Multiple sequence alignment - TraesCS7D01G005100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G005100 chr7D 100.000 2648 0 0 1 2648 2501695 2499048 0.000000e+00 4891.0
1 TraesCS7D01G005100 chr7D 88.398 793 82 7 822 1614 2561611 2560829 0.000000e+00 946.0
2 TraesCS7D01G005100 chr7D 87.201 836 85 16 822 1649 2607380 2606559 0.000000e+00 931.0
3 TraesCS7D01G005100 chr7D 82.462 861 82 22 1 823 64004832 64005661 0.000000e+00 689.0
4 TraesCS7D01G005100 chr7D 81.731 624 59 16 1869 2473 3232353 3231766 1.110000e-128 470.0
5 TraesCS7D01G005100 chr7D 81.410 624 61 14 1869 2473 3245049 3244462 2.400000e-125 459.0
6 TraesCS7D01G005100 chr7D 100.000 32 0 0 1704 1735 2560791 2560760 2.850000e-05 60.2
7 TraesCS7D01G005100 chr7A 87.296 921 96 14 822 1730 3315169 3316080 0.000000e+00 1033.0
8 TraesCS7D01G005100 chr7A 88.361 842 89 6 822 1655 2115047 2114207 0.000000e+00 1003.0
9 TraesCS7D01G005100 chr7A 78.082 657 77 33 1877 2498 3204512 3203888 1.170000e-93 353.0
10 TraesCS7D01G005100 chr7A 80.952 294 40 13 534 823 178886234 178885953 4.440000e-53 219.0
11 TraesCS7D01G005100 chr7A 83.824 136 17 2 2513 2644 2657357 2657223 9.950000e-25 124.0
12 TraesCS7D01G005100 chr7A 100.000 34 0 0 1702 1735 2110084 2110051 2.200000e-06 63.9
13 TraesCS7D01G005100 chr4A 86.957 920 107 3 822 1735 740452943 740452031 0.000000e+00 1022.0
14 TraesCS7D01G005100 chr4A 86.725 919 92 14 821 1732 740940208 740941103 0.000000e+00 994.0
15 TraesCS7D01G005100 chr4A 88.207 831 84 7 822 1648 740016546 740015726 0.000000e+00 979.0
16 TraesCS7D01G005100 chr4A 87.605 831 91 5 822 1649 740581611 740582432 0.000000e+00 953.0
17 TraesCS7D01G005100 chr4A 87.116 846 88 13 822 1653 739736782 739737620 0.000000e+00 939.0
18 TraesCS7D01G005100 chr4A 86.369 873 44 19 1 823 718088263 718089110 0.000000e+00 883.0
19 TraesCS7D01G005100 chr4A 86.599 791 87 13 822 1607 739870090 739870866 0.000000e+00 856.0
20 TraesCS7D01G005100 chr4A 83.461 653 75 15 1872 2498 740941299 740941944 6.360000e-161 577.0
21 TraesCS7D01G005100 chr1D 83.197 857 80 22 2 825 454506954 454506129 0.000000e+00 726.0
22 TraesCS7D01G005100 chr6B 83.118 853 78 31 4 823 230766012 230765193 0.000000e+00 717.0
23 TraesCS7D01G005100 chr6B 91.640 311 19 6 222 528 645403510 645403817 8.760000e-115 424.0
24 TraesCS7D01G005100 chr3B 82.538 859 87 23 1 825 61899226 61900055 0.000000e+00 697.0
25 TraesCS7D01G005100 chr4B 82.033 846 91 34 4 821 659603269 659602457 0.000000e+00 664.0
26 TraesCS7D01G005100 chr4B 77.257 853 152 22 812 1649 572553678 572554503 1.860000e-126 462.0
27 TraesCS7D01G005100 chr5D 81.776 867 84 28 1 823 133863169 133864005 0.000000e+00 658.0
28 TraesCS7D01G005100 chr5D 76.923 871 103 49 11 825 291916627 291915799 3.170000e-109 405.0
29 TraesCS7D01G005100 chr5D 78.010 623 78 34 239 825 4220941 4221540 1.170000e-88 337.0
30 TraesCS7D01G005100 chr5B 81.840 837 95 32 1 821 290722695 290723490 0.000000e+00 651.0
31 TraesCS7D01G005100 chr5B 87.782 532 41 14 314 823 144237428 144237957 3.770000e-168 601.0
32 TraesCS7D01G005100 chr5B 88.101 395 23 4 4 398 659181674 659181304 5.200000e-122 448.0
33 TraesCS7D01G005100 chr2B 81.508 849 95 25 4 823 216716525 216715710 2.220000e-180 641.0
34 TraesCS7D01G005100 chr2B 88.269 520 34 8 1 517 157974688 157975183 4.880000e-167 597.0
35 TraesCS7D01G005100 chr2B 88.704 301 20 8 534 823 795915981 795916278 3.240000e-94 355.0
36 TraesCS7D01G005100 chr1B 81.301 861 92 29 4 825 452509698 452508868 3.720000e-178 634.0
37 TraesCS7D01G005100 chr1B 86.550 342 25 1 1 342 565999033 565999353 9.010000e-95 357.0
38 TraesCS7D01G005100 chr7B 81.526 839 90 31 1 806 54548965 54549771 4.810000e-177 630.0
39 TraesCS7D01G005100 chrUn 81.731 624 59 16 1869 2473 328676648 328676061 1.110000e-128 470.0
40 TraesCS7D01G005100 chrUn 81.731 624 59 16 1869 2473 347564305 347563718 1.110000e-128 470.0
41 TraesCS7D01G005100 chr4D 76.813 841 156 20 824 1649 458384269 458385085 1.130000e-118 436.0
42 TraesCS7D01G005100 chr3D 77.509 867 95 51 14 823 472200812 472201635 1.880000e-116 429.0
43 TraesCS7D01G005100 chr2D 75.437 859 108 46 4 823 165005106 165004312 3.290000e-84 322.0
44 TraesCS7D01G005100 chr6D 86.486 296 33 7 534 825 153861213 153860921 4.250000e-83 318.0
45 TraesCS7D01G005100 chr5A 84.667 300 30 13 534 823 524341787 524342080 4.310000e-73 285.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G005100 chr7D 2499048 2501695 2647 True 4891.0 4891 100.000 1 2648 1 chr7D.!!$R1 2647
1 TraesCS7D01G005100 chr7D 2606559 2607380 821 True 931.0 931 87.201 822 1649 1 chr7D.!!$R2 827
2 TraesCS7D01G005100 chr7D 64004832 64005661 829 False 689.0 689 82.462 1 823 1 chr7D.!!$F1 822
3 TraesCS7D01G005100 chr7D 2560760 2561611 851 True 503.1 946 94.199 822 1735 2 chr7D.!!$R5 913
4 TraesCS7D01G005100 chr7D 3231766 3232353 587 True 470.0 470 81.731 1869 2473 1 chr7D.!!$R3 604
5 TraesCS7D01G005100 chr7D 3244462 3245049 587 True 459.0 459 81.410 1869 2473 1 chr7D.!!$R4 604
6 TraesCS7D01G005100 chr7A 3315169 3316080 911 False 1033.0 1033 87.296 822 1730 1 chr7A.!!$F1 908
7 TraesCS7D01G005100 chr7A 2114207 2115047 840 True 1003.0 1003 88.361 822 1655 1 chr7A.!!$R2 833
8 TraesCS7D01G005100 chr7A 3203888 3204512 624 True 353.0 353 78.082 1877 2498 1 chr7A.!!$R4 621
9 TraesCS7D01G005100 chr4A 740452031 740452943 912 True 1022.0 1022 86.957 822 1735 1 chr4A.!!$R2 913
10 TraesCS7D01G005100 chr4A 740015726 740016546 820 True 979.0 979 88.207 822 1648 1 chr4A.!!$R1 826
11 TraesCS7D01G005100 chr4A 740581611 740582432 821 False 953.0 953 87.605 822 1649 1 chr4A.!!$F4 827
12 TraesCS7D01G005100 chr4A 739736782 739737620 838 False 939.0 939 87.116 822 1653 1 chr4A.!!$F2 831
