Multiple sequence alignment - TraesCS7D01G003400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G003400 chr7D 100.000 3413 0 0 1 3413 2000994 1997582 0.000000e+00 6303.0
1 TraesCS7D01G003400 chr7D 87.361 1440 152 12 1001 2425 30761253 30759829 0.000000e+00 1624.0
2 TraesCS7D01G003400 chr7D 78.955 1416 233 42 1016 2376 625615354 625616759 0.000000e+00 904.0
3 TraesCS7D01G003400 chr7D 86.977 215 8 5 2695 2889 77821520 77821734 1.230000e-54 224.0
4 TraesCS7D01G003400 chr7D 83.929 224 13 10 2687 2889 380643456 380643677 3.480000e-45 193.0
5 TraesCS7D01G003400 chr4A 89.093 2338 124 50 151 2425 742587378 742585109 0.000000e+00 2784.0
6 TraesCS7D01G003400 chr4A 87.818 1453 136 20 1003 2425 675526373 675524932 0.000000e+00 1664.0
7 TraesCS7D01G003400 chr4A 87.134 1399 156 13 1001 2383 697970055 697971445 0.000000e+00 1565.0
8 TraesCS7D01G003400 chr4A 81.287 513 52 20 2938 3413 742583575 742583070 3.220000e-100 375.0
9 TraesCS7D01G003400 chr4A 87.943 141 12 3 3153 3292 742583935 742583799 9.800000e-36 161.0
10 TraesCS7D01G003400 chr7A 91.031 1639 93 22 820 2437 1690633 1692238 0.000000e+00 2163.0
11 TraesCS7D01G003400 chr7A 87.808 1419 134 17 995 2376 63060458 63059042 0.000000e+00 1626.0
12 TraesCS7D01G003400 chr7A 86.512 215 9 8 2695 2889 375047162 375047376 5.730000e-53 219.0
13 TraesCS7D01G003400 chr7A 80.800 125 9 1 646 770 1690218 1690327 2.180000e-12 84.2
14 TraesCS7D01G003400 chr7A 100.000 34 0 0 2543 2576 1692305 1692338 2.840000e-06 63.9
15 TraesCS7D01G003400 chr7B 77.498 1431 248 44 1016 2384 682374163 682372745 0.000000e+00 791.0
16 TraesCS7D01G003400 chr3B 76.711 1417 247 52 995 2362 136450350 136448968 0.000000e+00 712.0
17 TraesCS7D01G003400 chr3B 84.325 504 62 10 151 644 778000444 778000940 8.570000e-131 477.0
18 TraesCS7D01G003400 chr3B 84.158 505 64 9 151 645 534159168 534159666 3.080000e-130 475.0
19 TraesCS7D01G003400 chr3B 86.893 206 8 7 2703 2889 497762359 497762154 2.670000e-51 213.0
20 TraesCS7D01G003400 chr3B 85.315 143 8 7 2760 2892 601257285 601257146 5.940000e-28 135.0
21 TraesCS7D01G003400 chr3D 76.587 1418 247 49 995 2362 86342898 86341516 0.000000e+00 701.0
22 TraesCS7D01G003400 chr3D 84.493 503 62 9 151 643 24569214 24569710 1.840000e-132 483.0
23 TraesCS7D01G003400 chr3D 86.765 204 13 5 2703 2892 120012332 120012129 7.420000e-52 215.0
24 TraesCS7D01G003400 chr3D 84.656 189 16 3 2701 2877 462856364 462856551 3.500000e-40 176.0
25 TraesCS7D01G003400 chr3D 88.393 112 3 3 2695 2796 162565409 162565520 3.580000e-25 126.0
