Multiple sequence alignment - TraesCS7D01G004100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G004100 chr7D 100.000 4612 0 0 1 4612 2246106 2241495 0.000000e+00 8517.0
1 TraesCS7D01G004100 chr7A 85.848 1816 153 61 2811 4590 1850073 1848326 0.000000e+00 1834.0
2 TraesCS7D01G004100 chr7A 84.466 721 85 19 1938 2644 1850918 1850211 0.000000e+00 686.0
3 TraesCS7D01G004100 chr7A 83.623 806 53 35 798 1551 1852343 1851565 0.000000e+00 684.0
4 TraesCS7D01G004100 chr7A 90.000 310 21 6 4277 4577 58140102 58139794 4.330000e-105 392.0
5 TraesCS7D01G004100 chr7A 89.071 183 17 2 1610 1790 1851441 1851260 1.670000e-54 224.0
6 TraesCS7D01G004100 chr4A 86.196 1246 110 29 2808 4013 742375021 742376244 0.000000e+00 1291.0
7 TraesCS7D01G004100 chr4A 90.807 533 43 5 2116 2644 742374354 742374884 0.000000e+00 708.0
8 TraesCS7D01G004100 chr4A 82.470 656 61 27 1302 1907 742373590 742374241 4.090000e-145 525.0
9 TraesCS7D01G004100 chr4A 87.031 293 19 9 1014 1303 742373288 742373564 3.460000e-81 313.0
10 TraesCS7D01G004100 chr4A 85.075 134 12 5 3 128 742371623 742371756 3.740000e-26 130.0
11 TraesCS7D01G004100 chrUn 90.323 310 20 6 4277 4577 291659550 291659242 9.300000e-107 398.0
12 TraesCS7D01G004100 chrUn 89.677 310 22 6 4277 4577 408262868 408262560 2.010000e-103 387.0
13 TraesCS7D01G004100 chrUn 89.355 310 23 6 4277 4577 406910159 406910467 9.360000e-102 381.0
14 TraesCS7D01G004100 chrUn 78.662 553 75 22 275 790 129566943 129566397 1.240000e-85 327.0
15 TraesCS7D01G004100 chrUn 85.714 91 13 0 169 259 89396767 89396857 3.800000e-16 97.1
16 TraesCS7D01G004100 chr4B 90.323 310 20 6 4277 4577 273362821 273363129 9.300000e-107 398.0
17 TraesCS7D01G004100 chr4B 86.813 91 12 0 169 259 636710333 636710423 8.160000e-18 102.0
18 TraesCS7D01G004100 chr1B 90.000 310 21 6 4277 4577 73711383 73711691 4.330000e-105 392.0
19 TraesCS7D01G004100 chr1B 90.000 310 21 6 4277 4577 119304554 119304862 4.330000e-105 392.0
20 TraesCS7D01G004100 chr1B 85.870 92 13 0 169 260 55336047 55335956 1.060000e-16 99.0
21 TraesCS7D01G004100 chr1A 89.677 310 21 7 4277 4577 12487019 12486712 7.240000e-103 385.0
22 TraesCS7D01G004100 chr5D 80.984 447 64 14 275 705 141425217 141425658 7.390000e-88 335.0
23 TraesCS7D01G004100 chr2D 80.761 447 70 9 274 705 625195738 625195293 7.390000e-88 335.0
24 TraesCS7D01G004100 chr2D 85.000 300 43 2 408 705 489046152 489045853 2.090000e-78 303.0
25 TraesCS7D01G004100 chr2D 87.912 91 11 0 169 259 196143438 196143348 1.750000e-19 108.0
26 TraesCS7D01G004100 chr1D 81.818 407 48 12 408 790 288837950 288838354 7.450000e-83 318.0
27 TraesCS7D01G004100 chr1D 80.000 445 72 10 274 705 303021508 303021068 3.460000e-81 313.0
28 TraesCS7D01G004100 chr1D 85.556 90 11 2 168 256 15323452 15323540 4.910000e-15 93.5
29 TraesCS7D01G004100 chr7B 85.714 301 40 3 408 705 18214130 18214430 9.630000e-82 315.0
30 TraesCS7D01G004100 chr7B 79.078 282 35 10 531 790 96583827 96584106 6.130000e-39 172.0
31 TraesCS7D01G004100 chr5A 85.714 301 37 6 408 705 222610320 222610023 3.460000e-81 313.0
32 TraesCS7D01G004100 chr5A 87.952 83 10 0 169 251 10916010 10916092 1.060000e-16 99.0
33 TraesCS7D01G004100 chr5A 83.696 92 11 2 24 112 608938265 608938175 2.960000e-12 84.2
34 TraesCS7D01G004100 chr2B 85.714 294 39 3 406 697 157690707 157690999 1.610000e-79 307.0
35 TraesCS7D01G004100 chr5B 88.506 87 10 0 168 254 560038513 560038427 6.310000e-19 106.0
36 TraesCS7D01G004100 chr6D 88.095 84 8 2 168 250 407181446 407181364 1.060000e-16 99.0
37 TraesCS7D01G004100 chr4D 86.022 93 12 1 164 256 234381193 234381284 1.060000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G004100 chr7D 2241495 2246106 4611 True 8517.0 8517 100.0000 1 4612 1 chr7D.!!$R1 4611
1 TraesCS7D01G004100 chr7A 1848326 1852343 4017 True 857.0 1834 85.7520 798 4590 4 chr7A.!!$R2 3792
2 TraesCS7D01G004100 chr4A 742371623 742376244 4621 False 593.4 1291 86.3158 3 4013 5 chr4A.!!$F1 4010
3 TraesCS7D01G004100 chrUn 129566397 129566943 546 True 327.0 327 78.6620 275 790 1 chrUn.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 1640 0.103026 TCGGACGCTTCATCCATCTG 59.897 55.0 0.0 0.0 35.83 2.90 F
1944 3074 0.039618 AATAACACCAGGCCCCACTG 59.960 55.0 0.0 0.0 38.21 3.66 F
2820 4007 0.178981 AAGTTCTGCCATGTGTGCCT 60.179 50.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 3743 0.035739 AGGCGACCACATTAAACGGT 59.964 50.0 0.00 0.0 35.12 4.83 R
2969 4156 0.034186 CCCAACCCATGAAGCAGCTA 60.034 55.0 0.00 0.0 0.00 3.32 R
3866 5095 0.249120 TGGTGAGGGTACAATCAGCG 59.751 55.0 18.24 0.0 43.73 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.841919 ACTGATGAGGATGGTGATGCA 59.158 47.619 0.00 0.00 0.00 3.96
52 53 2.219458 CTGATGAGGATGGTGATGCAC 58.781 52.381 0.00 0.00 0.00 4.57
58 59 2.169352 GAGGATGGTGATGCACAGTACT 59.831 50.000 0.00 0.00 35.86 2.73
73 74 2.862536 CAGTACTGCGAATCTGTGATGG 59.137 50.000 10.54 0.00 0.00 3.51
75 76 2.996249 ACTGCGAATCTGTGATGGAT 57.004 45.000 0.00 0.00 0.00 3.41
76 77 2.558378 ACTGCGAATCTGTGATGGATG 58.442 47.619 0.00 0.00 0.00 3.51
77 78 2.169144 ACTGCGAATCTGTGATGGATGA 59.831 45.455 0.00 0.00 0.00 2.92
78 79 3.200483 CTGCGAATCTGTGATGGATGAA 58.800 45.455 0.00 0.00 0.00 2.57
83 87 4.025061 CGAATCTGTGATGGATGAAGCTTC 60.025 45.833 19.89 19.89 0.00 3.86
86 90 3.265221 TCTGTGATGGATGAAGCTTCCTT 59.735 43.478 23.42 11.20 34.17 3.36
93 97 4.012374 TGGATGAAGCTTCCTTGATCAAC 58.988 43.478 23.42 8.45 41.64 3.18
104 108 1.329906 CTTGATCAACGCATGGAGCTC 59.670 52.381 4.71 4.71 42.61 4.09
131 140 4.870123 TTTTGTGGGTCAATGGATGAAG 57.130 40.909 0.00 0.00 40.50 3.02
132 141 1.838112 TGTGGGTCAATGGATGAAGC 58.162 50.000 0.00 0.00 40.50 3.86
133 142 1.355381 TGTGGGTCAATGGATGAAGCT 59.645 47.619 0.00 0.00 40.50 3.74
134 143 2.575735 TGTGGGTCAATGGATGAAGCTA 59.424 45.455 0.00 0.00 40.50 3.32
135 144 3.202818 TGTGGGTCAATGGATGAAGCTAT 59.797 43.478 0.00 0.00 40.50 2.97
136 145 3.817647 GTGGGTCAATGGATGAAGCTATC 59.182 47.826 0.00 0.00 40.50 2.08
137 146 3.718434 TGGGTCAATGGATGAAGCTATCT 59.282 43.478 0.00 0.00 40.50 1.98
138 147 4.166725 TGGGTCAATGGATGAAGCTATCTT 59.833 41.667 0.00 0.00 40.50 2.40
139 148 5.136105 GGGTCAATGGATGAAGCTATCTTT 58.864 41.667 0.00 0.00 40.50 2.52
140 149 5.595952 GGGTCAATGGATGAAGCTATCTTTT 59.404 40.000 0.00 0.00 40.50 2.27
141 150 6.097412 GGGTCAATGGATGAAGCTATCTTTTT 59.903 38.462 0.00 0.00 40.50 1.94
142 151 6.976925 GGTCAATGGATGAAGCTATCTTTTTG 59.023 38.462 0.00 0.00 40.50 2.44
143 152 7.363268 GGTCAATGGATGAAGCTATCTTTTTGT 60.363 37.037 0.00 0.00 40.50 2.83
144 153 7.487189 GTCAATGGATGAAGCTATCTTTTTGTG 59.513 37.037 0.00 0.00 40.50 3.33
145 154 5.314923 TGGATGAAGCTATCTTTTTGTGC 57.685 39.130 0.00 0.00 31.48 4.57
146 155 4.766373 TGGATGAAGCTATCTTTTTGTGCA 59.234 37.500 0.00 0.00 31.48 4.57
147 156 5.419788 TGGATGAAGCTATCTTTTTGTGCAT 59.580 36.000 0.00 0.00 31.48 3.96
148 157 6.602803 TGGATGAAGCTATCTTTTTGTGCATA 59.397 34.615 0.00 0.00 31.48 3.14
149 158 7.122501 TGGATGAAGCTATCTTTTTGTGCATAA 59.877 33.333 0.00 0.00 31.48 1.90
150 159 8.139989 GGATGAAGCTATCTTTTTGTGCATAAT 58.860 33.333 0.00 0.00 31.48 1.28
151 160 9.178427 GATGAAGCTATCTTTTTGTGCATAATC 57.822 33.333 0.00 0.00 31.48 1.75
152 161 8.054152 TGAAGCTATCTTTTTGTGCATAATCA 57.946 30.769 0.00 0.00 31.48 2.57
153 162 8.522003 TGAAGCTATCTTTTTGTGCATAATCAA 58.478 29.630 0.00 0.00 31.48 2.57
154 163 8.693542 AAGCTATCTTTTTGTGCATAATCAAC 57.306 30.769 0.00 0.00 0.00 3.18
155 164 7.829725 AGCTATCTTTTTGTGCATAATCAACA 58.170 30.769 0.00 0.00 0.00 3.33
156 165 8.306038 AGCTATCTTTTTGTGCATAATCAACAA 58.694 29.630 0.00 0.00 0.00 2.83
157 166 8.924691 GCTATCTTTTTGTGCATAATCAACAAA 58.075 29.630 0.00 0.00 0.00 2.83
159 168 7.176285 TCTTTTTGTGCATAATCAACAAAGC 57.824 32.000 10.68 0.00 32.85 3.51
160 169 6.985645 TCTTTTTGTGCATAATCAACAAAGCT 59.014 30.769 10.68 0.00 32.85 3.74
161 170 7.495279 TCTTTTTGTGCATAATCAACAAAGCTT 59.505 29.630 10.68 0.00 32.85 3.74
162 171 7.551035 TTTTGTGCATAATCAACAAAGCTTT 57.449 28.000 5.69 5.69 32.85 3.51
163 172 8.654230 TTTTGTGCATAATCAACAAAGCTTTA 57.346 26.923 12.25 0.00 32.85 1.85
164 173 8.830201 TTTGTGCATAATCAACAAAGCTTTAT 57.170 26.923 12.25 0.00 0.00 1.40
165 174 9.920133 TTTGTGCATAATCAACAAAGCTTTATA 57.080 25.926 12.25 0.00 0.00 0.98
166 175 8.909708 TGTGCATAATCAACAAAGCTTTATAC 57.090 30.769 12.25 0.00 0.00 1.47
167 176 7.696035 TGTGCATAATCAACAAAGCTTTATACG 59.304 33.333 12.25 1.75 0.00 3.06
168 177 7.696453 GTGCATAATCAACAAAGCTTTATACGT 59.304 33.333 12.25 2.46 0.00 3.57