13 TraesCS7D01G005100 chr4A 718088263 718089110 847 False 883.0 883 86.369 1 823 1 chr4A.!!$F1 822
14 TraesCS7D01G005100 chr4A 739870090 739870866 776 False 856.0 856 86.599 822 1607 1 chr4A.!!$F3 785
15 TraesCS7D01G005100 chr4A 740940208 740941944 1736 False 785.5 994 85.093 821 2498 2 chr4A.!!$F5 1677
16 TraesCS7D01G005100 chr1D 454506129 454506954 825 True 726.0 726 83.197 2 825 1 chr1D.!!$R1 823
17 TraesCS7D01G005100 chr6B 230765193 230766012 819 True 717.0 717 83.118 4 823 1 chr6B.!!$R1 819
18 TraesCS7D01G005100 chr3B 61899226 61900055 829 False 697.0 697 82.538 1 825 1 chr3B.!!$F1 824
19 TraesCS7D01G005100 chr4B 659602457 659603269 812 True 664.0 664 82.033 4 821 1 chr4B.!!$R1 817
20 TraesCS7D01G005100 chr4B 572553678 572554503 825 False 462.0 462 77.257 812 1649 1 chr4B.!!$F1 837
21 TraesCS7D01G005100 chr5D 133863169 133864005 836 False 658.0 658 81.776 1 823 1 chr5D.!!$F2 822
22 TraesCS7D01G005100 chr5D 291915799 291916627 828 True 405.0 405 76.923 11 825 1 chr5D.!!$R1 814
23 TraesCS7D01G005100 chr5D 4220941 4221540 599 False 337.0 337 78.010 239 825 1 chr5D.!!$F1 586
24 TraesCS7D01G005100 chr5B 290722695 290723490 795 False 651.0 651 81.840 1 821 1 chr5B.!!$F2 820
25 TraesCS7D01G005100 chr5B 144237428 144237957 529 False 601.0 601 87.782 314 823 1 chr5B.!!$F1 509
26 TraesCS7D01G005100 chr2B 216715710 216716525 815 True 641.0 641 81.508 4 823 1 chr2B.!!$R1 819
27 TraesCS7D01G005100 chr1B 452508868 452509698 830 True 634.0 634 81.301 4 825 1 chr1B.!!$R1 821
28 TraesCS7D01G005100 chr7B 54548965 54549771 806 False 630.0 630 81.526 1 806 1 chr7B.!!$F1 805
29 TraesCS7D01G005100 chrUn 328676061 328676648 587 True 470.0 470 81.731 1869 2473 1 chrUn.!!$R1 604
30 TraesCS7D01G005100 chrUn 347563718 347564305 587 True 470.0 470 81.731 1869 2473 1 chrUn.!!$R2 604
31 TraesCS7D01G005100 chr4D 458384269 458385085 816 False 436.0 436 76.813 824 1649 1 chr4D.!!$F1 825
32 TraesCS7D01G005100 chr3D 472200812 472201635 823 False 429.0 429 77.509 14 823 1 chr3D.!!$F1 809
33 TraesCS7D01G005100 chr2D 165004312 165005106 794 True 322.0 322 75.437 4 823 1 chr2D.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 326 0.326238 AATGGGCGAGGGAGGACTAA 60.326 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1948 0.106708 TGCATCCTGAATACCCGCTC 59.893 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 138 4.838152 GAGCGGCGCCCTCATCAA 62.838 66.667 30.40 0.00 0.00 2.57
165 181 4.293648 CCTGTGACGGCACCGACA 62.294 66.667 21.02 13.50 44.51 4.35
309 326 0.326238 AATGGGCGAGGGAGGACTAA 60.326 55.000 0.00 0.00 0.00 2.24
664 797 1.429927 TTCGTGCAAAAGTCGCCGAA 61.430 50.000 0.00 0.00 38.67 4.30
694 829 0.945099 TTTTGTACGCAACATCGCCA 59.055 45.000 0.00 0.00 38.10 5.69
789 926 1.971695 AAGGGGCTCTTTTTCGGCG 60.972 57.895 0.00 0.00 29.99 6.46
790 927 4.116328 GGGGCTCTTTTTCGGCGC 62.116 66.667 0.00 0.00 38.02 6.53
791 928 4.116328 GGGCTCTTTTTCGGCGCC 62.116 66.667 19.07 19.07 39.98 6.53
792 929 4.460873 GGCTCTTTTTCGGCGCCG 62.461 66.667 42.13 42.13 41.35 6.46
793 930 4.460873 GCTCTTTTTCGGCGCCGG 62.461 66.667 44.95 29.88 40.25 6.13
794 931 3.799755 CTCTTTTTCGGCGCCGGG 61.800 66.667 44.95 28.46 40.25 5.73
818 955 4.350620 CCGAATCGGCTGGAGATG 57.649 61.111 9.39 0.00 41.17 2.90
819 956 1.958205 CCGAATCGGCTGGAGATGC 60.958 63.158 9.39 0.00 41.17 3.91
864 1001 2.107031 CTGGATCCATGTGCCCAAGATA 59.893 50.000 16.63 0.00 0.00 1.98
872 1009 1.921346 TGCCCAAGATACCACCGGT 60.921 57.895 0.00 0.00 40.16 5.28
997 1152 0.769247 ATGGCTGGCTGATGCTGATA 59.231 50.000 2.00 0.00 39.59 2.15
1020 1175 0.393820 TGAACACCCCACGGTACTTC 59.606 55.000 0.00 0.00 42.04 3.01
1081 1239 1.320852 GAGGCGTCGATTCTTCGTTTC 59.679 52.381 0.00 0.00 45.65 2.78
1083 1241 1.059264 GGCGTCGATTCTTCGTTTCAG 59.941 52.381 0.00 0.00 45.65 3.02
1084 1242 1.059264 GCGTCGATTCTTCGTTTCAGG 59.941 52.381 0.00 0.00 45.65 3.86
1085 1243 1.059264 CGTCGATTCTTCGTTTCAGGC 59.941 52.381 0.00 0.00 45.65 4.85
1094 1255 1.159285 TCGTTTCAGGCATTGAGCTG 58.841 50.000 0.00 0.00 44.79 4.24
1160 1321 2.027377 CCAGCATGAATAGGGCTAGGAG 60.027 54.545 0.00 0.00 39.69 3.69
1161 1322 2.902486 CAGCATGAATAGGGCTAGGAGA 59.098 50.000 0.00 0.00 39.69 3.71
1221 1382 4.277672 GTGATCGGTGGTATTAGCAGTAGA 59.722 45.833 0.00 0.00 0.00 2.59
1224 1385 3.635373 TCGGTGGTATTAGCAGTAGAAGG 59.365 47.826 0.00 0.00 0.00 3.46
1312 1473 0.842030 TCAGGGGCTCAACCAGACAT 60.842 55.000 0.00 0.00 42.05 3.06
1385 1546 6.293298 GCTGCAGATTACAGTGAGAATAATGG 60.293 42.308 20.43 0.00 37.47 3.16
1405 1566 9.851686 ATAATGGTTTGAAGCAGTATGATAAGA 57.148 29.630 13.11 0.00 43.37 2.10
1451 1612 5.001232 TGGAAAATTGCCTGTACTGTCTAC 58.999 41.667 0.00 0.00 0.00 2.59
1452 1613 5.001232 GGAAAATTGCCTGTACTGTCTACA 58.999 41.667 0.00 0.00 0.00 2.74
1458 1622 5.284861 TGCCTGTACTGTCTACAAAAGAA 57.715 39.130 0.00 0.00 35.47 2.52
1530 1694 3.120304 GGCGTCCAAACAATTCTAGTGAC 60.120 47.826 0.00 0.00 0.00 3.67
1650 1861 1.303561 GGTGATGGGTTGCTGAGCA 60.304 57.895 1.40 1.40 36.47 4.26
1651 1862 1.310933 GGTGATGGGTTGCTGAGCAG 61.311 60.000 7.39 0.00 40.61 4.24
1652 1863 0.607489 GTGATGGGTTGCTGAGCAGT 60.607 55.000 7.39 0.00 40.61 4.40
1670 1881 4.940046 AGCAGTCAGTCCACAGAATAAATG 59.060 41.667 0.00 0.00 0.00 2.32
1672 1883 4.095483 CAGTCAGTCCACAGAATAAATGCC 59.905 45.833 0.00 0.00 0.00 4.40
1689 1900 1.580942 CCGAATGCAGTGGGTGTTG 59.419 57.895 7.08 0.00 0.00 3.33
1691 1902 0.518636 CGAATGCAGTGGGTGTTGAG 59.481 55.000 0.00 0.00 0.00 3.02
1697 1908 1.538047 CAGTGGGTGTTGAGGAATGG 58.462 55.000 0.00 0.00 0.00 3.16
1735 1946 5.469084 CCCAGTTTCAGACCTTAGTTTGTAC 59.531 44.000 0.00 0.00 30.26 2.90
1737 1948 6.202954 CCAGTTTCAGACCTTAGTTTGTACTG 59.797 42.308 0.00 0.00 39.14 2.74
