Multiple sequence alignment - TraesCS7D01G004000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G004000 chr7D 100.000 7532 0 0 1 7532 2242133 2234602 0.000000e+00 13910.0
1 TraesCS7D01G004000 chr7D 90.614 554 41 6 6286 6837 2235300 2234756 0.000000e+00 725.0
2 TraesCS7D01G004000 chr7D 90.631 555 39 9 6834 7378 2235848 2235297 0.000000e+00 725.0
3 TraesCS7D01G004000 chr7A 92.659 2629 133 31 624 3210 1847938 1845328 0.000000e+00 3731.0
4 TraesCS7D01G004000 chr7A 90.079 1139 76 18 3272 4383 1845296 1844168 0.000000e+00 1443.0
5 TraesCS7D01G004000 chr7A 89.147 1161 83 20 4660 5793 1843843 1842699 0.000000e+00 1406.0
6 TraesCS7D01G004000 chr7A 90.778 1041 55 12 5830 6837 1842705 1841673 0.000000e+00 1352.0
7 TraesCS7D01G004000 chr7A 88.688 663 33 14 6834 7457 1842253 1841594 0.000000e+00 771.0
8 TraesCS7D01G004000 chr7A 88.014 584 52 11 39 617 1848896 1848326 0.000000e+00 675.0
9 TraesCS7D01G004000 chr7A 90.000 310 21 6 304 604 58140102 58139794 7.080000e-105 392.0
10 TraesCS7D01G004000 chr7A 91.860 86 2 4 7451 7532 1841518 1841434 1.720000e-21 115.0
11 TraesCS7D01G004000 chr7A 92.105 76 0 3 4467 4536 733336958 733336883 1.340000e-17 102.0
12 TraesCS7D01G004000 chr4A 86.978 1989 157 44 1299 3255 742377319 742379237 0.000000e+00 2145.0
13 TraesCS7D01G004000 chr4A 90.765 1137 82 10 3272 4395 742379338 742380464 0.000000e+00 1496.0
14 TraesCS7D01G004000 chr4A 90.183 1039 62 20 209 1213 742376254 742377286 0.000000e+00 1317.0
15 TraesCS7D01G004000 chr4A 89.310 898 46 14 5984 6831 742382147 742383044 0.000000e+00 1081.0
16 TraesCS7D01G004000 chr4A 87.195 656 26 19 6834 7432 742382450 742383104 0.000000e+00 693.0
17 TraesCS7D01G004000 chr4A 91.042 480 36 2 5519 5998 742381627 742382099 6.370000e-180 641.0
18 TraesCS7D01G004000 chr4A 88.235 527 34 10 4668 5167 742380511 742381036 8.360000e-169 604.0
19 TraesCS7D01G004000 chr4A 93.709 302 19 0 5205 5506 742381215 742381516 3.200000e-123 453.0
20 TraesCS7D01G004000 chrUn 90.323 310 20 6 304 604 291659550 291659242 1.520000e-106 398.0
21 TraesCS7D01G004000 chrUn 89.677 310 22 6 304 604 408262868 408262560 3.300000e-103 387.0
22 TraesCS7D01G004000 chr4B 90.323 310 20 6 304 604 273362821 273363129 1.520000e-106 398.0
23 TraesCS7D01G004000 chr1B 90.000 310 21 6 304 604 73711383 73711691 7.080000e-105 392.0
24 TraesCS7D01G004000 chr1B 90.000 310 21 6 304 604 119304554 119304862 7.080000e-105 392.0
25 TraesCS7D01G004000 chr1B 92.857 70 2 1 4467 4536 642697403 642697337 1.730000e-16 99.0
26 TraesCS7D01G004000 chr1A 89.677 310 21 7 304 604 12487019 12486712 1.190000e-102 385.0
27 TraesCS7D01G004000 chr3D 83.516 364 48 6 4777 5139 66149024 66148672 5.630000e-86 329.0
28 TraesCS7D01G004000 chr3D 83.242 364 49 6 4777 5139 66163300 66162948 2.620000e-84 324.0
29 TraesCS7D01G004000 chr3D 82.692 364 51 6 4777 5139 66267232 66266880 5.670000e-81 313.0
30 TraesCS7D01G004000 chr3D 82.778 360 51 5 4777 5135 66232977 66232628 2.040000e-80 311.0
31 TraesCS7D01G004000 chr2D 88.835 206 20 3 2304 2506 301361842 301362047 4.510000e-62 250.0
32 TraesCS7D01G004000 chr2D 81.364 220 24 11 2670 2884 301362081 301362288 6.050000e-36 163.0
33 TraesCS7D01G004000 chr6D 81.197 234 20 10 7168 7388 417755842 417755620 4.670000e-37 167.0
34 TraesCS7D01G004000 chr6D 81.364 220 18 14 6628 6834 417755842 417755633 2.810000e-34 158.0
35 TraesCS7D01G004000 chr6B 81.197 234 20 10 7168 7388 626453044 626453266 4.670000e-37 167.0
36 TraesCS7D01G004000 chr6B 81.567 217 17 14 6628 6831 626453044 626453250 2.810000e-34 158.0
37 TraesCS7D01G004000 chr6B 94.366 71 3 1 4467 4536 129241255 129241325 2.870000e-19 108.0
38 TraesCS7D01G004000 chr6A 80.349 229 21 10 7168 7383 560207754 560207537 1.310000e-32 152.0
39 TraesCS7D01G004000 chr6A 80.455 220 20 14 6628 6834 560207754 560207545 6.090000e-31 147.0
40 TraesCS7D01G004000 chr6A 98.000 50 1 0 4488 4537 360569383 360569432 3.740000e-13 87.9
41 TraesCS7D01G004000 chr2B 96.667 60 1 1 4485 4543 462893163 462893222 1.730000e-16 99.0
42 TraesCS7D01G004000 chr5B 90.141 71 5 1 4467 4537 479783127 479783195 2.890000e-14 91.6
43 TraesCS7D01G004000 chr5B 86.207 87 6 1 4456 4536 339425849 339425763 1.040000e-13 89.8
44 TraesCS7D01G004000 chr3B 91.429 70 1 3 4488 4557 239907681 239907745 2.890000e-14 91.6
45 TraesCS7D01G004000 chr2A 88.312 77 3 4 4466 4536 705538906 705538830 3.740000e-13 87.9
46 TraesCS7D01G004000 chr5A 96.875 32 0 1 4459 4489 413835875 413835906 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G004000 chr7D 2234602 2242133 7531 True 13910.000000 13910 100.000000 1 7532 1 chr7D.!!$R1 7531
1 TraesCS7D01G004000 chr7D 2234756 2235848 1092 True 725.000000 725 90.622500 6286 7378 2 chr7D.!!$R2 1092
2 TraesCS7D01G004000 chr7A 1841434 1848896 7462 True 1356.142857 3731 90.175000 39 7532 7 chr7A.!!$R3 7493
3 TraesCS7D01G004000 chr4A 742376254 742383104 6850 False 1053.750000 2145 89.677125 209 7432 8 chr4A.!!$F1 7223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 1302 0.178967 TTTTCAGCTGCCCATCCACA 60.179 50.0 9.47 0.00 0.00 4.17 F
2024 2479 0.586319 ACAACTTTGGCGTGACATCG 59.414 50.0 0.00 0.00 0.00 3.84 F
2758 3216 1.167851 TACGTCGATCGACCCAAAGT 58.832 50.0 35.48 28.68 41.76 2.66 F
4482 5057 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
4540 5115 0.030908 CGAACGGAGGGAGTAGATGC 59.969 60.0 0.00 0.00 0.00 3.91 F
5896 6893 0.108804 TCTTCGACATCAGGCCGAAC 60.109 55.0 0.00 0.00 37.39 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 3327 0.034896 AACTCTGCGTACCTGGTTGG 59.965 55.000 3.84 0.0 42.93 3.77 R
2889 3351 0.179078 TGAACACTTAACGCACCGGT 60.179 50.000 0.00 0.0 0.00 5.28 R
4521 5096 0.030908 GCATCTACTCCCTCCGTTCG 59.969 60.000 0.00 0.0 0.00 3.95 R
6245 7305 1.227205 CCAGCAGAGGAGCGACATC 60.227 63.158 0.00 0.0 40.15 3.06 R
6267 7330 3.722147 TCAAGATATCGCTCTTTCAGCC 58.278 45.455 0.00 0.0 46.74 4.85 R
7484 8693 0.538584 TCCAGTGAGCAGGCTATGTG 59.461 55.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.567478 ACCTTCAGTCTTCTGCTTGTT 57.433 42.857 0.00 0.00 41.10 2.83
21 22 3.209410 ACCTTCAGTCTTCTGCTTGTTG 58.791 45.455 0.00 0.00 41.10 3.33
22 23 3.209410 CCTTCAGTCTTCTGCTTGTTGT 58.791 45.455 0.00 0.00 41.10 3.32
23 24 3.003068 CCTTCAGTCTTCTGCTTGTTGTG 59.997 47.826 0.00 0.00 41.10 3.33
24 25 3.266510 TCAGTCTTCTGCTTGTTGTGT 57.733 42.857 0.00 0.00 41.10 3.72
25 26 3.609853 TCAGTCTTCTGCTTGTTGTGTT 58.390 40.909 0.00 0.00 41.10 3.32
26 27 3.374988 TCAGTCTTCTGCTTGTTGTGTTG 59.625 43.478 0.00 0.00 41.10 3.33
27 28 3.127548 CAGTCTTCTGCTTGTTGTGTTGT 59.872 43.478 0.00 0.00 34.79 3.32
28 29 4.332543 CAGTCTTCTGCTTGTTGTGTTGTA 59.667 41.667 0.00 0.00 34.79 2.41
29 30 4.332819 AGTCTTCTGCTTGTTGTGTTGTAC 59.667 41.667 0.00 0.00 0.00 2.90
30 31 4.332819 GTCTTCTGCTTGTTGTGTTGTACT 59.667 41.667 0.00 0.00 0.00 2.73
31 32 4.332543 TCTTCTGCTTGTTGTGTTGTACTG 59.667 41.667 0.00 0.00 0.00 2.74
32 33 3.867857 TCTGCTTGTTGTGTTGTACTGA 58.132 40.909 0.00 0.00 0.00 3.41
33 34 4.257731 TCTGCTTGTTGTGTTGTACTGAA 58.742 39.130 0.00 0.00 0.00 3.02