169 178 8.884726 TGCATAATCAACAAAGCTTTATACGTA 58.115 29.630 12.25 0.00 0.00 3.57
170 179 9.155053 GCATAATCAACAAAGCTTTATACGTAC 57.845 33.333 12.25 0.00 0.00 3.67
173 182 6.956299 TCAACAAAGCTTTATACGTACTCC 57.044 37.500 12.25 0.00 0.00 3.85
174 183 5.870978 TCAACAAAGCTTTATACGTACTCCC 59.129 40.000 12.25 0.00 0.00 4.30
175 184 5.672421 ACAAAGCTTTATACGTACTCCCT 57.328 39.130 12.25 0.00 0.00 4.20
176 185 5.658468 ACAAAGCTTTATACGTACTCCCTC 58.342 41.667 12.25 0.00 0.00 4.30
177 186 5.421374 ACAAAGCTTTATACGTACTCCCTCT 59.579 40.000 12.25 0.00 0.00 3.69
178 187 5.517322 AAGCTTTATACGTACTCCCTCTG 57.483 43.478 0.00 0.00 0.00 3.35
179 188 4.534797 AGCTTTATACGTACTCCCTCTGT 58.465 43.478 0.00 0.00 0.00 3.41
180 189 4.954826 AGCTTTATACGTACTCCCTCTGTT 59.045 41.667 0.00 0.00 0.00 3.16
181 190 5.067544 AGCTTTATACGTACTCCCTCTGTTC 59.932 44.000 0.00 0.00 0.00 3.18
190 199 7.545489 ACGTACTCCCTCTGTTCTAAAATAAG 58.455 38.462 0.00 0.00 0.00 1.73
262 316 9.985318 GAGACACTTATTTTGAGATGAAGATTG 57.015 33.333 0.00 0.00 0.00 2.67
263 317 8.457261 AGACACTTATTTTGAGATGAAGATTGC 58.543 33.333 0.00 0.00 0.00 3.56
268 322 5.791367 TTTTGAGATGAAGATTGCGAGAG 57.209 39.130 0.00 0.00 0.00 3.20
272 326 4.037327 TGAGATGAAGATTGCGAGAGTAGG 59.963 45.833 0.00 0.00 0.00 3.18
273 327 4.211125 AGATGAAGATTGCGAGAGTAGGA 58.789 43.478 0.00 0.00 0.00 2.94
274 328 4.646945 AGATGAAGATTGCGAGAGTAGGAA 59.353 41.667 0.00 0.00 0.00 3.36
275 329 4.377839 TGAAGATTGCGAGAGTAGGAAG 57.622 45.455 0.00 0.00 0.00 3.46
276 330 3.131223 TGAAGATTGCGAGAGTAGGAAGG 59.869 47.826 0.00 0.00 0.00 3.46
277 331 2.035632 AGATTGCGAGAGTAGGAAGGG 58.964 52.381 0.00 0.00 0.00 3.95
278 332 0.466124 ATTGCGAGAGTAGGAAGGGC 59.534 55.000 0.00 0.00 0.00 5.19
286 340 3.571590 AGAGTAGGAAGGGCATCTACAG 58.428 50.000 0.00 0.00 36.69 2.74
287 341 3.205507 AGAGTAGGAAGGGCATCTACAGA 59.794 47.826 0.00 0.00 36.69 3.41
288 342 4.140805 AGAGTAGGAAGGGCATCTACAGAT 60.141 45.833 0.00 0.00 36.69 2.90
296 350 1.750930 CATCTACAGATGGGCGCCT 59.249 57.895 28.56 7.30 46.09 5.52
298 352 0.760567 ATCTACAGATGGGCGCCTCA 60.761 55.000 28.56 22.66 32.68 3.86
307 361 2.358984 GGCGCCTCAAAACCCGTA 60.359 61.111 22.15 0.00 0.00 4.02
323 377 1.844771 CGTATCATACGCCCGGTCGA 61.845 60.000 13.86 0.00 45.81 4.20
324 378 0.109873 GTATCATACGCCCGGTCGAG 60.110 60.000 13.86 0.46 0.00 4.04
387 443 1.135112 GCCTTAAATGGCCCTCAAACG 60.135 52.381 0.00 0.00 46.82 3.60
389 445 1.543802 CTTAAATGGCCCTCAAACGCA 59.456 47.619 0.00 0.00 0.00 5.24
398 454 1.234615 CCTCAAACGCACGGGTTGAT 61.235 55.000 10.54 0.00 0.00 2.57
399 455 0.591170 CTCAAACGCACGGGTTGATT 59.409 50.000 10.54 0.00 0.00 2.57
406 462 1.603455 CACGGGTTGATTGGCACCT 60.603 57.895 0.00 0.00 0.00 4.00
433 498 2.270434 ATATGAGGCGGATATGGGGT 57.730 50.000 0.00 0.00 0.00 4.95
436 501 2.448542 AGGCGGATATGGGGTGCT 60.449 61.111 0.00 0.00 0.00 4.40
437 502 2.056906 GAGGCGGATATGGGGTGCTT 62.057 60.000 0.00 0.00 0.00 3.91
438 503 0.766674 AGGCGGATATGGGGTGCTTA 60.767 55.000 0.00 0.00 0.00 3.09
459 524 1.209898 CACGCCTACCACGTCGTAA 59.790 57.895 0.00 0.00 42.96 3.18
527 592 0.323629 CTCACCGGAGCAAACCCTAA 59.676 55.000 9.46 0.00 33.67 2.69
528 593 0.988832 TCACCGGAGCAAACCCTAAT 59.011 50.000 9.46 0.00 0.00 1.73
569 634 2.716017 CCACCCGAGCTCACCTCTC 61.716 68.421 15.40 0.00 38.49 3.20
579 644 2.154798 CTCACCTCTCGCGGTTTCCA 62.155 60.000 6.13 0.00 34.29 3.53
625 690 2.661054 TCGGACTTCGACCAATCCA 58.339 52.632 0.00 0.00 43.74 3.41
631 696 2.168521 GACTTCGACCAATCCAGATCCA 59.831 50.000 0.00 0.00 0.00 3.41
638 703 3.574396 GACCAATCCAGATCCATCGACTA 59.426 47.826 0.00 0.00 0.00 2.59
654 720 1.144057 CTAGGGTGTCATCCGTGCC 59.856 63.158 0.00 0.00 0.00 5.01
673 739 0.680921 CGGTTGGATGAGGCAATGGT 60.681 55.000 0.00 0.00 0.00 3.55
681 747 0.108186 TGAGGCAATGGTAGTCTGCG 60.108 55.000 0.00 0.00 36.93 5.18
689 755 0.105964 TGGTAGTCTGCGTTGCACTT 59.894 50.000 0.00 0.00 33.79 3.16
697 763 4.012895 CGTTGCACTTCGCCGCTT 62.013 61.111 0.00 0.00 41.33 4.68
699 765 3.353836 TTGCACTTCGCCGCTTCC 61.354 61.111 0.00 0.00 41.33 3.46
733 819 2.962253 GCCACGACTCCATAGCGC 60.962 66.667 0.00 0.00 0.00 5.92
734 820 2.808315 CCACGACTCCATAGCGCT 59.192 61.111 17.26 17.26 0.00 5.92
761 847 2.680352 GGTGCTCGGGTCCTCTGA 60.680 66.667 0.00 0.00 0.00 3.27
767 853 2.363018 CGGGTCCTCTGAGGCTGA 60.363 66.667 19.08 0.00 34.61 4.26
810 1523 7.376866 CAGCCGACTGTAATAATAAAGCATTTG 59.623 37.037 0.00 0.00 37.80 2.32
812 1525 7.468084 GCCGACTGTAATAATAAAGCATTTGGA 60.468 37.037 0.00 0.00 39.63 3.53
813 1526 8.567948 CCGACTGTAATAATAAAGCATTTGGAT 58.432 33.333 0.00 0.00 39.63 3.41
814 1527 9.385902 CGACTGTAATAATAAAGCATTTGGATG 57.614 33.333 0.00 0.00 39.63 3.51
846 1562 3.118454 GCGCCGACTGCTTTGCTA 61.118 61.111 0.00 0.00 38.05 3.49
885 1640 0.103026 TCGGACGCTTCATCCATCTG 59.897 55.000 0.00 0.00 35.83 2.90
911 1675 2.600769 ACAAGGCGACGACCTCCT 60.601 61.111 10.58 0.00 39.93 3.69
914 1678 2.637383 AAGGCGACGACCTCCTGAC 61.637 63.158 10.58 0.00 39.93 3.51
915 1679 4.477975 GGCGACGACCTCCTGACG 62.478 72.222 0.00 0.00 0.00 4.35
917 1681 3.432588 CGACGACCTCCTGACGCT 61.433 66.667 0.00 0.00 0.00 5.07
919 1683 2.597805 ACGACCTCCTGACGCTGT 60.598 61.111 0.00 0.00 0.00 4.40
920 1684 2.179517 CGACCTCCTGACGCTGTC 59.820 66.667 2.32 2.32 0.00 3.51
963 1739 4.742649 TCGCCACTCGCTCCCTCT 62.743 66.667 0.00 0.00 38.27 3.69
985 1761 3.066190 CGGCGTCAGGGACCTACA 61.066 66.667 0.00 0.00 0.00 2.74
987 1763 1.218316 GGCGTCAGGGACCTACAAG 59.782 63.158 0.00 0.00 0.00 3.16
989 1765 1.972198 CGTCAGGGACCTACAAGCA 59.028 57.895 0.00 0.00 0.00 3.91
992 1768 1.198759 TCAGGGACCTACAAGCACCC 61.199 60.000 0.00 0.00 40.71 4.61
993 1769 2.267961 GGGACCTACAAGCACCCG 59.732 66.667 0.00 0.00 0.00 5.28
995 1771 2.436115 GACCTACAAGCACCCGCC 60.436 66.667 0.00 0.00 39.83 6.13
1235 2014 1.598701 AACCTCCGCACGTACCTACC 61.599 60.000 0.00 0.00 0.00 3.18
1238 2017 1.722636 CTCCGCACGTACCTACCTCC 61.723 65.000 0.00 0.00 0.00 4.30
1242 2021 1.390383 GCACGTACCTACCTCCTCCC 61.390 65.000 0.00 0.00 0.00 4.30
1245 2024 1.653161 CGTACCTACCTCCTCCCCCT 61.653 65.000 0.00 0.00 0.00 4.79
1284 2077 3.791586 GCCCTCCAGTCCAGGCTC 61.792 72.222 0.00 0.00 42.34 4.70
1303 2096 3.376546 GCTCAATCAAGATCCGCTCTTTT 59.623 43.478 0.00 0.00 41.60 2.27
1442 2262 3.083349 CCACCCAGCTCCGATGGA 61.083 66.667 0.00 0.00 40.51 3.41
1454 2274 4.996434 GATGGAGGCCCCGCGATG 62.996 72.222 8.23 0.00 37.93 3.84
1555 2411 1.834188 TCGCAGTCCACATGTCTCTA 58.166 50.000 0.00 0.00 0.00 2.43
1565 2421 6.268847 AGTCCACATGTCTCTACTTCTTTCTT 59.731 38.462 0.00 0.00 0.00 2.52
1566 2422 6.931840 GTCCACATGTCTCTACTTCTTTCTTT 59.068 38.462 0.00 0.00 0.00 2.52
1567 2423 8.088981 GTCCACATGTCTCTACTTCTTTCTTTA 58.911 37.037 0.00 0.00 0.00 1.85
1568 2424 8.647796 TCCACATGTCTCTACTTCTTTCTTTAA 58.352 33.333 0.00 0.00 0.00 1.52
1569 2425 8.713271 CCACATGTCTCTACTTCTTTCTTTAAC 58.287 37.037 0.00 0.00 0.00 2.01
1570 2426 9.482627 CACATGTCTCTACTTCTTTCTTTAACT 57.517 33.333 0.00 0.00 0.00 2.24
1625 2519 4.524328 TCAGACTGTTCACTCTATTCAGCA 59.476 41.667 1.59 0.00 0.00 4.41
1632 2526 4.462508 TCACTCTATTCAGCAGTTCCAG 57.537 45.455 0.00 0.00 0.00 3.86
1633 2527 2.935201 CACTCTATTCAGCAGTTCCAGC 59.065 50.000 0.00 0.00 0.00 4.85
1638 2558 1.597742 TTCAGCAGTTCCAGCTTCAC 58.402 50.000 0.00 0.00 41.14 3.18
1640 2560 1.134128 TCAGCAGTTCCAGCTTCACAA 60.134 47.619 0.00 0.00 41.14 3.33
1644 2564 2.542411 GCAGTTCCAGCTTCACAACAAG 60.542 50.000 0.00 0.00 0.00 3.16
1667 2589 2.039818 ATGCCTGATTGACTCTGCTG 57.960 50.000 0.00 0.00 0.00 4.41
1668 2590 0.689055 TGCCTGATTGACTCTGCTGT 59.311 50.000 0.00 0.00 0.00 4.40
1670 2592 1.066286 GCCTGATTGACTCTGCTGTCT 60.066 52.381 6.63 0.00 37.79 3.41
1675 2597 1.043022 TTGACTCTGCTGTCTGCTCA 58.957 50.000 3.20 0.00 43.37 4.26
1707 2629 0.690762 TGCCCTCTTGTTCCAGGTAC 59.309 55.000 0.00 0.00 0.00 3.34
1713 2635 2.781595 CTTGTTCCAGGTACGCCGCT 62.782 60.000 0.00 0.00 40.50 5.52
1791 2713 0.683973 CACAGCAAGGGAGTCAGTCT 59.316 55.000 0.00 0.00 0.00 3.24
1802 2729 0.605589 AGTCAGTCTTCTGGGCTTCG 59.394 55.000 0.00 0.00 41.59 3.79
1827 2754 3.333723 CGTCAAATTCAGACATAACGCG 58.666 45.455 3.53 3.53 35.77 6.01
1841 2770 4.738740 ACATAACGCGCTATCTTTCTGTAC 59.261 41.667 5.73 0.00 0.00 2.90
1848 2777 4.793353 GCGCTATCTTTCTGTACCTACCAG 60.793 50.000 0.00 0.00 0.00 4.00
1891 2823 7.658982 TGCTTGATTGGAACTATCTCACATATC 59.341 37.037 0.00 0.00 0.00 1.63
1896 2828 4.284490 TGGAACTATCTCACATATCCAGCC 59.716 45.833 0.00 0.00 32.10 4.85
1897 2829 4.489810 GAACTATCTCACATATCCAGCCG 58.510 47.826 0.00 0.00 0.00 5.52
1905 2837 0.747644 CATATCCAGCCGCACAACCA 60.748 55.000 0.00 0.00 0.00 3.67