1739 1950 7.169982 CAGTTTCAGACCTTAGTTTGTACTGAG 59.830 40.741 12.09 0.00 40.28 3.35
1740 1951 5.135508 TCAGACCTTAGTTTGTACTGAGC 57.864 43.478 0.00 0.00 36.84 4.26
1743 1954 2.028385 ACCTTAGTTTGTACTGAGCGGG 60.028 50.000 0.00 0.00 36.84 6.13
1744 1955 2.028385 CCTTAGTTTGTACTGAGCGGGT 60.028 50.000 0.00 0.00 36.84 5.28
1746 1957 4.142004 CCTTAGTTTGTACTGAGCGGGTAT 60.142 45.833 0.00 0.00 36.84 2.73
1747 1958 3.975168 AGTTTGTACTGAGCGGGTATT 57.025 42.857 0.00 0.00 31.99 1.89
1748 1959 3.858247 AGTTTGTACTGAGCGGGTATTC 58.142 45.455 0.00 0.00 31.99 1.75
1749 1960 3.259876 AGTTTGTACTGAGCGGGTATTCA 59.740 43.478 0.00 0.00 31.99 2.57
1750 1961 3.520290 TTGTACTGAGCGGGTATTCAG 57.480 47.619 0.00 0.27 44.93 3.02
1751 1962 1.754803 TGTACTGAGCGGGTATTCAGG 59.245 52.381 6.47 0.00 43.96 3.86
1752 1963 2.029623 GTACTGAGCGGGTATTCAGGA 58.970 52.381 6.47 0.00 43.96 3.86
1754 1965 1.414181 ACTGAGCGGGTATTCAGGATG 59.586 52.381 6.47 0.00 43.96 3.51
1755 1966 0.106708 TGAGCGGGTATTCAGGATGC 59.893 55.000 0.00 0.00 34.76 3.91
1756 1967 0.106708 GAGCGGGTATTCAGGATGCA 59.893 55.000 0.00 0.00 34.76 3.96
1757 1968 0.546122 AGCGGGTATTCAGGATGCAA 59.454 50.000 0.00 0.00 34.76 4.08
1758 1969 0.663153 GCGGGTATTCAGGATGCAAC 59.337 55.000 0.00 0.00 34.76 4.17
1760 1971 1.692411 GGGTATTCAGGATGCAACCC 58.308 55.000 9.78 6.29 42.14 4.11
1761 1972 1.215423 GGGTATTCAGGATGCAACCCT 59.785 52.381 9.78 7.31 43.98 4.34
1762 1973 2.358195 GGGTATTCAGGATGCAACCCTT 60.358 50.000 9.78 0.00 43.98 3.95
1765 1976 2.673775 TTCAGGATGCAACCCTTGAA 57.326 45.000 9.78 11.13 34.76 2.69
1767 1978 2.726821 TCAGGATGCAACCCTTGAATC 58.273 47.619 9.78 0.00 43.72 2.52
1771 1982 2.726821 GATGCAACCCTTGAATCCTGA 58.273 47.619 0.00 0.00 39.41 3.86
1772 1983 2.673775 TGCAACCCTTGAATCCTGAA 57.326 45.000 0.00 0.00 0.00 3.02
1773 1984 2.956132 TGCAACCCTTGAATCCTGAAA 58.044 42.857 0.00 0.00 0.00 2.69
1774 1985 2.627699 TGCAACCCTTGAATCCTGAAAC 59.372 45.455 0.00 0.00 0.00 2.78
1776 1987 3.305608 GCAACCCTTGAATCCTGAAACTG 60.306 47.826 0.00 0.00 0.00 3.16
1777 1988 2.519013 ACCCTTGAATCCTGAAACTGC 58.481 47.619 0.00 0.00 0.00 4.40
1778 1989 2.108952 ACCCTTGAATCCTGAAACTGCT 59.891 45.455 0.00 0.00 0.00 4.24
1779 1990 2.490903 CCCTTGAATCCTGAAACTGCTG 59.509 50.000 0.00 0.00 0.00 4.41
1780 1991 2.490903 CCTTGAATCCTGAAACTGCTGG 59.509 50.000 0.00 0.00 0.00 4.85
1781 1992 2.957402 TGAATCCTGAAACTGCTGGT 57.043 45.000 0.00 0.00 0.00 4.00
1782 1993 3.228188 TGAATCCTGAAACTGCTGGTT 57.772 42.857 0.00 0.00 40.28 3.67
1791 2030 2.071778 AACTGCTGGTTTCCACATGT 57.928 45.000 0.00 0.00 33.90 3.21
1808 2047 5.008911 CCACATGTCTTTTCACTGTTGATGA 59.991 40.000 0.00 0.00 0.00 2.92
1812 2051 7.230108 ACATGTCTTTTCACTGTTGATGATTCT 59.770 33.333 0.00 0.00 0.00 2.40
1814 2053 8.675705 TGTCTTTTCACTGTTGATGATTCTTA 57.324 30.769 0.00 0.00 0.00 2.10
1822 2061 6.971184 CACTGTTGATGATTCTTATTTGGCTC 59.029 38.462 0.00 0.00 0.00 4.70
1823 2062 6.096001 ACTGTTGATGATTCTTATTTGGCTCC 59.904 38.462 0.00 0.00 0.00 4.70
1824 2063 6.189859 TGTTGATGATTCTTATTTGGCTCCT 58.810 36.000 0.00 0.00 0.00 3.69
1825 2064 6.095860 TGTTGATGATTCTTATTTGGCTCCTG 59.904 38.462 0.00 0.00 0.00 3.86
1829 2068 4.158394 TGATTCTTATTTGGCTCCTGCAAC 59.842 41.667 0.00 0.00 41.91 4.17
1843 2082 2.224113 CCTGCAACAAAGGCATGTCTTT 60.224 45.455 19.49 19.49 41.06 2.52
1847 2086 3.492011 GCAACAAAGGCATGTCTTTTCTG 59.508 43.478 22.42 20.77 35.04 3.02
1853 2092 6.265196 ACAAAGGCATGTCTTTTCTGTTATCA 59.735 34.615 22.42 0.00 35.04 2.15
1855 2094 6.259550 AGGCATGTCTTTTCTGTTATCAAC 57.740 37.500 0.00 0.00 0.00 3.18
1862 2101 5.915196 GTCTTTTCTGTTATCAACAAGGTGC 59.085 40.000 0.00 0.00 41.61 5.01
1863 2102 5.592282 TCTTTTCTGTTATCAACAAGGTGCA 59.408 36.000 0.00 0.00 41.61 4.57
1865 2104 5.375417 TTCTGTTATCAACAAGGTGCATG 57.625 39.130 0.00 0.00 41.61 4.06
1967 2238 6.346838 GCTGTTTTGCTGGTTGTGAATATTTC 60.347 38.462 0.00 0.00 0.00 2.17
1987 2258 9.772973 ATATTTCCTGTTTATAATGTGCTACGA 57.227 29.630 0.00 0.00 0.00 3.43
2007 2278 6.540438 ACGAGATTAACCTTGATACCTTCA 57.460 37.500 0.00 0.00 0.00 3.02
2011 2282 9.542462 CGAGATTAACCTTGATACCTTCAATAA 57.458 33.333 0.00 0.00 43.30 1.40
2040 2311 8.920509 ATTTTAGTTTTAGTTGCGAACTTGTT 57.079 26.923 6.82 0.00 42.81 2.83
2041 2312 7.958112 TTTAGTTTTAGTTGCGAACTTGTTC 57.042 32.000 6.82 3.60 42.81 3.18
2057 2328 2.315176 TGTTCTGGTCAATTTGTGGGG 58.685 47.619 0.00 0.00 0.00 4.96
2071 2350 1.029681 GTGGGGTTGTTTGACTGACC 58.970 55.000 0.00 0.00 0.00 4.02
2116 2404 0.325933 CAGGAATGTCTGACTGGGCA 59.674 55.000 9.51 0.00 36.93 5.36
2117 2405 0.326264 AGGAATGTCTGACTGGGCAC 59.674 55.000 9.51 0.00 0.00 5.01
2118 2406 0.326264 GGAATGTCTGACTGGGCACT 59.674 55.000 9.51 0.00 0.00 4.40
2142 2430 7.605691 ACTTCATTCTCAAGTCTAAATGTCCTG 59.394 37.037 0.00 0.00 32.31 3.86
2227 2528 4.264253 AGTTGCTAGCATGCTGTGATTTA 58.736 39.130 30.42 7.21 0.00 1.40
2233 2535 7.944061 TGCTAGCATGCTGTGATTTATTATTT 58.056 30.769 30.42 0.00 0.00 1.40
2255 2557 8.782339 ATTTCAATTTGGATTCCAGAAATGTC 57.218 30.769 21.09 0.00 35.12 3.06
2297 2609 4.513442 TGTACCGTACCGTGTTACTATCT 58.487 43.478 6.23 0.00 0.00 1.98
2300 2612 3.375299 ACCGTACCGTGTTACTATCTGTC 59.625 47.826 0.00 0.00 0.00 3.51
2335 2647 2.534990 AGTTCAGTCTCTAGCTTGCCT 58.465 47.619 0.00 0.00 0.00 4.75
2347 2659 3.722728 AGCTTGCCTTCTTTTCTGTTG 57.277 42.857 0.00 0.00 0.00 3.33
2474 2786 5.350365 GGTTGCGTAGATTTCATCTTACACA 59.650 40.000 0.00 0.00 40.76 3.72
2479 2791 6.330278 CGTAGATTTCATCTTACACAGACCA 58.670 40.000 0.00 0.00 40.76 4.02
2483 2795 7.170965 AGATTTCATCTTACACAGACCATTGT 58.829 34.615 0.00 0.00 35.76 2.71
2504 2816 4.219264 TGATGTGTCACAAGATATGGCA 57.781 40.909 10.28 0.00 0.00 4.92
2505 2817 4.587891 TGATGTGTCACAAGATATGGCAA 58.412 39.130 10.28 0.00 32.45 4.52