34 35 4.697828 TCTGCTTGTTGTGTTGTACTGAAA 59.302 37.500 0.00 0.00 0.00 2.69
35 36 5.356751 TCTGCTTGTTGTGTTGTACTGAAAT 59.643 36.000 0.00 0.00 0.00 2.17
36 37 5.577835 TGCTTGTTGTGTTGTACTGAAATC 58.422 37.500 0.00 0.00 0.00 2.17
37 38 5.124617 TGCTTGTTGTGTTGTACTGAAATCA 59.875 36.000 0.00 0.00 0.00 2.57
72 76 9.847706 GACAGTATACATGTATGTTCCTATCTG 57.152 37.037 25.48 19.17 41.97 2.90
124 128 1.470098 CCATCAGTTAGTTGCACCTGC 59.530 52.381 0.00 0.00 42.50 4.85
139 143 4.124238 GCACCTGCATTAGTTATACGGAA 58.876 43.478 0.00 0.00 41.59 4.30
157 162 3.671433 CGGAATGCTTCAGAATTGTGTGG 60.671 47.826 2.11 0.00 0.00 4.17
167 172 7.558161 TTCAGAATTGTGTGGATATAAGCAG 57.442 36.000 2.11 0.00 0.00 4.24
168 173 5.528690 TCAGAATTGTGTGGATATAAGCAGC 59.471 40.000 2.11 0.00 0.00 5.25
169 174 5.297527 CAGAATTGTGTGGATATAAGCAGCA 59.702 40.000 0.00 0.00 0.00 4.41
170 175 5.887598 AGAATTGTGTGGATATAAGCAGCAA 59.112 36.000 0.00 0.00 0.00 3.91
171 176 6.377996 AGAATTGTGTGGATATAAGCAGCAAA 59.622 34.615 0.00 0.00 0.00 3.68
172 177 6.720112 ATTGTGTGGATATAAGCAGCAAAT 57.280 33.333 0.00 0.00 0.00 2.32
173 178 5.756195 TGTGTGGATATAAGCAGCAAATC 57.244 39.130 0.00 0.00 0.00 2.17
174 179 5.192176 TGTGTGGATATAAGCAGCAAATCA 58.808 37.500 0.00 0.00 0.00 2.57
176 181 6.152492 TGTGTGGATATAAGCAGCAAATCAAA 59.848 34.615 0.00 0.00 0.00 2.69
177 182 7.147863 TGTGTGGATATAAGCAGCAAATCAAAT 60.148 33.333 0.00 0.00 0.00 2.32
178 183 7.707893 GTGTGGATATAAGCAGCAAATCAAATT 59.292 33.333 0.00 0.00 0.00 1.82
179 184 7.922278 TGTGGATATAAGCAGCAAATCAAATTC 59.078 33.333 0.00 0.00 0.00 2.17
180 185 7.113965 GTGGATATAAGCAGCAAATCAAATTCG 59.886 37.037 0.00 0.00 0.00 3.34
181 186 6.583806 GGATATAAGCAGCAAATCAAATTCGG 59.416 38.462 0.00 0.00 0.00 4.30
189 194 3.062504 GCAAATCAAATTCGGCATCCAAC 59.937 43.478 0.00 0.00 0.00 3.77
194 199 3.440173 TCAAATTCGGCATCCAACTTCTC 59.560 43.478 0.00 0.00 0.00 2.87
198 203 1.089920 CGGCATCCAACTTCTCCTTG 58.910 55.000 0.00 0.00 0.00 3.61
200 205 2.795329 GGCATCCAACTTCTCCTTGAA 58.205 47.619 0.00 0.00 0.00 2.69
227 232 5.011586 TGAACTGGAGATGCATTTGATTCA 58.988 37.500 0.00 4.45 0.00 2.57
228 233 5.124936 TGAACTGGAGATGCATTTGATTCAG 59.875 40.000 0.00 4.87 0.00 3.02
231 236 4.851843 TGGAGATGCATTTGATTCAGACT 58.148 39.130 0.00 0.00 0.00 3.24
235 240 6.349944 GGAGATGCATTTGATTCAGACTTGTT 60.350 38.462 0.00 0.00 0.00 2.83
252 257 3.319137 TGTTGCTAAGGCTGTGAGTAG 57.681 47.619 0.00 0.00 39.59 2.57
254 259 3.056536 TGTTGCTAAGGCTGTGAGTAGAG 60.057 47.826 0.00 0.00 39.59 2.43
255 260 2.808919 TGCTAAGGCTGTGAGTAGAGT 58.191 47.619 0.00 0.00 39.59 3.24
256 261 2.493675 TGCTAAGGCTGTGAGTAGAGTG 59.506 50.000 0.00 0.00 39.59 3.51
317 325 4.630644 AGATTGTGCATATGAGGTAGGG 57.369 45.455 6.97 0.00 0.00 3.53
322 334 1.507742 TGCATATGAGGTAGGGAGGGA 59.492 52.381 6.97 0.00 0.00 4.20
323 335 2.183679 GCATATGAGGTAGGGAGGGAG 58.816 57.143 6.97 0.00 0.00 4.30
324 336 2.826488 CATATGAGGTAGGGAGGGAGG 58.174 57.143 0.00 0.00 0.00 4.30
325 337 1.167943 TATGAGGTAGGGAGGGAGGG 58.832 60.000 0.00 0.00 0.00 4.30
344 356 3.644953 AGGGAGGGTCCTCTGAATC 57.355 57.895 15.74 0.10 42.38 2.52
369 381 2.222445 GGCAACTTGCTCTGCATTTTTG 59.778 45.455 13.43 0.00 44.28 2.44
377 398 4.011698 TGCTCTGCATTTTTGCTAGATCA 58.988 39.130 0.00 1.07 31.71 2.92
416 437 6.863645 TCTCTGTATGTAATTAATGCTCGAGC 59.136 38.462 30.42 30.42 42.50 5.03
548 573 2.885135 TTCAGACCTGGTGAATGCAT 57.115 45.000 2.82 0.00 0.00 3.96
560 585 3.367703 GGTGAATGCATGTTTAGCTGCTT 60.368 43.478 7.79 0.00 39.16 3.91
593 618 8.577296 TCTTCCATGATTAATTCCTAGTAGTCG 58.423 37.037 0.00 0.00 0.00 4.18
617 642 5.636965 GGTACTGATGCTGATATTGCTACAG 59.363 44.000 17.11 17.11 38.76 2.74
642 1051 6.228273 TCGTTCACATTGAGAAAGAACATC 57.772 37.500 9.29 0.00 38.71 3.06
646 1055 6.940831 TCACATTGAGAAAGAACATCAACA 57.059 33.333 0.00 0.00 35.89 3.33
679 1088 1.789576 AAGGGGGCGACAAACTCCAT 61.790 55.000 0.00 0.00 0.00 3.41
681 1090 0.182775 GGGGGCGACAAACTCCATAT 59.817 55.000 0.00 0.00 0.00 1.78
682 1091 1.308998 GGGGCGACAAACTCCATATG 58.691 55.000 0.00 0.00 0.00 1.78
705 1114 6.244654 TGGAAATCGGCCAAATATATCATCA 58.755 36.000 2.24 0.00 31.13 3.07
752 1161 3.064207 TGCACCTACGAAATTCACACTC 58.936 45.455 0.00 0.00 0.00 3.51
885 1295 2.278330 CCCTGGTTTTCAGCTGCCC 61.278 63.158 9.47 6.72 42.05 5.36
887 1297 0.901580 CCTGGTTTTCAGCTGCCCAT 60.902 55.000 9.47 0.00 42.05 4.00
889 1299 0.899717 TGGTTTTCAGCTGCCCATCC 60.900 55.000 9.47 8.20 0.00 3.51
891 1301 0.244721 GTTTTCAGCTGCCCATCCAC 59.755 55.000 9.47 0.00 0.00 4.02
892 1302 0.178967 TTTTCAGCTGCCCATCCACA 60.179 50.000 9.47 0.00 0.00 4.17
893 1303 0.895100 TTTCAGCTGCCCATCCACAC 60.895 55.000 9.47 0.00 0.00 3.82
913 1334 1.372128 CAGCACGCAAAAGGAAGGC 60.372 57.895 0.00 0.00 0.00 4.35
972 1393 3.432252 CCCGGAGATATAAACACATTCGC 59.568 47.826 0.73 0.00 0.00 4.70
1091 1516 2.096442 TGATGCGCACGCTCTTCTG 61.096 57.895 14.90 0.00 42.51 3.02
1114 1539 1.139853 GATTCCCTTCCGCTGTGATCT 59.860 52.381 0.00 0.00 0.00 2.75
1146 1571 6.308766 GCTAACAAGTGCAGTCCAAAATATTG 59.691 38.462 0.00 0.00 36.25 1.90
1177 1602 5.237996 TGCTGTGATGCTCTCTTATTTATGC 59.762 40.000 0.00 0.00 0.00 3.14
1185 1610 4.150804 GCTCTCTTATTTATGCCAGTACGC 59.849 45.833 0.00 0.00 0.00 4.42
1207 1632 5.735892 CGCTCTTCAATGTTTACATGACATG 59.264 40.000 14.02 14.02 37.76 3.21
1214 1639 7.369607 TCAATGTTTACATGACATGTTTCCTG 58.630 34.615 25.34 14.89 41.63 3.86
1230 1655 7.654022 TGTTTCCTGTTTCCAAGAAACTATT 57.346 32.000 18.16 0.00 45.80 1.73
1273 1698 5.708948 TGGAGAAATTAAGATGGCAAAACG 58.291 37.500 0.00 0.00 0.00 3.60
1276 1701 5.709966 AGAAATTAAGATGGCAAAACGTCC 58.290 37.500 0.00 0.00 0.00 4.79
1279 1704 1.698506 AAGATGGCAAAACGTCCCAA 58.301 45.000 0.00 0.00 31.43 4.12
1308 1733 6.394345 AAAGAGAGAACCTGGTTATGGATT 57.606 37.500 12.08 2.47 0.00 3.01
1461 1888 2.551270 CTCACGAGCGGCAACAAC 59.449 61.111 1.45 0.00 0.00 3.32
1465 1892 2.972505 CGAGCGGCAACAACCACT 60.973 61.111 1.45 0.00 0.00 4.00
1493 1920 2.484264 GAGAAACATGGGAGTTTGACCG 59.516 50.000 0.00 0.00 41.48 4.79
1503 1930 1.798813 GAGTTTGACCGAAATGACGCT 59.201 47.619 0.00 0.00 0.00 5.07
1610 2037 3.211963 GGCCCGCATGCAGGTAAG 61.212 66.667 20.95 9.67 0.00 2.34
1662 2090 5.724370 TCTTGGTGGTATCTATCCAACTGAA 59.276 40.000 1.78 0.00 42.57 3.02
1738 2193 4.180817 GACCAACAACAGAAACCAAAAGG 58.819 43.478 0.00 0.00 0.00 3.11
1763 2218 5.633601 TGATGAAACTAGTGTCGACATCAAC 59.366 40.000 23.12 17.74 37.18 3.18
1826 2281 0.740868 TCTCAGCCATACAAGCGCAC 60.741 55.000 11.47 0.00 34.64 5.34
1926 2381 6.799926 AAACTTGATGTTTGTTTGTTTGCT 57.200 29.167 0.00 0.00 46.08 3.91
1934 2389 6.347270 TGTTTGTTTGTTTGCTTCATCATG 57.653 33.333 0.00 0.00 0.00 3.07
2015 2470 5.371115 TGCTAACTATTCACAACTTTGGC 57.629 39.130 0.00 0.00 0.00 4.52
2019 2474 3.472652 ACTATTCACAACTTTGGCGTGA 58.527 40.909 0.00 0.00 37.87 4.35
2020 2475 2.774439 ATTCACAACTTTGGCGTGAC 57.226 45.000 0.00 0.00 39.29 3.67
2021 2476 1.454201 TTCACAACTTTGGCGTGACA 58.546 45.000 0.00 0.00 39.29 3.58
2022 2477 1.674359 TCACAACTTTGGCGTGACAT 58.326 45.000 0.00 0.00 34.83 3.06