26 TraesCS7D01G003400 chr3D 89.524 105 3 1 2703 2799 503796180 503796076 3.580000e-25 126.0
27 TraesCS7D01G003400 chr3D 100.000 29 0 0 126 154 115039240 115039268 2.000000e-03 54.7
28 TraesCS7D01G003400 chr6D 84.980 506 60 9 151 646 454064636 454064137 1.830000e-137 499.0
29 TraesCS7D01G003400 chr6D 86.559 186 7 3 2725 2892 94401869 94401684 4.500000e-44 189.0
30 TraesCS7D01G003400 chr6D 88.073 109 3 3 2695 2793 385091154 385091262 1.660000e-23 121.0
31 TraesCS7D01G003400 chr6B 84.783 506 61 9 151 646 61211694 61212193 8.510000e-136 494.0
32 TraesCS7D01G003400 chr6B 83.333 210 12 5 2703 2889 360855881 360855672 4.530000e-39 172.0
33 TraesCS7D01G003400 chr6B 90.541 74 6 1 3040 3113 151239881 151239953 2.800000e-16 97.1
34 TraesCS7D01G003400 chr6B 90.541 74 6 1 3040 3113 371647860 371647932 2.800000e-16 97.1
35 TraesCS7D01G003400 chr2B 84.585 506 62 9 151 646 134253230 134253729 3.960000e-134 488.0
36 TraesCS7D01G003400 chr2B 82.014 139 10 5 2703 2832 521983388 521983256 1.680000e-18 104.0
37 TraesCS7D01G003400 chr6A 84.418 507 63 9 151 647 591940800 591940300 5.120000e-133 484.0
38 TraesCS7D01G003400 chr6A 90.541 74 6 1 3040 3113 84426440 84426368 2.800000e-16 97.1
39 TraesCS7D01G003400 chr5B 84.158 505 64 9 151 645 710236120 710235622 3.080000e-130 475.0
40 TraesCS7D01G003400 chr1A 84.232 501 63 8 151 641 554782911 554783405 1.110000e-129 473.0
41 TraesCS7D01G003400 chr1A 85.455 165 6 6 2743 2889 477197795 477197959 4.560000e-34 156.0
42 TraesCS7D01G003400 chr1A 90.541 74 6 1 3040 3113 94630908 94630980 2.800000e-16 97.1
43 TraesCS7D01G003400 chr1A 82.979 94 10 4 2703 2796 121009687 121009600 2.820000e-11 80.5
44 TraesCS7D01G003400 chr5D 86.512 215 9 5 2695 2889 193294796 193295010 5.730000e-53 219.0
45 TraesCS7D01G003400 chr5D 86.111 216 9 9 2695 2889 474432488 474432703 2.670000e-51 213.0
46 TraesCS7D01G003400 chr4D 88.421 190 7 2 2703 2877 285982250 285982061 7.420000e-52 215.0
47 TraesCS7D01G003400 chr4D 86.256 211 8 6 2703 2892 358152770 358152560 3.450000e-50 209.0
48 TraesCS7D01G003400 chr4D 100.000 30 0 0 121 150 122149117 122149146 4.760000e-04 56.5
49 TraesCS7D01G003400 chr1B 86.893 206 8 4 2703 2889 490710759 490710554 2.670000e-51 213.0
50 TraesCS7D01G003400 chr1B 90.541 74 6 1 3040 3113 135056323 135056395 2.800000e-16 97.1
51 TraesCS7D01G003400 chr1B 90.541 74 6 1 3040 3113 619203698 619203626 2.800000e-16 97.1
52 TraesCS7D01G003400 chr1B 100.000 28 0 0 2881 2908 674575196 674575169 6.000000e-03 52.8
