAAGTTTTCGGCCATT 60.224 45.455 2.24 0.00 0.00 3.16
3349 4785 0.379316 ACGGTGACAAAGTTTTCGGC 59.621 50.000 0.00 0.00 0.00 5.54
3354 4790 4.636648 TCATACAACACGGTGACAAAGTTT 59.363 37.500 16.29 0.00 0.00 2.66
3380 4816 2.574824 GGTAGGTGTGGGGTAGATTGTT 59.425 50.000 0.00 0.00 0.00 2.83
3381 4817 2.193993 GGTAGGTGTGGGGTAGATTGT 58.806 52.381 0.00 0.00 0.00 2.71
3384 4820 0.720232 TGGGTAGGTGTGGGGTAGAT 59.280 55.000 0.00 0.00 0.00 1.98
3395 4831 0.828677 GCGGATGTTACTGGGTAGGT 59.171 55.000 0.00 0.00 0.00 3.08
3417 4853 3.677527 GCACCATGCAGAGCAAGT 58.322 55.556 0.00 0.00 43.62 3.16
3430 4866 2.203480 TTCACTGGGCCTTGCACC 60.203 61.111 4.53 0.00 0.00 5.01
3431 4867 1.529244 ACTTCACTGGGCCTTGCAC 60.529 57.895 4.53 0.00 0.00 4.57
3444 4880 4.947388 ACAAGAGTTAAACCTTGCACTTCA 59.053 37.500 14.51 0.00 42.46 3.02
3490 4926 1.194781 AGGACAGATCGGTGTGCCTT 61.195 55.000 2.27 0.00 39.48 4.35
3495 4931 1.573108 AATCCAGGACAGATCGGTGT 58.427 50.000 2.27 0.00 0.00 4.16
3500 4936 5.495640 ACTTTGAGAAATCCAGGACAGATC 58.504 41.667 0.00 0.00 0.00 2.75
3513 4949 3.141398 CAGCAGCTGGTACTTTGAGAAA 58.859 45.455 19.71 0.00 0.00 2.52
3519 4955 0.671781 CTCGCAGCAGCTGGTACTTT 60.672 55.000 24.13 0.00 39.10 2.66
3525 4961 1.081641 CAAAACTCGCAGCAGCTGG 60.082 57.895 24.13 13.79 39.10 4.85
3526 4962 1.081641 CCAAAACTCGCAGCAGCTG 60.082 57.895 18.93 18.93 39.10 4.24
3528 4964 0.179179 GATCCAAAACTCGCAGCAGC 60.179 55.000 0.00 0.00 37.42 5.25
3571 5007 3.387962 TCAACTTGAGATGGCTATCCCT 58.612 45.455 6.42 0.00 33.64 4.20
3609 5045 1.765314 AGGCATAGGTACCTCAGCAAG 59.235 52.381 29.18 9.82 0.00 4.01
3610 5046 1.879575 AGGCATAGGTACCTCAGCAA 58.120 50.000 29.18 11.51 0.00 3.91
3694 5130 4.545208 TCGGTGTATTTCTCACATCCAA 57.455 40.909 0.00 0.00 37.52 3.53
3730 5166 2.404995 GCAGCTCCAGGACATGTGC 61.405 63.158 9.70 9.70 0.00 4.57
3773 5209 2.555757 ACATCTTGCTTGAGCTTGAACC 59.444 45.455 4.44 0.00 42.66 3.62
3882 5318 2.360165 CTGTGCAAACTCTTGGCTCTTT 59.640 45.455 0.00 0.00 32.76 2.52
3970 5406 3.867600 GCCTTTGAGAGATGACTTGAGCA 60.868 47.826 0.00 0.00 0.00 4.26
4019 5455 2.047179 GGGTCCCTCTGAACACGC 60.047 66.667 0.00 0.00 29.57 5.34
4103 5539 9.300681 AGCCAAGATAGCAGCAATTATTATTTA 57.699 29.630 0.00 0.00 0.00 1.40
4107 5543 5.409520 CGAGCCAAGATAGCAGCAATTATTA 59.590 40.000 0.00 0.00 0.00 0.98
4111 5547 1.945394 CGAGCCAAGATAGCAGCAATT 59.055 47.619 0.00 0.00 0.00 2.32