2506 2818 4.637091 TGATGTGTCACAAGATATGGCAAG 59.363 41.667 10.28 0.00 32.45 4.01
2507 2819 3.346315 TGTGTCACAAGATATGGCAAGG 58.654 45.455 2.31 0.00 32.45 3.61
2508 2820 3.244875 TGTGTCACAAGATATGGCAAGGT 60.245 43.478 2.31 0.00 32.45 3.50
2509 2821 3.758554 GTGTCACAAGATATGGCAAGGTT 59.241 43.478 0.00 0.00 32.45 3.50
2510 2822 4.009675 TGTCACAAGATATGGCAAGGTTC 58.990 43.478 0.00 0.00 0.00 3.62
2511 2823 4.009675 GTCACAAGATATGGCAAGGTTCA 58.990 43.478 0.00 0.00 0.00 3.18
2512 2824 4.095483 GTCACAAGATATGGCAAGGTTCAG 59.905 45.833 0.00 0.00 0.00 3.02
2513 2825 4.019411 TCACAAGATATGGCAAGGTTCAGA 60.019 41.667 0.00 0.00 0.00 3.27
2514 2826 4.885907 CACAAGATATGGCAAGGTTCAGAT 59.114 41.667 0.00 0.00 0.00 2.90
2515 2827 4.885907 ACAAGATATGGCAAGGTTCAGATG 59.114 41.667 0.00 0.00 0.00 2.90
2516 2828 4.785346 AGATATGGCAAGGTTCAGATGT 57.215 40.909 0.00 0.00 0.00 3.06
2517 2829 5.894298 AGATATGGCAAGGTTCAGATGTA 57.106 39.130 0.00 0.00 0.00 2.29
2518 2830 6.445451 AGATATGGCAAGGTTCAGATGTAT 57.555 37.500 0.00 0.00 0.00 2.29
2519 2831 6.845908 AGATATGGCAAGGTTCAGATGTATT 58.154 36.000 0.00 0.00 0.00 1.89
2520 2832 7.293073 AGATATGGCAAGGTTCAGATGTATTT 58.707 34.615 0.00 0.00 0.00 1.40
2521 2833 5.841957 ATGGCAAGGTTCAGATGTATTTC 57.158 39.130 0.00 0.00 0.00 2.17
2522 2834 4.922206 TGGCAAGGTTCAGATGTATTTCT 58.078 39.130 0.00 0.00 0.00 2.52
2523 2835 5.324409 TGGCAAGGTTCAGATGTATTTCTT 58.676 37.500 0.00 0.00 0.00 2.52
2524 2836 5.774690 TGGCAAGGTTCAGATGTATTTCTTT 59.225 36.000 0.00 0.00 0.00 2.52
2525 2837 6.071952 TGGCAAGGTTCAGATGTATTTCTTTC 60.072 38.462 0.00 0.00 0.00 2.62
2526 2838 6.325596 GCAAGGTTCAGATGTATTTCTTTCC 58.674 40.000 0.00 0.00 0.00 3.13
2527 2839 6.625960 GCAAGGTTCAGATGTATTTCTTTCCC 60.626 42.308 0.00 0.00 0.00 3.97
2528 2840 5.186198 AGGTTCAGATGTATTTCTTTCCCG 58.814 41.667 0.00 0.00 0.00 5.14
2529 2841 5.045869 AGGTTCAGATGTATTTCTTTCCCGA 60.046 40.000 0.00 0.00 0.00 5.14
2530 2842 5.823045 GGTTCAGATGTATTTCTTTCCCGAT 59.177 40.000 0.00 0.00 0.00 4.18
2531 2843 6.238484 GGTTCAGATGTATTTCTTTCCCGATG 60.238 42.308 0.00 0.00 0.00 3.84
2532 2844 4.816385 TCAGATGTATTTCTTTCCCGATGC 59.184 41.667 0.00 0.00 0.00 3.91
2533 2845 4.576053 CAGATGTATTTCTTTCCCGATGCA 59.424 41.667 0.00 0.00 0.00 3.96
2534 2846 5.240183 CAGATGTATTTCTTTCCCGATGCAT 59.760 40.000 0.00 0.00 0.00 3.96
2535 2847 5.829924 AGATGTATTTCTTTCCCGATGCATT 59.170 36.000 0.00 0.00 0.00 3.56
2536 2848 5.913137 TGTATTTCTTTCCCGATGCATTT 57.087 34.783 0.00 0.00 0.00 2.32
2537 2849 5.649557 TGTATTTCTTTCCCGATGCATTTG 58.350 37.500 0.00 0.00 0.00 2.32
2538 2850 2.652941 TTCTTTCCCGATGCATTTGC 57.347 45.000 0.00 0.00 42.50 3.68
2539 2851 1.838112 TCTTTCCCGATGCATTTGCT 58.162 45.000 0.00 0.00 42.66 3.91
2540 2852 2.170166 TCTTTCCCGATGCATTTGCTT 58.830 42.857 0.00 0.00 42.66 3.91
2541 2853 2.562298 TCTTTCCCGATGCATTTGCTTT 59.438 40.909 0.00 0.00 42.66 3.51
2542 2854 2.367030 TTCCCGATGCATTTGCTTTG 57.633 45.000 0.00 1.70 42.66 2.77
2543 2855 0.108709 TCCCGATGCATTTGCTTTGC 60.109 50.000 0.00 0.02 42.66 3.68
2550 2862 2.573369 TGCATTTGCTTTGCATTTGGT 58.427 38.095 3.94 0.00 44.73 3.67
2551 2863 2.950309 TGCATTTGCTTTGCATTTGGTT 59.050 36.364 3.94 0.00 44.73 3.67
2552 2864 3.003482 TGCATTTGCTTTGCATTTGGTTC 59.997 39.130 3.94 0.00 44.73 3.62
2553 2865 3.609879 GCATTTGCTTTGCATTTGGTTCC 60.610 43.478 0.00 0.00 38.76 3.62
2554 2866 3.557228 TTTGCTTTGCATTTGGTTCCT 57.443 38.095 0.00 0.00 38.76 3.36
2555 2867 4.679373 TTTGCTTTGCATTTGGTTCCTA 57.321 36.364 0.00 0.00 38.76 2.94
2556 2868 3.658757 TGCTTTGCATTTGGTTCCTAC 57.341 42.857 0.00 0.00 31.71 3.18
2557 2869 2.961741 TGCTTTGCATTTGGTTCCTACA 59.038 40.909 0.00 0.00 31.71 2.74
2558 2870 3.386078 TGCTTTGCATTTGGTTCCTACAA 59.614 39.130 0.00 0.00 31.71 2.41
2559 2871 3.989817 GCTTTGCATTTGGTTCCTACAAG 59.010 43.478 0.00 0.00 0.00 3.16
2560 2872 4.261994 GCTTTGCATTTGGTTCCTACAAGA 60.262 41.667 0.00 0.00 0.00 3.02
2561 2873 5.452078 TTTGCATTTGGTTCCTACAAGAG 57.548 39.130 0.00 0.00 0.00 2.85
2562 2874 4.365514 TGCATTTGGTTCCTACAAGAGA 57.634 40.909 0.00 0.00 0.00 3.10
2563 2875 4.326826 TGCATTTGGTTCCTACAAGAGAG 58.673 43.478 0.00 0.00 0.00 3.20
2564 2876 4.202461 TGCATTTGGTTCCTACAAGAGAGT 60.202 41.667 0.00 0.00 0.00 3.24
2565 2877 4.762251 GCATTTGGTTCCTACAAGAGAGTT 59.238 41.667 0.00 0.00 0.00 3.01
2566 2878 5.241728 GCATTTGGTTCCTACAAGAGAGTTT 59.758 40.000 0.00 0.00 0.00 2.66
2567 2879 6.672147 CATTTGGTTCCTACAAGAGAGTTTG 58.328 40.000 0.00 0.00 0.00 2.93
2568 2880 4.351874 TGGTTCCTACAAGAGAGTTTGG 57.648 45.455 0.00 0.00 32.32 3.28
2569 2881 3.971305 TGGTTCCTACAAGAGAGTTTGGA 59.029 43.478 0.00 0.00 32.32 3.53
2570 2882 4.597507 TGGTTCCTACAAGAGAGTTTGGAT 59.402 41.667 0.00 0.00 32.32 3.41
2571 2883 5.073144 TGGTTCCTACAAGAGAGTTTGGATT 59.927 40.000 0.00 0.00 32.32 3.01
2572 2884 6.271391 TGGTTCCTACAAGAGAGTTTGGATTA 59.729 38.462 0.00 0.00 32.32 1.75
2573 2885 6.819146 GGTTCCTACAAGAGAGTTTGGATTAG 59.181 42.308 0.00 0.00 32.32 1.73
2574 2886 6.546428 TCCTACAAGAGAGTTTGGATTAGG 57.454 41.667 0.00 0.00 30.94 2.69
2575 2887 6.023603 TCCTACAAGAGAGTTTGGATTAGGT 58.976 40.000 0.00 0.00 31.36 3.08
2576 2888 7.186972 TCCTACAAGAGAGTTTGGATTAGGTA 58.813 38.462 0.00 0.00 31.36 3.08
2577 2889 7.676893 TCCTACAAGAGAGTTTGGATTAGGTAA 59.323 37.037 0.00 0.00 31.36 2.85
2578 2890 8.487028 CCTACAAGAGAGTTTGGATTAGGTAAT 58.513 37.037 0.00 0.00 32.32 1.89
2579 2891 9.892130 CTACAAGAGAGTTTGGATTAGGTAATT 57.108 33.333 0.00 0.00 32.32 1.40
2581 2893 9.892130 ACAAGAGAGTTTGGATTAGGTAATTAG 57.108 33.333 0.00 0.00 32.32 1.73
2582 2894 8.831550 CAAGAGAGTTTGGATTAGGTAATTAGC 58.168 37.037 6.56 6.56 0.00 3.09
2583 2895 8.325477 AGAGAGTTTGGATTAGGTAATTAGCT 57.675 34.615 20.22 20.22 37.80 3.32
2584 2896 8.207545 AGAGAGTTTGGATTAGGTAATTAGCTG 58.792 37.037 24.09 0.00 35.39 4.24