1912 2844 1.664333 GCCGCACAACCACCATTTG 60.664 57.895 0.00 0.00 0.00 2.32
1926 2858 4.221703 CCACCATTTGGCATTACTAACCAA 59.778 41.667 0.00 0.00 41.61 3.67
1927 2859 5.104982 CCACCATTTGGCATTACTAACCAAT 60.105 40.000 0.00 0.00 42.77 3.16
1929 2861 7.364232 CCACCATTTGGCATTACTAACCAATAA 60.364 37.037 0.00 0.00 42.77 1.40
1930 2862 7.491048 CACCATTTGGCATTACTAACCAATAAC 59.509 37.037 0.00 0.00 42.77 1.89
1934 3064 5.571285 TGGCATTACTAACCAATAACACCA 58.429 37.500 0.00 0.00 0.00 4.17
1944 3074 0.039618 AATAACACCAGGCCCCACTG 59.960 55.000 0.00 0.00 38.21 3.66
1972 3102 9.891828 CACTAGAGTTATGATCACATCTTACTC 57.108 37.037 0.00 1.20 38.43 2.59
1999 3129 0.597568 CCAAAATTCTGTGCTCGCCA 59.402 50.000 0.00 0.00 0.00 5.69
2005 3135 0.674581 TTCTGTGCTCGCCATCCTTG 60.675 55.000 0.00 0.00 0.00 3.61
2044 3183 5.344884 TCTGTCGTTATGTGCGATTGATAA 58.655 37.500 0.00 0.00 40.59 1.75
2046 3185 4.269123 TGTCGTTATGTGCGATTGATAACC 59.731 41.667 0.00 0.00 40.59 2.85
2053 3192 9.037737 GTTATGTGCGATTGATAACCTACTTTA 57.962 33.333 0.00 0.00 29.77 1.85
2054 3193 9.772973 TTATGTGCGATTGATAACCTACTTTAT 57.227 29.630 0.00 0.00 0.00 1.40
2055 3194 7.709269 TGTGCGATTGATAACCTACTTTATC 57.291 36.000 0.00 0.00 38.47 1.75
2056 3195 7.497595 TGTGCGATTGATAACCTACTTTATCT 58.502 34.615 4.88 0.00 38.69 1.98
2057 3196 7.438160 TGTGCGATTGATAACCTACTTTATCTG 59.562 37.037 4.88 0.00 38.69 2.90
2058 3197 6.423905 TGCGATTGATAACCTACTTTATCTGC 59.576 38.462 4.88 0.00 38.69 4.26
2059 3198 6.423905 GCGATTGATAACCTACTTTATCTGCA 59.576 38.462 4.88 0.00 38.69 4.41
2060 3199 7.042051 GCGATTGATAACCTACTTTATCTGCAA 60.042 37.037 0.00 0.00 38.69 4.08
2061 3200 8.826710 CGATTGATAACCTACTTTATCTGCAAA 58.173 33.333 0.00 0.00 38.69 3.68
2114 3253 8.804912 AAGGATAGGAGATAATTGATTGATGC 57.195 34.615 0.00 0.00 0.00 3.91
2122 3273 7.613022 GGAGATAATTGATTGATGCAATCCCTA 59.387 37.037 15.28 6.56 46.65 3.53
2126 3277 7.850935 AATTGATTGATGCAATCCCTATTCT 57.149 32.000 15.28 0.00 46.65 2.40
2147 3298 7.936496 TTCTGTTATGCTTACATTTGATGGA 57.064 32.000 0.00 0.00 37.74 3.41
2172 3323 3.524789 TGTCAATCCTCATCACCTTCCAT 59.475 43.478 0.00 0.00 0.00 3.41
2233 3384 1.523154 GCGGAAAGATGTTGGTGCCA 61.523 55.000 0.00 0.00 0.00 4.92
2236 3387 1.620822 GAAAGATGTTGGTGCCACCT 58.379 50.000 16.23 0.00 39.58 4.00
2353 3504 0.252881 TCCAGCTCCCTGATCTTGGT 60.253 55.000 0.00 0.00 41.77 3.67
2356 3507 1.144936 GCTCCCTGATCTTGGTCCG 59.855 63.158 0.00 0.00 0.00 4.79
2359 3510 1.342819 CTCCCTGATCTTGGTCCGATC 59.657 57.143 0.00 0.92 38.17 3.69
2371 3522 5.771666 TCTTGGTCCGATCGGTAATATACTT 59.228 40.000 32.15 0.00 36.47 2.24
2375 3526 5.048504 GGTCCGATCGGTAATATACTTGTGA 60.049 44.000 32.15 6.17 36.47 3.58
2397 3548 5.358442 TGACTCTGCCTTCTGTATTCTACTC 59.642 44.000 0.00 0.00 0.00 2.59
2398 3549 5.515106 ACTCTGCCTTCTGTATTCTACTCT 58.485 41.667 0.00 0.00 0.00 3.24
2405 3556 8.272889 TGCCTTCTGTATTCTACTCTAAGACTA 58.727 37.037 0.00 0.00 0.00 2.59
2414 3565 6.374565 TCTACTCTAAGACTAAATCGGCAC 57.625 41.667 0.00 0.00 0.00 5.01
2431 3582 1.635844 CACGCGGTGCTGTTATAAGA 58.364 50.000 12.47 0.00 0.00 2.10
2441 3596 5.997746 GGTGCTGTTATAAGATGCCTAATGA 59.002 40.000 0.00 0.00 0.00 2.57
2445 3600 6.931281 GCTGTTATAAGATGCCTAATGAGTGA 59.069 38.462 0.00 0.00 0.00 3.41
2446 3601 7.442364 GCTGTTATAAGATGCCTAATGAGTGAA 59.558 37.037 0.00 0.00 0.00 3.18
2452 3607 5.128919 AGATGCCTAATGAGTGAATTGGTC 58.871 41.667 0.00 0.00 0.00 4.02
2462 3617 0.895100 TGAATTGGTCTGCAGGTGCC 60.895 55.000 15.13 14.15 41.18 5.01
2465 3620 1.181098 ATTGGTCTGCAGGTGCCAAC 61.181 55.000 27.82 14.20 42.83 3.77
2564 3719 2.168521 GCAGAAGTATGGTGGTGAGCTA 59.831 50.000 0.00 0.00 0.00 3.32
2585 3740 0.179004 TCACCGCCACACAGGATTTT 60.179 50.000 0.00 0.00 41.22 1.82
2588 3743 0.958091 CCGCCACACAGGATTTTTCA 59.042 50.000 0.00 0.00 41.22 2.69
2627 3782 3.298619 CTGGCATGGAAATTATGTCCCA 58.701 45.455 0.00 0.00 33.89 4.37
2639 3794 7.013942 GGAAATTATGTCCCATACAAGGTAACC 59.986 40.741 0.00 0.00 42.70 2.85
2644 3800 6.615667 TGTCCCATACAAGGTAACCAACCG 62.616 50.000 0.00 0.00 42.90 4.44
2652 3808 1.012486 GGTAACCAACCGTCTCAGCG 61.012 60.000 0.00 0.00 38.88 5.18
2661 3817 3.425578 CGTCTCAGCGGATTCACTT 57.574 52.632 0.00 0.00 0.00 3.16
2663 3819 1.135257 CGTCTCAGCGGATTCACTTCT 60.135 52.381 0.00 0.00 0.00 2.85
2664 3820 2.097629 CGTCTCAGCGGATTCACTTCTA 59.902 50.000 0.00 0.00 0.00 2.10
2665 3821 3.427638 CGTCTCAGCGGATTCACTTCTAA 60.428 47.826 0.00 0.00 0.00 2.10
2672 3843 6.590292 TCAGCGGATTCACTTCTAAGTTTTAG 59.410 38.462 0.00 0.00 37.08 1.85
2730 3917 8.511604 TTGATTAAGATCAAGTCCCTGATTTC 57.488 34.615 0.00 0.00 45.03 2.17
2738 3925 4.104738 TCAAGTCCCTGATTTCTCTTTGGT 59.895 41.667 0.00 0.00 0.00 3.67
2741 3928 2.027192 TCCCTGATTTCTCTTTGGTCCG 60.027 50.000 0.00 0.00 0.00 4.79
2763 3950 3.748083 ACATCTTGCCATATGTGCCTAG 58.252 45.455 11.98 9.81 35.06 3.02
2766 3953 2.972021 TCTTGCCATATGTGCCTAGCTA 59.028 45.455 11.98 0.00 0.00 3.32
2768 3955 1.002430 TGCCATATGTGCCTAGCTAGC 59.998 52.381 15.74 6.62 0.00 3.42
2771 3958 3.332919 CCATATGTGCCTAGCTAGCTTG 58.667 50.000 24.88 21.01 0.00 4.01
2772 3959 3.332919 CATATGTGCCTAGCTAGCTTGG 58.667 50.000 33.05 33.05 40.94 3.61
2773 3960 1.207791 ATGTGCCTAGCTAGCTTGGT 58.792 50.000 35.39 19.94 40.29 3.67
2774 3961 1.860641 TGTGCCTAGCTAGCTTGGTA 58.139 50.000 35.39 31.44 40.29 3.25
2775 3962 2.398588 TGTGCCTAGCTAGCTTGGTAT 58.601 47.619 35.39 11.55 40.29 2.73
2776 3963 2.771943 TGTGCCTAGCTAGCTTGGTATT 59.228 45.455 35.39 10.86 40.29 1.89
2777 3964 3.964688 TGTGCCTAGCTAGCTTGGTATTA 59.035 43.478 35.39 24.77 40.29 0.98
2778 3965 4.593206 TGTGCCTAGCTAGCTTGGTATTAT 59.407 41.667 35.39 9.47 40.29 1.28
2779 3966 5.071788 TGTGCCTAGCTAGCTTGGTATTATT 59.928 40.000 35.39 8.78 40.29 1.40
2780 3967 5.998363 GTGCCTAGCTAGCTTGGTATTATTT 59.002 40.000 35.39 8.29 40.29 1.40
2781 3968 6.147985 GTGCCTAGCTAGCTTGGTATTATTTC 59.852 42.308 35.39 21.59 40.29 2.17
2782 3969 6.043243 TGCCTAGCTAGCTTGGTATTATTTCT 59.957 38.462 35.39 7.69 40.29 2.52
2783 3970 6.937465 GCCTAGCTAGCTTGGTATTATTTCTT 59.063 38.462 35.39 7.08 40.29 2.52
2784 3971 7.445707 GCCTAGCTAGCTTGGTATTATTTCTTT 59.554 37.037 35.39 6.72 40.29 2.52
2785 3972 9.343539 CCTAGCTAGCTTGGTATTATTTCTTTT 57.656 33.333 30.25 1.72 34.91 2.27
2787 3974 8.807948 AGCTAGCTTGGTATTATTTCTTTTCA 57.192 30.769 12.68 0.00 0.00 2.69
2788 3975 8.897752 AGCTAGCTTGGTATTATTTCTTTTCAG 58.102 33.333 12.68 0.00 0.00 3.02
2789 3976 8.678199 GCTAGCTTGGTATTATTTCTTTTCAGT 58.322 33.333 7.70 0.00 0.00 3.41
2809 3996 9.587772 TTTCAGTATAATCTGAGTAAGTTCTGC 57.412 33.333 0.00 0.00 43.85 4.26
2810 3997 7.717568 TCAGTATAATCTGAGTAAGTTCTGCC 58.282 38.462 0.00 0.00 39.20 4.85
2811 3998 7.342026 TCAGTATAATCTGAGTAAGTTCTGCCA 59.658 37.037 0.00 0.00 39.20 4.92
2812 3999 8.147058 CAGTATAATCTGAGTAAGTTCTGCCAT 58.853 37.037 0.00 0.00 37.61 4.40
2813 4000 8.147058 AGTATAATCTGAGTAAGTTCTGCCATG 58.853 37.037 0.00 0.00 0.00 3.66
2814 4001 4.833478 ATCTGAGTAAGTTCTGCCATGT 57.167 40.909 0.00 0.00 0.00 3.21
2815 4002 3.930336 TCTGAGTAAGTTCTGCCATGTG 58.070 45.455 0.00 0.00 0.00 3.21
2816 4003 3.324846 TCTGAGTAAGTTCTGCCATGTGT 59.675 43.478 0.00 0.00 0.00 3.72
2817 4004 3.402110 TGAGTAAGTTCTGCCATGTGTG 58.598 45.455 0.00 0.00 0.00 3.82
2818 4005 2.154462 AGTAAGTTCTGCCATGTGTGC 58.846 47.619 0.00 0.00 0.00 4.57
2819 4006 1.200020 GTAAGTTCTGCCATGTGTGCC 59.800 52.381 0.00 0.00 0.00 5.01
2820 4007 0.178981 AAGTTCTGCCATGTGTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
2821 4008 0.692476 AGTTCTGCCATGTGTGCCTA 59.308 50.000 0.00 0.00 0.00 3.93
2822 4009 1.073763 AGTTCTGCCATGTGTGCCTAA 59.926 47.619 0.00 0.00 0.00 2.69
2823 4010 1.200020 GTTCTGCCATGTGTGCCTAAC 59.800 52.381 0.00 0.00 0.00 2.34
2824 4011 0.692476 TCTGCCATGTGTGCCTAACT 59.308 50.000 0.00 0.00 0.00 2.24
2825 4012 1.073763 TCTGCCATGTGTGCCTAACTT 59.926 47.619 0.00 0.00 0.00 2.66
2826 4013 1.200716 CTGCCATGTGTGCCTAACTTG 59.799 52.381 0.00 0.00 0.00 3.16
2827 4014 1.202867 TGCCATGTGTGCCTAACTTGA 60.203 47.619 0.00 0.00 0.00 3.02
2831 4018 4.561326 GCCATGTGTGCCTAACTTGATTTT 60.561 41.667 0.00 0.00 0.00 1.82
2832 4019 4.925054 CCATGTGTGCCTAACTTGATTTTG 59.075 41.667 0.00 0.00 0.00 2.44
2838 4025 5.127845 TGTGCCTAACTTGATTTTGTTTCCA 59.872 36.000 0.00 0.00 0.00 3.53
2849 4036 6.664515 TGATTTTGTTTCCATTCAGTACGAC 58.335 36.000 0.00 0.00 0.00 4.34
2867 4054 1.070758 GACCTGAGCAAGTTCTGTCCA 59.929 52.381 0.00 0.00 0.00 4.02
2894 4081 1.078759 CTGTCCTGTTCGATCACGCC 61.079 60.000 0.00 0.00 39.58 5.68
2897 4084 2.158959 CCTGTTCGATCACGCCGAC 61.159 63.158 0.00 0.00 39.58 4.79