4212 5648 2.123632 AGGCTCAGCTGAGGGGAA 59.876 61.111 37.86 8.10 42.29 3.97
4234 5670 0.037447 AGGGCAGCAAGGAAGTCTTC 59.963 55.000 3.80 3.80 32.41 2.87
4298 5734 2.244117 GATGACGAGCTTGCCCAGGA 62.244 60.000 0.00 0.00 0.00 3.86
4321 5757 2.093235 ACAGCCTCTTCAGCATACCTTC 60.093 50.000 0.00 0.00 0.00 3.46
4338 5775 0.882042 CCATGGATAGGCGTGACAGC 60.882 60.000 5.56 0.00 0.00 4.40
4342 5779 0.980754 ACCACCATGGATAGGCGTGA 60.981 55.000 21.47 0.00 40.96 4.35
4438 5875 2.703536 TGCCCGAAAAGCCATCTAGATA 59.296 45.455 4.54 0.00 0.00 1.98
4460 5900 7.773864 TTTTTAATGTACTTGATCGGCGATA 57.226 32.000 24.05 7.33 0.00 2.92
4477 5917 8.358582 AGAGCAATCTCCTCAACATTTTTAAT 57.641 30.769 0.00 0.00 40.22 1.40
4483 5923 4.914983 TGAAGAGCAATCTCCTCAACATT 58.085 39.130 0.00 0.00 36.98 2.71
4486 5926 4.511527 TGATGAAGAGCAATCTCCTCAAC 58.488 43.478 0.00 0.00 41.59 3.18
4508 5948 3.961480 TCGTTTCATCACTCACCTCAT 57.039 42.857 0.00 0.00 0.00 2.90
4512 5952 4.213270 TCATGTTTCGTTTCATCACTCACC 59.787 41.667 0.00 0.00 0.00 4.02
4516 5956 4.214119 CCACTCATGTTTCGTTTCATCACT 59.786 41.667 0.00 0.00 0.00 3.41
4548 5988 1.895131 GGATTTGGGAGCTTCTTTGCA 59.105 47.619 0.00 0.00 34.99 4.08
4557 5997 1.749258 GGGACGTGGATTTGGGAGC 60.749 63.158 0.00 0.00 0.00 4.70
4565 6005 1.909302 ACAAGATCTTGGGACGTGGAT 59.091 47.619 33.11 11.28 44.45 3.41
4669 6126 9.920946 AATAAAGTGTTATTACCAGGATGTGAT 57.079 29.630 0.00 0.00 38.01 3.06
4685 6142 8.522830 ACTGCTGCAACATAATAATAAAGTGTT 58.477 29.630 3.02 0.00 33.63 3.32
4693 6150 7.630242 ACTTGTACTGCTGCAACATAATAAT 57.370 32.000 7.88 0.00 0.00 1.28
4696 6155 5.702865 CAACTTGTACTGCTGCAACATAAT 58.297 37.500 7.88 0.00 0.00 1.28
4698 6157 3.058293 GCAACTTGTACTGCTGCAACATA 60.058 43.478 7.88 0.00 35.62 2.29
4699 6158 2.287788 GCAACTTGTACTGCTGCAACAT 60.288 45.455 7.88 0.00 35.62 2.71
4703 6162 0.531753 TCGCAACTTGTACTGCTGCA 60.532 50.000 0.88 0.88 36.38 4.41
4704 6163 0.164647 CTCGCAACTTGTACTGCTGC 59.835 55.000 3.66 0.00 36.38 5.25
4705 6164 1.502231 ACTCGCAACTTGTACTGCTG 58.498 50.000 3.66 0.00 36.38 4.41
4706 6165 1.867233 CAACTCGCAACTTGTACTGCT 59.133 47.619 3.66 0.00 36.38 4.24
4715 6176 2.185004 ACCATTAGCAACTCGCAACT 57.815 45.000 0.00 0.00 46.13 3.16
4723 6184 5.523916 ACGAGAATGATGTACCATTAGCAAC 59.476 40.000 0.00 0.00 36.93 4.17
4734 6195 4.590850 AGCAGCATACGAGAATGATGTA 57.409 40.909 13.73 0.00 43.52 2.29
