Multiple sequence alignment - TraesCS7D01G005200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G005200 chr7D 100.000 4770 0 0 1 4770 2523429 2518660 0.000000e+00 8809.0
1 TraesCS7D01G005200 chr7D 97.003 1101 33 0 930 2030 3425076 3423976 0.000000e+00 1851.0
2 TraesCS7D01G005200 chr7D 93.976 830 32 1 3959 4770 3423392 3422563 0.000000e+00 1240.0
3 TraesCS7D01G005200 chr7D 89.609 818 76 7 3959 4770 4008930 4008116 0.000000e+00 1031.0
4 TraesCS7D01G005200 chr7D 83.633 1002 156 8 857 1854 3552761 3551764 0.000000e+00 935.0
5 TraesCS7D01G005200 chr7D 83.181 987 157 8 855 1837 2905034 2904053 0.000000e+00 894.0
6 TraesCS7D01G005200 chr7D 93.085 564 23 6 2020 2583 3423926 3423379 0.000000e+00 811.0
7 TraesCS7D01G005200 chr7D 89.182 379 31 7 235 613 418723891 418723523 9.350000e-127 464.0
8 TraesCS7D01G005200 chr7D 80.529 416 71 7 2173 2583 3551274 3550864 1.290000e-80 311.0
9 TraesCS7D01G005200 chr7D 79.567 416 74 10 2173 2583 2903542 2903133 2.170000e-73 287.0
10 TraesCS7D01G005200 chr7D 88.636 220 22 2 19 235 418724153 418723934 1.020000e-66 265.0
11 TraesCS7D01G005200 chr7D 85.385 260 26 5 240 499 2454169 2454416 4.740000e-65 259.0
12 TraesCS7D01G005200 chr7D 78.780 377 75 5 2208 2583 2686915 2686543 1.030000e-61 248.0
13 TraesCS7D01G005200 chr7D 91.617 167 11 2 235 398 2592330 2592164 1.340000e-55 228.0
14 TraesCS7D01G005200 chr7D 97.917 96 2 0 761 856 3425132 3425037 2.950000e-37 167.0
15 TraesCS7D01G005200 chr6B 96.542 1388 44 2 2577 3963 717854490 717855874 0.000000e+00 2294.0
16 TraesCS7D01G005200 chr6B 89.710 379 29 7 235 613 319514406 319514038 4.320000e-130 475.0
17 TraesCS7D01G005200 chr6B 87.634 186 20 2 19 201 319516233 319516048 3.740000e-51 213.0
18 TraesCS7D01G005200 chr6B 97.917 48 0 1 188 235 319514495 319514449 1.100000e-11 82.4
19 TraesCS7D01G005200 chr6B 100.000 28 0 0 726 753 457156941 457156968 9.000000e-03 52.8
20 TraesCS7D01G005200 chr2B 96.539 1387 44 2 2577 3962 199165856 199167239 0.000000e+00 2292.0
21 TraesCS7D01G005200 chr2B 96.602 1383 42 3 2583 3964 528831640 528830262 0.000000e+00 2289.0
22 TraesCS7D01G005200 chr2B 100.000 29 0 0 725 753 75846342 75846370 2.000000e-03 54.7
23 TraesCS7D01G005200 chr5B 96.604 1384 42 3 2577 3958 63280930 63282310 0.000000e+00 2290.0
24 TraesCS7D01G005200 chr5B 96.602 1383 42 3 2577 3957 362954418 362955797 0.000000e+00 2289.0
25 TraesCS7D01G005200 chr5B 100.000 29 0 0 725 753 376347549 376347521 2.000000e-03 54.7
26 TraesCS7D01G005200 chr2A 96.602 1383 42 3 2577 3957 771617138 771618517 0.000000e+00 2289.0
27 TraesCS7D01G005200 chr2A 96.465 1386 44 3 2577 3961 55882686 55884067 0.000000e+00 2283.0
28 TraesCS7D01G005200 chr2A 100.000 29 0 0 725 753 37084394 37084422 2.000000e-03 54.7
29 TraesCS7D01G005200 chr2A 100.000 28 0 0 725 752 199031801 199031828 9.000000e-03 52.8
30 TraesCS7D01G005200 chr4A 96.587 1377 43 2 2583 3958 473284164 473282791 0.000000e+00 2279.0
31 TraesCS7D01G005200 chr4A 90.640 812 73 2 3959 4770 742159341 742158533 0.000000e+00 1075.0
32 TraesCS7D01G005200 chr4A 90.361 830 62 3 3959 4770 740149263 740148434 0.000000e+00 1074.0
33 TraesCS7D01G005200 chr4A 86.105 986 123 11 855 1831 740442688 740441708 0.000000e+00 1050.0
34 TraesCS7D01G005200 chr4A 89.759 830 67 3 3959 4770 739607347 739608176 0.000000e+00 1046.0
35 TraesCS7D01G005200 chr4A 88.409 811 90 3 3959 4767 741422357 741423165 0.000000e+00 974.0
36 TraesCS7D01G005200 chr4A 86.190 811 108 4 3959 4769 733806405 733807211 0.000000e+00 874.0
37 TraesCS7D01G005200 chr4A 83.694 877 138 4 981 1854 741420769 741421643 0.000000e+00 822.0
38 TraesCS7D01G005200 chr4A 81.284 732 93 27 1854 2583 741421681 741422370 1.940000e-153 553.0
39 TraesCS7D01G005200 chr4A 90.476 336 29 3 336 668 740091896 740091561 1.580000e-119 440.0
40 TraesCS7D01G005200 chr4A 82.524 412 65 6 2174 2583 739606954 739607360 5.870000e-94 355.0
41 TraesCS7D01G005200 chr4A 81.265 411 72 5 2174 2583 742159734 742159328 1.280000e-85 327.0