53 TraesCS7D01G003400 chr2D 84.889 225 10 8 2687 2889 320686237 320686459 4.460000e-49 206.0
54 TraesCS7D01G003400 chr1D 89.524 105 3 1 2703 2799 388299762 388299658 3.580000e-25 126.0
55 TraesCS7D01G003400 chr1D 88.571 105 4 1 2703 2799 410958957 410958853 1.660000e-23 121.0
56 TraesCS7D01G003400 chrUn 90.541 74 6 1 3040 3113 217899286 217899358 2.800000e-16 97.1
57 TraesCS7D01G003400 chr4B 90.541 74 6 1 3040 3113 495529734 495529806 2.800000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G003400 chr7D 1997582 2000994 3412 True 6303.000000 6303 100.000000 1 3413 1 chr7D.!!$R1 3412
1 TraesCS7D01G003400 chr7D 30759829 30761253 1424 True 1624.000000 1624 87.361000 1001 2425 1 chr7D.!!$R2 1424
2 TraesCS7D01G003400 chr7D 625615354 625616759 1405 False 904.000000 904 78.955000 1016 2376 1 chr7D.!!$F3 1360
3 TraesCS7D01G003400 chr4A 675524932 675526373 1441 True 1664.000000 1664 87.818000 1003 2425 1 chr4A.!!$R1 1422
4 TraesCS7D01G003400 chr4A 697970055 697971445 1390 False 1565.000000 1565 87.134000 1001 2383 1 chr4A.!!$F1 1382
5 TraesCS7D01G003400 chr4A 742583070 742587378 4308 True 1106.666667 2784 86.107667 151 3413 3 chr4A.!!$R2 3262
6 TraesCS7D01G003400 chr7A 63059042 63060458 1416 True 1626.000000 1626 87.808000 995 2376 1 chr7A.!!$R1 1381
7 TraesCS7D01G003400 chr7A 1690218 1692338 2120 False 770.366667 2163 90.610333 646 2576 3 chr7A.!!$F2 1930
8 TraesCS7D01G003400 chr7B 682372745 682374163 1418 True 791.000000 791 77.498000 1016 2384 1 chr7B.!!$R1 1368
9 TraesCS7D01G003400 chr3B 136448968 136450350 1382 True 712.000000 712 76.711000 995 2362 1 chr3B.!!$R1 1367
10 TraesCS7D01G003400 chr3D 86341516 86342898 1382 True 701.000000 701 76.587000 995 2362 1 chr3D.!!$R1 1367
11 TraesCS7D01G003400 chr6A 591940300 591940800 500 True 484.000000 484 84.418000 151 647 1 chr6A.!!$R2 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.034767 TCCCCTCGCGAGAACTCTTA 60.035 55.0 36.59 11.86 41.32 2.10 F
299 302 0.039764 TCTCGTGGGATCTGGTCTGT 59.960 55.0 0.00 0.00 0.00 3.41 F
857 1181 0.693049 ACCCCCAGTCACAATCACTC 59.307 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1618 0.317160 CGTCCCTGTGTTGCTCTGTA 59.683 55.000 0.0 0.0 0.0 2.74 R
1242 1621 1.668294 CTCGTCCCTGTGTTGCTCT 59.332 57.895 0.0 0.0 0.0 4.09 R
2453 4247 0.109532 TCGGCACCAACCAGAATCAA 59.890 50.000 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.521075 CATTGCGACGGACCATCT 57.479 55.556 0.00 0.00 0.00 2.90
18 19 3.659850 CATTGCGACGGACCATCTA 57.340 52.632 0.00 0.00 0.00 1.98