4738 6199 6.749139 ACTAATTAGCAGCATACGAGAATGA 58.251 36.000 12.54 0.00 0.00 2.57
4756 6217 5.540400 CCATGAATGGCCATCAACTAATT 57.460 39.130 21.08 0.00 41.75 1.40
4781 6242 5.766670 ACTTGATCATGTTGATGACACACTT 59.233 36.000 8.37 0.00 41.52 3.16
4782 6243 5.180680 CACTTGATCATGTTGATGACACACT 59.819 40.000 11.33 0.00 41.52 3.55
4783 6244 5.388111 CACTTGATCATGTTGATGACACAC 58.612 41.667 11.33 0.00 41.52 3.82
4784 6245 4.083164 GCACTTGATCATGTTGATGACACA 60.083 41.667 11.33 0.00 41.52 3.72
4785 6246 4.409570 GCACTTGATCATGTTGATGACAC 58.590 43.478 11.33 0.00 41.52 3.67
4786 6247 3.125658 CGCACTTGATCATGTTGATGACA 59.874 43.478 11.33 0.00 41.52 3.58
4787 6248 3.125829 ACGCACTTGATCATGTTGATGAC 59.874 43.478 11.33 0.00 41.52 3.06
4788 6249 3.337358 ACGCACTTGATCATGTTGATGA 58.663 40.909 11.33 0.00 42.92 2.92
4789 6250 3.125658 TGACGCACTTGATCATGTTGATG 59.874 43.478 11.33 2.59 37.20 3.07
4790 6251 3.337358 TGACGCACTTGATCATGTTGAT 58.663 40.909 11.33 0.54 40.34 2.57
4791 6252 2.765122 TGACGCACTTGATCATGTTGA 58.235 42.857 11.33 0.00 0.00 3.18
4792 6253 3.541071 TTGACGCACTTGATCATGTTG 57.459 42.857 11.33 9.66 0.00 3.33
4793 6254 4.771590 ATTTGACGCACTTGATCATGTT 57.228 36.364 11.33 0.00 0.00 2.71
4794 6255 5.878332 TTATTTGACGCACTTGATCATGT 57.122 34.783 8.37 8.37 0.00 3.21
4795 6256 7.745022 AAATTATTTGACGCACTTGATCATG 57.255 32.000 7.04 7.04 0.00 3.07
4796 6257 8.677300 ACTAAATTATTTGACGCACTTGATCAT 58.323 29.630 0.00 0.00 0.00 2.45
4797 6258 8.039603 ACTAAATTATTTGACGCACTTGATCA 57.960 30.769 0.00 0.00 0.00 2.92
4798 6259 7.640240 GGACTAAATTATTTGACGCACTTGATC 59.360 37.037 0.00 0.00 0.00 2.92
4799 6260 7.336931 AGGACTAAATTATTTGACGCACTTGAT 59.663 33.333 0.00 0.00 0.00 2.57
4800 6261 6.653320 AGGACTAAATTATTTGACGCACTTGA 59.347 34.615 0.00 0.00 0.00 3.02
4801 6262 6.842163 AGGACTAAATTATTTGACGCACTTG 58.158 36.000 0.00 0.00 0.00 3.16
4802 6263 6.879458 AGAGGACTAAATTATTTGACGCACTT 59.121 34.615 0.00 0.00 0.00 3.16
4803 6264 6.407202 AGAGGACTAAATTATTTGACGCACT 58.593 36.000 0.00 0.00 0.00 4.40
4804 6265 6.663944 AGAGGACTAAATTATTTGACGCAC 57.336 37.500 0.00 0.00 0.00 5.34
4805 6266 7.526608 CAAAGAGGACTAAATTATTTGACGCA 58.473 34.615 0.00 0.00 0.00 5.24
4806 6267 6.469275 GCAAAGAGGACTAAATTATTTGACGC 59.531 38.462 0.00 0.00 0.00 5.19
4807 6268 7.752695 AGCAAAGAGGACTAAATTATTTGACG 58.247 34.615 0.00 0.00 0.00 4.35