2585 2897 7.862675 AGAGTTTGGATTAGGTAATTAGCTGT 58.137 34.615 24.09 14.04 35.39 4.40
2586 2898 8.329502 AGAGTTTGGATTAGGTAATTAGCTGTT 58.670 33.333 24.09 12.79 35.39 3.16
2587 2899 8.879427 AGTTTGGATTAGGTAATTAGCTGTTT 57.121 30.769 24.09 10.57 35.39 2.83
2588 2900 8.957466 AGTTTGGATTAGGTAATTAGCTGTTTC 58.043 33.333 24.09 16.99 35.39 2.78
2589 2901 7.875327 TTGGATTAGGTAATTAGCTGTTTCC 57.125 36.000 24.09 23.19 35.39 3.13
2590 2902 7.208064 TGGATTAGGTAATTAGCTGTTTCCT 57.792 36.000 24.09 10.01 35.39 3.36
2591 2903 7.280356 TGGATTAGGTAATTAGCTGTTTCCTC 58.720 38.462 24.09 12.12 35.39 3.71
2592 2904 7.092623 TGGATTAGGTAATTAGCTGTTTCCTCA 60.093 37.037 24.09 11.65 35.39 3.86
2593 2905 7.442666 GGATTAGGTAATTAGCTGTTTCCTCAG 59.557 40.741 24.09 0.00 38.35 3.35
2594 2906 5.763876 AGGTAATTAGCTGTTTCCTCAGT 57.236 39.130 16.17 0.00 37.70 3.41
2595 2907 6.869206 AGGTAATTAGCTGTTTCCTCAGTA 57.131 37.500 16.17 0.00 37.70 2.74
2596 2908 7.439108 AGGTAATTAGCTGTTTCCTCAGTAT 57.561 36.000 16.17 0.00 37.70 2.12
2597 2909 7.862675 AGGTAATTAGCTGTTTCCTCAGTATT 58.137 34.615 16.17 0.00 37.70 1.89
2598 2910 8.329502 AGGTAATTAGCTGTTTCCTCAGTATTT 58.670 33.333 16.17 0.00 37.70 1.40
2599 2911 8.398665 GGTAATTAGCTGTTTCCTCAGTATTTG 58.601 37.037 7.42 0.00 37.70 2.32
2600 2912 8.947115 GTAATTAGCTGTTTCCTCAGTATTTGT 58.053 33.333 0.00 0.00 37.70 2.83
2601 2913 7.617041 ATTAGCTGTTTCCTCAGTATTTGTC 57.383 36.000 0.00 0.00 37.70 3.18
2602 2914 4.327680 AGCTGTTTCCTCAGTATTTGTCC 58.672 43.478 0.00 0.00 37.70 4.02
2603 2915 3.125316 GCTGTTTCCTCAGTATTTGTCCG 59.875 47.826 0.00 0.00 37.70 4.79
2604 2916 4.566004 CTGTTTCCTCAGTATTTGTCCGA 58.434 43.478 0.00 0.00 0.00 4.55
2605 2917 4.312443 TGTTTCCTCAGTATTTGTCCGAC 58.688 43.478 0.00 0.00 0.00 4.79
2606 2918 2.933495 TCCTCAGTATTTGTCCGACG 57.067 50.000 0.00 0.00 0.00 5.12
2607 2919 2.165167 TCCTCAGTATTTGTCCGACGT 58.835 47.619 0.00 0.00 0.00 4.34
2608 2920 2.163010 TCCTCAGTATTTGTCCGACGTC 59.837 50.000 5.18 5.18 0.00 4.34
2609 2921 2.163815 CCTCAGTATTTGTCCGACGTCT 59.836 50.000 14.70 0.00 0.00 4.18
2610 2922 3.376234 CCTCAGTATTTGTCCGACGTCTA 59.624 47.826 14.70 0.00 0.00 2.59
2611 2923 4.142534 CCTCAGTATTTGTCCGACGTCTAA 60.143 45.833 14.70 0.00 0.00 2.10
2612 2924 4.978186 TCAGTATTTGTCCGACGTCTAAG 58.022 43.478 14.70 2.27 0.00 2.18
2613 2925 4.696877 TCAGTATTTGTCCGACGTCTAAGA 59.303 41.667 14.70 4.84 0.00 2.10
2614 2926 5.181811 TCAGTATTTGTCCGACGTCTAAGAA 59.818 40.000 14.70 3.33 0.00 2.52
2615 2927 5.512082 CAGTATTTGTCCGACGTCTAAGAAG 59.488 44.000 14.70 0.00 0.00 2.85
2616 2928 4.778534 ATTTGTCCGACGTCTAAGAAGA 57.221 40.909 14.70 0.00 0.00 2.87
2617 2929 4.778534 TTTGTCCGACGTCTAAGAAGAT 57.221 40.909 14.70 0.00 33.30 2.40
2618 2930 4.352600 TTGTCCGACGTCTAAGAAGATC 57.647 45.455 14.70 0.00 33.30 2.75
2619 2931 3.607741 TGTCCGACGTCTAAGAAGATCT 58.392 45.455 14.70 0.00 33.30 2.75
2620 2932 3.622163 TGTCCGACGTCTAAGAAGATCTC 59.378 47.826 14.70 0.00 33.30 2.75
2621 2933 3.622163 GTCCGACGTCTAAGAAGATCTCA 59.378 47.826 14.70 0.00 33.30 3.27
2622 2934 3.872182 TCCGACGTCTAAGAAGATCTCAG 59.128 47.826 14.70 0.00 33.30 3.35
2623 2935 3.872182 CCGACGTCTAAGAAGATCTCAGA 59.128 47.826 14.70 0.00 33.30 3.27
2624 2936 4.260456 CCGACGTCTAAGAAGATCTCAGAC 60.260 50.000 14.70 6.22 33.30 3.51
2625 2937 4.330347 CGACGTCTAAGAAGATCTCAGACA 59.670 45.833 14.70 0.00 36.29 3.41
2626 2938 5.163844 CGACGTCTAAGAAGATCTCAGACAA 60.164 44.000 14.70 0.00 36.29 3.18
2627 2939 6.189677 ACGTCTAAGAAGATCTCAGACAAG 57.810 41.667 18.88 10.85 36.29 3.16
2628 2940 5.941058 ACGTCTAAGAAGATCTCAGACAAGA 59.059 40.000 18.88 7.52 36.29 3.02
2629 2941 6.128117 ACGTCTAAGAAGATCTCAGACAAGAC 60.128 42.308 18.88 14.86 36.29 3.01
2630 2942 6.560711 GTCTAAGAAGATCTCAGACAAGACC 58.439 44.000 16.11 1.99 36.48 3.85
2631 2943 6.377146 GTCTAAGAAGATCTCAGACAAGACCT 59.623 42.308 16.11 0.00 36.48 3.85
2632 2944 5.404466 AAGAAGATCTCAGACAAGACCTG 57.596 43.478 0.00 0.00 0.00 4.00
2633 2945 3.195396 AGAAGATCTCAGACAAGACCTGC 59.805 47.826 0.00 0.00 0.00 4.85
2634 2946 1.830477 AGATCTCAGACAAGACCTGCC 59.170 52.381 0.00 0.00 0.00 4.85
2635 2947 1.830477 GATCTCAGACAAGACCTGCCT 59.170 52.381 0.00 0.00 0.00 4.75
2636 2948 1.261480 TCTCAGACAAGACCTGCCTC 58.739 55.000 0.00 0.00 0.00 4.70
2637 2949 1.203112 TCTCAGACAAGACCTGCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
2638 2950 0.972134 TCAGACAAGACCTGCCTCTG 59.028 55.000 0.00 0.00 32.08 3.35
2639 2951 0.673022 CAGACAAGACCTGCCTCTGC 60.673 60.000 0.00 0.00 38.26 4.26
2640 2952 1.376553 GACAAGACCTGCCTCTGCC 60.377 63.158 0.00 0.00 36.33 4.85
2641 2953 1.835927 GACAAGACCTGCCTCTGCCT 61.836 60.000 0.00 0.00 36.33 4.75
2642 2954 1.376942 CAAGACCTGCCTCTGCCTG 60.377 63.158 0.00 0.00 36.33 4.85
2643 2955 1.845205 AAGACCTGCCTCTGCCTGT 60.845 57.895 0.00 0.00 36.33 4.00
2644 2956 0.545309 AAGACCTGCCTCTGCCTGTA 60.545 55.000 0.00 0.00 36.33 2.74
2645 2957 0.545309 AGACCTGCCTCTGCCTGTAA 60.545 55.000 0.00 0.00 36.33 2.41
2646 2958 0.391793 GACCTGCCTCTGCCTGTAAC 60.392 60.000 0.00 0.00 36.33 2.50
2647 2959 1.078143 CCTGCCTCTGCCTGTAACC 60.078 63.158 0.00 0.00 36.33 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 134 2.380410 GCGACGGCTCGTTGTTGAT 61.380 57.895 14.03 0.00 42.55 2.57
529 605 1.956170 CCGTCTACATGCCGATGCC 60.956 63.158 0.00 0.00 36.33 4.40
772 909 2.359975 CGCCGAAAAAGAGCCCCT 60.360 61.111 0.00 0.00 0.00 4.79
802 939 0.943359 GAGCATCTCCAGCCGATTCG 60.943 60.000 0.00 0.00 0.00 3.34
803 940 2.911594 GAGCATCTCCAGCCGATTC 58.088 57.895 0.00 0.00 0.00 2.52
815 952 1.412710 TGGACGGGTCATAAGAGCATC 59.587 52.381 0.75 0.00 43.97 3.91
816 953 1.139058 GTGGACGGGTCATAAGAGCAT 59.861 52.381 0.75 0.00 43.97 3.79
817 954 0.535335 GTGGACGGGTCATAAGAGCA 59.465 55.000 0.75 0.00 43.97 4.26