2023 2478 1.601903 TCACAACTTTGGCGTGACATC 59.398 47.619 0.00 0.00 34.83 3.06
2024 2479 0.586319 ACAACTTTGGCGTGACATCG 59.414 50.000 0.00 0.00 0.00 3.84
2047 2502 2.967599 TCGACATGGGAGACATTCTG 57.032 50.000 0.00 0.00 37.84 3.02
2275 2732 6.710744 ACTGTTTCTACGGATGTCTTCAAAAT 59.289 34.615 0.00 0.00 34.59 1.82
2276 2733 7.228706 ACTGTTTCTACGGATGTCTTCAAAATT 59.771 33.333 0.00 0.00 34.59 1.82
2404 2861 1.470494 TCAGCTCAGCTCTCAACTACG 59.530 52.381 0.00 0.00 36.40 3.51
2511 2968 4.400884 GGTGGTGCAACAATGATACCAATA 59.599 41.667 5.70 0.00 42.90 1.90
2529 2986 4.020307 CCAATATTGGGAAAAGTGTGGCTT 60.020 41.667 24.61 0.00 44.70 4.35
2758 3216 1.167851 TACGTCGATCGACCCAAAGT 58.832 50.000 35.48 28.68 41.76 2.66
2780 3242 2.611292 GCATCTGAACTGTATGCCTGAC 59.389 50.000 2.55 0.00 40.06 3.51
2801 3263 1.534729 CTGCAGGTACTTGGGGTTTC 58.465 55.000 5.57 0.00 34.60 2.78
2865 3327 2.365617 TCTGCCATCCTTCGTTCCTATC 59.634 50.000 0.00 0.00 0.00 2.08
2889 3351 1.272490 CCAGGTACGCAGAGTTCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
2894 3356 1.006102 CGCAGAGTTCTTCACCGGT 60.006 57.895 0.00 0.00 0.00 5.28
2919 3381 5.277634 GCGTTAAGTGTTCAACCATGTTACT 60.278 40.000 0.00 0.00 0.00 2.24
3219 3681 9.453325 TTTATAGTTTTTACCTTTTGTTCTGCG 57.547 29.630 0.00 0.00 0.00 5.18
3221 3683 5.578776 AGTTTTTACCTTTTGTTCTGCGAG 58.421 37.500 0.00 0.00 0.00 5.03
3237 3699 2.927477 TGCGAGTATTCCACGTGATTTC 59.073 45.455 19.30 4.90 0.00 2.17
3241 3703 4.566759 CGAGTATTCCACGTGATTTCACAT 59.433 41.667 19.30 0.54 46.75 3.21
3244 3706 6.611381 AGTATTCCACGTGATTTCACATTTG 58.389 36.000 19.30 4.70 46.75 2.32
3387 3934 1.293179 GCATGTTGGCCAGTTTCCC 59.707 57.895 5.11 0.00 0.00 3.97
3464 4011 9.102757 GATGATATTTCACGGTATATCTGCATT 57.897 33.333 9.58 0.00 35.64 3.56
3468 4015 2.368548 TCACGGTATATCTGCATTGGCT 59.631 45.455 0.00 0.00 41.91 4.75
3470 4017 2.634940 ACGGTATATCTGCATTGGCTCT 59.365 45.455 0.00 0.00 41.91 4.09
3615 4163 2.938756 GCTGTTGGTCTGAGAATCCCAG 60.939 54.545 0.00 0.00 0.00 4.45
3696 4244 0.451783 GGCATGAAAGTGCGGGTAAG 59.548 55.000 0.00 0.00 45.97 2.34
3703 4251 5.831702 TGAAAGTGCGGGTAAGTTTTAAA 57.168 34.783 0.00 0.00 0.00 1.52
3706 4254 7.266400 TGAAAGTGCGGGTAAGTTTTAAAAAT 58.734 30.769 1.31 0.00 0.00 1.82
3711 4259 7.650504 AGTGCGGGTAAGTTTTAAAAATTCTTC 59.349 33.333 16.19 8.92 0.00 2.87
3808 4380 5.781210 TGTTCATTCAAAAGGTATGTGCA 57.219 34.783 0.00 0.00 0.00 4.57
3814 4386 3.411446 TCAAAAGGTATGTGCAGGTCAG 58.589 45.455 0.00 0.00 0.00 3.51
3866 4438 2.900122 ATTAGCGTGTGATGTTGCAC 57.100 45.000 0.00 0.00 39.22 4.57
3886 4458 4.154918 GCACAGGAATTTGGAACTACTCTG 59.845 45.833 0.00 0.00 0.00 3.35
3898 4470 4.449405 GGAACTACTCTGAAGAAAGCACAC 59.551 45.833 0.00 0.00 0.00 3.82
3982 4554 8.164070 ACATTTATCTTGACTGAAACCCTAACT 58.836 33.333 0.00 0.00 0.00 2.24
3994 4566 8.801299 ACTGAAACCCTAACTCTACTAACTTAC 58.199 37.037 0.00 0.00 0.00 2.34
3995 4567 8.710749 TGAAACCCTAACTCTACTAACTTACA 57.289 34.615 0.00 0.00 0.00 2.41
3996 4568 9.146586 TGAAACCCTAACTCTACTAACTTACAA 57.853 33.333 0.00 0.00 0.00 2.41
4112 4684 1.973812 GGGCTGGCAGGTTTCAGAC 60.974 63.158 17.64 0.00 38.26 3.51
4137 4709 3.621953 GCAGAAGCTCTCAAGGTGT 57.378 52.632 0.00 0.00 37.91 4.16
4151 4723 8.844244 GCTCTCAAGGTGTGATATCAAATTAAT 58.156 33.333 7.07 0.00 35.07 1.40
4246 4818 5.910723 GCATTTCATTTTGTTTCAGCCTTTG 59.089 36.000 0.00 0.00 0.00 2.77
4262 4834 4.505313 CCTTTGAGGCTTTTGTAACTCC 57.495 45.455 0.00 0.00 0.00 3.85
4305 4880 2.734079 GCTCTCAAAGTTTCCGTCAGAG 59.266 50.000 0.00 0.00 0.00 3.35
4354 4929 1.814394 GCTTCCATGATGCAGTGAACA 59.186 47.619 0.00 0.00 33.71 3.18
4360 4935 7.309012 GCTTCCATGATGCAGTGAACATATTAT 60.309 37.037 0.00 0.00 33.71 1.28
4395 4970 4.976224 GTGGAACCACAACTTGTACTTT 57.024 40.909 17.69 0.00 45.53 2.66
4397 4972 6.056428 GTGGAACCACAACTTGTACTTTAG 57.944 41.667 17.69 0.00 45.53 1.85
4401 4976 7.227910 TGGAACCACAACTTGTACTTTAGATTC 59.772 37.037 0.00 0.00 0.00 2.52
4402 4977 7.444487 GGAACCACAACTTGTACTTTAGATTCT 59.556 37.037 0.00 0.00 0.00 2.40
4403 4978 9.485206 GAACCACAACTTGTACTTTAGATTCTA 57.515 33.333 0.00 0.00 0.00 2.10
4426 5001 9.710900 TCTATATTTTGGTCTATGCATACACAG 57.289 33.333 13.27 1.39 0.00 3.66
4427 5002 7.750229 ATATTTTGGTCTATGCATACACAGG 57.250 36.000 13.27 0.00 0.00 4.00
4428 5003 3.558931 TTGGTCTATGCATACACAGGG 57.441 47.619 13.27 0.00 0.00 4.45
4429 5004 1.768275 TGGTCTATGCATACACAGGGG 59.232 52.381 13.27 0.00 0.00 4.79
4430 5005 1.543429 GGTCTATGCATACACAGGGGC 60.543 57.143 13.27 0.04 0.00 5.80
4431 5006 1.140852 GTCTATGCATACACAGGGGCA 59.859 52.381 1.16 0.00 41.00 5.36
4433 5008 2.156917 CTATGCATACACAGGGGCATG 58.843 52.381 1.16 0.00 45.74 4.06
4434 5009 0.259647 ATGCATACACAGGGGCATGT 59.740 50.000 0.00 0.00 44.64 3.21
4435 5010 0.394216 TGCATACACAGGGGCATGTC 60.394 55.000 0.00 0.00 0.00 3.06
4436 5011 1.103398 GCATACACAGGGGCATGTCC 61.103 60.000 8.19 8.19 0.00 4.02
4437 5012 0.255604 CATACACAGGGGCATGTCCA 59.744 55.000 20.13 0.00 36.21 4.02
4440 5015 0.998928 ACACAGGGGCATGTCCATAA 59.001 50.000 20.13 0.00 36.21 1.90
4455 5030 7.610865 CATGTCCATAAAGTTGGGTAAATGTT 58.389 34.615 0.00 0.00 37.37 2.71
4467 5042 9.411189 AGTTGGGTAAATGTTAGTTTTCAGTTA 57.589 29.630 0.00 0.00 0.00 2.24
4468 5043 9.454585 GTTGGGTAAATGTTAGTTTTCAGTTAC 57.545 33.333 6.87 6.87 41.33 2.50
4469 5044 8.983702 TGGGTAAATGTTAGTTTTCAGTTACT 57.016 30.769 12.62 0.00 41.58 2.24
4471 5046 8.509690 GGGTAAATGTTAGTTTTCAGTTACTCC 58.490 37.037 12.62 9.60 41.58 3.85
4474 5049 7.981102 AATGTTAGTTTTCAGTTACTCCCTC 57.019 36.000 0.00 0.00 0.00 4.30
4475 5050 5.861727 TGTTAGTTTTCAGTTACTCCCTCC 58.138 41.667 0.00 0.00 0.00 4.30
4476 5051 3.679824 AGTTTTCAGTTACTCCCTCCG 57.320 47.619 0.00 0.00 0.00 4.63
4477 5052 2.970640 AGTTTTCAGTTACTCCCTCCGT 59.029 45.455 0.00 0.00 0.00 4.69
4478 5053 3.390311 AGTTTTCAGTTACTCCCTCCGTT 59.610 43.478 0.00 0.00 0.00 4.44
4479 5054 3.672767 TTTCAGTTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
4480 5055 1.171308 TCAGTTACTCCCTCCGTTCG 58.829 55.000 0.00 0.00 0.00 3.95
4481 5056 0.172803 CAGTTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
4482 5057 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
4483 5058 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
4484 5059 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
4485 5060 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4486 5061 0.535797 ACTCCCTCCGTTCGGAATTC 59.464 55.000 14.79 0.00 33.41 2.17
4487 5062 0.824759 CTCCCTCCGTTCGGAATTCT 59.175 55.000 14.79 0.00 33.41 2.40
4488 5063 1.207329 CTCCCTCCGTTCGGAATTCTT 59.793 52.381 14.79 0.00 33.41 2.52
4489 5064 1.206371 TCCCTCCGTTCGGAATTCTTC 59.794 52.381 14.79 0.00 33.41 2.87
4490 5065 1.207329 CCCTCCGTTCGGAATTCTTCT 59.793 52.381 14.79 0.00 33.41 2.85
4491 5066 2.429610 CCCTCCGTTCGGAATTCTTCTA 59.570 50.000 14.79 0.00 33.41 2.10
4492 5067 3.491104 CCCTCCGTTCGGAATTCTTCTAG 60.491 52.174 14.79 0.64 33.41 2.43
4493 5068 3.380637 CCTCCGTTCGGAATTCTTCTAGA 59.619 47.826 14.79 0.00 33.41 2.43
4494 5069 4.038162 CCTCCGTTCGGAATTCTTCTAGAT 59.962 45.833 14.79 0.00 33.41 1.98