2906 4093 3.740397 CACGCCGACCCGTCAGTA 61.740 66.667 0.00 0.00 39.83 2.74
2944 4131 7.615403 TGCTTCTTGTCACTGAGATAATACTT 58.385 34.615 0.00 0.00 0.00 2.24
2950 4137 9.429359 CTTGTCACTGAGATAATACTTCAGTTT 57.571 33.333 3.79 0.00 39.33 2.66
2951 4138 9.778741 TTGTCACTGAGATAATACTTCAGTTTT 57.221 29.630 3.79 0.00 39.33 2.43
2956 4143 6.423182 TGAGATAATACTTCAGTTTTGGGGG 58.577 40.000 0.00 0.00 0.00 5.40
2957 4144 5.201243 AGATAATACTTCAGTTTTGGGGGC 58.799 41.667 0.00 0.00 0.00 5.80
2958 4145 2.231716 ATACTTCAGTTTTGGGGGCC 57.768 50.000 0.00 0.00 0.00 5.80
2959 4146 0.854218 TACTTCAGTTTTGGGGGCCA 59.146 50.000 4.39 0.00 0.00 5.36
2960 4147 0.469892 ACTTCAGTTTTGGGGGCCAG 60.470 55.000 4.39 0.00 33.81 4.85
2961 4148 1.152355 TTCAGTTTTGGGGGCCAGG 60.152 57.895 4.39 0.00 33.81 4.45
2962 4149 2.604382 CAGTTTTGGGGGCCAGGG 60.604 66.667 4.39 0.00 33.81 4.45
2963 4150 4.638895 AGTTTTGGGGGCCAGGGC 62.639 66.667 4.39 3.77 33.81 5.19
2979 4166 1.185315 GGGCCATTTTAGCTGCTTCA 58.815 50.000 7.79 0.00 0.00 3.02
2982 4169 2.482490 GGCCATTTTAGCTGCTTCATGG 60.482 50.000 21.38 21.38 35.26 3.66
2986 4173 3.940209 TTTTAGCTGCTTCATGGGTTG 57.060 42.857 7.79 0.00 0.00 3.77
2987 4174 1.838112 TTAGCTGCTTCATGGGTTGG 58.162 50.000 7.79 0.00 0.00 3.77
2989 4176 2.353610 GCTGCTTCATGGGTTGGGG 61.354 63.158 0.00 0.00 0.00 4.96
2990 4177 1.077265 CTGCTTCATGGGTTGGGGT 59.923 57.895 0.00 0.00 0.00 4.95
2994 4181 1.005450 GCTTCATGGGTTGGGGTTCTA 59.995 52.381 0.00 0.00 0.00 2.10
2996 4183 3.356290 CTTCATGGGTTGGGGTTCTAAG 58.644 50.000 0.00 0.00 0.00 2.18
2997 4184 2.354328 TCATGGGTTGGGGTTCTAAGT 58.646 47.619 0.00 0.00 0.00 2.24
2998 4185 2.307686 TCATGGGTTGGGGTTCTAAGTC 59.692 50.000 0.00 0.00 0.00 3.01
2999 4186 2.127651 TGGGTTGGGGTTCTAAGTCT 57.872 50.000 0.00 0.00 0.00 3.24
3000 4187 3.278987 TGGGTTGGGGTTCTAAGTCTA 57.721 47.619 0.00 0.00 0.00 2.59
3001 4188 3.600433 TGGGTTGGGGTTCTAAGTCTAA 58.400 45.455 0.00 0.00 0.00 2.10
3004 4191 4.565028 GGGTTGGGGTTCTAAGTCTAACAG 60.565 50.000 0.00 0.00 0.00 3.16
3005 4192 3.975168 TGGGGTTCTAAGTCTAACAGC 57.025 47.619 0.00 0.00 0.00 4.40
3006 4193 3.517612 TGGGGTTCTAAGTCTAACAGCT 58.482 45.455 0.00 0.00 0.00 4.24
3007 4194 3.908103 TGGGGTTCTAAGTCTAACAGCTT 59.092 43.478 0.00 0.00 0.00 3.74
3009 4196 4.695928 GGGGTTCTAAGTCTAACAGCTTTG 59.304 45.833 0.00 0.00 0.00 2.77
3012 4199 5.334182 GGTTCTAAGTCTAACAGCTTTGTGC 60.334 44.000 0.00 0.00 43.29 4.57
3022 4210 3.873805 GCTTTGTGCTTGTTCCTCC 57.126 52.632 0.00 0.00 38.95 4.30
3033 4222 3.321968 GCTTGTTCCTCCCATTTTCAGTT 59.678 43.478 0.00 0.00 0.00 3.16
3036 4225 4.803452 TGTTCCTCCCATTTTCAGTTCTT 58.197 39.130 0.00 0.00 0.00 2.52
3063 4252 0.602638 CAACTGACAAGCCTGGCGTA 60.603 55.000 13.96 0.00 30.46 4.42
3093 4282 2.955660 TGATTTTGTGATATTCCCGCCC 59.044 45.455 0.00 0.00 0.00 6.13
3096 4285 1.338890 TTGTGATATTCCCGCCCCGA 61.339 55.000 0.00 0.00 0.00 5.14
3117 4306 1.891919 GCTGGTTGCCGAGAACACA 60.892 57.895 0.00 0.00 35.15 3.72
3165 4354 3.766644 CATGAGCGAGTTCATGGGA 57.233 52.632 18.24 0.00 46.81 4.37
3201 4390 8.854312 GGCGTATACGAGGTAATAAATTTCTAC 58.146 37.037 28.66 4.07 43.02 2.59
3239 4428 8.739972 ACTGAACTGAACTTGTTATTTGTTTCT 58.260 29.630 0.00 0.00 0.00 2.52
3247 4436 8.926715 AACTTGTTATTTGTTTCTTGAAGTCC 57.073 30.769 0.00 0.00 0.00 3.85
3250 4439 9.586435 CTTGTTATTTGTTTCTTGAAGTCCTTT 57.414 29.630 0.00 0.00 0.00 3.11
3255 4444 7.931578 TTTGTTTCTTGAAGTCCTTTACTGA 57.068 32.000 0.00 0.00 38.88 3.41
3256 4445 7.931578 TTGTTTCTTGAAGTCCTTTACTGAA 57.068 32.000 0.00 0.00 38.88 3.02
3257 4446 7.931578 TGTTTCTTGAAGTCCTTTACTGAAA 57.068 32.000 0.00 0.00 38.88 2.69
3258 4447 7.758495 TGTTTCTTGAAGTCCTTTACTGAAAC 58.242 34.615 15.10 15.10 42.31 2.78
3259 4448 7.392113 TGTTTCTTGAAGTCCTTTACTGAAACA 59.608 33.333 17.90 17.90 45.54 2.83
3269 4458 7.393515 AGTCCTTTACTGAAACAAACTGAACTT 59.606 33.333 0.00 0.00 36.93 2.66
3270 4459 7.484959 GTCCTTTACTGAAACAAACTGAACTTG 59.515 37.037 0.00 0.00 0.00 3.16
3272 4461 8.026607 CCTTTACTGAAACAAACTGAACTTGAA 58.973 33.333 0.00 0.00 0.00 2.69
3273 4462 8.736751 TTTACTGAAACAAACTGAACTTGAAC 57.263 30.769 0.00 0.00 0.00 3.18
3278 4467 3.758300 ACAAACTGAACTTGAACTTGCG 58.242 40.909 0.00 0.00 0.00 4.85
3281 4472 1.593006 ACTGAACTTGAACTTGCGACG 59.407 47.619 0.00 0.00 0.00 5.12
3296 4487 2.672996 ACGCAGGCAAAAGCCGAT 60.673 55.556 0.19 0.00 34.52 4.18
3344 4535 1.379443 CAGCTGCATGACACCCCAT 60.379 57.895 0.00 0.00 0.00 4.00
3392 4583 2.042259 CATCAGCAAGCTTGGCGGA 61.042 57.895 27.10 22.65 39.67 5.54
3398 4589 4.394712 AAGCTTGGCGGACCGGAG 62.395 66.667 17.22 0.00 39.70 4.63
3461 4652 2.895680 GAGTCTGCGCTGATCCCA 59.104 61.111 20.31 0.00 0.00 4.37
3518 4709 2.617532 GGACCTCGACTACTACCAGTGT 60.618 54.545 0.00 0.00 0.00 3.55
3545 4736 1.683319 GGGCTCAAATCCCACTTCTCC 60.683 57.143 0.00 0.00 43.37 3.71
3548 4739 2.716217 CTCAAATCCCACTTCTCCCAC 58.284 52.381 0.00 0.00 0.00 4.61
3572 4766 1.194781 AAGATGGCAGTGACGGACCT 61.195 55.000 0.00 0.00 0.00 3.85
3582 4776 3.509137 GACGGACCTGCGACAACCA 62.509 63.158 0.00 0.00 0.00 3.67
3585 4779 2.280797 GACCTGCGACAACCAGCA 60.281 61.111 0.00 0.00 41.55 4.41
3619 4813 1.202582 TGGCGAGAAGTAGCTCTGTTC 59.797 52.381 0.00 0.00 32.71 3.18
3643 4847 5.995260 CCGCAGGTAGGAAATGAAATTCCC 61.995 50.000 2.56 0.00 46.48 3.97
3701 4908 4.892934 TGTGTAAAGGGAGAAAGCAAACAT 59.107 37.500 0.00 0.00 0.00 2.71
3780 4987 5.278610 CCATCCAACATGCCAATGTGTATAG 60.279 44.000 0.00 0.00 46.58 1.31
3781 4988 5.109500 TCCAACATGCCAATGTGTATAGA 57.891 39.130 0.00 0.00 46.58 1.98
3817 5042 3.991773 AGCAAGCAAAAGCATGTACATTG 59.008 39.130 5.37 3.62 0.00 2.82
3844 5073 4.741676 GTGATGAGCAGTTGGTTTTCTTTG 59.258 41.667 0.00 0.00 0.00 2.77
3895 5124 1.775385 ACCCTCACCACTTTTGTTGG 58.225 50.000 0.00 0.00 0.00 3.77
3901 5130 5.508994 CCCTCACCACTTTTGTTGGATAAAC 60.509 44.000 0.00 0.00 39.41 2.01
3935 5164 8.103305 AGTTAATTCTGTAAGGAAGAAGATGCA 58.897 33.333 0.00 0.00 37.10 3.96
3936 5165 8.897752 GTTAATTCTGTAAGGAAGAAGATGCAT 58.102 33.333 0.00 0.00 37.10 3.96
3947 5176 7.542025 AGGAAGAAGATGCATACATGTTTTTC 58.458 34.615 2.30 9.44 43.93 2.29
4002 5247 4.332819 AGTCTTCTGCTTGTTGTGTTGTAC 59.667 41.667 0.00 0.00 0.00 2.90
4045 5290 9.847706 GACAGTATACATGTATGTTCCTATCTG 57.152 37.037 25.48 19.17 41.97 2.90
4097 5342 1.470098 CCATCAGTTAGTTGCACCTGC 59.530 52.381 0.00 0.00 42.50 4.85
4112 5357 4.124238 GCACCTGCATTAGTTATACGGAA 58.876 43.478 0.00 0.00 41.59 4.30
4130 5376 3.671433 CGGAATGCTTCAGAATTGTGTGG 60.671 47.826 2.11 0.00 0.00 4.17
4140 5386 7.558161 TTCAGAATTGTGTGGATATAAGCAG 57.442 36.000 2.11 0.00 0.00 4.24
4141 5387 5.528690 TCAGAATTGTGTGGATATAAGCAGC 59.471 40.000 2.11 0.00 0.00 5.25
4142 5388 5.297527 CAGAATTGTGTGGATATAAGCAGCA 59.702 40.000 0.00 0.00 0.00 4.41
4143 5389 5.887598 AGAATTGTGTGGATATAAGCAGCAA 59.112 36.000 0.00 0.00 0.00 3.91
4144 5390 6.377996 AGAATTGTGTGGATATAAGCAGCAAA 59.622 34.615 0.00 0.00 0.00 3.68
4145 5391 6.720112 ATTGTGTGGATATAAGCAGCAAAT 57.280 33.333 0.00 0.00 0.00 2.32
4146 5392 5.756195 TGTGTGGATATAAGCAGCAAATC 57.244 39.130 0.00 0.00 0.00 2.17
4147 5393 5.192176 TGTGTGGATATAAGCAGCAAATCA 58.808 37.500 0.00 0.00 0.00 2.57
4149 5395 6.152492 TGTGTGGATATAAGCAGCAAATCAAA 59.848 34.615 0.00 0.00 0.00 2.69
4150 5396 7.147863 TGTGTGGATATAAGCAGCAAATCAAAT 60.148 33.333 0.00 0.00 0.00 2.32
4151 5397 7.707893 GTGTGGATATAAGCAGCAAATCAAATT 59.292 33.333 0.00 0.00 0.00 1.82
4152 5398 7.922278 TGTGGATATAAGCAGCAAATCAAATTC 59.078 33.333 0.00 0.00 0.00 2.17
4153 5399 7.113965 GTGGATATAAGCAGCAAATCAAATTCG 59.886 37.037 0.00 0.00 0.00 3.34
4154 5400 6.583806 GGATATAAGCAGCAAATCAAATTCGG 59.416 38.462 0.00 0.00 0.00 4.30
4162 5408 3.062504 GCAAATCAAATTCGGCATCCAAC 59.937 43.478 0.00 0.00 0.00 3.77
4167 5413 3.440173 TCAAATTCGGCATCCAACTTCTC 59.560 43.478 0.00 0.00 0.00 2.87
4171 5417 1.089920 CGGCATCCAACTTCTCCTTG 58.910 55.000 0.00 0.00 0.00 3.61
4173 5419 2.795329 GGCATCCAACTTCTCCTTGAA 58.205 47.619 0.00 0.00 0.00 2.69
4200 5446 5.011586 TGAACTGGAGATGCATTTGATTCA 58.988 37.500 0.00 4.45 0.00 2.57
4201 5447 5.124936 TGAACTGGAGATGCATTTGATTCAG 59.875 40.000 0.00 4.87 0.00 3.02
4204 5450 4.851843 TGGAGATGCATTTGATTCAGACT 58.148 39.130 0.00 0.00 0.00 3.24
4208 5454 6.349944 GGAGATGCATTTGATTCAGACTTGTT 60.350 38.462 0.00 0.00 0.00 2.83
4225 5471 3.319137 TGTTGCTAAGGCTGTGAGTAG 57.681 47.619 0.00 0.00 39.59 2.57
4227 5473 3.056536 TGTTGCTAAGGCTGTGAGTAGAG 60.057 47.826 0.00 0.00 39.59 2.43
4228 5474 2.808919 TGCTAAGGCTGTGAGTAGAGT 58.191 47.619 0.00 0.00 39.59 3.24