4808 6269 7.905493 CGAGCAAAGAGGACTAAATTATTTGAC 59.095 37.037 0.00 0.00 0.00 3.18
4809 6270 7.414098 GCGAGCAAAGAGGACTAAATTATTTGA 60.414 37.037 0.00 0.00 0.00 2.69
4810 6271 6.688813 GCGAGCAAAGAGGACTAAATTATTTG 59.311 38.462 0.00 0.00 0.00 2.32
4811 6272 6.456988 CGCGAGCAAAGAGGACTAAATTATTT 60.457 38.462 0.00 0.00 0.00 1.40
4812 6273 5.006746 CGCGAGCAAAGAGGACTAAATTATT 59.993 40.000 0.00 0.00 0.00 1.40
4815 6276 2.673368 CGCGAGCAAAGAGGACTAAATT 59.327 45.455 0.00 0.00 0.00 1.82
4834 6312 1.298859 AAGCCACCAAATCGACTCGC 61.299 55.000 0.00 0.00 0.00 5.03
4837 6315 0.322546 GGGAAGCCACCAAATCGACT 60.323 55.000 0.00 0.00 0.00 4.18
4926 6409 3.234386 GTTTGCTCCGCTTAATTCACAC 58.766 45.455 0.00 0.00 0.00 3.82
4929 6412 2.418692 TCGTTTGCTCCGCTTAATTCA 58.581 42.857 0.00 0.00 0.00 2.57
4930 6413 3.675467 ATCGTTTGCTCCGCTTAATTC 57.325 42.857 0.00 0.00 0.00 2.17
4931 6414 4.434713 AAATCGTTTGCTCCGCTTAATT 57.565 36.364 0.00 0.00 0.00 1.40
4932 6415 4.156008 AGAAAATCGTTTGCTCCGCTTAAT 59.844 37.500 0.00 0.00 0.00 1.40
4970 6454 9.686683 AACTTATTTATTACAGCAGGAAGTCAT 57.313 29.630 0.00 0.00 0.00 3.06
4999 6483 4.370364 ACATGTCCAACAACAAACAGAC 57.630 40.909 0.00 0.00 31.81 3.51
5048 6534 6.093495 TGAGAAATAACGGTAGAAGCCAATTG 59.907 38.462 0.00 0.00 0.00 2.32
5174 6900 1.154197 GACCGTGCAGAACTTAACCC 58.846 55.000 0.00 0.00 0.00 4.11
5191 6917 4.394729 ACAGCTCAGCTACCTATCTAGAC 58.605 47.826 0.00 0.00 36.40 2.59
5193 6919 5.556915 ACTACAGCTCAGCTACCTATCTAG 58.443 45.833 0.00 0.00 36.40 2.43
5194 6920 5.570205 ACTACAGCTCAGCTACCTATCTA 57.430 43.478 0.00 0.00 36.40 1.98
5195 6921 4.447138 ACTACAGCTCAGCTACCTATCT 57.553 45.455 0.00 0.00 36.40 1.98
5200 6935 3.086818 GCTAACTACAGCTCAGCTACC 57.913 52.381 0.00 0.00 36.40 3.18
5239 6974 0.465705 ATCGGCATCATCGTCAAGGT 59.534 50.000 0.00 0.00 0.00 3.50
5268 7003 5.333798 GCTAACTACACGCAAATGTTCAGAA 60.334 40.000 0.00 0.00 33.85 3.02
5315 7050 2.107204 AGCCAAATGTTCAGAGTCCAGT 59.893 45.455 0.00 0.00 0.00 4.00
5409 7198 2.294233 TCAACCAATCAGCACAGAAAGC 59.706 45.455 0.00 0.00 0.00 3.51
5442 7231 9.066892 CCTTAAAAGATTGATCGGATTGGATTA 57.933 33.333 0.00 0.00 0.00 1.75
5499 7288 5.470047 TCAAACTTCCAACCTCTCTAGTC 57.530 43.478 0.00 0.00 0.00 2.59
5516 7305 2.602878 CAGCAATGACAGCCATCAAAC 58.397 47.619 0.00 0.00 33.53 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.