4495 5070 5.241064 CCTCCGTTCGGAATTCTTCTAGATA 59.759 44.000 14.79 0.00 33.41 1.98
4496 5071 6.069684 TCCGTTCGGAATTCTTCTAGATAC 57.930 41.667 11.66 0.42 0.00 2.24
4497 5072 5.591472 TCCGTTCGGAATTCTTCTAGATACA 59.409 40.000 11.66 0.00 0.00 2.29
4498 5073 6.264744 TCCGTTCGGAATTCTTCTAGATACAT 59.735 38.462 11.66 0.00 0.00 2.29
4499 5074 6.583050 CCGTTCGGAATTCTTCTAGATACATC 59.417 42.308 5.19 0.00 0.00 3.06
4500 5075 6.583050 CGTTCGGAATTCTTCTAGATACATCC 59.417 42.308 5.23 0.00 0.00 3.51
4501 5076 7.434492 GTTCGGAATTCTTCTAGATACATCCA 58.566 38.462 5.23 0.00 0.00 3.41
4502 5077 7.782897 TCGGAATTCTTCTAGATACATCCAT 57.217 36.000 5.23 0.00 0.00 3.41
4503 5078 8.195165 TCGGAATTCTTCTAGATACATCCATT 57.805 34.615 5.23 0.00 0.00 3.16
4504 5079 8.651389 TCGGAATTCTTCTAGATACATCCATTT 58.349 33.333 5.23 0.00 0.00 2.32
4505 5080 8.930760 CGGAATTCTTCTAGATACATCCATTTC 58.069 37.037 5.23 0.00 0.00 2.17
4506 5081 9.225436 GGAATTCTTCTAGATACATCCATTTCC 57.775 37.037 5.23 0.00 0.00 3.13
4507 5082 9.784531 GAATTCTTCTAGATACATCCATTTCCA 57.215 33.333 0.00 0.00 0.00 3.53
4509 5084 9.790344 ATTCTTCTAGATACATCCATTTCCAAG 57.210 33.333 0.00 0.00 0.00 3.61
4510 5085 8.553085 TCTTCTAGATACATCCATTTCCAAGA 57.447 34.615 0.00 0.00 0.00 3.02
4511 5086 8.424918 TCTTCTAGATACATCCATTTCCAAGAC 58.575 37.037 0.00 0.00 0.00 3.01
4512 5087 7.675161 TCTAGATACATCCATTTCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
4513 5088 8.089625 TCTAGATACATCCATTTCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
4514 5089 8.206867 TCTAGATACATCCATTTCCAAGACAAG 58.793 37.037 0.00 0.00 0.00 3.16
4515 5090 6.725364 AGATACATCCATTTCCAAGACAAGT 58.275 36.000 0.00 0.00 0.00 3.16
4516 5091 7.861629 AGATACATCCATTTCCAAGACAAGTA 58.138 34.615 0.00 0.00 0.00 2.24
4517 5092 8.328758 AGATACATCCATTTCCAAGACAAGTAA 58.671 33.333 0.00 0.00 0.00 2.24
4518 5093 9.125026 GATACATCCATTTCCAAGACAAGTAAT 57.875 33.333 0.00 0.00 0.00 1.89
4519 5094 7.781324 ACATCCATTTCCAAGACAAGTAATT 57.219 32.000 0.00 0.00 0.00 1.40
4520 5095 7.830739 ACATCCATTTCCAAGACAAGTAATTC 58.169 34.615 0.00 0.00 0.00 2.17
4521 5096 6.834168 TCCATTTCCAAGACAAGTAATTCC 57.166 37.500 0.00 0.00 0.00 3.01
4522 5097 5.414454 TCCATTTCCAAGACAAGTAATTCCG 59.586 40.000 0.00 0.00 0.00 4.30
4523 5098 5.414454 CCATTTCCAAGACAAGTAATTCCGA 59.586 40.000 0.00 0.00 0.00 4.55
4524 5099 6.072175 CCATTTCCAAGACAAGTAATTCCGAA 60.072 38.462 0.00 0.00 0.00 4.30
4525 5100 5.934935 TTCCAAGACAAGTAATTCCGAAC 57.065 39.130 0.00 0.00 0.00 3.95
4526 5101 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
4527 5102 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
4528 5103 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
4529 5104 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4530 5105 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4531 5106 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4532 5107 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4533 5108 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4534 5109 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4535 5110 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4536 5111 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
4537 5112 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
4538 5113 0.549950 TCCGAACGGAGGGAGTAGAT 59.450 55.000 12.04 0.00 39.76 1.98
4539 5114 0.669077 CCGAACGGAGGGAGTAGATG 59.331 60.000 7.53 0.00 37.50 2.90
4540 5115 0.030908 CGAACGGAGGGAGTAGATGC 59.969 60.000 0.00 0.00 0.00 3.91
4541 5116 1.404843 GAACGGAGGGAGTAGATGCT 58.595 55.000 0.00 0.00 0.00 3.79
4542 5117 2.584236 GAACGGAGGGAGTAGATGCTA 58.416 52.381 0.00 0.00 0.00 3.49
4543 5118 2.279935 ACGGAGGGAGTAGATGCTAG 57.720 55.000 0.00 0.00 0.00 3.42
4544 5119 1.495574 ACGGAGGGAGTAGATGCTAGT 59.504 52.381 0.00 0.00 0.00 2.57
4545 5120 1.883275 CGGAGGGAGTAGATGCTAGTG 59.117 57.143 0.00 0.00 0.00 2.74
4546 5121 2.487445 CGGAGGGAGTAGATGCTAGTGA 60.487 54.545 0.00 0.00 0.00 3.41
4547 5122 3.567397 GGAGGGAGTAGATGCTAGTGAA 58.433 50.000 0.00 0.00 0.00 3.18
4559 5134 6.351711 AGATGCTAGTGAATAATTCAGCACA 58.648 36.000 0.00 0.00 39.93 4.57
4561 5136 6.426980 TGCTAGTGAATAATTCAGCACAAG 57.573 37.500 0.00 0.00 41.01 3.16
4562 5137 5.355071 TGCTAGTGAATAATTCAGCACAAGG 59.645 40.000 0.00 0.00 41.01 3.61
4563 5138 4.708726 AGTGAATAATTCAGCACAAGGC 57.291 40.909 0.00 0.00 41.01 4.35
4564 5139 3.445096 AGTGAATAATTCAGCACAAGGCC 59.555 43.478 0.00 0.00 46.50 5.19
4565 5140 2.423185 TGAATAATTCAGCACAAGGCCG 59.577 45.455 0.00 0.00 46.50 6.13
4566 5141 2.128771 ATAATTCAGCACAAGGCCGT 57.871 45.000 0.00 0.00 46.50 5.68
4568 5143 2.128771 AATTCAGCACAAGGCCGTAT 57.871 45.000 0.00 0.00 46.50 3.06
4569 5144 1.382522 ATTCAGCACAAGGCCGTATG 58.617 50.000 0.00 0.00 46.50 2.39
4570 5145 0.676466 TTCAGCACAAGGCCGTATGG 60.676 55.000 0.00 0.00 46.50 2.74
4596 5171 1.160137 ACGAAAGGCAGATTCAGTGC 58.840 50.000 0.00 0.00 40.42 4.40
4599 5174 2.012673 GAAAGGCAGATTCAGTGCGAT 58.987 47.619 0.00 0.00 42.19 4.58
4602 5177 0.935898 GGCAGATTCAGTGCGATCAG 59.064 55.000 8.45 2.96 42.19 2.90
4607 5182 2.495270 AGATTCAGTGCGATCAGTGTCT 59.505 45.455 8.45 0.00 42.75 3.41
4615 5190 4.884744 AGTGCGATCAGTGTCTACTCTTAT 59.115 41.667 0.00 0.00 34.07 1.73
4626 5201 6.983307 AGTGTCTACTCTTATGTGCATGATTC 59.017 38.462 0.00 0.00 28.79 2.52
4644 5219 8.512956 GCATGATTCTGATATGCAATCTTTACT 58.487 33.333 13.65 0.00 44.88 2.24
4647 5222 9.617523 TGATTCTGATATGCAATCTTTACTTGA 57.382 29.630 0.00 0.00 0.00 3.02
4650 5225 7.923888 TCTGATATGCAATCTTTACTTGAAGC 58.076 34.615 0.00 0.00 0.00 3.86
4651 5226 7.553760 TCTGATATGCAATCTTTACTTGAAGCA 59.446 33.333 0.00 0.00 34.68 3.91
4652 5227 8.054152 TGATATGCAATCTTTACTTGAAGCAA 57.946 30.769 0.00 0.00 34.18 3.91
4665 5380 2.564771 TGAAGCAAGTCTGTCAGGTTG 58.435 47.619 0.00 5.83 0.00 3.77
4763 5479 2.112898 CATGGATGGAGGCAAGTGC 58.887 57.895 0.00 0.00 41.14 4.40
4768 5484 1.375098 GATGGAGGCAAGTGCTCTGC 61.375 60.000 2.85 5.00 41.70 4.26
4787 5504 1.321474 CAAACACCTGCACTCCATGT 58.679 50.000 0.00 0.00 0.00 3.21
4789 5506 1.321474 AACACCTGCACTCCATGTTG 58.679 50.000 0.00 0.00 32.42 3.33
4838 5583 8.062065 TCAATTTAACATTGGGTAATGAGACC 57.938 34.615 6.98 0.00 45.21 3.85
4926 5672 7.497249 GTGGAGCATCAGTAAGAAATCTACAAT 59.503 37.037 0.00 0.00 36.25 2.71
4977 5723 8.590470 GTGACTCGATATTAAGATGCATACATG 58.410 37.037 0.00 0.00 36.35 3.21
5107 5853 4.798907 GCGACAGAATTCATCGAGAAGTTA 59.201 41.667 26.96 0.00 40.15 2.24
5135 5881 1.549170 AGGACGGTTCATGGTCAGTAC 59.451 52.381 0.00 0.00 34.87 2.73
5192 5938 6.569179 TTATTAAACAAGGAGAAGGTGTGC 57.431 37.500 0.00 0.00 0.00 4.57
5201 5947 2.498167 GAGAAGGTGTGCTGTTGACAT 58.502 47.619 0.00 0.00 0.00 3.06
5286 6183 3.368531 GGTTTGCTATAGAGGGCCTATCG 60.369 52.174 5.73 0.00 38.87 2.92
5413 6310 2.104451 TCCACAACCAAGGTAAACGCTA 59.896 45.455 0.00 0.00 0.00 4.26
5458 6355 8.585018 TGATGAACAGAAAGTACTCACATCTTA 58.415 33.333 0.00 0.00 34.62 2.10
5474 6371 9.322773 CTCACATCTTAGAGAAAATCAAGCATA 57.677 33.333 0.00 0.00 33.74 3.14
5476 6373 8.341173 CACATCTTAGAGAAAATCAAGCATACC 58.659 37.037 0.00 0.00 0.00 2.73