4229 5475 2.493675 TGCTAAGGCTGTGAGTAGAGTG 59.506 50.000 0.00 0.00 39.59 3.51
4287 5533 6.051074 CACTGAAGATTGTGCATATGAGGTA 58.949 40.000 6.97 0.00 0.00 3.08
4290 5536 4.630644 AGATTGTGCATATGAGGTAGGG 57.369 45.455 6.97 0.00 0.00 3.53
4295 5541 1.507742 TGCATATGAGGTAGGGAGGGA 59.492 52.381 6.97 0.00 0.00 4.20
4296 5542 2.183679 GCATATGAGGTAGGGAGGGAG 58.816 57.143 6.97 0.00 0.00 4.30
4297 5543 2.826488 CATATGAGGTAGGGAGGGAGG 58.174 57.143 0.00 0.00 0.00 4.30
4298 5544 1.167943 TATGAGGTAGGGAGGGAGGG 58.832 60.000 0.00 0.00 0.00 4.30
4317 5563 3.644953 AGGGAGGGTCCTCTGAATC 57.355 57.895 15.74 0.10 42.38 2.52
4328 5574 2.376518 TCCTCTGAATCCTTGGCAACTT 59.623 45.455 0.00 0.00 37.61 2.66
4335 5581 1.174712 TCCTTGGCAACTTGCTCTGC 61.175 55.000 13.43 0.00 44.28 4.26
4342 5588 2.222445 GGCAACTTGCTCTGCATTTTTG 59.778 45.455 13.43 0.00 44.28 2.44
4350 5596 4.011698 TGCTCTGCATTTTTGCTAGATCA 58.988 39.130 0.00 1.07 31.71 2.92
4354 5600 4.095410 TGCATTTTTGCTAGATCAACCG 57.905 40.909 0.00 0.00 35.49 4.44
4389 5635 6.863645 TCTCTGTATGTAATTAATGCTCGAGC 59.136 38.462 30.42 30.42 42.50 5.03
4521 5768 2.885135 TTCAGACCTGGTGAATGCAT 57.115 45.000 2.82 0.00 0.00 3.96
4533 5780 3.367703 GGTGAATGCATGTTTAGCTGCTT 60.368 43.478 7.79 0.00 39.16 3.91
4540 5787 3.799917 GCATGTTTAGCTGCTTTGTTGGT 60.800 43.478 7.79 0.00 35.49 3.67
4548 5795 2.608752 GCTGCTTTGTTGGTCTTCCATG 60.609 50.000 0.00 0.00 43.91 3.66
4566 5813 8.577296 TCTTCCATGATTAATTCCTAGTAGTCG 58.423 37.037 0.00 0.00 0.00 4.18
4572 5819 8.162878 TGATTAATTCCTAGTAGTCGGTACTG 57.837 38.462 8.22 0.00 42.37 2.74
4573 5820 7.994911 TGATTAATTCCTAGTAGTCGGTACTGA 59.005 37.037 0.00 0.00 42.37 3.41
4590 5837 5.636965 GGTACTGATGCTGATATTGCTACAG 59.363 44.000 17.11 17.11 38.76 2.74
4591 5838 5.287674 ACTGATGCTGATATTGCTACAGT 57.712 39.130 17.85 17.85 39.90 3.55
4592 5839 5.678583 ACTGATGCTGATATTGCTACAGTT 58.321 37.500 17.85 9.91 40.84 3.16
4593 5840 5.757320 ACTGATGCTGATATTGCTACAGTTC 59.243 40.000 17.85 0.00 40.84 3.01
4594 5841 4.746611 TGATGCTGATATTGCTACAGTTCG 59.253 41.667 0.00 0.00 34.60 3.95
4595 5842 4.123497 TGCTGATATTGCTACAGTTCGT 57.877 40.909 0.00 0.00 34.60 3.85
4596 5843 4.503910 TGCTGATATTGCTACAGTTCGTT 58.496 39.130 0.00 0.00 34.60 3.85
4597 5844 4.566759 TGCTGATATTGCTACAGTTCGTTC 59.433 41.667 0.00 0.00 34.60 3.95
4598 5845 4.566759 GCTGATATTGCTACAGTTCGTTCA 59.433 41.667 0.00 0.00 34.60 3.18
4599 5846 5.500931 GCTGATATTGCTACAGTTCGTTCAC 60.501 44.000 0.00 0.00 34.60 3.18
4600 5847 5.474825 TGATATTGCTACAGTTCGTTCACA 58.525 37.500 0.00 0.00 0.00 3.58
4601 5848 6.106003 TGATATTGCTACAGTTCGTTCACAT 58.894 36.000 0.00 0.00 0.00 3.21
4602 5849 6.593770 TGATATTGCTACAGTTCGTTCACATT 59.406 34.615 0.00 0.00 0.00 2.71
4603 5850 4.466567 TTGCTACAGTTCGTTCACATTG 57.533 40.909 0.00 0.00 0.00 2.82
4604 5851 3.723260 TGCTACAGTTCGTTCACATTGA 58.277 40.909 0.00 0.00 0.00 2.57
4605 5852 3.740832 TGCTACAGTTCGTTCACATTGAG 59.259 43.478 0.00 0.00 0.00 3.02
4606 5853 3.987868 GCTACAGTTCGTTCACATTGAGA 59.012 43.478 0.00 0.00 0.00 3.27
4607 5854 4.447724 GCTACAGTTCGTTCACATTGAGAA 59.552 41.667 0.00 0.00 0.00 2.87
4608 5855 5.050363 GCTACAGTTCGTTCACATTGAGAAA 60.050 40.000 0.00 0.00 0.00 2.52
4609 5856 5.409643 ACAGTTCGTTCACATTGAGAAAG 57.590 39.130 0.00 1.22 0.00 2.62
4610 5857 5.116180 ACAGTTCGTTCACATTGAGAAAGA 58.884 37.500 8.01 8.01 32.92 2.52
4611 5858 5.584649 ACAGTTCGTTCACATTGAGAAAGAA 59.415 36.000 16.62 16.62 39.80 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.021457 AGTTCAAAACACCGGACCAAG 58.979 47.619 9.46 0.00 0.00 3.61
51 52 3.515630 CATCACAGATTCGCAGTACTGT 58.484 45.455 23.44 3.97 43.05 3.55
52 53 2.862536 CCATCACAGATTCGCAGTACTG 59.137 50.000 18.93 18.93 36.58 2.74
58 59 2.985957 TCATCCATCACAGATTCGCA 57.014 45.000 0.00 0.00 0.00 5.10
73 74 3.486542 GCGTTGATCAAGGAAGCTTCATC 60.487 47.826 27.70 20.05 0.00 2.92
75 76 1.806542 GCGTTGATCAAGGAAGCTTCA 59.193 47.619 27.70 7.74 0.00 3.02
76 77 1.806542 TGCGTTGATCAAGGAAGCTTC 59.193 47.619 27.70 18.54 0.00 3.86
77 78 1.896220 TGCGTTGATCAAGGAAGCTT 58.104 45.000 27.70 0.00 0.00 3.74
78 79 1.741706 CATGCGTTGATCAAGGAAGCT 59.258 47.619 27.70 4.52 0.00 3.74
83 87 0.379669 GCTCCATGCGTTGATCAAGG 59.620 55.000 21.08 21.08 0.00 3.61
115 124 3.718434 AGATAGCTTCATCCATTGACCCA 59.282 43.478 0.00 0.00 32.84 4.51
128 137 8.801913 GTTGATTATGCACAAAAAGATAGCTTC 58.198 33.333 0.00 0.00 31.82 3.86
129 138 8.306038 TGTTGATTATGCACAAAAAGATAGCTT 58.694 29.630 0.00 0.00 35.37 3.74
130 139 7.829725 TGTTGATTATGCACAAAAAGATAGCT 58.170 30.769 0.00 0.00 0.00 3.32
131 140 8.464770 TTGTTGATTATGCACAAAAAGATAGC 57.535 30.769 0.00 0.00 0.00 2.97
133 142 8.924691 GCTTTGTTGATTATGCACAAAAAGATA 58.075 29.630 16.96 0.00 32.69 1.98
134 143 7.658575 AGCTTTGTTGATTATGCACAAAAAGAT 59.341 29.630 16.96 12.24 32.69 2.40
135 144 6.985645 AGCTTTGTTGATTATGCACAAAAAGA 59.014 30.769 16.96 0.48 32.69 2.52
136 145 7.181143 AGCTTTGTTGATTATGCACAAAAAG 57.819 32.000 0.00 3.81 33.26 2.27
137 146 7.551035 AAGCTTTGTTGATTATGCACAAAAA 57.449 28.000 0.00 0.00 31.19 1.94
138 147 7.551035 AAAGCTTTGTTGATTATGCACAAAA 57.449 28.000 11.80 0.00 31.19 2.44
139 148 8.830201 ATAAAGCTTTGTTGATTATGCACAAA 57.170 26.923 22.02 0.00 0.00 2.83
140 149 9.352784 GTATAAAGCTTTGTTGATTATGCACAA 57.647 29.630 22.02 0.00 0.00 3.33
141 150 7.696035 CGTATAAAGCTTTGTTGATTATGCACA 59.304 33.333 22.02 0.00 0.00 4.57
142 151 7.696453 ACGTATAAAGCTTTGTTGATTATGCAC 59.304 33.333 22.02 5.88 0.00 4.57
143 152 7.757526 ACGTATAAAGCTTTGTTGATTATGCA 58.242 30.769 22.02 0.00 0.00 3.96
144 153 9.155053 GTACGTATAAAGCTTTGTTGATTATGC 57.845 33.333 22.02 7.78 0.00 3.14
147 156 9.090692 GGAGTACGTATAAAGCTTTGTTGATTA 57.909 33.333 22.02 0.00 0.00 1.75
148 157 7.065443 GGGAGTACGTATAAAGCTTTGTTGATT 59.935 37.037 22.02 4.36 0.00 2.57
149 158 6.537660 GGGAGTACGTATAAAGCTTTGTTGAT 59.462 38.462 22.02 9.52 0.00 2.57
150 159 5.870978 GGGAGTACGTATAAAGCTTTGTTGA 59.129 40.000 22.02 1.47 0.00 3.18
151 160 5.873164 AGGGAGTACGTATAAAGCTTTGTTG 59.127 40.000 22.02 13.05 0.00 3.33
152 161 6.046290 AGGGAGTACGTATAAAGCTTTGTT 57.954 37.500 22.02 11.34 0.00 2.83
153 162 5.421374 AGAGGGAGTACGTATAAAGCTTTGT 59.579 40.000 22.02 17.53 0.00 2.83
154 163 5.749109 CAGAGGGAGTACGTATAAAGCTTTG 59.251 44.000 22.02 7.32 0.00 2.77
155 164 5.421374 ACAGAGGGAGTACGTATAAAGCTTT 59.579 40.000 17.30 17.30 0.00 3.51
156 165 4.954826 ACAGAGGGAGTACGTATAAAGCTT 59.045 41.667 0.00 0.00 0.00 3.74
157 166 4.534797 ACAGAGGGAGTACGTATAAAGCT 58.465 43.478 0.00 0.00 0.00 3.74
158 167 4.915158 ACAGAGGGAGTACGTATAAAGC 57.085 45.455 0.00 0.00 0.00 3.51
159 168 6.696441 AGAACAGAGGGAGTACGTATAAAG 57.304 41.667 0.00 0.00 0.00 1.85
160 169 8.579850 TTTAGAACAGAGGGAGTACGTATAAA 57.420 34.615 0.00 0.00 0.00 1.40
161 170 8.579850 TTTTAGAACAGAGGGAGTACGTATAA 57.420 34.615 0.00 0.00 0.00 0.98
162 171 8.757982 ATTTTAGAACAGAGGGAGTACGTATA 57.242 34.615 0.00 0.00 0.00 1.47
163 172 7.657023 ATTTTAGAACAGAGGGAGTACGTAT 57.343 36.000 0.00 0.00 0.00 3.06
164 173 8.579850 TTATTTTAGAACAGAGGGAGTACGTA 57.420 34.615 0.00 0.00 0.00 3.57
165 174 5.997384 ATTTTAGAACAGAGGGAGTACGT 57.003 39.130 0.00 0.00 0.00 3.57
166 175 7.488471 CACTTATTTTAGAACAGAGGGAGTACG 59.512 40.741 0.00 0.00 0.00 3.67
167 176 8.312564 ACACTTATTTTAGAACAGAGGGAGTAC 58.687 37.037 0.00 0.00 0.00 2.73
168 177 8.431910 ACACTTATTTTAGAACAGAGGGAGTA 57.568 34.615 0.00 0.00 0.00 2.59
169 178 7.317722 ACACTTATTTTAGAACAGAGGGAGT 57.682 36.000 0.00 0.00 0.00 3.85
170 179 9.892130 AATACACTTATTTTAGAACAGAGGGAG 57.108 33.333 0.00 0.00 0.00 4.30
233 287 8.993121 TCTTCATCTCAAAATAAGTGTCTCAAC 58.007 33.333 0.00 0.00 0.00 3.18
235 289 9.730705 AATCTTCATCTCAAAATAAGTGTCTCA 57.269 29.630 0.00 0.00 0.00 3.27
241 295 7.550551 TCTCGCAATCTTCATCTCAAAATAAGT 59.449 33.333 0.00 0.00 0.00 2.24
242 296 7.913423 TCTCGCAATCTTCATCTCAAAATAAG 58.087 34.615 0.00 0.00 0.00 1.73
254 308 3.131223 CCTTCCTACTCTCGCAATCTTCA 59.869 47.826 0.00 0.00 0.00 3.02
262 316 0.032815 GATGCCCTTCCTACTCTCGC 59.967 60.000 0.00 0.00 0.00 5.03
263 317 1.698506 AGATGCCCTTCCTACTCTCG 58.301 55.000 0.00 0.00 0.00 4.04
268 322 4.264460 CATCTGTAGATGCCCTTCCTAC 57.736 50.000 8.78 0.00 44.44 3.18
286 340 2.710902 GGGTTTTGAGGCGCCCATC 61.711 63.158 26.15 16.53 40.76 3.51
287 341 2.679996 GGGTTTTGAGGCGCCCAT 60.680 61.111 26.15 4.93 40.76 4.00
305 359 0.109873 CTCGACCGGGCGTATGATAC 60.110 60.000 32.26 0.00 0.00 2.24
306 360 1.859427 GCTCGACCGGGCGTATGATA 61.859 60.000 32.26 8.22 0.00 2.15
307 361 3.039988 CTCGACCGGGCGTATGAT 58.960 61.111 32.26 0.00 0.00 2.45