42 TraesCS7D01G005200 chr4A 80.964 394 70 4 2191 2583 742021161 742021550 1.670000e-79 307.0
43 TraesCS7D01G005200 chr4A 88.205 195 16 4 857 1044 740607096 740606902 4.800000e-55 226.0
44 TraesCS7D01G005200 chr4A 83.158 190 25 5 297 483 740276208 740276393 2.950000e-37 167.0
45 TraesCS7D01G005200 chr4A 83.158 190 25 5 297 483 740310841 740311026 2.950000e-37 167.0
46 TraesCS7D01G005200 chr4A 83.158 190 25 5 297 483 740356730 740356915 2.950000e-37 167.0
47 TraesCS7D01G005200 chr4A 97.143 35 1 0 196 230 740946024 740946058 5.160000e-05 60.2
48 TraesCS7D01G005200 chr4A 100.000 32 0 0 201 232 742002916 742002947 5.160000e-05 60.2
49 TraesCS7D01G005200 chr7B 96.457 1383 44 3 2577 3957 99219750 99221129 0.000000e+00 2278.0
50 TraesCS7D01G005200 chr7A 87.936 1003 109 6 855 1854 2806021 2805028 0.000000e+00 1171.0
51 TraesCS7D01G005200 chr7A 89.053 813 84 4 3959 4770 3154304 3153496 0.000000e+00 1003.0
52 TraesCS7D01G005200 chr7A 88.753 818 83 7 3959 4770 3842406 3841592 0.000000e+00 992.0
53 TraesCS7D01G005200 chr7A 83.300 994 145 14 873 1854 2688527 2687543 0.000000e+00 896.0
54 TraesCS7D01G005200 chr7A 83.372 860 137 6 981 1837 3156012 3155156 0.000000e+00 791.0
55 TraesCS7D01G005200 chr7A 82.955 880 144 6 978 1854 3844174 3843298 0.000000e+00 789.0
56 TraesCS7D01G005200 chr7A 87.897 504 41 7 235 727 3158855 3158361 4.140000e-160 575.0
57 TraesCS7D01G005200 chr7A 79.856 417 72 9 2173 2583 3154701 3154291 1.300000e-75 294.0
58 TraesCS7D01G005200 chr7A 87.815 238 21 5 1 235 3159131 3158899 6.080000e-69 272.0
59 TraesCS7D01G005200 chr7A 80.628 191 24 9 235 424 2393366 2393544 8.330000e-28 135.0
60 TraesCS7D01G005200 chr1D 86.700 812 105 2 3959 4770 464795842 464796650 0.000000e+00 898.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G005200 chr7D 2518660 2523429 4769 True 8809.00 8809 100.000000 1 4770 1 chr7D.!!$R1 4769
1 TraesCS7D01G005200 chr7D 4008116 4008930 814 True 1031.00 1031 89.609000 3959 4770 1 chr7D.!!$R4 811
2 TraesCS7D01G005200 chr7D 3422563 3425132 2569 True 1017.25 1851 95.495250 761 4770 4 chr7D.!!$R6 4009
3 TraesCS7D01G005200 chr7D 3550864 3552761 1897 True 623.00 935 82.081000 857 2583 2 chr7D.!!$R7 1726
4 TraesCS7D01G005200 chr7D 2903133 2905034 1901 True 590.50 894 81.374000 855 2583 2 chr7D.!!$R5 1728
5 TraesCS7D01G005200 chr7D 418723523 418724153 630 True 364.50 464 88.909000 19 613 2 chr7D.!!$R8 594
6 TraesCS7D01G005200 chr6B 717854490 717855874 1384 False 2294.00 2294 96.542000 2577 3963 1 chr6B.!!$F2 1386
7 TraesCS7D01G005200 chr6B 319514038 319516233 2195 True 256.80 475 91.753667 19 613 3 chr6B.!!$R1 594
8 TraesCS7D01G005200 chr2B 199165856 199167239 1383 False 2292.00 2292 96.539000 2577 3962 1 chr2B.!!$F2 1385
9 TraesCS7D01G005200 chr2B 528830262 528831640 1378 True 2289.00 2289 96.602000 2583 3964 1 chr2B.!!$R1 1381
10 TraesCS7D01G005200 chr5B 63280930 63282310 1380 False 2290.00 2290 96.604000 2577 3958 1 chr5B.!!$F1 1381
11 TraesCS7D01G005200 chr5B 362954418 362955797 1379 False 2289.00 2289 96.602000 2577 3957 1 chr5B.!!$F2 1380
12 TraesCS7D01G005200 chr2A 771617138 771618517 1379 False 2289.00 2289 96.602000 2577 3957 1 chr2A.!!$F4 1380
13 TraesCS7D01G005200 chr2A 55882686 55884067 1381 False 2283.00 2283 96.465000 2577 3961 1 chr2A.!!$F2 1384
14 TraesCS7D01G005200 chr4A 473282791 473284164 1373 True 2279.00 2279 96.587000 2583 3958 1 chr4A.!!$R1 1375
15 TraesCS7D01G005200 chr4A 740148434 740149263 829 True 1074.00 1074 90.361000 3959 4770 1 chr4A.!!$R3 811
16 TraesCS7D01G005200 chr4A 740441708 740442688 980 True 1050.00 1050 86.105000 855 1831 1 chr4A.!!$R4 976
17 TraesCS7D01G005200 chr4A 733806405 733807211 806 False 874.00 874 86.190000 3959 4769 1 chr4A.!!$F1 810
18 TraesCS7D01G005200 chr4A 741420769 741423165 2396 False 783.00 974 84.462333 981 4767 3 chr4A.!!$F9 3786
19 TraesCS7D01G005200 chr4A 742158533 742159734 1201 True 701.00 1075 85.952500 2174 4770 2 chr4A.!!$R6 2596