5487 6384 6.515272 AATCAAGCATACCGACAAAGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
5489 6386 6.325919 TCAAGCATACCGACAAAGAAATTT 57.674 33.333 0.00 0.00 0.00 1.82
5492 6389 8.353684 TCAAGCATACCGACAAAGAAATTTTTA 58.646 29.630 0.00 0.00 0.00 1.52
5493 6390 8.973378 CAAGCATACCGACAAAGAAATTTTTAA 58.027 29.630 0.00 0.00 0.00 1.52
5541 6538 3.308438 TCTGCACTTTCTACGGTAACC 57.692 47.619 0.00 0.00 0.00 2.85
5560 6557 2.031944 ACCGATCATACGTGTCATCTCG 60.032 50.000 0.00 0.00 36.75 4.04
5563 6560 4.467735 CGATCATACGTGTCATCTCGAAT 58.532 43.478 0.00 0.00 35.08 3.34
5581 6578 4.565166 TCGAATTCTAAACAGGCATACACG 59.435 41.667 3.52 0.00 0.00 4.49
5606 6603 2.698855 AGACGGGGAGAAATCACATG 57.301 50.000 0.00 0.00 0.00 3.21
5698 6695 4.099266 TCCAAAGGTTTCACATGGTCAAAG 59.901 41.667 0.00 0.00 32.90 2.77
5733 6730 9.355215 ACTACTATTATGTTAATGCGCAGTATC 57.645 33.333 19.24 17.82 28.26 2.24
5744 6741 1.653679 GCGCAGTATCGTAAATGCACG 60.654 52.381 0.30 0.00 43.28 5.34
5763 6760 4.076394 CACGAAAGGTTTCCCCAGAATAA 58.924 43.478 0.00 0.00 33.68 1.40
5764 6761 4.077108 ACGAAAGGTTTCCCCAGAATAAC 58.923 43.478 0.00 0.00 33.68 1.89
5839 6836 4.724399 TCAAGGTGCAGGTTCTAATTCAA 58.276 39.130 0.00 0.00 0.00 2.69
5885 6882 6.817765 ATTAATTCCAGCTTTTCTTCGACA 57.182 33.333 0.00 0.00 0.00 4.35
5896 6893 0.108804 TCTTCGACATCAGGCCGAAC 60.109 55.000 0.00 0.00 37.39 3.95
5946 6943 4.201980 GCAAGACTTATCATGAGCATGCAA 60.202 41.667 21.98 8.14 38.65 4.08
6006 7066 3.303132 GCTACAGTTAATGTACCATGCGC 60.303 47.826 0.00 0.00 43.66 6.09
6196 7256 3.259625 GGCCCTTGGAGAGTATCATAGAC 59.740 52.174 0.00 0.00 37.82 2.59
6223 7283 5.886960 ACTTTGCTCTGGCTAAATTAGTG 57.113 39.130 1.68 0.00 39.59 2.74
6245 7305 3.873952 GCCTTCTGGTATGAAGCAACTAG 59.126 47.826 0.00 0.00 41.36 2.57
6267 7330 2.818714 CGCTCCTCTGCTGGCAAG 60.819 66.667 0.00 0.00 0.00 4.01
7392 8514 3.884037 AATGGAGGACACAAGAAACCT 57.116 42.857 0.00 0.00 35.29 3.50
7451 8574 6.358974 TCACTGAAATGACATCCAGACTTA 57.641 37.500 18.93 4.55 0.00 2.24
7468 8623 4.039730 AGACTTAAGAGAGCAGCAACTTGA 59.960 41.667 10.09 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.209410 CAACAAGCAGAAGACTGAAGGT 58.791 45.455 0.00 0.00 46.03 3.50
1 2 3.003068 CACAACAAGCAGAAGACTGAAGG 59.997 47.826 0.00 0.00 46.03 3.46
2 3 3.624861 ACACAACAAGCAGAAGACTGAAG 59.375 43.478 0.00 0.00 46.03 3.02
3 4 3.609853 ACACAACAAGCAGAAGACTGAA 58.390 40.909 0.00 0.00 46.03 3.02
4 5 3.266510 ACACAACAAGCAGAAGACTGA 57.733 42.857 0.00 0.00 46.03 3.41
5 6 3.127548 ACAACACAACAAGCAGAAGACTG 59.872 43.478 0.00 0.00 45.91 3.51
6 7 3.347216 ACAACACAACAAGCAGAAGACT 58.653 40.909 0.00 0.00 0.00 3.24
7 8 3.764885 ACAACACAACAAGCAGAAGAC 57.235 42.857 0.00 0.00 0.00 3.01
8 9 4.332543 CAGTACAACACAACAAGCAGAAGA 59.667 41.667 0.00 0.00 0.00 2.87
9 10 4.332543 TCAGTACAACACAACAAGCAGAAG 59.667 41.667 0.00 0.00 0.00 2.85
10 11 4.257731 TCAGTACAACACAACAAGCAGAA 58.742 39.130 0.00 0.00 0.00 3.02
11 12 3.867857 TCAGTACAACACAACAAGCAGA 58.132 40.909 0.00 0.00 0.00 4.26
12 13 4.614555 TTCAGTACAACACAACAAGCAG 57.385 40.909 0.00 0.00 0.00 4.24
13 14 5.124617 TGATTTCAGTACAACACAACAAGCA 59.875 36.000 0.00 0.00 0.00 3.91
14 15 5.577835 TGATTTCAGTACAACACAACAAGC 58.422 37.500 0.00 0.00 0.00 4.01
30 31 9.936759 TGTATACTGTCAACATAACTGATTTCA 57.063 29.630 4.17 0.00 0.00 2.69
33 34 9.890629 ACATGTATACTGTCAACATAACTGATT 57.109 29.630 0.00 0.00 32.70 2.57
41 42 8.486210 AGGAACATACATGTATACTGTCAACAT 58.514 33.333 17.86 5.08 40.80 2.71
64 68 8.823220 TGAATCGATATGGATTACAGATAGGA 57.177 34.615 12.36 0.00 36.79 2.94
72 76 8.763049 TTCAGTGATGAATCGATATGGATTAC 57.237 34.615 12.36 7.70 36.79 1.89
83 87 3.003068 GGCCAGAATTCAGTGATGAATCG 59.997 47.826 8.44 0.00 37.52 3.34
124 128 7.946655 TCTGAAGCATTCCGTATAACTAATG 57.053 36.000 0.00 0.00 46.93 1.90
128 132 6.823689 ACAATTCTGAAGCATTCCGTATAACT 59.176 34.615 0.00 0.00 46.93 2.24
130 134 6.597672 ACACAATTCTGAAGCATTCCGTATAA 59.402 34.615 0.00 0.00 46.93 0.98
132 136 4.943705 ACACAATTCTGAAGCATTCCGTAT 59.056 37.500 0.00 0.00 46.93 3.06
136 140 3.507233 TCCACACAATTCTGAAGCATTCC 59.493 43.478 0.00 0.00 46.93 3.01
139 143 7.255381 GCTTATATCCACACAATTCTGAAGCAT 60.255 37.037 0.00 0.00 35.60 3.79
157 162 6.088616 GCCGAATTTGATTTGCTGCTTATATC 59.911 38.462 0.00 0.00 0.00 1.63
167 172 2.891112 TGGATGCCGAATTTGATTTGC 58.109 42.857 0.00 0.00 0.00 3.68
168 173 4.497300 AGTTGGATGCCGAATTTGATTTG 58.503 39.130 0.00 0.00 0.00 2.32
169 174 4.806640 AGTTGGATGCCGAATTTGATTT 57.193 36.364 0.00 0.00 0.00 2.17
170 175 4.463891 AGAAGTTGGATGCCGAATTTGATT 59.536 37.500 0.00 0.00 0.00 2.57
171 176 4.019174 AGAAGTTGGATGCCGAATTTGAT 58.981 39.130 0.00 0.00 0.00 2.57
172 177 3.420893 AGAAGTTGGATGCCGAATTTGA 58.579 40.909 0.00 0.00 0.00 2.69
173 178 3.428045 GGAGAAGTTGGATGCCGAATTTG 60.428 47.826 0.00 0.00 0.00 2.32
174 179 2.755103 GGAGAAGTTGGATGCCGAATTT 59.245 45.455 0.00 0.00 0.00 1.82
176 181 1.561542 AGGAGAAGTTGGATGCCGAAT 59.438 47.619 0.00 0.00 0.00 3.34
177 182 0.984230 AGGAGAAGTTGGATGCCGAA 59.016 50.000 0.00 0.00 0.00 4.30
178 183 0.984230 AAGGAGAAGTTGGATGCCGA 59.016 50.000 0.00 0.00 0.00 5.54
179 184 1.089920 CAAGGAGAAGTTGGATGCCG 58.910 55.000 0.00 0.00 0.00 5.69
180 185 2.496899 TCAAGGAGAAGTTGGATGCC 57.503 50.000 0.00 0.00 0.00 4.40
194 199 3.988976 TCTCCAGTTCATCCTTCAAGG 57.011 47.619 0.00 0.00 36.46 3.61
198 203 3.272574 TGCATCTCCAGTTCATCCTTC 57.727 47.619 0.00 0.00 0.00 3.46
200 205 3.947612 AATGCATCTCCAGTTCATCCT 57.052 42.857 0.00 0.00 0.00 3.24
227 232 2.104792 TCACAGCCTTAGCAACAAGTCT 59.895 45.455 0.00 0.00 43.56 3.24
228 233 2.481952 CTCACAGCCTTAGCAACAAGTC 59.518 50.000 0.00 0.00 43.56 3.01
231 236 2.638480 ACTCACAGCCTTAGCAACAA 57.362 45.000 0.00 0.00 43.56 2.83
235 240 2.493675 CACTCTACTCACAGCCTTAGCA 59.506 50.000 0.00 0.00 43.56 3.49
252 257 5.215160 GTTCCATGAAACAATCACACACTC 58.785 41.667 0.00 0.00 41.93 3.51
254 259 4.930963 TGTTCCATGAAACAATCACACAC 58.069 39.130 0.00 0.00 41.93 3.82
255 260 4.499526 GCTGTTCCATGAAACAATCACACA 60.500 41.667 0.00 0.00 41.93 3.72
256 261 3.983344 GCTGTTCCATGAAACAATCACAC 59.017 43.478 0.00 0.00 41.93 3.82
290 298 4.880120 ACCTCATATGCACAATCTTCAGTG 59.120 41.667 0.00 0.00 38.74 3.66
317 325 3.369388 ACCCTCCCTCCCTCCCTC 61.369 72.222 0.00 0.00 0.00 4.30
344 356 1.288127 GCAGAGCAAGTTGCCAAGG 59.712 57.895 24.02 12.37 46.52 3.61
369 381 6.043411 AGACTAAAACATCGGTTGATCTAGC 58.957 40.000 0.00 0.00 37.30 3.42
377 398 6.698380 ACATACAGAGACTAAAACATCGGTT 58.302 36.000 0.00 0.00 39.43 4.44
416 437 5.095490 GGAATTCAAAGAAGGCAATACGTG 58.905 41.667 7.93 0.00 0.00 4.49
493 514 9.472361 GCTTTAACAATTGATCATGATAGCATT 57.528 29.630 13.59 4.57 30.68 3.56
536 561 3.766151 CAGCTAAACATGCATTCACCAG 58.234 45.455 0.00 0.00 0.00 4.00
548 573 3.287222 AGACCAACAAAGCAGCTAAACA 58.713 40.909 0.00 0.00 0.00 2.83
593 618 5.541845 TGTAGCAATATCAGCATCAGTACC 58.458 41.667 3.33 0.00 0.00 3.34
617 642 5.806286 TGTTCTTTCTCAATGTGAACGAAC 58.194 37.500 26.32 26.32 45.07 3.95
679 1088 8.052141 TGATGATATATTTGGCCGATTTCCATA 58.948 33.333 0.00 0.00 32.92 2.74