818 955 0.824759 AGTGGACGGGTCATAAGAGC 59.175 55.000 0.75 0.00 41.49 4.09
819 956 1.137086 CCAGTGGACGGGTCATAAGAG 59.863 57.143 1.68 0.00 0.00 2.85
864 1001 2.593436 CCGCTTTCAACCGGTGGT 60.593 61.111 8.52 0.00 39.67 4.16
872 1009 2.806945 ATCCCAGATTCCGCTTTCAA 57.193 45.000 0.00 0.00 0.00 2.69
881 1018 1.332997 CAGCAAGCGAATCCCAGATTC 59.667 52.381 7.17 7.17 0.00 2.52
997 1152 2.345991 CCGTGGGGTGTTCATCGT 59.654 61.111 0.00 0.00 0.00 3.73
1020 1175 0.588252 CGACACTTGCTGACCCAAAG 59.412 55.000 0.00 0.00 0.00 2.77
1094 1255 1.403493 CGAGTCATACATCTCTGCGC 58.597 55.000 0.00 0.00 0.00 6.09
1160 1321 3.347958 TGAACGCACCAGAACATTTTC 57.652 42.857 0.00 0.00 0.00 2.29
1161 1322 3.552684 CCATGAACGCACCAGAACATTTT 60.553 43.478 0.00 0.00 0.00 1.82
1221 1382 2.578021 ACCACATGTCAATAGCTCCCTT 59.422 45.455 0.00 0.00 0.00 3.95
1224 1385 3.201290 CTCACCACATGTCAATAGCTCC 58.799 50.000 0.00 0.00 0.00 4.70
1312 1473 1.381872 GCAGAGGAGCTCCCAGGTA 60.382 63.158 29.54 0.00 37.41 3.08
1365 1526 9.739276 TTCAAACCATTATTCTCACTGTAATCT 57.261 29.630 0.00 0.00 0.00 2.40
1385 1546 7.280876 TGTCCATCTTATCATACTGCTTCAAAC 59.719 37.037 0.00 0.00 0.00 2.93
1405 1566 3.328931 AGAGTGATCCACTTGTTGTCCAT 59.671 43.478 0.82 0.00 45.44 3.41
1451 1612 1.547372 CCATGTCCCAGCCTTCTTTTG 59.453 52.381 0.00 0.00 0.00 2.44
1452 1613 1.550869 CCCATGTCCCAGCCTTCTTTT 60.551 52.381 0.00 0.00 0.00 2.27
1458 1622 1.384191 GAAACCCATGTCCCAGCCT 59.616 57.895 0.00 0.00 0.00 4.58
1530 1694 1.946768 TGAAGCTCAACCACCTTTTCG 59.053 47.619 0.00 0.00 0.00 3.46
1575 1745 1.963515 GCAACCAAATTCCACAGAGGT 59.036 47.619 0.00 0.00 39.02 3.85
1579 1749 2.153366 GTGGCAACCAAATTCCACAG 57.847 50.000 6.82 0.00 46.09 3.66
1650 1861 4.265073 GGCATTTATTCTGTGGACTGACT 58.735 43.478 0.00 0.00 0.00 3.41
1651 1862 3.063997 CGGCATTTATTCTGTGGACTGAC 59.936 47.826 0.00 0.00 0.00 3.51
1652 1863 3.055458 TCGGCATTTATTCTGTGGACTGA 60.055 43.478 0.00 0.00 0.00 3.41
1655 1866 4.601019 CATTCGGCATTTATTCTGTGGAC 58.399 43.478 0.00 0.00 0.00 4.02
1670 1881 2.268076 AACACCCACTGCATTCGGC 61.268 57.895 0.00 0.00 45.13 5.54
1672 1883 0.518636 CTCAACACCCACTGCATTCG 59.481 55.000 0.00 0.00 0.00 3.34
1686 1897 6.679884 GCAGAAATCTTCATCCATTCCTCAAC 60.680 42.308 0.00 0.00 0.00 3.18
1689 1900 4.277921 GGCAGAAATCTTCATCCATTCCTC 59.722 45.833 0.00 0.00 0.00 3.71
1691 1902 3.320256 GGGCAGAAATCTTCATCCATTCC 59.680 47.826 0.00 0.00 0.00 3.01
1697 1908 4.460382 TGAAACTGGGCAGAAATCTTCATC 59.540 41.667 0.00 0.00 0.00 2.92
1735 1946 1.875576 GCATCCTGAATACCCGCTCAG 60.876 57.143 0.00 0.00 39.06 3.35
1737 1948 0.106708 TGCATCCTGAATACCCGCTC 59.893 55.000 0.00 0.00 0.00 5.03
1739 1950 0.663153 GTTGCATCCTGAATACCCGC 59.337 55.000 0.00 0.00 0.00 6.13
1740 1951 1.308998 GGTTGCATCCTGAATACCCG 58.691 55.000 6.56 0.00 0.00 5.28
1743 1954 3.620488 TCAAGGGTTGCATCCTGAATAC 58.380 45.455 13.47 0.00 34.34 1.89
1744 1955 4.314522 TTCAAGGGTTGCATCCTGAATA 57.685 40.909 13.47 0.00 34.34 1.75
1746 1957 2.673775 TTCAAGGGTTGCATCCTGAA 57.326 45.000 13.47 12.78 34.34 3.02
1747 1958 2.621407 GGATTCAAGGGTTGCATCCTGA 60.621 50.000 13.47 7.60 46.01 3.86
1748 1959 1.753073 GGATTCAAGGGTTGCATCCTG 59.247 52.381 13.47 5.36 46.01 3.86
1749 1960 2.149973 GGATTCAAGGGTTGCATCCT 57.850 50.000 13.47 8.43 46.01 3.24
1751 1962 2.726821 TCAGGATTCAAGGGTTGCATC 58.273 47.619 0.00 0.00 33.38 3.91
1752 1963 2.905415 TCAGGATTCAAGGGTTGCAT 57.095 45.000 0.00 0.00 0.00 3.96
1754 1965 2.893489 AGTTTCAGGATTCAAGGGTTGC 59.107 45.455 0.00 0.00 0.00 4.17
1755 1966 3.305608 GCAGTTTCAGGATTCAAGGGTTG 60.306 47.826 0.00 0.00 0.00 3.77
1756 1967 2.893489 GCAGTTTCAGGATTCAAGGGTT 59.107 45.455 0.00 0.00 0.00 4.11
1757 1968 2.108952 AGCAGTTTCAGGATTCAAGGGT 59.891 45.455 0.00 0.00 0.00 4.34
1758 1969 2.490903 CAGCAGTTTCAGGATTCAAGGG 59.509 50.000 0.00 0.00 0.00 3.95
1760 1971 3.152341 ACCAGCAGTTTCAGGATTCAAG 58.848 45.455 0.00 0.00 0.00 3.02
1761 1972 3.228188 ACCAGCAGTTTCAGGATTCAA 57.772 42.857 0.00 0.00 0.00 2.69
1762 1973 2.957402 ACCAGCAGTTTCAGGATTCA 57.043 45.000 0.00 0.00 0.00 2.57
1772 1983 1.956477 GACATGTGGAAACCAGCAGTT 59.044 47.619 1.15 0.00 41.81 3.16
1773 1984 1.143684 AGACATGTGGAAACCAGCAGT 59.856 47.619 1.15 0.00 32.34 4.40
1774 1985 1.901591 AGACATGTGGAAACCAGCAG 58.098 50.000 1.15 0.00 32.34 4.24
1776 1987 3.068024 TGAAAAGACATGTGGAAACCAGC 59.932 43.478 1.15 0.00 32.34 4.85
1777 1988 4.339247 AGTGAAAAGACATGTGGAAACCAG 59.661 41.667 1.15 0.00 32.34 4.00
1778 1989 4.097741 CAGTGAAAAGACATGTGGAAACCA 59.902 41.667 1.15 0.00 0.00 3.67
1779 1990 4.097892 ACAGTGAAAAGACATGTGGAAACC 59.902 41.667 1.15 0.00 0.00 3.27
1780 1991 5.248870 ACAGTGAAAAGACATGTGGAAAC 57.751 39.130 1.15 0.00 0.00 2.78
1781 1992 5.417266 TCAACAGTGAAAAGACATGTGGAAA 59.583 36.000 1.15 0.00 0.00 3.13
1782 1993 4.946772 TCAACAGTGAAAAGACATGTGGAA 59.053 37.500 1.15 0.00 0.00 3.53
1808 2047 4.088634 TGTTGCAGGAGCCAAATAAGAAT 58.911 39.130 0.00 0.00 41.13 2.40
1812 2051 3.006752 CCTTTGTTGCAGGAGCCAAATAA 59.993 43.478 0.00 0.00 41.13 1.40
1814 2053 1.345415 CCTTTGTTGCAGGAGCCAAAT 59.655 47.619 0.00 0.00 41.13 2.32
1822 2061 0.963962 AGACATGCCTTTGTTGCAGG 59.036 50.000 0.00 0.00 45.38 4.85
1823 2062 2.806608 AAGACATGCCTTTGTTGCAG 57.193 45.000 0.00 0.00 42.92 4.41
1824 2063 3.132646 AGAAAAGACATGCCTTTGTTGCA 59.867 39.130 7.84 0.00 43.97 4.08
1825 2064 3.492011 CAGAAAAGACATGCCTTTGTTGC 59.508 43.478 7.84 0.00 36.57 4.17
1829 2068 6.680810 TGATAACAGAAAAGACATGCCTTTG 58.319 36.000 7.84 0.00 36.57 2.77
1843 2082 4.321156 GCATGCACCTTGTTGATAACAGAA 60.321 41.667 14.21 0.00 43.27 3.02
1847 2086 2.493278 AGGCATGCACCTTGTTGATAAC 59.507 45.455 21.36 0.00 36.28 1.89
1967 2238 7.715265 AATCTCGTAGCACATTATAAACAGG 57.285 36.000 0.00 0.00 0.00 4.00