19 20 1.491670 CATTGCGACGGACCATCTAG 58.508 55.000 0.00 0.00 0.00 2.43
20 21 1.112113 ATTGCGACGGACCATCTAGT 58.888 50.000 0.00 0.00 0.00 2.57
21 22 0.454600 TTGCGACGGACCATCTAGTC 59.545 55.000 0.00 0.00 35.95 2.59
22 23 0.678684 TGCGACGGACCATCTAGTCA 60.679 55.000 0.00 0.00 38.59 3.41
23 24 0.669077 GCGACGGACCATCTAGTCAT 59.331 55.000 0.00 0.00 38.59 3.06
24 25 1.878088 GCGACGGACCATCTAGTCATA 59.122 52.381 0.00 0.00 38.59 2.15
25 26 2.488545 GCGACGGACCATCTAGTCATAT 59.511 50.000 0.00 0.00 38.59 1.78
26 27 3.426426 GCGACGGACCATCTAGTCATATC 60.426 52.174 0.00 0.00 38.59 1.63
27 28 3.751698 CGACGGACCATCTAGTCATATCA 59.248 47.826 0.00 0.00 38.59 2.15
28 29 4.396478 CGACGGACCATCTAGTCATATCAT 59.604 45.833 0.00 0.00 38.59 2.45
29 30 5.106118 CGACGGACCATCTAGTCATATCATT 60.106 44.000 0.00 0.00 38.59 2.57
30 31 6.570571 CGACGGACCATCTAGTCATATCATTT 60.571 42.308 0.00 0.00 38.59 2.32
31 32 6.459066 ACGGACCATCTAGTCATATCATTTG 58.541 40.000 0.00 0.00 38.59 2.32
32 33 6.267699 ACGGACCATCTAGTCATATCATTTGA 59.732 38.462 0.00 0.00 38.59 2.69
33 34 6.810676 CGGACCATCTAGTCATATCATTTGAG 59.189 42.308 0.00 0.00 38.59 3.02
34 35 7.102346 GGACCATCTAGTCATATCATTTGAGG 58.898 42.308 0.00 0.00 38.59 3.86
35 36 6.471146 ACCATCTAGTCATATCATTTGAGGC 58.529 40.000 0.00 0.00 0.00 4.70
36 37 5.879223 CCATCTAGTCATATCATTTGAGGCC 59.121 44.000 0.00 0.00 0.00 5.19
37 38 6.470278 CATCTAGTCATATCATTTGAGGCCA 58.530 40.000 5.01 0.00 0.00 5.36
38 39 6.106648 TCTAGTCATATCATTTGAGGCCAG 57.893 41.667 5.01 0.00 0.00 4.85
39 40 5.840693 TCTAGTCATATCATTTGAGGCCAGA 59.159 40.000 5.01 0.00 0.00 3.86
40 41 4.970711 AGTCATATCATTTGAGGCCAGAG 58.029 43.478 5.01 0.00 0.00 3.35
41 42 4.411540 AGTCATATCATTTGAGGCCAGAGT 59.588 41.667 5.01 0.00 0.00 3.24
42 43 5.604231 AGTCATATCATTTGAGGCCAGAGTA 59.396 40.000 5.01 0.00 0.00 2.59
43 44 5.698545 GTCATATCATTTGAGGCCAGAGTAC 59.301 44.000 5.01 0.00 0.00 2.73
44 45 3.567478 ATCATTTGAGGCCAGAGTACC 57.433 47.619 5.01 0.00 0.00 3.34
45 46 1.559682 TCATTTGAGGCCAGAGTACCC 59.440 52.381 5.01 0.00 0.00 3.69
46 47 0.919710 ATTTGAGGCCAGAGTACCCC 59.080 55.000 5.01 0.00 0.00 4.95
47 48 0.178873 TTTGAGGCCAGAGTACCCCT 60.179 55.000 5.01 0.00 0.00 4.79
48 49 0.178873 TTGAGGCCAGAGTACCCCTT 60.179 55.000 5.01 0.00 0.00 3.95
49 50 0.617820 TGAGGCCAGAGTACCCCTTC 60.618 60.000 5.01 0.00 0.00 3.46
50 51 1.677637 GAGGCCAGAGTACCCCTTCG 61.678 65.000 5.01 0.00 0.00 3.79
51 52 2.187163 GCCAGAGTACCCCTTCGC 59.813 66.667 0.00 0.00 0.00 4.70
52 53 2.359967 GCCAGAGTACCCCTTCGCT 61.360 63.158 0.00 0.00 0.00 4.93
53 54 1.817209 CCAGAGTACCCCTTCGCTC 59.183 63.158 0.00 0.00 0.00 5.03