323 377 3.391382 GGACAGTAGTGGGCGGCT 61.391 66.667 9.56 0.00 0.00 5.52
324 378 4.814294 CGGACAGTAGTGGGCGGC 62.814 72.222 0.00 0.00 0.00 6.53
331 385 2.335316 TTTTGCAACCGGACAGTAGT 57.665 45.000 9.46 0.00 0.00 2.73
332 386 3.915437 AATTTTGCAACCGGACAGTAG 57.085 42.857 9.46 0.00 0.00 2.57
387 443 2.258286 GTGCCAATCAACCCGTGC 59.742 61.111 0.00 0.00 0.00 5.34
389 445 0.035439 CTAGGTGCCAATCAACCCGT 60.035 55.000 0.00 0.00 30.95 5.28
406 462 1.429930 TCCGCCTCATATTTGGGCTA 58.570 50.000 11.69 1.22 43.29 3.93
419 484 0.766674 TAAGCACCCCATATCCGCCT 60.767 55.000 0.00 0.00 0.00 5.52
420 485 0.321653 CTAAGCACCCCATATCCGCC 60.322 60.000 0.00 0.00 0.00 6.13
437 502 2.677524 ACGTGGTAGGCGTGCCTA 60.678 61.111 16.48 16.48 46.14 3.93
447 512 1.586028 GGCCTGTTACGACGTGGTA 59.414 57.895 11.56 6.30 0.00 3.25
527 592 1.203364 AGGGGAGTGGAGTGAAGTGAT 60.203 52.381 0.00 0.00 0.00 3.06
528 593 0.191064 AGGGGAGTGGAGTGAAGTGA 59.809 55.000 0.00 0.00 0.00 3.41
569 634 2.358737 AGAAGGCTGGAAACCGCG 60.359 61.111 0.00 0.00 0.00 6.46
625 690 2.091830 TGACACCCTAGTCGATGGATCT 60.092 50.000 0.00 0.00 41.41 2.75
631 696 1.319541 CGGATGACACCCTAGTCGAT 58.680 55.000 0.00 0.00 41.41 3.59
654 720 0.680921 ACCATTGCCTCATCCAACCG 60.681 55.000 0.00 0.00 0.00 4.44
662 728 0.108186 CGCAGACTACCATTGCCTCA 60.108 55.000 0.00 0.00 34.42 3.86
673 739 2.809181 CGAAGTGCAACGCAGACTA 58.191 52.632 0.00 0.00 45.86 2.59
719 805 2.808315 CCAGCGCTATGGAGTCGT 59.192 61.111 10.99 0.00 43.57 4.34
733 819 2.045536 GAGCACCCCTTGAGCCAG 60.046 66.667 0.00 0.00 0.00 4.85
734 820 4.020617 CGAGCACCCCTTGAGCCA 62.021 66.667 0.00 0.00 0.00 4.75
761 847 1.404843 GGACTACGAGGATTCAGCCT 58.595 55.000 0.00 0.00 42.17 4.58
767 853 1.380785 TGCCGGGACTACGAGGATT 60.381 57.895 2.18 0.00 35.47 3.01
810 1523 1.652012 CGTCGCCTCTCTCTCATCC 59.348 63.158 0.00 0.00 0.00 3.51
812 1525 2.485795 GCCGTCGCCTCTCTCTCAT 61.486 63.158 0.00 0.00 0.00 2.90
813 1526 3.134792 GCCGTCGCCTCTCTCTCA 61.135 66.667 0.00 0.00 0.00 3.27
814 1527 4.244802 CGCCGTCGCCTCTCTCTC 62.245 72.222 0.00 0.00 0.00 3.20
835 1551 2.573462 TCTCTCCCAATAGCAAAGCAGT 59.427 45.455 0.00 0.00 0.00 4.40
836 1552 3.204526 CTCTCTCCCAATAGCAAAGCAG 58.795 50.000 0.00 0.00 0.00 4.24
837 1553 2.573462 ACTCTCTCCCAATAGCAAAGCA 59.427 45.455 0.00 0.00 0.00 3.91
838 1554 3.274095 ACTCTCTCCCAATAGCAAAGC 57.726 47.619 0.00 0.00 0.00 3.51
839 1555 5.707298 TGAAAACTCTCTCCCAATAGCAAAG 59.293 40.000 0.00 0.00 0.00 2.77
841 1557 5.241403 TGAAAACTCTCTCCCAATAGCAA 57.759 39.130 0.00 0.00 0.00 3.91
842 1558 4.908601 TGAAAACTCTCTCCCAATAGCA 57.091 40.909 0.00 0.00 0.00 3.49
908 1672 2.117423 TGAGGGACAGCGTCAGGA 59.883 61.111 10.14 0.00 33.68 3.86
911 1675 2.276116 GGAGTGAGGGACAGCGTCA 61.276 63.158 10.14 0.00 33.68 4.35
914 1678 2.997315 TGGGAGTGAGGGACAGCG 60.997 66.667 0.00 0.00 0.00 5.18
915 1679 2.217038 TGTGGGAGTGAGGGACAGC 61.217 63.158 0.00 0.00 0.00 4.40
917 1681 2.207229 CGTGTGGGAGTGAGGGACA 61.207 63.158 0.00 0.00 0.00 4.02
919 1683 3.311110 GCGTGTGGGAGTGAGGGA 61.311 66.667 0.00 0.00 0.00 4.20
920 1684 4.394712 GGCGTGTGGGAGTGAGGG 62.395 72.222 0.00 0.00 0.00 4.30
977 1753 2.436115 GCGGGTGCTTGTAGGTCC 60.436 66.667 0.00 0.00 38.39 4.46
1235 2014 1.208706 GAGGAAGAAAGGGGGAGGAG 58.791 60.000 0.00 0.00 0.00 3.69
1238 2017 1.208706 GAGGAGGAAGAAAGGGGGAG 58.791 60.000 0.00 0.00 0.00 4.30
1242 2021 1.209261 GAGCAGAGGAGGAAGAAAGGG 59.791 57.143 0.00 0.00 0.00 3.95
1245 2024 1.280457 GGGAGCAGAGGAGGAAGAAA 58.720 55.000 0.00 0.00 0.00 2.52
1270 2050 0.907486 TGATTGAGCCTGGACTGGAG 59.093 55.000 0.00 0.00 0.00 3.86
1278 2071 0.942962 GCGGATCTTGATTGAGCCTG 59.057 55.000 0.00 0.00 40.11 4.85
1303 2096 0.322456 GGTACATCCACCTGCAGCAA 60.322 55.000 8.66 0.00 35.55 3.91
1423 2243 4.864334 CATCGGAGCTGGGTGGGC 62.864 72.222 0.00 0.00 0.00 5.36
1449 2269 1.790387 GCATCCTTATCCGCATCGC 59.210 57.895 0.00 0.00 0.00 4.58
1453 2273 1.069090 GTCCGCATCCTTATCCGCA 59.931 57.895 0.00 0.00 0.00 5.69
1454 2274 1.668151 GGTCCGCATCCTTATCCGC 60.668 63.158 0.00 0.00 0.00 5.54
1455 2275 0.038159 GAGGTCCGCATCCTTATCCG 60.038 60.000 0.00 0.00 35.20 4.18
1457 2277 0.959553 TCGAGGTCCGCATCCTTATC 59.040 55.000 0.00 0.00 38.37 1.75
1458 2278 0.674534 GTCGAGGTCCGCATCCTTAT 59.325 55.000 0.00 0.00 38.37 1.73
1459 2279 0.395311 AGTCGAGGTCCGCATCCTTA 60.395 55.000 0.00 0.00 38.37 2.69
1460 2280 1.258445 AAGTCGAGGTCCGCATCCTT 61.258 55.000 0.00 0.00 38.37 3.36
1461 2281 1.668101 GAAGTCGAGGTCCGCATCCT 61.668 60.000 0.00 0.00 38.37 3.24
1555 2411 8.470002 AGCAATGAACAAGTTAAAGAAAGAAGT 58.530 29.630 0.00 0.00 0.00 3.01
1565 2421 6.691754 TCAGTTGAGCAATGAACAAGTTAA 57.308 33.333 0.00 0.00 0.00 2.01
1566 2422 6.691754 TTCAGTTGAGCAATGAACAAGTTA 57.308 33.333 0.00 0.00 0.00 2.24
1567 2423 5.581126 TTCAGTTGAGCAATGAACAAGTT 57.419 34.783 0.00 0.00 0.00 2.66
1575 2431 3.316029 TGGTTCAGTTCAGTTGAGCAATG 59.684 43.478 0.00 0.00 0.00 2.82
1625 2519 3.004752 ACTTGTTGTGAAGCTGGAACT 57.995 42.857 0.00 0.00 0.00 3.01
1638 2558 4.022589 AGTCAATCAGGCATTCACTTGTTG 60.023 41.667 0.00 0.00 0.00 3.33
1640 2560 3.755378 GAGTCAATCAGGCATTCACTTGT 59.245 43.478 0.00 0.00 22.88 3.16
1644 2564 2.097142 GCAGAGTCAATCAGGCATTCAC 59.903 50.000 0.00 0.00 32.47 3.18
1651 2573 2.619147 CAGACAGCAGAGTCAATCAGG 58.381 52.381 6.72 0.00 40.98 3.86
1667 2589 0.938713 GAGCATGAGCATGAGCAGAC 59.061 55.000 14.27 0.00 45.49 3.51
1668 2590 0.539986 TGAGCATGAGCATGAGCAGA 59.460 50.000 14.27 0.00 45.49 4.26
1670 2592 1.308998 CATGAGCATGAGCATGAGCA 58.691 50.000 18.17 10.53 45.49 4.26
1675 2597 0.537600 GAGGGCATGAGCATGAGCAT 60.538 55.000 14.27 0.00 45.49 3.79
1707 2629 1.705337 CCATGGACTTGTTAGCGGCG 61.705 60.000 5.56 0.51 0.00 6.46
1713 2635 2.679639 GCATCCGTCCATGGACTTGTTA 60.680 50.000 35.84 19.76 41.85 2.41
1786 2708 0.390472 GGTCGAAGCCCAGAAGACTG 60.390 60.000 0.00 0.00 43.12 3.51
1802 2729 4.201685 CGTTATGTCTGAATTTGACGGGTC 60.202 45.833 7.65 0.00 37.26 4.46
1807 2734 3.091417 GCGCGTTATGTCTGAATTTGAC 58.909 45.455 8.43 5.82 35.21 3.18
1808 2735 3.000041 AGCGCGTTATGTCTGAATTTGA 59.000 40.909 8.43 0.00 0.00 2.69
1827 2754 4.501743 GGCTGGTAGGTACAGAAAGATAGC 60.502 50.000 0.00 0.00 38.20 2.97
1848 2777 0.109412 GCATGAACAGAGCAACAGGC 60.109 55.000 0.00 0.00 45.30 4.85
1866 2798 7.118971 GGATATGTGAGATAGTTCCAATCAAGC 59.881 40.741 0.00 0.00 0.00 4.01
1896 2828 4.651585 CCAAATGGTGGTTGTGCG 57.348 55.556 0.00 0.00 43.20 5.34
1905 2837 7.179338 TGTTATTGGTTAGTAATGCCAAATGGT 59.821 33.333 8.57 0.00 44.26 3.55
1908 2840 7.179338 TGGTGTTATTGGTTAGTAATGCCAAAT 59.821 33.333 8.57 2.54 44.26 2.32
1912 2844 5.067283 CCTGGTGTTATTGGTTAGTAATGCC 59.933 44.000 0.00 0.00 0.00 4.40
1913 2845 5.449999 GCCTGGTGTTATTGGTTAGTAATGC 60.450 44.000 0.00 0.00 0.00 3.56
1914 2846 5.067283 GGCCTGGTGTTATTGGTTAGTAATG 59.933 44.000 0.00 0.00 0.00 1.90
1915 2847 5.198207 GGCCTGGTGTTATTGGTTAGTAAT 58.802 41.667 0.00 0.00 0.00 1.89
1917 2849 3.054213 GGGCCTGGTGTTATTGGTTAGTA 60.054 47.826 0.84 0.00 0.00 1.82
1918 2850 2.291346 GGGCCTGGTGTTATTGGTTAGT 60.291 50.000 0.84 0.00 0.00 2.24
1919 2851 2.375146 GGGCCTGGTGTTATTGGTTAG 58.625 52.381 0.84 0.00 0.00 2.34
1920 2852 1.006162 GGGGCCTGGTGTTATTGGTTA 59.994 52.381 0.84 0.00 0.00 2.85
1921 2853 0.252057 GGGGCCTGGTGTTATTGGTT 60.252 55.000 0.84 0.00 0.00 3.67
1922 2854 1.386550 GGGGCCTGGTGTTATTGGT 59.613 57.895 0.84 0.00 0.00 3.67
1923 2855 0.970427 GTGGGGCCTGGTGTTATTGG 60.970 60.000 0.84 0.00 0.00 3.16
1926 2858 1.691219 CAGTGGGGCCTGGTGTTAT 59.309 57.895 0.84 0.00 0.00 1.89
1927 2859 3.166434 CAGTGGGGCCTGGTGTTA 58.834 61.111 0.84 0.00 0.00 2.41
1944 3074 6.095432 AGATGTGATCATAACTCTAGTGGC 57.905 41.667 0.00 0.00 34.06 5.01
1972 3102 5.200368 AGCACAGAATTTTGGGTAACAAG 57.800 39.130 0.00 0.00 40.82 3.16
1999 3129 1.625818 GACTGGGACACTGACAAGGAT 59.374 52.381 0.00 0.00 0.00 3.24
2005 3135 2.447244 CAGAAGACTGGGACACTGAC 57.553 55.000 0.00 0.00 40.14 3.51
2044 3183 9.627123 TGCTATATTTTTGCAGATAAAGTAGGT 57.373 29.630 0.00 0.00 32.55 3.08
2091 3230 8.571461 TTGCATCAATCAATTATCTCCTATCC 57.429 34.615 0.00 0.00 0.00 2.59
2106 3245 6.645790 AACAGAATAGGGATTGCATCAATC 57.354 37.500 10.23 10.23 46.52 2.67
2110 3249 5.709164 AGCATAACAGAATAGGGATTGCATC 59.291 40.000 0.00 0.00 0.00 3.91
2113 3252 6.486657 TGTAAGCATAACAGAATAGGGATTGC 59.513 38.462 0.00 0.00 0.00 3.56
2114 3253 8.627208 ATGTAAGCATAACAGAATAGGGATTG 57.373 34.615 0.00 0.00 32.73 2.67
2118 3257 8.450578 TCAAATGTAAGCATAACAGAATAGGG 57.549 34.615 0.00 0.00 34.39 3.53
2122 3273 8.523915 TCCATCAAATGTAAGCATAACAGAAT 57.476 30.769 0.00 0.00 34.39 2.40