20 TraesCS7D01G005200 chr4A 739606954 739608176 1222 False 700.50 1046 86.141500 2174 4770 2 chr4A.!!$F8 2596
21 TraesCS7D01G005200 chr7B 99219750 99221129 1379 False 2278.00 2278 96.457000 2577 3957 1 chr7B.!!$F1 1380
22 TraesCS7D01G005200 chr7A 2805028 2806021 993 True 1171.00 1171 87.936000 855 1854 1 chr7A.!!$R2 999
23 TraesCS7D01G005200 chr7A 2687543 2688527 984 True 896.00 896 83.300000 873 1854 1 chr7A.!!$R1 981
24 TraesCS7D01G005200 chr7A 3841592 3844174 2582 True 890.50 992 85.854000 978 4770 2 chr7A.!!$R4 3792
25 TraesCS7D01G005200 chr7A 3153496 3159131 5635 True 587.00 1003 85.598600 1 4770 5 chr7A.!!$R3 4769
26 TraesCS7D01G005200 chr1D 464795842 464796650 808 False 898.00 898 86.700000 3959 4770 1 chr1D.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 893 0.038744 CTGCCCACACTCATTCCCTT 59.961 55.0 0.0 0.0 0.00 3.95 F
1489 3698 0.945099 TCGCCTATCAGCTCTGTACG 59.055 55.0 0.0 0.0 0.00 3.67 F
2218 4703 2.106511 GGCTGGCTTCCATACATCCTAA 59.893 50.0 0.0 0.0 30.82 2.69 F
2966 5679 0.541863 CCGAGAACAATACCCAGCCT 59.458 55.0 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 4607 0.179100 TGCATGAGAGACTTAGGCGC 60.179 55.000 0.00 0.00 29.57 6.53 R
2966 5679 0.938008 TCGCGTGCAATGTTGTGTAA 59.062 45.000 5.77 0.00 0.00 2.41 R
3718 6551 1.380246 GCTGCCATCCATGTTGGGA 60.380 57.895 12.46 9.34 42.21 4.37 R
4673 7818 1.849039 AGCTCAAGGATACCCATGCTT 59.151 47.619 0.00 0.00 42.97 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 101 1.933181 CGAAGCTGAATATTCGTGGCA 59.067 47.619 21.37 3.11 42.47 4.92
101 103 3.605461 CGAAGCTGAATATTCGTGGCATG 60.605 47.826 21.37 0.00 42.47 4.06
103 105 4.071961 AGCTGAATATTCGTGGCATGTA 57.928 40.909 21.37 0.00 0.00 2.29
125 127 8.251750 TGTAGTTAAGTGCACACTGAATATTC 57.748 34.615 21.04 8.60 41.58 1.75
232 242 2.643551 ACAGAAACTGTGGACCACTTG 58.356 47.619 24.81 18.76 43.63 3.16
244 298 1.742831 GACCACTTGTTGCACACTGAA 59.257 47.619 0.00 0.00 0.00 3.02
294 350 8.888716 GTTCTAATGGTTTGTTTGGTTCAATTT 58.111 29.630 0.00 0.00 0.00 1.82
304 360 8.422973 TTGTTTGGTTCAATTTCTGAAGATTG 57.577 30.769 14.02 14.02 44.83 2.67
308 364 5.166398 GGTTCAATTTCTGAAGATTGCTGG 58.834 41.667 14.79 0.73 44.83 4.85
313 369 7.341030 TCAATTTCTGAAGATTGCTGGAGATA 58.659 34.615 14.79 0.00 34.15 1.98
316 372 9.857656 AATTTCTGAAGATTGCTGGAGATATTA 57.142 29.630 0.00 0.00 0.00 0.98
367 423 8.871629 TGCTTTATTTTGGACTATTAGGAACA 57.128 30.769 0.00 0.00 0.00 3.18
416 477 2.348411 ACGGTGGATTGGATTGGATC 57.652 50.000 0.00 0.00 0.00 3.36
435 496 4.641645 TCAGGTGTTGCTGCGGGG 62.642 66.667 0.00 0.00 0.00 5.73
445 506 3.578456 CTGCGGGGTGTAGCAAAG 58.422 61.111 0.00 0.00 43.31 2.77
453 514 1.160137 GGTGTAGCAAAGACAGGCTG 58.840 55.000 14.16 14.16 41.25 4.85
482 543 2.980246 TGGACTCTGTCTCCTGAAGA 57.020 50.000 0.00 0.00 32.47 2.87
484 545 4.592997 TGGACTCTGTCTCCTGAAGATA 57.407 45.455 0.00 0.00 36.11 1.98
485 546 4.935578 TGGACTCTGTCTCCTGAAGATAA 58.064 43.478 0.00 0.00 36.11 1.75
487 548 5.362143 TGGACTCTGTCTCCTGAAGATAATG 59.638 44.000 0.00 0.00 36.11 1.90
490 551 7.364232 GGACTCTGTCTCCTGAAGATAATGAAA 60.364 40.741 0.00 0.00 36.11 2.69
499 560 6.891361 TCCTGAAGATAATGAAATGCTTCCAA 59.109 34.615 0.00 0.00 35.34 3.53
502 563 7.894708 TGAAGATAATGAAATGCTTCCAACAA 58.105 30.769 0.00 0.00 35.34 2.83
528 592 3.254892 CTCCTCTCGGTACTTTTGCTTC 58.745 50.000 0.00 0.00 0.00 3.86
565 629 8.186163 TGAGTTTATTCTCATGCATGTCAATTC 58.814 33.333 25.43 16.77 39.20 2.17
567 631 4.563337 ATTCTCATGCATGTCAATTCGG 57.437 40.909 25.43 7.67 0.00 4.30
573 637 1.809207 CATGTCAATTCGGTGGGCC 59.191 57.895 0.00 0.00 0.00 5.80
595 659 1.153269 TGCCGTTGCAGAGTTCACA 60.153 52.632 0.00 0.00 44.23 3.58
604 668 5.560760 CGTTGCAGAGTTCACAATGTAATGT 60.561 40.000 0.00 0.00 0.00 2.71
605 669 6.347321 CGTTGCAGAGTTCACAATGTAATGTA 60.347 38.462 0.00 0.00 30.84 2.29
606 670 6.480524 TGCAGAGTTCACAATGTAATGTAC 57.519 37.500 0.00 0.00 30.84 2.90
612 676 9.944376 AGAGTTCACAATGTAATGTACTATGTT 57.056 29.630 0.00 0.00 30.84 2.71
643 707 4.042809 AGAATGTATGTTTGGTCCTGGTCA 59.957 41.667 0.00 0.00 0.00 4.02