2031 2302 4.734854 CACAAATTGACCAGAACAAGTTCG 59.265 41.667 0.00 3.27 43.97 3.95
2040 2311 2.315176 CAACCCCACAAATTGACCAGA 58.685 47.619 0.00 0.00 0.00 3.86
2041 2312 2.038659 ACAACCCCACAAATTGACCAG 58.961 47.619 0.00 0.00 0.00 4.00
2057 2328 4.434713 AACACAAGGTCAGTCAAACAAC 57.565 40.909 0.00 0.00 0.00 3.32
2071 2350 7.062605 GCATGGAAATATGAACAGAAACACAAG 59.937 37.037 0.00 0.00 0.00 3.16
2103 2391 1.059098 ATGAAGTGCCCAGTCAGACA 58.941 50.000 2.66 0.00 0.00 3.41
2109 2397 2.107204 ACTTGAGAATGAAGTGCCCAGT 59.893 45.455 0.00 0.00 42.25 4.00
2117 2405 7.605691 ACAGGACATTTAGACTTGAGAATGAAG 59.394 37.037 0.00 0.00 34.61 3.02
2118 2406 7.388776 CACAGGACATTTAGACTTGAGAATGAA 59.611 37.037 0.00 0.00 34.47 2.57
2158 2450 8.347771 CAAACTCATTCATGTCTTCTCTTTTCA 58.652 33.333 0.00 0.00 0.00 2.69
2159 2451 7.806960 CCAAACTCATTCATGTCTTCTCTTTTC 59.193 37.037 0.00 0.00 0.00 2.29
2233 2535 6.494491 AGTGACATTTCTGGAATCCAAATTGA 59.506 34.615 2.61 0.00 30.80 2.57
2255 2557 6.761714 GGTACAGATAAAGTTGGGACATAGTG 59.238 42.308 0.00 0.00 39.30 2.74
2360 2672 8.704849 TCCAATTTGTTTTCCTTATTCAGAGA 57.295 30.769 0.00 0.00 0.00 3.10
2371 2683 5.526846 TGTGCATCTTTCCAATTTGTTTTCC 59.473 36.000 0.00 0.00 0.00 3.13
2380 2692 5.653330 TGATACACATGTGCATCTTTCCAAT 59.347 36.000 30.15 10.56 35.06 3.16
2390 2702 6.827762 TCAATAGGAAATGATACACATGTGCA 59.172 34.615 25.68 14.10 37.08 4.57
2407 2719 8.465201 CGATCATATTCATCTGAGTCAATAGGA 58.535 37.037 0.00 0.00 0.00 2.94
2483 2795 4.219264 TGCCATATCTTGTGACACATCA 57.781 40.909 9.55 0.00 0.00 3.07
2498 2810 6.662755 AGAAATACATCTGAACCTTGCCATA 58.337 36.000 0.00 0.00 0.00 2.74
2499 2811 5.513233 AGAAATACATCTGAACCTTGCCAT 58.487 37.500 0.00 0.00 0.00 4.40
2500 2812 4.922206 AGAAATACATCTGAACCTTGCCA 58.078 39.130 0.00 0.00 0.00 4.92
2501 2813 5.904362 AAGAAATACATCTGAACCTTGCC 57.096 39.130 0.00 0.00 0.00 4.52
2502 2814 6.325596 GGAAAGAAATACATCTGAACCTTGC 58.674 40.000 0.00 0.00 0.00 4.01
2503 2815 6.403636 CGGGAAAGAAATACATCTGAACCTTG 60.404 42.308 0.00 0.00 0.00 3.61
2504 2816 5.648092 CGGGAAAGAAATACATCTGAACCTT 59.352 40.000 0.00 0.00 0.00 3.50
2505 2817 5.045869 TCGGGAAAGAAATACATCTGAACCT 60.046 40.000 0.00 0.00 0.00 3.50
2506 2818 5.183228 TCGGGAAAGAAATACATCTGAACC 58.817 41.667 0.00 0.00 0.00 3.62
2507 2819 6.719365 CATCGGGAAAGAAATACATCTGAAC 58.281 40.000 0.00 0.00 0.00 3.18
2508 2820 5.296780 GCATCGGGAAAGAAATACATCTGAA 59.703 40.000 0.00 0.00 0.00 3.02
2509 2821 4.816385 GCATCGGGAAAGAAATACATCTGA 59.184 41.667 0.00 0.00 0.00 3.27
2510 2822 4.576053 TGCATCGGGAAAGAAATACATCTG 59.424 41.667 0.00 0.00 0.00 2.90
2511 2823 4.780815 TGCATCGGGAAAGAAATACATCT 58.219 39.130 0.00 0.00 0.00 2.90
2512 2824 5.695851 ATGCATCGGGAAAGAAATACATC 57.304 39.130 0.00 0.00 0.00 3.06
2513 2825 6.275335 CAAATGCATCGGGAAAGAAATACAT 58.725 36.000 0.00 0.00 0.00 2.29
2514 2826 5.649557 CAAATGCATCGGGAAAGAAATACA 58.350 37.500 0.00 0.00 0.00 2.29
2515 2827 4.504097 GCAAATGCATCGGGAAAGAAATAC 59.496 41.667 0.00 0.00 41.59 1.89
2516 2828 4.402155 AGCAAATGCATCGGGAAAGAAATA 59.598 37.500 8.28 0.00 45.16 1.40
2517 2829 3.196254 AGCAAATGCATCGGGAAAGAAAT 59.804 39.130 8.28 0.00 45.16 2.17
2518 2830 2.562298 AGCAAATGCATCGGGAAAGAAA 59.438 40.909 8.28 0.00 45.16 2.52
2519 2831 2.170166 AGCAAATGCATCGGGAAAGAA 58.830 42.857 8.28 0.00 45.16 2.52
2520 2832 1.838112 AGCAAATGCATCGGGAAAGA 58.162 45.000 8.28 0.00 45.16 2.52
2521 2833 2.660189 AAGCAAATGCATCGGGAAAG 57.340 45.000 8.28 0.00 45.16 2.62
2522 2834 2.686235 CAAAGCAAATGCATCGGGAAA 58.314 42.857 8.28 0.00 45.16 3.13
2523 2835 1.672441 GCAAAGCAAATGCATCGGGAA 60.672 47.619 8.28 0.00 45.16 3.97
2524 2836 0.108709 GCAAAGCAAATGCATCGGGA 60.109 50.000 8.28 0.00 45.16 5.14
2525 2837 2.375981 GCAAAGCAAATGCATCGGG 58.624 52.632 8.28 0.00 45.16 5.14
2531 2843 3.557508 GAACCAAATGCAAAGCAAATGC 58.442 40.909 0.00 0.00 43.62 3.56
2532 2844 3.816523 AGGAACCAAATGCAAAGCAAATG 59.183 39.130 0.00 0.00 43.62 2.32
2533 2845 4.089408 AGGAACCAAATGCAAAGCAAAT 57.911 36.364 0.00 0.00 43.62 2.32
2534 2846 3.557228 AGGAACCAAATGCAAAGCAAA 57.443 38.095 0.00 0.00 43.62 3.68
2535 2847 3.386078 TGTAGGAACCAAATGCAAAGCAA 59.614 39.130 0.00 0.00 43.62 3.91
2536 2848 2.961741 TGTAGGAACCAAATGCAAAGCA 59.038 40.909 0.00 0.00 44.86 3.91
2537 2849 3.658757 TGTAGGAACCAAATGCAAAGC 57.341 42.857 0.00 0.00 0.00 3.51
2538 2850 5.241506 TCTCTTGTAGGAACCAAATGCAAAG 59.758 40.000 0.00 0.00 0.00 2.77
2539 2851 5.136828 TCTCTTGTAGGAACCAAATGCAAA 58.863 37.500 0.00 0.00 0.00 3.68
2540 2852 4.724399 TCTCTTGTAGGAACCAAATGCAA 58.276 39.130 0.00 0.00 0.00 4.08
2541 2853 4.202461 ACTCTCTTGTAGGAACCAAATGCA 60.202 41.667 0.00 0.00 0.00 3.96
2542 2854 4.327680 ACTCTCTTGTAGGAACCAAATGC 58.672 43.478 0.00 0.00 0.00 3.56
2543 2855 6.294176 CCAAACTCTCTTGTAGGAACCAAATG 60.294 42.308 0.00 0.00 0.00 2.32
2544 2856 5.770162 CCAAACTCTCTTGTAGGAACCAAAT 59.230 40.000 0.00 0.00 0.00 2.32
2545 2857 5.104277 TCCAAACTCTCTTGTAGGAACCAAA 60.104 40.000 0.00 0.00 0.00 3.28
2546 2858 4.410883 TCCAAACTCTCTTGTAGGAACCAA 59.589 41.667 0.00 0.00 0.00 3.67
2547 2859 3.971305 TCCAAACTCTCTTGTAGGAACCA 59.029 43.478 0.00 0.00 0.00 3.67
2548 2860 4.618920 TCCAAACTCTCTTGTAGGAACC 57.381 45.455 0.00 0.00 0.00 3.62
2549 2861 6.819146 CCTAATCCAAACTCTCTTGTAGGAAC 59.181 42.308 0.00 0.00 29.87 3.62
2550 2862 6.500751 ACCTAATCCAAACTCTCTTGTAGGAA 59.499 38.462 0.00 0.00 31.59 3.36
2551 2863 6.023603 ACCTAATCCAAACTCTCTTGTAGGA 58.976 40.000 0.00 0.00 31.59 2.94
2552 2864 6.301169 ACCTAATCCAAACTCTCTTGTAGG 57.699 41.667 0.00 0.00 32.60 3.18
2553 2865 9.892130 AATTACCTAATCCAAACTCTCTTGTAG 57.108 33.333 0.00 0.00 0.00 2.74
2555 2867 9.892130 CTAATTACCTAATCCAAACTCTCTTGT 57.108 33.333 0.00 0.00 0.00 3.16