681 1090 6.244654 TGATGATATATTTGGCCGATTTCCA 58.755 36.000 0.00 0.00 0.00 3.53
682 1091 6.599244 TCTGATGATATATTTGGCCGATTTCC 59.401 38.462 0.00 0.00 0.00 3.13
705 1114 1.993370 GAACTAATCGTGTGCGCTTCT 59.007 47.619 9.73 0.00 38.14 2.85
725 1134 2.386661 ATTTCGTAGGTGCACTCTGG 57.613 50.000 17.98 8.88 0.00 3.86
885 1295 3.434319 GCGTGCTGGGTGTGGATG 61.434 66.667 0.00 0.00 0.00 3.51
887 1297 3.705934 TTTGCGTGCTGGGTGTGGA 62.706 57.895 0.00 0.00 0.00 4.02
889 1299 1.299316 CTTTTGCGTGCTGGGTGTG 60.299 57.895 0.00 0.00 0.00 3.82
891 1301 1.733402 TTCCTTTTGCGTGCTGGGTG 61.733 55.000 0.00 0.00 0.00 4.61
892 1302 1.454847 TTCCTTTTGCGTGCTGGGT 60.455 52.632 0.00 0.00 0.00 4.51
893 1303 1.286880 CTTCCTTTTGCGTGCTGGG 59.713 57.895 0.00 0.00 0.00 4.45
913 1334 2.251409 ATCACATGGAAGCGATGAGG 57.749 50.000 0.00 0.00 0.00 3.86
972 1393 2.228059 GATGATGCATGAAGAGTGGGG 58.772 52.381 2.46 0.00 0.00 4.96
1091 1516 1.084370 CACAGCGGAAGGGAATCGAC 61.084 60.000 0.00 0.00 0.00 4.20
1114 1539 0.465278 TGCACTTGTTAGCAGGCACA 60.465 50.000 0.00 0.00 35.51 4.57
1134 1559 6.582295 CACAGCACTTACACAATATTTTGGAC 59.418 38.462 6.56 0.00 37.15 4.02
1136 1561 6.676950 TCACAGCACTTACACAATATTTTGG 58.323 36.000 6.56 0.00 37.15 3.28
1138 1563 6.808212 GCATCACAGCACTTACACAATATTTT 59.192 34.615 0.00 0.00 0.00 1.82
1146 1571 2.670414 GAGAGCATCACAGCACTTACAC 59.330 50.000 0.00 0.00 35.56 2.90
1177 1602 4.688879 TGTAAACATTGAAGAGCGTACTGG 59.311 41.667 0.00 0.00 0.00 4.00
1185 1610 9.121517 GAAACATGTCATGTAAACATTGAAGAG 57.878 33.333 18.70 0.00 44.07 2.85
1230 1655 3.382227 CCATGCATGCAGGAGTTTGATAA 59.618 43.478 32.39 0.36 0.00 1.75
1263 1688 0.673437 CTGTTGGGACGTTTTGCCAT 59.327 50.000 0.00 0.00 46.91 4.40
1273 1698 4.755629 GGTTCTCTCTTTTACTGTTGGGAC 59.244 45.833 0.00 0.00 0.00 4.46
1276 1701 4.757149 CCAGGTTCTCTCTTTTACTGTTGG 59.243 45.833 0.00 0.00 0.00 3.77
1279 1704 5.632034 AACCAGGTTCTCTCTTTTACTGT 57.368 39.130 0.00 0.00 0.00 3.55
1308 1733 6.187682 AGAGGTCAGAAACTTTGGAAAGAAA 58.812 36.000 6.13 0.00 39.31 2.52
1364 1789 7.944729 AACACAATATTCTTCTGCCACTATT 57.055 32.000 0.00 0.00 0.00 1.73
1461 1888 2.744202 CCATGTTTCTCTTCCGAAGTGG 59.256 50.000 8.01 3.10 40.09 4.00
1465 1892 2.637872 ACTCCCATGTTTCTCTTCCGAA 59.362 45.455 0.00 0.00 0.00 4.30
1493 1920 2.465210 GCTTGATCCAGCGTCATTTC 57.535 50.000 2.61 0.00 0.00 2.17
1503 1930 1.153568 CCGCTCTTCGCTTGATCCA 60.154 57.895 0.00 0.00 36.73 3.41
1545 1972 5.047566 TGAACCTGTTCTTCTGGAATTCA 57.952 39.130 7.93 0.00 40.14 2.57
1610 2037 8.848474 AGGGTGTATATATCAGTGCATTTTAC 57.152 34.615 0.00 0.00 0.00 2.01
1689 2144 6.216868 AGGCTGAAGTTATTCCCCTTTACTAA 59.783 38.462 0.00 0.00 34.32 2.24
1693 2148 5.014755 TCAAGGCTGAAGTTATTCCCCTTTA 59.985 40.000 0.00 0.14 40.97 1.85
1738 2193 5.161358 TGATGTCGACACTAGTTTCATCAC 58.839 41.667 22.71 3.48 36.03 3.06
1763 2218 1.002684 GTCTCCGACACCGTAGCTATG 60.003 57.143 5.93 5.93 32.09 2.23
1789 2244 3.840666 TGAGAAGTATCTGAGTGCCCTTT 59.159 43.478 0.00 0.00 35.54 3.11
1856 2311 2.427506 GTTGCTGTGGTAAAGAGAGGG 58.572 52.381 0.00 0.00 0.00 4.30
1906 2361 6.406093 TGAAGCAAACAAACAAACATCAAG 57.594 33.333 0.00 0.00 0.00 3.02
1926 2381 9.112725 CATAACTAACTTGATGGTCATGATGAA 57.887 33.333 0.00 0.00 0.00 2.57
2020 2475 7.961827 AATGTCTCCCATGTCGATGTCGATG 62.962 48.000 8.48 3.93 41.04 3.84
2021 2476 6.009010 AATGTCTCCCATGTCGATGTCGAT 62.009 45.833 8.48 0.00 41.04 3.59
2022 2477 3.271039 ATGTCTCCCATGTCGATGTCGA 61.271 50.000 0.21 0.21 38.05 4.20
2023 2478 0.455815 TGTCTCCCATGTCGATGTCG 59.544 55.000 0.00 0.00 41.45 4.35
2024 2479 2.898729 ATGTCTCCCATGTCGATGTC 57.101 50.000 0.00 0.00 30.69 3.06
2047 2502 3.676646 GCAAGCAGGAATGAACAAACATC 59.323 43.478 0.00 0.00 0.00 3.06
2078 2533 4.322804 CGACTCCGTGACATACAAAACTAC 59.677 45.833 0.00 0.00 0.00 2.73
2196 2652 8.739972 CAGAACTTGCTAAAAGTTACCCATAAT 58.260 33.333 3.59 0.00 40.27 1.28
2404 2861 3.193691 TCACCAAGTAGTCTTAGAGCAGC 59.806 47.826 0.00 0.00 32.07 5.25
2529 2986 4.019681 ACAAGGAGGATGATTGTTACCGAA 60.020 41.667 0.00 0.00 33.49 4.30
2741 3199 1.683790 GCACTTTGGGTCGATCGACG 61.684 60.000 34.69 24.93 45.41 5.12
2758 3216 2.236893 TCAGGCATACAGTTCAGATGCA 59.763 45.455 8.05 0.00 46.29 3.96
2780 3242 2.436646 CCCCAAGTACCTGCAGCG 60.437 66.667 8.66 4.27 0.00 5.18
2865 3327 0.034896 AACTCTGCGTACCTGGTTGG 59.965 55.000 3.84 0.00 42.93 3.77
2889 3351 0.179078 TGAACACTTAACGCACCGGT 60.179 50.000 0.00 0.00 0.00 5.28
2894 3356 2.946329 ACATGGTTGAACACTTAACGCA 59.054 40.909 0.00 0.00 0.00 5.24
2932 3394 7.280205 GGTTCATACCTAGTGTTGAATAACCAG 59.720 40.741 0.00 0.00 41.53 4.00
2994 3456 3.057315 CCGTCCTGCATTTGAGAAACAAT 60.057 43.478 0.00 0.00 38.36 2.71
3112 3574 2.225467 GGGTGAATATGCAGCTCTTCC 58.775 52.381 12.62 0.00 36.56 3.46
3209 3671 2.734606 CGTGGAATACTCGCAGAACAAA 59.265 45.455 0.00 0.00 34.09 2.83
3216 3678 2.665649 AATCACGTGGAATACTCGCA 57.334 45.000 17.00 0.00 0.00 5.10
3299 3846 3.307059 GGAGCCAGGTATGTGGATGATAC 60.307 52.174 0.00 0.00 40.44 2.24
3387 3934 3.301906 CGTAGAGCTTTTCGTCTCATGTG 59.698 47.826 0.00 0.00 0.00 3.21
3468 4015 2.543777 AGTCTAACCTTTTGCGCAGA 57.456 45.000 11.31 2.14 0.00 4.26
3470 4017 2.477375 CGTAAGTCTAACCTTTTGCGCA 59.523 45.455 5.66 5.66 0.00 6.09
3615 4163 1.542544 GCGCTTGAATGCATCTGAAC 58.457 50.000 0.00 0.00 0.00 3.18
3650 4198 2.103094 CACCGAGCCATAGGAAATCAGA 59.897 50.000 0.00 0.00 0.00 3.27
3744 4298 7.750014 AGTTTGTGCACAAATTTCAATTTTGAC 59.250 29.630 39.08 25.20 46.12 3.18
3745 4299 7.749570 CAGTTTGTGCACAAATTTCAATTTTGA 59.250 29.630 39.08 16.47 46.12 2.69
3746 4300 7.749570 TCAGTTTGTGCACAAATTTCAATTTTG 59.250 29.630 39.08 25.22 46.12 2.44
3747 4301 7.814642 TCAGTTTGTGCACAAATTTCAATTTT 58.185 26.923 39.08 18.03 46.12 1.82
3808 4380 1.340405 GCAACATCCCATGACTGACCT 60.340 52.381 0.00 0.00 0.00 3.85
3814 4386 2.028748 AGCAAAAGCAACATCCCATGAC 60.029 45.455 0.00 0.00 0.00 3.06
3835 4407 5.172205 TCACACGCTAATATTGCTTGTACA 58.828 37.500 16.02 0.00 40.17 2.90
3844 4416 4.394610 TGTGCAACATCACACGCTAATATT 59.605 37.500 0.00 0.00 45.67 1.28
3866 4438 6.467677 TCTTCAGAGTAGTTCCAAATTCCTG 58.532 40.000 0.00 0.00 0.00 3.86
3886 4458 7.359514 GCTTTTATGAAATGGTGTGCTTTCTTC 60.360 37.037 0.00 0.00 33.50 2.87
3898 4470 4.406649 ACCTGGGATGCTTTTATGAAATGG 59.593 41.667 0.00 0.00 0.00 3.16
3933 4505 9.701098 ATGTACGTAACAAAATTCAGTTCTAGA 57.299 29.630 0.00 0.00 42.70 2.43
3954 4526 7.923414 AGGGTTTCAGTCAAGATAAATGTAC 57.077 36.000 0.00 0.00 0.00 2.90
3957 4529 8.567285 AGTTAGGGTTTCAGTCAAGATAAATG 57.433 34.615 0.00 0.00 0.00 2.32
4016 4588 0.537188 AGTCACCGGTAGGATTGCTG 59.463 55.000 6.87 0.00 41.02 4.41
4017 4589 1.207329 GAAGTCACCGGTAGGATTGCT 59.793 52.381 6.87 0.00 41.02 3.91
4018 4590 1.066430 TGAAGTCACCGGTAGGATTGC 60.066 52.381 6.87 0.00 41.02 3.56
4026 4598 0.468226 TTTCTGCTGAAGTCACCGGT 59.532 50.000 0.00 0.00 33.28 5.28
4028 4600 1.871080 ACTTTCTGCTGAAGTCACCG 58.129 50.000 6.13 0.00 33.28 4.94
4151 4723 7.068103 TCTGTTCACTTTCTTTTGCATCCTTAA 59.932 33.333 0.00 0.00 0.00 1.85
4155 4727 5.186996 TCTGTTCACTTTCTTTTGCATCC 57.813 39.130 0.00 0.00 0.00 3.51