684 748 7.315142 TGAATTTCAGAGAACATTTATGTGGC 58.685 34.615 0.00 0.00 41.61 5.01
685 749 5.643379 TTTCAGAGAACATTTATGTGGCC 57.357 39.130 0.00 0.00 41.61 5.36
689 754 4.019174 AGAGAACATTTATGTGGCCCTTG 58.981 43.478 0.00 0.00 41.61 3.61
702 767 2.290896 TGGCCCTTGATTCAGTTACAGG 60.291 50.000 0.00 0.00 0.00 4.00
724 789 8.600668 ACAGGATCATATATCTGTATGTTGCTT 58.399 33.333 3.58 0.00 38.52 3.91
733 798 5.593679 TCTGTATGTTGCTTACTACTCCC 57.406 43.478 0.00 0.00 0.00 4.30
734 799 4.404715 TCTGTATGTTGCTTACTACTCCCC 59.595 45.833 0.00 0.00 0.00 4.81
735 800 3.453353 TGTATGTTGCTTACTACTCCCCC 59.547 47.826 0.00 0.00 0.00 5.40
753 818 4.911514 CCCCCGTTCCTAAATATTTGTG 57.088 45.455 11.05 3.85 0.00 3.33
754 819 3.634910 CCCCCGTTCCTAAATATTTGTGG 59.365 47.826 11.05 12.18 0.00 4.17
756 821 3.067601 CCCGTTCCTAAATATTTGTGGGC 59.932 47.826 11.05 8.47 0.00 5.36
757 822 3.697045 CCGTTCCTAAATATTTGTGGGCA 59.303 43.478 11.05 0.00 0.00 5.36
758 823 4.439563 CCGTTCCTAAATATTTGTGGGCAC 60.440 45.833 11.05 9.34 0.00 5.01
782 847 5.333581 CCTGTACTATCCTATCCATCCACA 58.666 45.833 0.00 0.00 0.00 4.17
816 881 2.753043 CATCCACAGGCTGCCCAC 60.753 66.667 16.57 0.00 0.00 4.61
817 882 3.259314 ATCCACAGGCTGCCCACA 61.259 61.111 16.57 0.00 0.00 4.17
819 884 4.275508 CCACAGGCTGCCCACACT 62.276 66.667 16.57 0.00 0.00 3.55
822 887 2.353958 CAGGCTGCCCACACTCAT 59.646 61.111 16.57 0.00 0.00 2.90
823 888 1.303888 CAGGCTGCCCACACTCATT 60.304 57.895 16.57 0.00 0.00 2.57
825 890 2.048603 GGCTGCCCACACTCATTCC 61.049 63.158 7.66 0.00 0.00 3.01
826 891 2.048603 GCTGCCCACACTCATTCCC 61.049 63.158 0.00 0.00 0.00 3.97
827 892 1.687612 CTGCCCACACTCATTCCCT 59.312 57.895 0.00 0.00 0.00 4.20
828 893 0.038744 CTGCCCACACTCATTCCCTT 59.961 55.000 0.00 0.00 0.00 3.95
829 894 1.281867 CTGCCCACACTCATTCCCTTA 59.718 52.381 0.00 0.00 0.00 2.69
830 895 1.922447 TGCCCACACTCATTCCCTTAT 59.078 47.619 0.00 0.00 0.00 1.73
832 897 2.092429 GCCCACACTCATTCCCTTATCA 60.092 50.000 0.00 0.00 0.00 2.15
833 898 3.545703 CCCACACTCATTCCCTTATCAC 58.454 50.000 0.00 0.00 0.00 3.06
834 899 3.054434 CCCACACTCATTCCCTTATCACA 60.054 47.826 0.00 0.00 0.00 3.58
835 900 4.567537 CCCACACTCATTCCCTTATCACAA 60.568 45.833 0.00 0.00 0.00 3.33
838 903 6.349611 CCACACTCATTCCCTTATCACAAAAG 60.350 42.308 0.00 0.00 0.00 2.27
839 904 5.711976 ACACTCATTCCCTTATCACAAAAGG 59.288 40.000 0.00 0.00 42.73 3.11
841 906 6.434028 CACTCATTCCCTTATCACAAAAGGAA 59.566 38.462 3.44 0.00 45.41 3.36
842 907 7.010160 ACTCATTCCCTTATCACAAAAGGAAA 58.990 34.615 3.44 0.00 45.41 3.13
843 908 7.177392 ACTCATTCCCTTATCACAAAAGGAAAG 59.823 37.037 3.44 0.00 45.41 2.62
844 909 6.437162 TCATTCCCTTATCACAAAAGGAAAGG 59.563 38.462 3.44 0.00 45.41 3.11
845 910 5.592587 TCCCTTATCACAAAAGGAAAGGA 57.407 39.130 3.44 0.00 45.41 3.36
846 911 5.959512 TCCCTTATCACAAAAGGAAAGGAA 58.040 37.500 3.44 0.00 45.41 3.36
847 912 6.010219 TCCCTTATCACAAAAGGAAAGGAAG 58.990 40.000 3.44 0.00 45.41 3.46
848 913 5.336770 CCCTTATCACAAAAGGAAAGGAAGC 60.337 44.000 3.44 0.00 45.41 3.86
849 914 5.243730 CCTTATCACAAAAGGAAAGGAAGCA 59.756 40.000 0.00 0.00 45.41 3.91
852 917 6.916360 ATCACAAAAGGAAAGGAAGCATTA 57.084 33.333 0.00 0.00 0.00 1.90
853 918 6.916360 TCACAAAAGGAAAGGAAGCATTAT 57.084 33.333 0.00 0.00 0.00 1.28
862 3065 5.127682 GGAAAGGAAGCATTATTGTCCACAT 59.872 40.000 0.00 0.00 32.19 3.21
900 3103 5.897250 TGGCTTATCCATCTGTAGTCTGTAA 59.103 40.000 0.00 0.00 40.72 2.41
1209 3418 1.071471 CTGGGCAAACGAGGTCAGT 59.929 57.895 0.00 0.00 0.00 3.41
1454 3663 1.005450 GGTTCCTAATCCAACTGGCCA 59.995 52.381 4.71 4.71 34.44 5.36
1489 3698 0.945099 TCGCCTATCAGCTCTGTACG 59.055 55.000 0.00 0.00 0.00 3.67
1602 3811 5.703130 ACTCAAGATACTCTCTGTTTTTGGC 59.297 40.000 0.00 0.00 33.29 4.52
1606 3815 5.869579 AGATACTCTCTGTTTTTGGCTTCA 58.130 37.500 0.00 0.00 31.12 3.02
1774 3984 2.108075 TGCTTGGAGTTGGATGAAAGGA 59.892 45.455 0.00 0.00 0.00 3.36
1907 4254 2.561478 TACACCAGAGAAGGGTTTGC 57.439 50.000 0.00 0.00 36.19 3.68
2130 4597 6.206438 TCGATGATGAAATGAAACCAACTTGA 59.794 34.615 0.00 0.00 0.00 3.02