2556 2868 8.831550 GCTAATTACCTAATCCAAACTCTCTTG 58.168 37.037 0.00 0.00 0.00 3.02
2557 2869 8.773216 AGCTAATTACCTAATCCAAACTCTCTT 58.227 33.333 0.00 0.00 0.00 2.85
2558 2870 8.207545 CAGCTAATTACCTAATCCAAACTCTCT 58.792 37.037 0.00 0.00 0.00 3.10
2559 2871 7.988028 ACAGCTAATTACCTAATCCAAACTCTC 59.012 37.037 0.00 0.00 0.00 3.20
2560 2872 7.862675 ACAGCTAATTACCTAATCCAAACTCT 58.137 34.615 0.00 0.00 0.00 3.24
2561 2873 8.507524 AACAGCTAATTACCTAATCCAAACTC 57.492 34.615 0.00 0.00 0.00 3.01
2562 2874 8.879427 AAACAGCTAATTACCTAATCCAAACT 57.121 30.769 0.00 0.00 0.00 2.66
2563 2875 8.188799 GGAAACAGCTAATTACCTAATCCAAAC 58.811 37.037 0.00 0.00 0.00 2.93
2564 2876 8.113462 AGGAAACAGCTAATTACCTAATCCAAA 58.887 33.333 0.00 0.00 0.00 3.28
2565 2877 7.639378 AGGAAACAGCTAATTACCTAATCCAA 58.361 34.615 0.00 0.00 0.00 3.53
2566 2878 7.092623 TGAGGAAACAGCTAATTACCTAATCCA 60.093 37.037 0.00 0.00 0.00 3.41
2567 2879 7.280356 TGAGGAAACAGCTAATTACCTAATCC 58.720 38.462 0.00 0.00 0.00 3.01
2568 2880 7.988028 ACTGAGGAAACAGCTAATTACCTAATC 59.012 37.037 0.00 0.00 41.06 1.75
2569 2881 7.862675 ACTGAGGAAACAGCTAATTACCTAAT 58.137 34.615 0.00 0.00 41.06 1.73
2570 2882 7.253905 ACTGAGGAAACAGCTAATTACCTAA 57.746 36.000 0.00 0.00 41.06 2.69
2571 2883 6.869206 ACTGAGGAAACAGCTAATTACCTA 57.131 37.500 0.00 0.00 41.06 3.08
2572 2884 5.763876 ACTGAGGAAACAGCTAATTACCT 57.236 39.130 0.00 0.00 41.06 3.08
2573 2885 8.398665 CAAATACTGAGGAAACAGCTAATTACC 58.601 37.037 0.00 0.00 41.06 2.85
2574 2886 8.947115 ACAAATACTGAGGAAACAGCTAATTAC 58.053 33.333 0.00 0.00 41.06 1.89
2575 2887 9.162764 GACAAATACTGAGGAAACAGCTAATTA 57.837 33.333 0.00 0.00 41.06 1.40
2576 2888 7.121315 GGACAAATACTGAGGAAACAGCTAATT 59.879 37.037 0.00 0.00 41.06 1.40
2577 2889 6.599638 GGACAAATACTGAGGAAACAGCTAAT 59.400 38.462 0.00 0.00 41.06 1.73
2578 2890 5.938125 GGACAAATACTGAGGAAACAGCTAA 59.062 40.000 0.00 0.00 41.06 3.09
2579 2891 5.488341 GGACAAATACTGAGGAAACAGCTA 58.512 41.667 0.00 0.00 41.06 3.32
2580 2892 4.327680 GGACAAATACTGAGGAAACAGCT 58.672 43.478 0.00 0.00 41.06 4.24
2581 2893 3.125316 CGGACAAATACTGAGGAAACAGC 59.875 47.826 0.00 0.00 41.06 4.40
2582 2894 4.389077 GTCGGACAAATACTGAGGAAACAG 59.611 45.833 2.62 0.00 42.78 3.16
2583 2895 4.312443 GTCGGACAAATACTGAGGAAACA 58.688 43.478 2.62 0.00 0.00 2.83
2584 2896 3.367025 CGTCGGACAAATACTGAGGAAAC 59.633 47.826 9.10 0.00 32.45 2.78
2585 2897 3.006110 ACGTCGGACAAATACTGAGGAAA 59.994 43.478 9.10 0.00 34.15 3.13
2586 2898 2.559668 ACGTCGGACAAATACTGAGGAA 59.440 45.455 9.10 0.00 34.15 3.36
2587 2899 2.163010 GACGTCGGACAAATACTGAGGA 59.837 50.000 9.10 0.00 34.15 3.71
2588 2900 2.163815 AGACGTCGGACAAATACTGAGG 59.836 50.000 10.46 0.00 35.50 3.86
2589 2901 3.489180 AGACGTCGGACAAATACTGAG 57.511 47.619 10.46 0.00 0.00 3.35
2590 2902 4.696877 TCTTAGACGTCGGACAAATACTGA 59.303 41.667 10.46 0.00 0.00 3.41
2591 2903 4.978186 TCTTAGACGTCGGACAAATACTG 58.022 43.478 10.46 0.00 0.00 2.74
2592 2904 5.413833 TCTTCTTAGACGTCGGACAAATACT 59.586 40.000 10.46 2.53 0.00 2.12
2593 2905 5.634896 TCTTCTTAGACGTCGGACAAATAC 58.365 41.667 10.46 0.00 0.00 1.89
2594 2906 5.885230 TCTTCTTAGACGTCGGACAAATA 57.115 39.130 10.46 0.00 0.00 1.40
2595 2907 4.778534 TCTTCTTAGACGTCGGACAAAT 57.221 40.909 10.46 0.00 0.00 2.32
2596 2908 4.458295 AGATCTTCTTAGACGTCGGACAAA 59.542 41.667 10.46 1.88 31.99 2.83
2597 2909 4.008330 AGATCTTCTTAGACGTCGGACAA 58.992 43.478 10.46 2.56 31.99 3.18
2598 2910 3.607741 AGATCTTCTTAGACGTCGGACA 58.392 45.455 10.46 0.56 31.99 4.02
2599 2911 3.622163 TGAGATCTTCTTAGACGTCGGAC 59.378 47.826 10.46 0.00 31.99 4.79
2600 2912 3.870274 TGAGATCTTCTTAGACGTCGGA 58.130 45.455 10.46 7.34 31.99 4.55
2601 2913 3.872182 TCTGAGATCTTCTTAGACGTCGG 59.128 47.826 10.46 4.94 34.68 4.79
2602 2914 4.828704 GTCTGAGATCTTCTTAGACGTCG 58.171 47.826 10.46 0.00 45.76 5.12
2607 2919 6.376864 CAGGTCTTGTCTGAGATCTTCTTAGA 59.623 42.308 0.00 0.00 36.87 2.10
2608 2920 6.563422 CAGGTCTTGTCTGAGATCTTCTTAG 58.437 44.000 0.00 0.00 34.93 2.18
2609 2921 5.105554 GCAGGTCTTGTCTGAGATCTTCTTA 60.106 44.000 0.00 0.00 34.93 2.10
2610 2922 4.322650 GCAGGTCTTGTCTGAGATCTTCTT 60.323 45.833 0.00 0.00 34.93 2.52
2611 2923 3.195396 GCAGGTCTTGTCTGAGATCTTCT 59.805 47.826 0.00 0.00 34.93 2.85
2612 2924 3.520569 GCAGGTCTTGTCTGAGATCTTC 58.479 50.000 0.00 0.00 34.93 2.87
2613 2925 2.235898 GGCAGGTCTTGTCTGAGATCTT 59.764 50.000 0.00 0.00 34.93 2.40
2614 2926 1.830477 GGCAGGTCTTGTCTGAGATCT 59.170 52.381 0.00 0.00 37.61 2.75
2615 2927 1.830477 AGGCAGGTCTTGTCTGAGATC 59.170 52.381 0.00 0.00 41.13 2.75
2616 2928 1.830477 GAGGCAGGTCTTGTCTGAGAT 59.170 52.381 0.00 0.00 43.22 2.75
2617 2929 1.203112 AGAGGCAGGTCTTGTCTGAGA 60.203 52.381 0.00 0.00 43.22 3.27
2618 2930 1.067000 CAGAGGCAGGTCTTGTCTGAG 60.067 57.143 0.00 0.00 43.22 3.35
2619 2931 0.972134 CAGAGGCAGGTCTTGTCTGA 59.028 55.000 0.00 0.00 43.22 3.27
2620 2932 0.673022 GCAGAGGCAGGTCTTGTCTG 60.673 60.000 0.00 0.00 43.22 3.51
2621 2933 1.676384 GCAGAGGCAGGTCTTGTCT 59.324 57.895 0.00 0.00 46.67 3.41
2622 2934 1.376553 GGCAGAGGCAGGTCTTGTC 60.377 63.158 0.00 0.00 43.71 3.18
2623 2935 1.845205 AGGCAGAGGCAGGTCTTGT 60.845 57.895 0.00 0.00 43.71 3.16
2624 2936 1.376942 CAGGCAGAGGCAGGTCTTG 60.377 63.158 0.00 0.00 43.71 3.02
2625 2937 0.545309 TACAGGCAGAGGCAGGTCTT 60.545 55.000 0.00 0.00 43.71 3.01
2626 2938 0.545309 TTACAGGCAGAGGCAGGTCT 60.545 55.000 0.00 0.00 43.71 3.85
2627 2939 0.391793 GTTACAGGCAGAGGCAGGTC 60.392 60.000 0.00 0.00 43.71 3.85
2628 2940 1.679898 GTTACAGGCAGAGGCAGGT 59.320 57.895 0.00 0.00 43.71 4.00
2629 2941 1.078143 GGTTACAGGCAGAGGCAGG 60.078 63.158 0.00 0.00 43.71 4.85
2630 2942 4.625800 GGTTACAGGCAGAGGCAG 57.374 61.111 0.00 0.00 43.71 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.