4246 4818 4.009370 ACAGAGGAGTTACAAAAGCCTC 57.991 45.455 0.00 0.00 44.24 4.70
4259 4831 1.622811 ACAGAGCCTGAAACAGAGGAG 59.377 52.381 8.91 0.00 35.18 3.69
4262 4834 3.993081 CAGTAACAGAGCCTGAAACAGAG 59.007 47.826 8.91 0.00 35.18 3.35
4305 4880 1.688735 TCCATCTGATCACCCACGATC 59.311 52.381 0.00 0.00 41.88 3.69
4377 4952 8.379457 AGAATCTAAAGTACAAGTTGTGGTTC 57.621 34.615 18.90 11.83 0.00 3.62
4401 4976 8.939929 CCTGTGTATGCATAGACCAAAATATAG 58.060 37.037 26.14 15.83 36.13 1.31
4402 4977 7.882791 CCCTGTGTATGCATAGACCAAAATATA 59.117 37.037 26.14 8.44 36.13 0.86
4403 4978 6.716628 CCCTGTGTATGCATAGACCAAAATAT 59.283 38.462 26.14 0.00 36.13 1.28
4404 4979 6.061441 CCCTGTGTATGCATAGACCAAAATA 58.939 40.000 26.14 9.69 36.13 1.40
4406 4981 4.269183 CCCTGTGTATGCATAGACCAAAA 58.731 43.478 26.14 10.64 36.13 2.44
4408 4983 2.172505 CCCCTGTGTATGCATAGACCAA 59.827 50.000 26.14 11.58 36.13 3.67
4410 4985 1.543429 GCCCCTGTGTATGCATAGACC 60.543 57.143 26.14 10.56 36.13 3.85
4412 4987 1.506025 TGCCCCTGTGTATGCATAGA 58.494 50.000 6.67 2.30 36.13 1.98
4414 4989 1.494296 ACATGCCCCTGTGTATGCATA 59.506 47.619 1.16 1.16 42.22 3.14
4415 4990 0.259647 ACATGCCCCTGTGTATGCAT 59.740 50.000 3.79 3.79 44.79 3.96
4416 4991 0.394216 GACATGCCCCTGTGTATGCA 60.394 55.000 0.00 0.00 38.23 3.96
4418 4993 0.255604 TGGACATGCCCCTGTGTATG 59.744 55.000 0.00 0.00 34.87 2.39
4419 4994 1.225373 ATGGACATGCCCCTGTGTAT 58.775 50.000 0.00 0.00 34.97 2.29
4420 4995 1.886422 TATGGACATGCCCCTGTGTA 58.114 50.000 0.00 0.00 34.97 2.90
4421 4996 0.998928 TTATGGACATGCCCCTGTGT 59.001 50.000 0.00 0.00 34.97 3.72
4422 4997 2.026641 CTTTATGGACATGCCCCTGTG 58.973 52.381 0.00 0.00 34.97 3.66
4423 4998 1.640670 ACTTTATGGACATGCCCCTGT 59.359 47.619 0.00 0.00 34.97 4.00
4424 4999 2.428171 CAACTTTATGGACATGCCCCTG 59.572 50.000 0.00 0.00 34.97 4.45
4425 5000 2.624029 CCAACTTTATGGACATGCCCCT 60.624 50.000 0.00 0.00 43.54 4.79
4426 5001 1.756538 CCAACTTTATGGACATGCCCC 59.243 52.381 0.00 0.00 43.54 5.80
4427 5002 1.756538 CCCAACTTTATGGACATGCCC 59.243 52.381 0.00 0.00 43.54 5.36
4428 5003 2.456577 ACCCAACTTTATGGACATGCC 58.543 47.619 0.00 0.00 43.54 4.40
4429 5004 5.652994 TTTACCCAACTTTATGGACATGC 57.347 39.130 0.00 0.00 43.54 4.06
4430 5005 7.169158 ACATTTACCCAACTTTATGGACATG 57.831 36.000 0.00 0.00 43.54 3.21
4431 5006 7.790782 AACATTTACCCAACTTTATGGACAT 57.209 32.000 0.00 0.00 43.54 3.06
4432 5007 7.945664 ACTAACATTTACCCAACTTTATGGACA 59.054 33.333 0.00 0.00 43.54 4.02
4433 5008 8.344446 ACTAACATTTACCCAACTTTATGGAC 57.656 34.615 0.00 0.00 43.54 4.02
4434 5009 8.943594 AACTAACATTTACCCAACTTTATGGA 57.056 30.769 0.00 0.00 43.54 3.41
4435 5010 9.990360 AAAACTAACATTTACCCAACTTTATGG 57.010 29.630 0.00 0.00 40.35 2.74
4440 5015 8.301252 ACTGAAAACTAACATTTACCCAACTT 57.699 30.769 0.00 0.00 0.00 2.66
4455 5030 4.154942 ACGGAGGGAGTAACTGAAAACTA 58.845 43.478 0.00 0.00 0.00 2.24
4467 5042 0.535797 GAATTCCGAACGGAGGGAGT 59.464 55.000 15.34 1.27 46.06 3.85
4468 5043 0.824759 AGAATTCCGAACGGAGGGAG 59.175 55.000 15.34 0.00 46.06 4.30
4469 5044 1.206371 GAAGAATTCCGAACGGAGGGA 59.794 52.381 15.34 2.49 46.06 4.20
4483 5058 9.790344 CTTGGAAATGGATGTATCTAGAAGAAT 57.210 33.333 0.00 0.00 0.00 2.40
4484 5059 8.992349 TCTTGGAAATGGATGTATCTAGAAGAA 58.008 33.333 0.00 0.00 0.00 2.52
4485 5060 8.424918 GTCTTGGAAATGGATGTATCTAGAAGA 58.575 37.037 0.00 0.00 0.00 2.87
4486 5061 8.206867 TGTCTTGGAAATGGATGTATCTAGAAG 58.793 37.037 0.00 0.00 0.00 2.85
4487 5062 8.089625 TGTCTTGGAAATGGATGTATCTAGAA 57.910 34.615 0.00 0.00 0.00 2.10
4488 5063 7.675161 TGTCTTGGAAATGGATGTATCTAGA 57.325 36.000 0.00 0.00 0.00 2.43
4489 5064 7.989741 ACTTGTCTTGGAAATGGATGTATCTAG 59.010 37.037 0.00 0.00 0.00 2.43
4490 5065 7.861629 ACTTGTCTTGGAAATGGATGTATCTA 58.138 34.615 0.00 0.00 0.00 1.98
4491 5066 6.725364 ACTTGTCTTGGAAATGGATGTATCT 58.275 36.000 0.00 0.00 0.00 1.98
4492 5067 8.506168 TTACTTGTCTTGGAAATGGATGTATC 57.494 34.615 0.00 0.00 0.00 2.24
4493 5068 9.479549 AATTACTTGTCTTGGAAATGGATGTAT 57.520 29.630 0.00 0.00 0.00 2.29
4494 5069 8.877864 AATTACTTGTCTTGGAAATGGATGTA 57.122 30.769 0.00 0.00 0.00 2.29
4495 5070 7.093771 GGAATTACTTGTCTTGGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
4496 5071 7.260603 GGAATTACTTGTCTTGGAAATGGATG 58.739 38.462 0.00 0.00 0.00 3.51
4497 5072 6.095440 CGGAATTACTTGTCTTGGAAATGGAT 59.905 38.462 0.00 0.00 0.00 3.41
4498 5073 5.414454 CGGAATTACTTGTCTTGGAAATGGA 59.586 40.000 0.00 0.00 0.00 3.41
4499 5074 5.414454 TCGGAATTACTTGTCTTGGAAATGG 59.586 40.000 0.00 0.00 0.00 3.16
4500 5075 6.494893 TCGGAATTACTTGTCTTGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
4501 5076 6.348213 CGTTCGGAATTACTTGTCTTGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
4502 5077 5.049954 CGTTCGGAATTACTTGTCTTGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
4503 5078 4.449743 CGTTCGGAATTACTTGTCTTGGAA 59.550 41.667 0.00 0.00 0.00 3.53
4504 5079 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
4505 5080 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
4506 5081 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
4507 5082 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
4508 5083 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4509 5084 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4510 5085 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4511 5086 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4512 5087 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4513 5088 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4514 5089 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4515 5090 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4516 5091 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4517 5092 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
4518 5093 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
4519 5094 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
4520 5095 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
4521 5096 0.030908 GCATCTACTCCCTCCGTTCG 59.969 60.000 0.00 0.00 0.00 3.95
4522 5097 1.404843 AGCATCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
4523 5098 2.091775 ACTAGCATCTACTCCCTCCGTT 60.092 50.000 0.00 0.00 0.00 4.44
4524 5099 1.495574 ACTAGCATCTACTCCCTCCGT 59.504 52.381 0.00 0.00 0.00 4.69
4525 5100 1.883275 CACTAGCATCTACTCCCTCCG 59.117 57.143 0.00 0.00 0.00 4.63
4526 5101 3.231207 TCACTAGCATCTACTCCCTCC 57.769 52.381 0.00 0.00 0.00 4.30
4527 5102 6.902771 TTATTCACTAGCATCTACTCCCTC 57.097 41.667 0.00 0.00 0.00 4.30
4528 5103 7.510685 TGAATTATTCACTAGCATCTACTCCCT 59.489 37.037 3.20 0.00 34.08 4.20
4529 5104 7.671302 TGAATTATTCACTAGCATCTACTCCC 58.329 38.462 3.20 0.00 34.08 4.30
4530 5105 7.330700 GCTGAATTATTCACTAGCATCTACTCC 59.669 40.741 3.20 0.00 35.46 3.85
4531 5106 7.869937 TGCTGAATTATTCACTAGCATCTACTC 59.130 37.037 13.80 0.00 34.65 2.59
4532 5107 7.655328 GTGCTGAATTATTCACTAGCATCTACT 59.345 37.037 18.59 0.00 39.50 2.57
4533 5108 7.439356 TGTGCTGAATTATTCACTAGCATCTAC 59.561 37.037 18.59 9.79 39.50 2.59