2131 4598 7.031372 CGATGATGAAATGAAACCAACTTGAT 58.969 34.615 0.00 0.00 0.00 2.57
2132 4599 8.183536 CGATGATGAAATGAAACCAACTTGATA 58.816 33.333 0.00 0.00 0.00 2.15
2133 4600 9.859427 GATGATGAAATGAAACCAACTTGATAA 57.141 29.630 0.00 0.00 0.00 1.75
2141 4608 9.435688 AATGAAACCAACTTGATAAAAATAGGC 57.564 29.630 0.00 0.00 0.00 3.93
2142 4609 7.087639 TGAAACCAACTTGATAAAAATAGGCG 58.912 34.615 0.00 0.00 0.00 5.52
2143 4610 4.993905 ACCAACTTGATAAAAATAGGCGC 58.006 39.130 0.00 0.00 0.00 6.53
2144 4611 4.142249 ACCAACTTGATAAAAATAGGCGCC 60.142 41.667 21.89 21.89 0.00 6.53
2145 4612 4.097892 CCAACTTGATAAAAATAGGCGCCT 59.902 41.667 34.85 34.85 0.00 5.52
2218 4703 2.106511 GGCTGGCTTCCATACATCCTAA 59.893 50.000 0.00 0.00 30.82 2.69
2339 4824 7.299787 CATCGTTATTGATGACATATGGGAG 57.700 40.000 7.80 0.00 46.98 4.30
2342 4827 5.346011 CGTTATTGATGACATATGGGAGACG 59.654 44.000 7.80 1.71 0.00 4.18
2460 4945 6.454795 ACCGGTGAAGTATACGAGTTAAAAA 58.545 36.000 6.12 0.00 0.00 1.94
2486 4971 8.912988 ACACTTTCTCAAGATTTAACCAATGAA 58.087 29.630 0.00 0.00 33.72 2.57
2794 5439 6.208599 GCAATAAGTATATAGGCCAAAAGGCA 59.791 38.462 5.01 0.00 45.61 4.75
2816 5461 5.294552 GCAGTGTCTCAGGTATATTGGAAAC 59.705 44.000 0.00 0.00 0.00 2.78
2819 5464 6.901300 AGTGTCTCAGGTATATTGGAAACCTA 59.099 38.462 0.00 0.00 41.75 3.08
2871 5516 3.304659 GCGGCAAAGAAACATCTCTTTCA 60.305 43.478 0.00 0.00 42.47 2.69
2966 5679 0.541863 CCGAGAACAATACCCAGCCT 59.458 55.000 0.00 0.00 0.00 4.58
2969 5682 3.195661 CGAGAACAATACCCAGCCTTAC 58.804 50.000 0.00 0.00 0.00 2.34
3157 5873 3.028850 CTGGAACCTTACTACATCGGGA 58.971 50.000 0.00 0.00 0.00 5.14
3159 5875 4.806892 TGGAACCTTACTACATCGGGATA 58.193 43.478 0.00 0.00 0.00 2.59
3214 5930 1.825474 CATTCTGAGGTACCGGTGAGT 59.175 52.381 19.93 0.00 0.00 3.41
3313 6099 2.844122 AACAAAAGACAACCTCGCAC 57.156 45.000 0.00 0.00 0.00 5.34
3357 6190 9.174166 AGTAAGAAGTGTTGTTTTTGTACTCAT 57.826 29.630 0.00 0.00 0.00 2.90
3416 6249 4.959446 GCGTTCTACGTGGTCAGT 57.041 55.556 0.00 0.00 44.73 3.41
3444 6277 7.424803 TCCAAATAGCATCAAATTTGTATCCG 58.575 34.615 17.47 4.77 40.08 4.18
3449 6282 3.243839 GCATCAAATTTGTATCCGCCCAT 60.244 43.478 17.47 0.00 0.00 4.00
3688 6521 0.598158 GTTCAAGGCGGTGTGTACGA 60.598 55.000 0.00 0.00 0.00 3.43
3737 6570 2.777972 CCCAACATGGATGGCAGCG 61.778 63.158 12.96 0.00 40.96 5.18
3767 6600 1.339151 GCTCGGTCCACCATCTCTTTT 60.339 52.381 0.00 0.00 35.14 2.27
3768 6601 2.093658 GCTCGGTCCACCATCTCTTTTA 60.094 50.000 0.00 0.00 35.14 1.52
3792 6625 4.702612 ACATAGGCATAGTCTCGGTCTATG 59.297 45.833 17.41 17.41 44.18 2.23
3800 6633 4.986054 AGTCTCGGTCTATGGACTCTAT 57.014 45.455 9.27 0.00 41.82 1.98
3832 6665 6.955963 CGAATTGTCGGTCTTTTATCTTTCTG 59.044 38.462 0.00 0.00 43.81 3.02
3833 6666 7.360101 CGAATTGTCGGTCTTTTATCTTTCTGT 60.360 37.037 0.00 0.00 43.81 3.41
3922 6755 7.578310 ATGCTTTGTATCACTTTGATGCTAT 57.422 32.000 5.94 0.00 39.71 2.97
3952 6896 8.389779 TGAGATAATAAAAGCGCCATTTATCA 57.610 30.769 21.92 15.82 33.09 2.15
3978 7099 5.708736 ATAATGTGGAGGTGTACCATTGA 57.291 39.130 3.56 0.00 39.69 2.57
4142 7263 4.772886 ACCTTGTCACCTAAAGACTTGT 57.227 40.909 0.00 0.00 36.94 3.16
4495 7637 0.912486 GGTGTCCAACCTCTGGCTAT 59.088 55.000 0.00 0.00 46.55 2.97
4638 7783 7.341256 ACAATCCTAATCATCTTGAGCATGTTT 59.659 33.333 0.00 0.00 0.00 2.83
4673 7818 3.935993 GAGGCACCTCAAACTAGCA 57.064 52.632 11.92 0.00 42.31 3.49
4687 7832 2.412591 ACTAGCAAGCATGGGTATCCT 58.587 47.619 0.00 0.00 0.00 3.24
4744 7889 1.004277 GCTGGTATTGGACTTGGGTGA 59.996 52.381 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.760684 TCCTAACTTCACCTCGGTTCTAC 59.239 47.826 0.00 0.00 0.00 2.59
56 57 8.112016 TCGGTATCACTTATCTCTTGAATAGG 57.888 38.462 0.00 0.00 0.00 2.57
99 101 8.792830 AATATTCAGTGTGCACTTAACTACAT 57.207 30.769 19.41 10.39 40.20 2.29
101 103 8.251750 TGAATATTCAGTGTGCACTTAACTAC 57.748 34.615 19.41 6.51 40.20 2.73
125 127 2.554032 ACTGAAAGAAATTGGACCGCTG 59.446 45.455 0.00 0.00 37.43 5.18
267 323 5.583495 TGAACCAAACAAACCATTAGAACG 58.417 37.500 0.00 0.00 0.00 3.95