54 55 1.677637 CCAGAGTACCCCTTCGCTCC 61.678 65.000 0.00 0.00 0.00 4.70
55 56 1.381463 AGAGTACCCCTTCGCTCCC 60.381 63.158 0.00 0.00 0.00 4.30
56 57 2.365237 AGTACCCCTTCGCTCCCC 60.365 66.667 0.00 0.00 0.00 4.81
57 58 2.365237 GTACCCCTTCGCTCCCCT 60.365 66.667 0.00 0.00 0.00 4.79
58 59 2.042230 TACCCCTTCGCTCCCCTC 60.042 66.667 0.00 0.00 0.00 4.30
67 68 3.453679 GCTCCCCTCGCGAGAACT 61.454 66.667 36.59 0.00 41.32 3.01
68 69 2.802106 CTCCCCTCGCGAGAACTC 59.198 66.667 36.59 0.00 41.32 3.01
69 70 1.751162 CTCCCCTCGCGAGAACTCT 60.751 63.158 36.59 0.00 41.32 3.24
70 71 1.304217 TCCCCTCGCGAGAACTCTT 60.304 57.895 36.59 0.00 41.32 2.85
71 72 0.034767 TCCCCTCGCGAGAACTCTTA 60.035 55.000 36.59 11.86 41.32 2.10
72 73 1.033574 CCCCTCGCGAGAACTCTTAT 58.966 55.000 36.59 0.00 41.32 1.73
73 74 1.001158 CCCCTCGCGAGAACTCTTATC 60.001 57.143 36.59 0.00 41.32 1.75
74 75 1.950909 CCCTCGCGAGAACTCTTATCT 59.049 52.381 36.59 0.00 41.32 1.98
75 76 3.139850 CCCTCGCGAGAACTCTTATCTA 58.860 50.000 36.59 0.00 41.32 1.98
76 77 3.187637 CCCTCGCGAGAACTCTTATCTAG 59.812 52.174 36.59 14.75 41.32 2.43
77 78 3.364565 CCTCGCGAGAACTCTTATCTAGC 60.365 52.174 36.59 0.00 40.71 3.42
78 79 3.468770 TCGCGAGAACTCTTATCTAGCT 58.531 45.455 3.71 0.00 41.58 3.32
79 80 4.629092 TCGCGAGAACTCTTATCTAGCTA 58.371 43.478 3.71 0.00 41.58 3.32
80 81 4.687018 TCGCGAGAACTCTTATCTAGCTAG 59.313 45.833 15.01 15.01 41.58 3.42
81 82 4.142988 CGCGAGAACTCTTATCTAGCTAGG 60.143 50.000 20.58 5.94 41.58 3.02
82 83 4.155280 GCGAGAACTCTTATCTAGCTAGGG 59.845 50.000 20.58 8.83 40.86 3.53
83 84 5.310451 CGAGAACTCTTATCTAGCTAGGGT 58.690 45.833 20.58 12.07 0.00 4.34
84 85 5.766174 CGAGAACTCTTATCTAGCTAGGGTT 59.234 44.000 20.58 9.69 35.38 4.11
85 86 6.263617 CGAGAACTCTTATCTAGCTAGGGTTT 59.736 42.308 20.58 6.33 32.94 3.27
86 87 7.520937 CGAGAACTCTTATCTAGCTAGGGTTTC 60.521 44.444 20.58 12.54 32.94 2.78
87 88 7.359056 AGAACTCTTATCTAGCTAGGGTTTCT 58.641 38.462 20.58 14.23 32.94 2.52
88 89 7.504574 AGAACTCTTATCTAGCTAGGGTTTCTC 59.495 40.741 20.58 8.32 32.94 2.87
89 90 6.918033 ACTCTTATCTAGCTAGGGTTTCTCT 58.082 40.000 20.58 0.00 0.00 3.10
90 91 6.775629 ACTCTTATCTAGCTAGGGTTTCTCTG 59.224 42.308 20.58 6.05 0.00 3.35
91 92 6.674573 TCTTATCTAGCTAGGGTTTCTCTGT 58.325 40.000 20.58 0.00 0.00 3.41
92 93 6.773685 TCTTATCTAGCTAGGGTTTCTCTGTC 59.226 42.308 20.58 0.00 0.00 3.51
93 94 4.594675 TCTAGCTAGGGTTTCTCTGTCT 57.405 45.455 20.58 0.00 0.00 3.41
94 95 4.936802 TCTAGCTAGGGTTTCTCTGTCTT 58.063 43.478 20.58 0.00 0.00 3.01