2126 3277 8.929827 CATTTCCATCAAATGTAAGCATAACA 57.070 30.769 0.00 0.00 44.55 2.41
2147 3298 4.952335 GGAAGGTGATGAGGATTGACATTT 59.048 41.667 0.00 0.00 0.00 2.32
2154 3305 2.854967 ACCATGGAAGGTGATGAGGATT 59.145 45.455 21.47 0.00 41.30 3.01
2172 3323 0.324738 TGGGCTTGACACCAAAACCA 60.325 50.000 0.00 0.00 36.43 3.67
2353 3504 5.766670 AGTCACAAGTATATTACCGATCGGA 59.233 40.000 39.55 19.90 38.96 4.55
2356 3507 6.583050 GCAGAGTCACAAGTATATTACCGATC 59.417 42.308 0.00 0.00 0.00 3.69
2359 3510 4.982916 GGCAGAGTCACAAGTATATTACCG 59.017 45.833 0.00 0.00 0.00 4.02
2371 3522 3.834813 AGAATACAGAAGGCAGAGTCACA 59.165 43.478 0.00 0.00 0.00 3.58
2375 3526 5.515106 AGAGTAGAATACAGAAGGCAGAGT 58.485 41.667 0.00 0.00 46.26 3.24
2397 3548 1.517276 CGCGTGCCGATTTAGTCTTAG 59.483 52.381 0.00 0.00 40.02 2.18
2398 3549 1.552226 CGCGTGCCGATTTAGTCTTA 58.448 50.000 0.00 0.00 40.02 2.10
2414 3565 1.070577 GCATCTTATAACAGCACCGCG 60.071 52.381 0.00 0.00 0.00 6.46
2417 3568 5.997746 TCATTAGGCATCTTATAACAGCACC 59.002 40.000 0.00 0.00 0.00 5.01
2431 3582 4.885907 CAGACCAATTCACTCATTAGGCAT 59.114 41.667 0.00 0.00 0.00 4.40
2441 3596 1.901591 CACCTGCAGACCAATTCACT 58.098 50.000 17.39 0.00 0.00 3.41
2445 3600 0.469705 TTGGCACCTGCAGACCAATT 60.470 50.000 23.69 0.00 44.36 2.32
2446 3601 1.153524 TTGGCACCTGCAGACCAAT 59.846 52.632 23.69 1.19 44.36 3.16
2452 3607 2.489275 AAACCGTTGGCACCTGCAG 61.489 57.895 6.78 6.78 44.36 4.41
2462 3617 2.050442 GCCGAAGCCAAACCGTTG 60.050 61.111 0.00 0.00 34.25 4.10
2465 3620 3.788766 CTCGCCGAAGCCAAACCG 61.789 66.667 0.00 0.00 34.57 4.44
2564 3719 0.038166 AATCCTGTGTGGCGGTGAAT 59.962 50.000 0.00 0.00 35.26 2.57
2585 3740 1.532007 GCGACCACATTAAACGGTGAA 59.468 47.619 6.80 0.00 37.18 3.18
2588 3743 0.035739 AGGCGACCACATTAAACGGT 59.964 50.000 0.00 0.00 35.12 4.83
2627 3782 3.579586 TGAGACGGTTGGTTACCTTGTAT 59.420 43.478 2.07 0.00 45.40 2.29
2644 3800 2.663826 AGAAGTGAATCCGCTGAGAC 57.336 50.000 0.00 0.00 32.63 3.36
2646 3802 4.116747 ACTTAGAAGTGAATCCGCTGAG 57.883 45.455 0.00 0.00 37.98 3.35
2647 3803 4.537135 AACTTAGAAGTGAATCCGCTGA 57.463 40.909 0.00 0.00 39.66 4.26
2652 3808 7.674471 ACAGCTAAAACTTAGAAGTGAATCC 57.326 36.000 0.00 0.00 39.66 3.01
2683 3854 9.985730 ATCAATTATGCAGAAAAGAAAAGACAA 57.014 25.926 0.00 0.00 0.00 3.18
2712 3884 6.179040 CAAAGAGAAATCAGGGACTTGATCT 58.821 40.000 0.00 0.00 34.60 2.75
2715 3887 4.104738 ACCAAAGAGAAATCAGGGACTTGA 59.895 41.667 0.00 0.00 34.60 3.02
2716 3888 4.401925 ACCAAAGAGAAATCAGGGACTTG 58.598 43.478 0.00 0.00 34.60 3.16
2717 3889 4.507512 GGACCAAAGAGAAATCAGGGACTT 60.508 45.833 0.00 0.00 34.60 3.01
2718 3890 3.009584 GGACCAAAGAGAAATCAGGGACT 59.990 47.826 0.00 0.00 43.88 3.85
2719 3891 3.348119 GGACCAAAGAGAAATCAGGGAC 58.652 50.000 0.00 0.00 0.00 4.46
2720 3892 2.027192 CGGACCAAAGAGAAATCAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2721 3893 2.027192 TCGGACCAAAGAGAAATCAGGG 60.027 50.000 0.00 0.00 0.00 4.45
2722 3894 3.003480 GTCGGACCAAAGAGAAATCAGG 58.997 50.000 0.00 0.00 0.00 3.86
2723 3895 3.664107 TGTCGGACCAAAGAGAAATCAG 58.336 45.455 5.55 0.00 0.00 2.90
2724 3896 3.762407 TGTCGGACCAAAGAGAAATCA 57.238 42.857 5.55 0.00 0.00 2.57
2725 3897 4.508662 AGATGTCGGACCAAAGAGAAATC 58.491 43.478 5.55 0.00 0.00 2.17
2726 3898 4.559862 AGATGTCGGACCAAAGAGAAAT 57.440 40.909 5.55 0.00 0.00 2.17
2727 3899 4.065088 CAAGATGTCGGACCAAAGAGAAA 58.935 43.478 5.55 0.00 0.00 2.52
2730 3917 1.734465 GCAAGATGTCGGACCAAAGAG 59.266 52.381 5.55 0.00 0.00 2.85
2738 3925 2.837498 CACATATGGCAAGATGTCGGA 58.163 47.619 13.69 0.00 36.08 4.55
2763 3950 8.678199 ACTGAAAAGAAATAATACCAAGCTAGC 58.322 33.333 6.62 6.62 0.00 3.42
2783 3970 9.587772 GCAGAACTTACTCAGATTATACTGAAA 57.412 33.333 0.00 0.00 44.62 2.69
2784 3971 8.198109 GGCAGAACTTACTCAGATTATACTGAA 58.802 37.037 0.00 0.00 44.62 3.02
2785 3972 7.342026 TGGCAGAACTTACTCAGATTATACTGA 59.658 37.037 0.00 0.00 43.39 3.41
2786 3973 7.492524 TGGCAGAACTTACTCAGATTATACTG 58.507 38.462 0.00 0.00 39.02 2.74
2787 3974 7.661536 TGGCAGAACTTACTCAGATTATACT 57.338 36.000 0.00 0.00 0.00 2.12
2788 3975 7.928706 ACATGGCAGAACTTACTCAGATTATAC 59.071 37.037 0.00 0.00 0.00 1.47
2789 3976 7.928167 CACATGGCAGAACTTACTCAGATTATA 59.072 37.037 0.00 0.00 0.00 0.98
2790 3977 6.765036 CACATGGCAGAACTTACTCAGATTAT 59.235 38.462 0.00 0.00 0.00 1.28
2791 3978 6.108687 CACATGGCAGAACTTACTCAGATTA 58.891 40.000 0.00 0.00 0.00 1.75
2792 3979 4.940046 CACATGGCAGAACTTACTCAGATT 59.060 41.667 0.00 0.00 0.00 2.40
2793 3980 4.019860 ACACATGGCAGAACTTACTCAGAT 60.020 41.667 0.00 0.00 0.00 2.90
2794 3981 3.324846 ACACATGGCAGAACTTACTCAGA 59.675 43.478 0.00 0.00 0.00 3.27
2795 3982 3.434641 CACACATGGCAGAACTTACTCAG 59.565 47.826 0.00 0.00 0.00 3.35
2796 3983 3.402110 CACACATGGCAGAACTTACTCA 58.598 45.455 0.00 0.00 0.00 3.41
2797 3984 2.160417 GCACACATGGCAGAACTTACTC 59.840 50.000 0.00 0.00 0.00 2.59
2798 3985 2.154462 GCACACATGGCAGAACTTACT 58.846 47.619 0.00 0.00 0.00 2.24
2799 3986 2.619013 GCACACATGGCAGAACTTAC 57.381 50.000 0.00 0.00 0.00 2.34
2809 3996 4.789012 AAATCAAGTTAGGCACACATGG 57.211 40.909 0.00 0.00 0.00 3.66
2810 3997 5.531634 ACAAAATCAAGTTAGGCACACATG 58.468 37.500 0.00 0.00 0.00 3.21
2811 3998 5.789643 ACAAAATCAAGTTAGGCACACAT 57.210 34.783 0.00 0.00 0.00 3.21
2812 3999 5.590530 AACAAAATCAAGTTAGGCACACA 57.409 34.783 0.00 0.00 0.00 3.72
2813 4000 5.462068 GGAAACAAAATCAAGTTAGGCACAC 59.538 40.000 0.00 0.00 0.00 3.82
2814 4001 5.127845 TGGAAACAAAATCAAGTTAGGCACA 59.872 36.000 0.00 0.00 37.44 4.57
2815 4002 5.596845 TGGAAACAAAATCAAGTTAGGCAC 58.403 37.500 0.00 0.00 37.44 5.01
2816 4003 5.860941 TGGAAACAAAATCAAGTTAGGCA 57.139 34.783 0.00 0.00 37.44 4.75
2826 4013 8.044583 CAGGTCGTACTGAATGGAAACAAAATC 61.045 40.741 3.55 0.00 42.16 2.17
2827 4014 6.293955 CAGGTCGTACTGAATGGAAACAAAAT 60.294 38.462 3.55 0.00 42.16 1.82
2831 4018 3.322541 TCAGGTCGTACTGAATGGAAACA 59.677 43.478 8.88 0.00 44.03 2.83
2832 4019 3.921677 TCAGGTCGTACTGAATGGAAAC 58.078 45.455 8.88 0.00 44.03 2.78
2838 4025 2.563179 ACTTGCTCAGGTCGTACTGAAT 59.437 45.455 11.68 0.00 46.05 2.57
2849 4036 2.486472 ATGGACAGAACTTGCTCAGG 57.514 50.000 0.00 0.00 0.00 3.86
2867 4054 5.408604 GTGATCGAACAGGACAGTGTTAAAT 59.591 40.000 0.00 0.00 40.83 1.40
2894 4081 1.415374 CTGTGTTTACTGACGGGTCG 58.585 55.000 0.00 0.00 0.00 4.79
2897 4084 1.069513 TCACCTGTGTTTACTGACGGG 59.930 52.381 0.00 0.00 43.37 5.28
2906 4093 2.684881 CAAGAAGCAGTCACCTGTGTTT 59.315 45.455 0.00 0.00 41.02 2.83
2927 4114 8.660373 CCAAAACTGAAGTATTATCTCAGTGAC 58.340 37.037 4.81 0.00 40.92 3.67
2929 4116 7.066284 CCCCAAAACTGAAGTATTATCTCAGTG 59.934 40.741 4.81 0.00 40.92 3.66
2944 4131 2.525592 CCTGGCCCCCAAAACTGA 59.474 61.111 0.00 0.00 30.80 3.41
2956 4143 1.818555 CAGCTAAAATGGCCCTGGC 59.181 57.895 0.00 0.00 41.06 4.85
2957 4144 0.685458 AGCAGCTAAAATGGCCCTGG 60.685 55.000 0.00 0.00 0.00 4.45
2958 4145 1.135721 GAAGCAGCTAAAATGGCCCTG 59.864 52.381 0.00 0.00 0.00 4.45
2959 4146 1.272648 TGAAGCAGCTAAAATGGCCCT 60.273 47.619 0.00 0.00 0.00 5.19
2960 4147 1.185315 TGAAGCAGCTAAAATGGCCC 58.815 50.000 0.00 0.00 0.00 5.80
2961 4148 2.482490 CCATGAAGCAGCTAAAATGGCC 60.482 50.000 14.80 0.00 0.00 5.36
2962 4149 2.482490 CCCATGAAGCAGCTAAAATGGC 60.482 50.000 19.18 0.00 34.49 4.40
2963 4150 2.762327 ACCCATGAAGCAGCTAAAATGG 59.238 45.455 18.21 18.21 35.39 3.16
2969 4156 0.034186 CCCAACCCATGAAGCAGCTA 60.034 55.000 0.00 0.00 0.00 3.32
2979 4166 2.644151 AGACTTAGAACCCCAACCCAT 58.356 47.619 0.00 0.00 0.00 4.00
2982 4169 4.576879 CTGTTAGACTTAGAACCCCAACC 58.423 47.826 0.00 0.00 0.00 3.77
2986 4173 4.554960 AAGCTGTTAGACTTAGAACCCC 57.445 45.455 0.00 0.00 0.00 4.95
2987 4174 5.179555 CACAAAGCTGTTAGACTTAGAACCC 59.820 44.000 0.00 0.00 31.64 4.11
2989 4176 5.680893 GCACAAAGCTGTTAGACTTAGAAC 58.319 41.667 0.00 0.00 41.15 3.01
2990 4177 5.924475 GCACAAAGCTGTTAGACTTAGAA 57.076 39.130 0.00 0.00 41.15 2.10
3004 4191 0.315251 GGGAGGAACAAGCACAAAGC 59.685 55.000 0.00 0.00 46.19 3.51
3005 4192 1.691196 TGGGAGGAACAAGCACAAAG 58.309 50.000 0.00 0.00 0.00 2.77
3006 4193 2.380064 ATGGGAGGAACAAGCACAAA 57.620 45.000 0.00 0.00 0.00 2.83
3007 4194 2.380064 AATGGGAGGAACAAGCACAA 57.620 45.000 0.00 0.00 0.00 3.33
3009 4196 2.627699 TGAAAATGGGAGGAACAAGCAC 59.372 45.455 0.00 0.00 0.00 4.40
3012 4199 4.829492 AGAACTGAAAATGGGAGGAACAAG 59.171 41.667 0.00 0.00 0.00 3.16
3033 4222 3.803715 GCTTGTCAGTTGGAGCAGTAAGA 60.804 47.826 0.00 0.00 35.29 2.10
3036 4225 1.270839 GGCTTGTCAGTTGGAGCAGTA 60.271 52.381 0.00 0.00 36.87 2.74