268 324 8.432110 AATTGAACCAAACAAACCATTAGAAC 57.568 30.769 0.00 0.00 0.00 3.01
294 350 7.846101 TCTAATATCTCCAGCAATCTTCAGA 57.154 36.000 0.00 0.00 0.00 3.27
304 360 8.401490 ACCATCAAATTTCTAATATCTCCAGC 57.599 34.615 0.00 0.00 0.00 4.85
313 369 8.193953 AGTCCAACAACCATCAAATTTCTAAT 57.806 30.769 0.00 0.00 0.00 1.73
316 372 6.777580 ACTAGTCCAACAACCATCAAATTTCT 59.222 34.615 0.00 0.00 0.00 2.52
381 437 3.495753 CCACCGTTAGAAACTGGTAACAC 59.504 47.826 6.17 0.00 46.17 3.32
387 443 2.747446 CCAATCCACCGTTAGAAACTGG 59.253 50.000 0.00 0.00 0.00 4.00
416 477 3.052082 CCGCAGCAACACCTGAGG 61.052 66.667 0.00 0.00 44.41 3.86
425 486 3.947459 TGCTACACCCCGCAGCAA 61.947 61.111 0.00 0.00 42.09 3.91
435 496 0.519077 GCAGCCTGTCTTTGCTACAC 59.481 55.000 0.00 0.00 35.69 2.90
453 514 3.486383 AGACAGAGTCCATAGCTCTAGC 58.514 50.000 0.00 0.00 40.97 3.42
482 543 7.038799 AGGAACTTGTTGGAAGCATTTCATTAT 60.039 33.333 0.00 0.00 27.25 1.28
484 545 5.070847 AGGAACTTGTTGGAAGCATTTCATT 59.929 36.000 0.00 0.00 27.25 2.57
485 546 4.590222 AGGAACTTGTTGGAAGCATTTCAT 59.410 37.500 0.00 0.00 27.25 2.57
487 548 4.550422 GAGGAACTTGTTGGAAGCATTTC 58.450 43.478 0.00 0.00 41.55 2.17
490 551 2.108952 AGGAGGAACTTGTTGGAAGCAT 59.891 45.455 0.00 0.00 41.55 3.79
583 647 6.230472 AGTACATTACATTGTGAACTCTGCA 58.770 36.000 0.00 0.00 0.00 4.41
584 648 6.727824 AGTACATTACATTGTGAACTCTGC 57.272 37.500 0.00 0.00 0.00 4.26
587 651 9.973246 CAACATAGTACATTACATTGTGAACTC 57.027 33.333 0.00 0.00 0.00 3.01
595 659 8.856153 TGTCCAACAACATAGTACATTACATT 57.144 30.769 0.00 0.00 0.00 2.71
604 668 8.318412 ACATACATTCTGTCCAACAACATAGTA 58.682 33.333 0.00 0.00 0.00 1.82
605 669 7.168219 ACATACATTCTGTCCAACAACATAGT 58.832 34.615 0.00 0.00 0.00 2.12
606 670 7.615582 ACATACATTCTGTCCAACAACATAG 57.384 36.000 0.00 0.00 0.00 2.23
612 676 5.136828 ACCAAACATACATTCTGTCCAACA 58.863 37.500 0.00 0.00 0.00 3.33
630 694 3.053991 TCAAAGTCTTGACCAGGACCAAA 60.054 43.478 8.39 0.00 38.07 3.28
631 695 2.507886 TCAAAGTCTTGACCAGGACCAA 59.492 45.455 8.39 0.00 38.07 3.67
632 696 2.123589 TCAAAGTCTTGACCAGGACCA 58.876 47.619 8.39 0.00 38.07 4.02
633 697 2.930826 TCAAAGTCTTGACCAGGACC 57.069 50.000 8.39 0.00 38.07 4.46
643 707 7.572523 TGAAATTCAGACATGTCAAAGTCTT 57.427 32.000 27.02 12.64 42.87 3.01
679 743 2.107378 TGTAACTGAATCAAGGGCCACA 59.893 45.455 6.18 0.00 0.00 4.17
680 744 2.749621 CTGTAACTGAATCAAGGGCCAC 59.250 50.000 6.18 0.00 0.00 5.01
681 745 2.290896 CCTGTAACTGAATCAAGGGCCA 60.291 50.000 6.18 0.00 0.00 5.36
682 746 2.026262 TCCTGTAACTGAATCAAGGGCC 60.026 50.000 0.00 0.00 0.00 5.80
684 748 5.102953 TGATCCTGTAACTGAATCAAGGG 57.897 43.478 0.00 0.00 0.00 3.95
732 797 3.634910 CCACAAATATTTAGGAACGGGGG 59.365 47.826 11.59 0.68 0.00 5.40
733 798 3.634910 CCCACAAATATTTAGGAACGGGG 59.365 47.826 16.53 7.57 0.00 5.73
734 799 3.067601 GCCCACAAATATTTAGGAACGGG 59.932 47.826 16.53 12.88 0.00 5.28
735 800 3.697045 TGCCCACAAATATTTAGGAACGG 59.303 43.478 16.53 6.16 0.00 4.44
736 801 4.439563 GGTGCCCACAAATATTTAGGAACG 60.440 45.833 16.53 5.36 0.00 3.95
737 802 4.142026 GGGTGCCCACAAATATTTAGGAAC 60.142 45.833 16.53 13.89 35.81 3.62
739 804 3.270960 AGGGTGCCCACAAATATTTAGGA 59.729 43.478 16.53 0.26 38.92 2.94
740 805 3.384467 CAGGGTGCCCACAAATATTTAGG 59.616 47.826 10.26 6.17 38.92 2.69
741 806 4.023291 ACAGGGTGCCCACAAATATTTAG 58.977 43.478 10.26 0.00 38.92 1.85
742 807 4.054359 ACAGGGTGCCCACAAATATTTA 57.946 40.909 10.26 0.00 38.92 1.40
743 808 2.901291 ACAGGGTGCCCACAAATATTT 58.099 42.857 10.26 0.00 38.92 1.40
744 809 2.621556 ACAGGGTGCCCACAAATATT 57.378 45.000 10.26 0.00 38.92 1.28
745 810 2.580783 AGTACAGGGTGCCCACAAATAT 59.419 45.455 10.26 0.00 38.92 1.28
746 811 1.989586 AGTACAGGGTGCCCACAAATA 59.010 47.619 10.26 0.00 38.92 1.40
751 816 0.468648 GGATAGTACAGGGTGCCCAC 59.531 60.000 10.26 0.00 38.92 4.61
752 817 0.341961 AGGATAGTACAGGGTGCCCA 59.658 55.000 10.26 0.00 38.92 5.36
753 818 2.393630 TAGGATAGTACAGGGTGCCC 57.606 55.000 0.00 0.00 0.00 5.36