4534 5109 7.500141 TGTGCTGAATTATTCACTAGCATCTA 58.500 34.615 18.59 9.41 39.50 1.98
4535 5110 6.351711 TGTGCTGAATTATTCACTAGCATCT 58.648 36.000 18.59 0.00 39.50 2.90
4536 5111 6.609237 TGTGCTGAATTATTCACTAGCATC 57.391 37.500 18.59 13.92 39.50 3.91
4537 5112 6.039047 CCTTGTGCTGAATTATTCACTAGCAT 59.961 38.462 18.59 0.00 39.50 3.79
4538 5113 5.355071 CCTTGTGCTGAATTATTCACTAGCA 59.645 40.000 13.80 13.80 36.44 3.49
4539 5114 5.731686 GCCTTGTGCTGAATTATTCACTAGC 60.732 44.000 3.20 7.08 35.46 3.42
4540 5115 5.220931 GGCCTTGTGCTGAATTATTCACTAG 60.221 44.000 3.20 2.35 40.92 2.57
4541 5116 4.640201 GGCCTTGTGCTGAATTATTCACTA 59.360 41.667 3.20 0.00 40.92 2.74
4542 5117 3.445096 GGCCTTGTGCTGAATTATTCACT 59.555 43.478 3.20 0.00 40.92 3.41
4543 5118 3.774066 GGCCTTGTGCTGAATTATTCAC 58.226 45.455 3.20 2.61 40.92 3.18
4563 5138 1.931172 CTTTCGTTACCAGCCATACGG 59.069 52.381 0.00 0.00 34.93 4.02
4564 5139 1.931172 CCTTTCGTTACCAGCCATACG 59.069 52.381 0.00 0.00 35.46 3.06
4565 5140 1.669265 GCCTTTCGTTACCAGCCATAC 59.331 52.381 0.00 0.00 0.00 2.39
4566 5141 1.279558 TGCCTTTCGTTACCAGCCATA 59.720 47.619 0.00 0.00 0.00 2.74
4568 5143 0.605319 CTGCCTTTCGTTACCAGCCA 60.605 55.000 0.00 0.00 0.00 4.75
4569 5144 0.321298 TCTGCCTTTCGTTACCAGCC 60.321 55.000 0.00 0.00 0.00 4.85
4570 5145 1.739067 ATCTGCCTTTCGTTACCAGC 58.261 50.000 0.00 0.00 0.00 4.85
4571 5146 3.334691 TGAATCTGCCTTTCGTTACCAG 58.665 45.455 0.00 0.00 0.00 4.00
4578 5153 0.095935 CGCACTGAATCTGCCTTTCG 59.904 55.000 0.00 0.00 0.00 3.46
4596 5171 4.973051 GCACATAAGAGTAGACACTGATCG 59.027 45.833 0.00 0.00 34.21 3.69
4599 5174 5.418840 TCATGCACATAAGAGTAGACACTGA 59.581 40.000 0.00 0.00 34.21 3.41
4602 5177 6.983307 AGAATCATGCACATAAGAGTAGACAC 59.017 38.462 0.00 0.00 0.00 3.67
4607 5182 9.649167 CATATCAGAATCATGCACATAAGAGTA 57.351 33.333 0.00 0.00 0.00 2.59
4626 5201 7.700505 TGCTTCAAGTAAAGATTGCATATCAG 58.299 34.615 10.26 0.10 0.00 2.90
4644 5219 2.945008 CAACCTGACAGACTTGCTTCAA 59.055 45.455 3.32 0.00 0.00 2.69
4645 5220 2.092968 ACAACCTGACAGACTTGCTTCA 60.093 45.455 3.32 0.00 0.00 3.02
4646 5221 2.289002 CACAACCTGACAGACTTGCTTC 59.711 50.000 3.32 0.00 0.00 3.86
4647 5222 2.292267 CACAACCTGACAGACTTGCTT 58.708 47.619 3.32 0.00 0.00 3.91
4649 5224 1.668419 ACACAACCTGACAGACTTGC 58.332 50.000 3.32 0.00 0.00 4.01
4650 5225 5.811399 TTTTACACAACCTGACAGACTTG 57.189 39.130 3.32 7.57 0.00 3.16
4651 5226 6.601613 TCATTTTTACACAACCTGACAGACTT 59.398 34.615 3.32 0.00 0.00 3.01
4652 5227 6.119536 TCATTTTTACACAACCTGACAGACT 58.880 36.000 3.32 0.00 0.00 3.24
4654 5229 7.581213 AATCATTTTTACACAACCTGACAGA 57.419 32.000 3.32 0.00 0.00 3.41
4656 5231 7.704472 GTCAAATCATTTTTACACAACCTGACA 59.296 33.333 0.00 0.00 0.00 3.58
4657 5232 7.704472 TGTCAAATCATTTTTACACAACCTGAC 59.296 33.333 0.00 0.00 26.92 3.51
4665 5380 9.180678 CAACCTAGTGTCAAATCATTTTTACAC 57.819 33.333 14.07 14.07 44.63 2.90
4694 5410 0.947244 GCCACCATTAGGATTCTGCG 59.053 55.000 0.00 0.00 38.69 5.18
4768 5484 1.321474 ACATGGAGTGCAGGTGTTTG 58.679 50.000 0.00 0.00 0.00 2.93
4782 5499 8.987890 CCTAAACTCCAAATAAAAACAACATGG 58.012 33.333 0.00 0.00 0.00 3.66
4812 5529 8.695456 GGTCTCATTACCCAATGTTAAATTGAT 58.305 33.333 0.00 0.00 41.96 2.57
4854 5599 9.130661 TCTGTCATGTTTAAATTCTGGAAAAGA 57.869 29.630 0.00 0.00 0.00 2.52
4977 5723 1.511464 CACTCGACGTACCTGCGAC 60.511 63.158 0.00 0.00 35.59 5.19
5063 5809 3.559242 GCTCTCCTGATGCATTGTTCTAC 59.441 47.826 0.00 0.00 0.00 2.59
5107 5853 2.355108 CCATGAACCGTCCTCATTCTGT 60.355 50.000 0.00 0.00 30.99 3.41
5167 5913 6.861572 GCACACCTTCTCCTTGTTTAATAAAC 59.138 38.462 8.82 8.82 41.73 2.01
5168 5914 6.775629 AGCACACCTTCTCCTTGTTTAATAAA 59.224 34.615 0.00 0.00 0.00 1.40
5169 5915 6.206634 CAGCACACCTTCTCCTTGTTTAATAA 59.793 38.462 0.00 0.00 0.00 1.40
5170 5916 5.705441 CAGCACACCTTCTCCTTGTTTAATA 59.295 40.000 0.00 0.00 0.00 0.98
5171 5917 4.520492 CAGCACACCTTCTCCTTGTTTAAT 59.480 41.667 0.00 0.00 0.00 1.40
5172 5918 3.882888 CAGCACACCTTCTCCTTGTTTAA 59.117 43.478 0.00 0.00 0.00 1.52
5173 5919 3.118038 ACAGCACACCTTCTCCTTGTTTA 60.118 43.478 0.00 0.00 0.00 2.01
5174 5920 2.301346 CAGCACACCTTCTCCTTGTTT 58.699 47.619 0.00 0.00 0.00 2.83
5201 5947 6.700960 CCTGCAAAACAACTTGTTGATCAATA 59.299 34.615 18.82 6.04 40.14 1.90
5211 6108 2.159310 TCCGAACCTGCAAAACAACTTG 60.159 45.455 0.00 0.00 0.00 3.16
5286 6183 1.961793 TGTAACACTGTCCAACTGCC 58.038 50.000 0.00 0.00 0.00 4.85
5413 6310 6.057533 TCATCAACATAAGAAGCCATTCGAT 58.942 36.000 0.00 0.00 40.58 3.59
5458 6355 4.832248 TGTCGGTATGCTTGATTTTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
5510 6488 6.147164 CGTAGAAAGTGCAGAATTCAAGGTAA 59.853 38.462 8.44 0.00 0.00 2.85
5541 6538 3.521524 TCGAGATGACACGTATGATCG 57.478 47.619 0.00 0.00 0.00 3.69
5544 6541 5.500645 AGAATTCGAGATGACACGTATGA 57.499 39.130 0.00 0.00 0.00 2.15
5547 6544 6.614160 TGTTTAGAATTCGAGATGACACGTA 58.386 36.000 0.00 0.00 0.00 3.57
5549 6546 5.004821 CCTGTTTAGAATTCGAGATGACACG 59.995 44.000 0.00 0.00 0.00 4.49
5550 6547 5.220491 GCCTGTTTAGAATTCGAGATGACAC 60.220 44.000 0.00 0.00 0.00 3.67
5560 6557 6.248631 GTTCGTGTATGCCTGTTTAGAATTC 58.751 40.000 0.00 0.00 0.00 2.17
5563 6560 3.998341 GGTTCGTGTATGCCTGTTTAGAA 59.002 43.478 0.00 0.00 0.00 2.10
5581 6578 2.764572 TGATTTCTCCCCGTCTAGGTTC 59.235 50.000 0.00 0.00 38.74 3.62
5606 6603 1.644786 GCCCATGCGGTGTTGACTAC 61.645 60.000 2.68 0.00 0.00 2.73
5711 6708 7.278211 ACGATACTGCGCATTAACATAATAG 57.722 36.000 12.24 0.00 33.86 1.73
5733 6730 3.231160 GGAAACCTTTCGTGCATTTACG 58.769 45.455 0.00 0.00 44.98 3.18
5750 6747 3.328343 TCGGTTCAGTTATTCTGGGGAAA 59.672 43.478 0.00 0.00 43.76 3.13
5751 6748 2.907696 TCGGTTCAGTTATTCTGGGGAA 59.092 45.455 0.00 0.00 43.76 3.97
5752 6749 2.542550 TCGGTTCAGTTATTCTGGGGA 58.457 47.619 0.00 0.00 43.76 4.81
5763 6760 9.796180 AGAAGTTATACTATAGATCGGTTCAGT 57.204 33.333 6.78 0.00 0.00 3.41
5839 6836 5.618056 TCGACAGTACTTCGTAGTTCAAT 57.382 39.130 19.69 0.00 37.73 2.57
5857 6854 6.466097 CGAAGAAAAGCTGGAATTAATTCGAC 59.534 38.462 19.41 12.21 38.36 4.20
5885 6882 1.742768 GGATCTCGTTCGGCCTGAT 59.257 57.895 0.00 0.00 0.00 2.90
5946 6943 1.620822 GGAAGTCACCATTGCCAAGT 58.379 50.000 0.00 0.00 0.00 3.16
6006 7066 7.735500 TCAAGATTTCGGTTTAAATCGTGTAG 58.264 34.615 19.64 6.04 46.46 2.74
6052 7112 8.233190 GTCAGCTCCAATCATGTTTATTATAGC 58.767 37.037 0.00 0.00 0.00 2.97
6063 7123 4.452825 AGATTGAGTCAGCTCCAATCATG 58.547 43.478 20.43 0.00 40.95 3.07
6196 7256 7.982354 ACTAATTTAGCCAGAGCAAAGTACTAG 59.018 37.037 0.00 0.00 43.56 2.57
6223 7283 2.716217 AGTTGCTTCATACCAGAAGGC 58.284 47.619 5.92 0.07 44.03 4.35
6245 7305 1.227205 CCAGCAGAGGAGCGACATC 60.227 63.158 0.00 0.00 40.15 3.06
6267 7330 3.722147 TCAAGATATCGCTCTTTCAGCC 58.278 45.455 0.00 0.00 46.74 4.85
7276 8388 2.584835 TGTGTGGCAAATAGGAGCTT 57.415 45.000 0.00 0.00 0.00 3.74
7443 8566 2.999355 GTTGCTGCTCTCTTAAGTCTGG 59.001 50.000 1.63 0.00 0.00 3.86
7451 8574 2.627515 TGTCAAGTTGCTGCTCTCTT 57.372 45.000 0.00 0.16 0.00 2.85
7484 8693 0.538584 TCCAGTGAGCAGGCTATGTG 59.461 55.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.