3063 4252 8.416329 GGGAATATCACAAAATCAAGTAATGCT 58.584 33.333 0.00 0.00 0.00 3.79
3067 4256 6.183360 GGCGGGAATATCACAAAATCAAGTAA 60.183 38.462 0.00 0.00 0.00 2.24
3069 4258 4.097892 GGCGGGAATATCACAAAATCAAGT 59.902 41.667 0.00 0.00 0.00 3.16
3078 4267 1.125093 ATCGGGGCGGGAATATCACA 61.125 55.000 0.00 0.00 0.00 3.58
3105 4294 2.032634 GCGGAATGTGTTCTCGGCA 61.033 57.895 0.00 0.00 34.68 5.69
3117 4306 1.111715 GGTAGTACGGAGGGCGGAAT 61.112 60.000 0.00 0.00 0.00 3.01
3165 4354 2.735663 CTCGTATACGCCGTAGATCAGT 59.264 50.000 20.42 0.00 39.60 3.41
3201 4390 6.238648 AGTTCAGTTCAGTTTATACCAAGGG 58.761 40.000 0.00 0.00 0.00 3.95
3205 4394 9.787435 ATAACAAGTTCAGTTCAGTTTATACCA 57.213 29.630 0.00 0.00 0.00 3.25
3232 4421 7.931578 TTCAGTAAAGGACTTCAAGAAACAA 57.068 32.000 0.00 0.00 35.64 2.83
3239 4428 7.392113 TCAGTTTGTTTCAGTAAAGGACTTCAA 59.608 33.333 0.00 0.00 35.64 2.69
3247 4436 8.850452 GTTCAAGTTCAGTTTGTTTCAGTAAAG 58.150 33.333 0.00 0.00 0.00 1.85
3250 4439 7.681939 AGTTCAAGTTCAGTTTGTTTCAGTA 57.318 32.000 0.00 0.00 0.00 2.74
3251 4440 6.575162 AGTTCAAGTTCAGTTTGTTTCAGT 57.425 33.333 0.00 0.00 0.00 3.41
3252 4441 6.183360 GCAAGTTCAAGTTCAGTTTGTTTCAG 60.183 38.462 0.00 0.00 0.00 3.02
3253 4442 5.633182 GCAAGTTCAAGTTCAGTTTGTTTCA 59.367 36.000 0.00 0.00 0.00 2.69
3254 4443 5.220024 CGCAAGTTCAAGTTCAGTTTGTTTC 60.220 40.000 0.00 0.00 0.00 2.78
3255 4444 4.621034 CGCAAGTTCAAGTTCAGTTTGTTT 59.379 37.500 0.00 0.00 0.00 2.83
3256 4445 4.083003 TCGCAAGTTCAAGTTCAGTTTGTT 60.083 37.500 0.00 0.00 39.48 2.83
3257 4446 3.438781 TCGCAAGTTCAAGTTCAGTTTGT 59.561 39.130 0.00 0.00 39.48 2.83
3258 4447 3.786048 GTCGCAAGTTCAAGTTCAGTTTG 59.214 43.478 0.00 0.00 39.48 2.93
3259 4448 3.485216 CGTCGCAAGTTCAAGTTCAGTTT 60.485 43.478 0.00 0.00 39.48 2.66
3269 4458 3.345808 GCCTGCGTCGCAAGTTCA 61.346 61.111 22.01 0.00 38.41 3.18
3270 4459 2.387125 TTTGCCTGCGTCGCAAGTTC 62.387 55.000 22.01 10.53 46.24 3.01
3272 4461 2.392613 CTTTTGCCTGCGTCGCAAGT 62.393 55.000 22.01 0.00 46.24 3.16
3273 4462 1.727022 CTTTTGCCTGCGTCGCAAG 60.727 57.895 22.01 16.68 46.24 4.01
3344 4535 3.948719 GTCTTGGTGTCCGGCCCA 61.949 66.667 0.00 0.00 0.00 5.36
3518 4709 0.106719 GGGATTTGAGCCCGATCCAA 60.107 55.000 4.23 0.00 40.88 3.53
3545 4736 1.973281 ACTGCCATCTTTGCCGTGG 60.973 57.895 0.00 0.00 36.09 4.94
3548 4739 1.503542 GTCACTGCCATCTTTGCCG 59.496 57.895 0.00 0.00 0.00 5.69
3561 4752 2.495409 TTGTCGCAGGTCCGTCACT 61.495 57.895 0.00 0.00 0.00 3.41
3566 4760 2.738521 CTGGTTGTCGCAGGTCCG 60.739 66.667 0.00 0.00 0.00 4.79
3572 4766 4.600576 TCGCTGCTGGTTGTCGCA 62.601 61.111 0.00 0.00 34.54 5.10
3582 4776 1.446792 CATCCTTGTCGTCGCTGCT 60.447 57.895 0.00 0.00 0.00 4.24
3585 4779 2.125512 GCCATCCTTGTCGTCGCT 60.126 61.111 0.00 0.00 0.00 4.93
3587 4781 1.874019 CTCGCCATCCTTGTCGTCG 60.874 63.158 0.00 0.00 0.00 5.12
3619 4813 2.122783 TTTCATTTCCTACCTGCGGG 57.877 50.000 11.02 11.02 38.88 6.13
3643 4847 9.967346 GTAGTATACATACATATACATGGCCTG 57.033 37.037 3.32 2.01 42.43 4.85
3817 5042 2.119801 ACCAACTGCTCATCACCATC 57.880 50.000 0.00 0.00 0.00 3.51
3866 5095 0.249120 TGGTGAGGGTACAATCAGCG 59.751 55.000 18.24 0.00 43.73 5.18
3895 5124 7.803131 ACAGAATTAACTAGGGGAGGTTTATC 58.197 38.462 0.00 0.00 0.00 1.75
3901 5130 5.903589 TCCTTACAGAATTAACTAGGGGAGG 59.096 44.000 0.00 0.00 0.00 4.30
3947 5176 6.662616 CAGCCACATTATTCCTCTTTATTCG 58.337 40.000 0.00 0.00 0.00 3.34
4013 5258 9.758651 GGAACATACATGTATACTGTCAACATA 57.241 33.333 17.86 0.00 40.80 2.29
4014 5259 8.486210 AGGAACATACATGTATACTGTCAACAT 58.514 33.333 17.86 5.08 40.80 2.71
4015 5260 7.847096 AGGAACATACATGTATACTGTCAACA 58.153 34.615 17.86 0.00 40.80 3.33
4016 5261 9.982651 ATAGGAACATACATGTATACTGTCAAC 57.017 33.333 17.86 7.90 40.80 3.18
4018 5263 9.588096 AGATAGGAACATACATGTATACTGTCA 57.412 33.333 17.86 3.83 40.80 3.58
4019 5264 9.847706 CAGATAGGAACATACATGTATACTGTC 57.152 37.037 17.86 17.90 40.80 3.51
4020 5265 9.368416 ACAGATAGGAACATACATGTATACTGT 57.632 33.333 17.86 11.03 40.80 3.55
4037 5282 8.823220 TGAATCGATATGGATTACAGATAGGA 57.177 34.615 12.36 0.00 36.79 2.94
4045 5290 8.763049 TTCAGTGATGAATCGATATGGATTAC 57.237 34.615 12.36 7.70 36.79 1.89
4056 5301 3.003068 GGCCAGAATTCAGTGATGAATCG 59.997 47.826 8.44 0.00 37.52 3.34
4097 5342 7.946655 TCTGAAGCATTCCGTATAACTAATG 57.053 36.000 0.00 0.00 46.93 1.90
4101 5346 6.823689 ACAATTCTGAAGCATTCCGTATAACT 59.176 34.615 0.00 0.00 46.93 2.24
4103 5348 6.597672 ACACAATTCTGAAGCATTCCGTATAA 59.402 34.615 0.00 0.00 46.93 0.98
4105 5350 4.943705 ACACAATTCTGAAGCATTCCGTAT 59.056 37.500 0.00 0.00 46.93 3.06
4109 5354 3.507233 TCCACACAATTCTGAAGCATTCC 59.493 43.478 0.00 0.00 46.93 3.01
4112 5357 7.255381 GCTTATATCCACACAATTCTGAAGCAT 60.255 37.037 0.00 0.00 35.60 3.79
4130 5376 6.088616 GCCGAATTTGATTTGCTGCTTATATC 59.911 38.462 0.00 0.00 0.00 1.63
4140 5386 2.891112 TGGATGCCGAATTTGATTTGC 58.109 42.857 0.00 0.00 0.00 3.68
4141 5387 4.497300 AGTTGGATGCCGAATTTGATTTG 58.503 39.130 0.00 0.00 0.00 2.32
4142 5388 4.806640 AGTTGGATGCCGAATTTGATTT 57.193 36.364 0.00 0.00 0.00 2.17
4143 5389 4.463891 AGAAGTTGGATGCCGAATTTGATT 59.536 37.500 0.00 0.00 0.00 2.57
4144 5390 4.019174 AGAAGTTGGATGCCGAATTTGAT 58.981 39.130 0.00 0.00 0.00 2.57
4145 5391 3.420893 AGAAGTTGGATGCCGAATTTGA 58.579 40.909 0.00 0.00 0.00 2.69
4146 5392 3.428045 GGAGAAGTTGGATGCCGAATTTG 60.428 47.826 0.00 0.00 0.00 2.32
4147 5393 2.755103 GGAGAAGTTGGATGCCGAATTT 59.245 45.455 0.00 0.00 0.00 1.82
4149 5395 1.561542 AGGAGAAGTTGGATGCCGAAT 59.438 47.619 0.00 0.00 0.00 3.34
4150 5396 0.984230 AGGAGAAGTTGGATGCCGAA 59.016 50.000 0.00 0.00 0.00 4.30
4151 5397 0.984230 AAGGAGAAGTTGGATGCCGA 59.016 50.000 0.00 0.00 0.00 5.54
4152 5398 1.089920 CAAGGAGAAGTTGGATGCCG 58.910 55.000 0.00 0.00 0.00 5.69
4153 5399 2.496899 TCAAGGAGAAGTTGGATGCC 57.503 50.000 0.00 0.00 0.00 4.40
4167 5413 3.988976 TCTCCAGTTCATCCTTCAAGG 57.011 47.619 0.00 0.00 36.46 3.61
4171 5417 3.272574 TGCATCTCCAGTTCATCCTTC 57.727 47.619 0.00 0.00 0.00 3.46
4173 5419 3.947612 AATGCATCTCCAGTTCATCCT 57.052 42.857 0.00 0.00 0.00 3.24
4181 5427 4.882427 AGTCTGAATCAAATGCATCTCCAG 59.118 41.667 0.00 2.67 0.00 3.86
4200 5446 2.104792 TCACAGCCTTAGCAACAAGTCT 59.895 45.455 0.00 0.00 43.56 3.24
4201 5447 2.481952 CTCACAGCCTTAGCAACAAGTC 59.518 50.000 0.00 0.00 43.56 3.01
4204 5450 2.638480 ACTCACAGCCTTAGCAACAA 57.362 45.000 0.00 0.00 43.56 2.83
4208 5454 2.493675 CACTCTACTCACAGCCTTAGCA 59.506 50.000 0.00 0.00 43.56 3.49
4225 5471 5.215160 GTTCCATGAAACAATCACACACTC 58.785 41.667 0.00 0.00 41.93 3.51
4227 5473 4.930963 TGTTCCATGAAACAATCACACAC 58.069 39.130 0.00 0.00 41.93 3.82
4228 5474 4.499526 GCTGTTCCATGAAACAATCACACA 60.500 41.667 0.00 0.00 41.93 3.72
4229 5475 3.983344 GCTGTTCCATGAAACAATCACAC 59.017 43.478 0.00 0.00 41.93 3.82
4263 5509 4.880120 ACCTCATATGCACAATCTTCAGTG 59.120 41.667 0.00 0.00 38.74 3.66
4272 5518 2.705658 CCTCCCTACCTCATATGCACAA 59.294 50.000 0.00 0.00 0.00 3.33
4274 5520 1.625818 CCCTCCCTACCTCATATGCAC 59.374 57.143 0.00 0.00 0.00 4.57
4287 5533 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
4290 5536 3.369388 ACCCTCCCTCCCTCCCTC 61.369 72.222 0.00 0.00 0.00 4.30
4311 5557 1.891150 AGCAAGTTGCCAAGGATTCAG 59.109 47.619 24.02 0.00 46.52 3.02
4316 5562 1.174712 GCAGAGCAAGTTGCCAAGGA 61.175 55.000 24.02 0.00 46.52 3.36
4317 5563 1.288127 GCAGAGCAAGTTGCCAAGG 59.712 57.895 24.02 12.37 46.52 3.61
4328 5574 4.011698 TGATCTAGCAAAAATGCAGAGCA 58.988 39.130 13.26 13.26 44.86 4.26
4335 5581 5.883661 ACATCGGTTGATCTAGCAAAAATG 58.116 37.500 7.13 6.76 30.49 2.32
4342 5588 6.043411 AGACTAAAACATCGGTTGATCTAGC 58.957 40.000 0.00 0.00 37.30 3.42
4350 5596 6.698380 ACATACAGAGACTAAAACATCGGTT 58.302 36.000 0.00 0.00 39.43 4.44
4389 5635 5.095490 GGAATTCAAAGAAGGCAATACGTG 58.905 41.667 7.93 0.00 0.00 4.49
4466 5712 9.472361 GCTTTAACAATTGATCATGATAGCATT 57.528 29.630 13.59 4.57 30.68 3.56
4501 5747 2.655090 TGCATTCACCAGGTCTGAAA 57.345 45.000 0.00 0.00 31.48 2.69
4509 5755 3.766151 CAGCTAAACATGCATTCACCAG 58.234 45.455 0.00 0.00 0.00 4.00
4521 5768 3.287222 AGACCAACAAAGCAGCTAAACA 58.713 40.909 0.00 0.00 0.00 2.83
4540 5787 8.577296 CGACTACTAGGAATTAATCATGGAAGA 58.423 37.037 0.00 0.00 0.00 2.87
4548 5795 8.388484 TCAGTACCGACTACTAGGAATTAATC 57.612 38.462 0.00 0.00 33.53 1.75
4566 5813 5.541845 TGTAGCAATATCAGCATCAGTACC 58.458 41.667 3.33 0.00 0.00 3.34
4572 5819 4.747108 ACGAACTGTAGCAATATCAGCATC 59.253 41.667 0.00 0.00 33.12 3.91
4573 5820 4.697514 ACGAACTGTAGCAATATCAGCAT 58.302 39.130 0.00 0.00 33.12 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.