754 819 2.832733 GGATAGGATAGTACAGGGTGCC 59.167 54.545 0.00 0.00 0.00 5.01
756 821 4.712337 GGATGGATAGGATAGTACAGGGTG 59.288 50.000 0.00 0.00 0.00 4.61
757 822 4.360140 TGGATGGATAGGATAGTACAGGGT 59.640 45.833 0.00 0.00 0.00 4.34
758 823 4.712337 GTGGATGGATAGGATAGTACAGGG 59.288 50.000 0.00 0.00 0.00 4.45
759 824 5.333581 TGTGGATGGATAGGATAGTACAGG 58.666 45.833 0.00 0.00 0.00 4.00
782 847 6.884832 TGTGGATGGATAACTACTCGAATTT 58.115 36.000 0.00 0.00 0.00 1.82
816 881 5.945784 TCCTTTTGTGATAAGGGAATGAGTG 59.054 40.000 0.00 0.00 42.02 3.51
817 882 6.139679 TCCTTTTGTGATAAGGGAATGAGT 57.860 37.500 0.00 0.00 42.02 3.41
819 884 6.437162 CCTTTCCTTTTGTGATAAGGGAATGA 59.563 38.462 11.95 0.00 41.26 2.57
822 887 5.959512 TCCTTTCCTTTTGTGATAAGGGAA 58.040 37.500 0.00 0.00 42.02 3.97
823 888 5.592587 TCCTTTCCTTTTGTGATAAGGGA 57.407 39.130 0.00 0.00 42.02 4.20
825 890 5.243730 TGCTTCCTTTCCTTTTGTGATAAGG 59.756 40.000 0.00 0.00 42.89 2.69
826 891 6.331369 TGCTTCCTTTCCTTTTGTGATAAG 57.669 37.500 0.00 0.00 0.00 1.73
827 892 6.916360 ATGCTTCCTTTCCTTTTGTGATAA 57.084 33.333 0.00 0.00 0.00 1.75
828 893 6.916360 AATGCTTCCTTTCCTTTTGTGATA 57.084 33.333 0.00 0.00 0.00 2.15
829 894 5.813513 AATGCTTCCTTTCCTTTTGTGAT 57.186 34.783 0.00 0.00 0.00 3.06
830 895 6.916360 ATAATGCTTCCTTTCCTTTTGTGA 57.084 33.333 0.00 0.00 0.00 3.58
832 897 7.066307 ACAATAATGCTTCCTTTCCTTTTGT 57.934 32.000 0.00 0.00 0.00 2.83
833 898 6.591448 GGACAATAATGCTTCCTTTCCTTTTG 59.409 38.462 0.00 0.00 0.00 2.44
834 899 6.269769 TGGACAATAATGCTTCCTTTCCTTTT 59.730 34.615 0.00 0.00 0.00 2.27
835 900 5.779771 TGGACAATAATGCTTCCTTTCCTTT 59.220 36.000 0.00 0.00 0.00 3.11
838 903 4.462483 TGTGGACAATAATGCTTCCTTTCC 59.538 41.667 0.00 0.00 0.00 3.13
839 904 5.643379 TGTGGACAATAATGCTTCCTTTC 57.357 39.130 0.00 0.00 0.00 2.62
841 906 7.716799 TTTATGTGGACAATAATGCTTCCTT 57.283 32.000 0.00 0.00 0.00 3.36
842 907 7.902920 ATTTATGTGGACAATAATGCTTCCT 57.097 32.000 0.00 0.00 0.00 3.36
843 908 7.379529 CGAATTTATGTGGACAATAATGCTTCC 59.620 37.037 0.00 0.00 0.00 3.46
844 909 8.128582 TCGAATTTATGTGGACAATAATGCTTC 58.871 33.333 0.00 0.00 0.00 3.86
845 910 7.995289 TCGAATTTATGTGGACAATAATGCTT 58.005 30.769 0.00 0.00 0.00 3.91
846 911 7.283127 ACTCGAATTTATGTGGACAATAATGCT 59.717 33.333 0.00 0.00 0.00 3.79
847 912 7.417612 ACTCGAATTTATGTGGACAATAATGC 58.582 34.615 0.00 0.00 0.00 3.56
849 914 8.774586 GCTACTCGAATTTATGTGGACAATAAT 58.225 33.333 0.00 0.00 0.00 1.28
852 917 6.258727 CAGCTACTCGAATTTATGTGGACAAT 59.741 38.462 0.00 0.00 0.00 2.71
853 918 5.580691 CAGCTACTCGAATTTATGTGGACAA 59.419 40.000 0.00 0.00 0.00 3.18
862 3065 5.069914 TGGATAAGCCAGCTACTCGAATTTA 59.930 40.000 0.00 0.00 43.33 1.40
1065 3274 0.465460 TGCCCTTCTGCAGTTCGTTT 60.465 50.000 14.67 0.00 36.04 3.60
1066 3275 0.250901 ATGCCCTTCTGCAGTTCGTT 60.251 50.000 14.67 0.00 45.93 3.85
1454 3663 1.463674 GCGAGGGTCAACCATGATTT 58.536 50.000 0.89 0.00 43.89 2.17
1489 3698 1.139947 CGAGCTCTTTCCGGTCCTC 59.860 63.158 12.85 0.00 0.00 3.71
1602 3811 0.037303 TCTTGCCAAGGCCTCTGAAG 59.963 55.000 5.23 6.58 41.09 3.02
1606 3815 0.538287 GTTGTCTTGCCAAGGCCTCT 60.538 55.000 5.23 0.00 41.09 3.69
1651 3860 3.267597 AATCAAACTGCGCGTGGCC 62.268 57.895 8.43 0.00 42.61 5.36
1774 3984 4.003648 CCTCGGAGTTTGTTGATTAGCTT 58.996 43.478 4.02 0.00 0.00 3.74
2130 4597 6.176014 AGAGACTTAGGCGCCTATTTTTAT 57.824 37.500 35.60 19.52 0.00 1.40
2131 4598 5.128171 TGAGAGACTTAGGCGCCTATTTTTA 59.872 40.000 35.60 19.94 0.00 1.52
2132 4599 4.081087 TGAGAGACTTAGGCGCCTATTTTT 60.081 41.667 35.60 20.41 0.00 1.94
2133 4600 3.451178 TGAGAGACTTAGGCGCCTATTTT 59.549 43.478 35.60 22.39 0.00 1.82
2134 4601 3.031736 TGAGAGACTTAGGCGCCTATTT 58.968 45.455 35.60 24.93 0.00 1.40
2135 4602 2.667470 TGAGAGACTTAGGCGCCTATT 58.333 47.619 35.60 25.29 0.00 1.73
2136 4603 2.366640 TGAGAGACTTAGGCGCCTAT 57.633 50.000 35.60 22.95 0.00 2.57
2137 4604 1.957177 CATGAGAGACTTAGGCGCCTA 59.043 52.381 32.24 32.24 0.00 3.93
2138 4605 0.749649 CATGAGAGACTTAGGCGCCT 59.250 55.000 34.85 34.85 0.00 5.52
2139 4606 0.878086 GCATGAGAGACTTAGGCGCC 60.878 60.000 21.89 21.89 0.00 6.53
2140 4607 0.179100 TGCATGAGAGACTTAGGCGC 60.179 55.000 0.00 0.00 29.57 6.53
2141 4608 1.135915 ACTGCATGAGAGACTTAGGCG 59.864 52.381 0.00 0.00 29.57 5.52
2142 4609 2.977772 ACTGCATGAGAGACTTAGGC 57.022 50.000 0.00 0.00 0.00 3.93
2143 4610 4.633565 GGAAAACTGCATGAGAGACTTAGG 59.366 45.833 0.00 0.00 0.00 2.69
2144 4611 5.486526 AGGAAAACTGCATGAGAGACTTAG 58.513 41.667 0.00 0.00 0.00 2.18
2145 4612 5.489792 AGGAAAACTGCATGAGAGACTTA 57.510 39.130 0.00 0.00 0.00 2.24
2228 4713 6.845758 AGGCGCCTAAGTATGTACAATATA 57.154 37.500 31.86 0.00 0.00 0.86
2339 4824 5.828299 TGATTATTTCCCATGTTTCCGTC 57.172 39.130 0.00 0.00 0.00 4.79
2342 4827 6.697019 CGTTCATGATTATTTCCCATGTTTCC 59.303 38.462 0.00 0.00 38.88 3.13
2460 4945 8.463930 TCATTGGTTAAATCTTGAGAAAGTGT 57.536 30.769 0.00 0.00 0.00 3.55
2570 5055 4.398319 CAAAAGAACCTACACCTCCACAT 58.602 43.478 0.00 0.00 0.00 3.21
2571 5056 3.434453 CCAAAAGAACCTACACCTCCACA 60.434 47.826 0.00 0.00 0.00 4.17
2573 5058 2.488347 GCCAAAAGAACCTACACCTCCA 60.488 50.000 0.00 0.00 0.00 3.86
2574 5059 2.160205 GCCAAAAGAACCTACACCTCC 58.840 52.381 0.00 0.00 0.00 4.30
2575 5060 2.858745 TGCCAAAAGAACCTACACCTC 58.141 47.619 0.00 0.00 0.00 3.85
2577 5062 2.296190 CCTTGCCAAAAGAACCTACACC 59.704 50.000 0.00 0.00 0.00 4.16
2578 5063 3.219281 TCCTTGCCAAAAGAACCTACAC 58.781 45.455 0.00 0.00 0.00 2.90
2579 5064 3.137544 TCTCCTTGCCAAAAGAACCTACA 59.862 43.478 0.00 0.00 0.00 2.74
2581 5066 4.335416 CATCTCCTTGCCAAAAGAACCTA 58.665 43.478 0.00 0.00 0.00 3.08
2618 5178 4.154942 CTCCATTTGGCCAGCCTATATTT 58.845 43.478 5.11 0.00 36.94 1.40
2619 5179 3.140895 ACTCCATTTGGCCAGCCTATATT 59.859 43.478 5.11 0.00 36.94 1.28
2620 5180 2.718609 ACTCCATTTGGCCAGCCTATAT 59.281 45.455 5.11 0.00 36.94 0.86
2794 5439 5.726793 AGGTTTCCAATATACCTGAGACACT 59.273 40.000 0.00 0.00 40.68 3.55
2816 5461 3.866449 GCCCAAAAGTGTGAGTCTCTAGG 60.866 52.174 0.65 0.00 0.00 3.02
2819 5464 1.202818 GGCCCAAAAGTGTGAGTCTCT 60.203 52.381 0.65 0.00 0.00 3.10
2871 5516 2.754946 TATCGCGAAAGACCCAAAGT 57.245 45.000 15.24 0.00 0.00 2.66
2966 5679 0.938008 TCGCGTGCAATGTTGTGTAA 59.062 45.000 5.77 0.00 0.00 2.41
2969 5682 2.159720 TCTTATCGCGTGCAATGTTGTG 60.160 45.455 5.77 0.00 0.00 3.33
3102 5815 3.513912 ACGACCTTGTGTCAGGATAATCA 59.486 43.478 0.00 0.00 44.71 2.57
3159 5875 8.346300 CACGATACATAGAGTCTACTGTGAAAT 58.654 37.037 18.08 9.21 34.10 2.17
3240 5996 7.114095 TGAATATTTGGACTTAAGTGGTACCC 58.886 38.462 14.14 8.10 0.00 3.69
3253 6009 6.147821 CGGAGATACCACATGAATATTTGGAC 59.852 42.308 10.28 3.00 36.44 4.02
3357 6190 5.209818 AGAGGTGTTTAATTGTCTCGTCA 57.790 39.130 0.00 0.00 0.00 4.35
3416 6249 9.970395 GATACAAATTTGATGCTATTTGGATGA 57.030 29.630 24.64 0.00 42.50 2.92
3718 6551 1.380246 GCTGCCATCCATGTTGGGA 60.380 57.895 12.46 9.34 42.21 4.37
3767 6600 4.726583 AGACCGAGACTATGCCTATGTTA 58.273 43.478 0.00 0.00 0.00 2.41
3768 6601 3.567397 AGACCGAGACTATGCCTATGTT 58.433 45.455 0.00 0.00 0.00 2.71
3792 6625 2.614057 CAATTCGGCAACCATAGAGTCC 59.386 50.000 0.00 0.00 0.00 3.85
3832 6665 5.106673 GCCAAACACCAGTAGTCTGATAAAC 60.107 44.000 0.00 0.00 43.76 2.01
3833 6666 5.001232 GCCAAACACCAGTAGTCTGATAAA 58.999 41.667 0.00 0.00 43.76 1.40
3978 7099 9.838339 AAGCAAACTAGCTATTGTGATTATAGT 57.162 29.630 3.13 0.00 45.89 2.12
4188 7309 4.998051 ACCCACTTCCACATCAAACTATT 58.002 39.130 0.00 0.00 0.00 1.73
4199 7320 3.524648 TTCGGCGACCCACTTCCAC 62.525 63.158 10.16 0.00 0.00 4.02
4495 7637 3.249799 CCTTGCTTGTAATGTTGACGTGA 59.750 43.478 0.00 0.00 0.00 4.35
4559 7701 3.180980 CACGCAAAACTTCAAAGCATGAG 59.819 43.478 0.00 0.00 39.77 2.90
4638 7783 4.574828 GTGCCTCAAGTGAACTAACTTTCA 59.425 41.667 0.00 0.00 38.34 2.69
4673 7818 1.849039 AGCTCAAGGATACCCATGCTT 59.151 47.619 0.00 0.00 42.97 3.91
4687 7832 3.591527 TCCTATTTCCTTTGGGAGCTCAA 59.408 43.478 17.19 0.00 43.29 3.02
4744 7889 8.273780 CTCTGGAAGTTCACTTATGCTATTTT 57.726 34.615 5.01 0.00 36.11 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.