95 96 5.334421 TCTAGCTAGGGTTTCTCTGTCTTT 58.666 41.667 20.58 0.00 0.00 2.52
96 97 4.545208 AGCTAGGGTTTCTCTGTCTTTC 57.455 45.455 0.00 0.00 0.00 2.62
97 98 3.056465 AGCTAGGGTTTCTCTGTCTTTCG 60.056 47.826 0.00 0.00 0.00 3.46
98 99 2.171341 AGGGTTTCTCTGTCTTTCGC 57.829 50.000 0.00 0.00 0.00 4.70
99 100 1.157585 GGGTTTCTCTGTCTTTCGCC 58.842 55.000 0.00 0.00 0.00 5.54
100 101 1.542547 GGGTTTCTCTGTCTTTCGCCA 60.543 52.381 0.00 0.00 0.00 5.69
101 102 1.801178 GGTTTCTCTGTCTTTCGCCAG 59.199 52.381 0.00 0.00 0.00 4.85
102 103 2.484889 GTTTCTCTGTCTTTCGCCAGT 58.515 47.619 0.00 0.00 0.00 4.00
103 104 2.154854 TTCTCTGTCTTTCGCCAGTG 57.845 50.000 0.00 0.00 0.00 3.66
104 105 1.040646 TCTCTGTCTTTCGCCAGTGT 58.959 50.000 0.00 0.00 0.00 3.55
105 106 1.412710 TCTCTGTCTTTCGCCAGTGTT 59.587 47.619 0.00 0.00 0.00 3.32
106 107 1.528586 CTCTGTCTTTCGCCAGTGTTG 59.471 52.381 0.00 0.00 0.00 3.33
107 108 0.040958 CTGTCTTTCGCCAGTGTTGC 60.041 55.000 0.00 0.00 0.00 4.17
108 109 0.463654 TGTCTTTCGCCAGTGTTGCT 60.464 50.000 0.00 0.00 0.00 3.91
109 110 0.040958 GTCTTTCGCCAGTGTTGCTG 60.041 55.000 0.00 0.00 44.63 4.41
116 117 3.357079 CAGTGTTGCTGGTCCGCC 61.357 66.667 3.72 0.00 41.42 6.13
117 118 3.560251 AGTGTTGCTGGTCCGCCT 61.560 61.111 3.72 0.00 35.27 5.52
118 119 3.050275 GTGTTGCTGGTCCGCCTC 61.050 66.667 3.72 0.00 35.27 4.70
119 120 4.680237 TGTTGCTGGTCCGCCTCG 62.680 66.667 3.72 0.00 35.27 4.63
192 194 2.026301 CGGCGGCGGTTTTTGAAA 59.974 55.556 25.36 0.00 0.00 2.69
200 202 4.201580 GCGGCGGTTTTTGAAAATAGAATG 60.202 41.667 9.78 0.00 0.00 2.67
205 207 6.308041 GCGGTTTTTGAAAATAGAATGAGGTC 59.692 38.462 0.00 0.00 0.00 3.85
215 217 3.943137 AATGAGGTCCTCCCCGCCA 62.943 63.158 16.60 0.00 0.00 5.69
299 302 0.039764 TCTCGTGGGATCTGGTCTGT 59.960 55.000 0.00 0.00 0.00 3.41
341 344 3.179939 GAGCCGGTCTTCGTTCGC 61.180 66.667 1.90 0.00 37.11 4.70
376 387 1.865340 GTTGGATCCTTTCGATACGCC 59.135 52.381 14.23 0.00 34.02 5.68
388 399 2.356695 TCGATACGCCTCTTTTCATCGA 59.643 45.455 0.00 0.00 41.19 3.59
416 428 1.490490 TGCTTTCTGGTGTTCTGGTCT 59.510 47.619 0.00 0.00 0.00 3.85
440 479 1.003718 GGCCTTAGCACCACGACTT 60.004 57.895 0.00 0.00 42.56 3.01
448 487 1.372997 CACCACGACTTCCCGACTG 60.373 63.158 0.00 0.00 0.00 3.51
449 488 1.831286 ACCACGACTTCCCGACTGT 60.831 57.895 0.00 0.00 0.00 3.55
450 489 1.080705 CCACGACTTCCCGACTGTC 60.081 63.158 0.00 0.00 0.00 3.51
451 490 1.524863 CCACGACTTCCCGACTGTCT 61.525 60.000 6.21 0.00 0.00 3.41
452 491 1.162698 CACGACTTCCCGACTGTCTA 58.837 55.000 6.21 0.00 0.00 2.59
453 492 1.135746 CACGACTTCCCGACTGTCTAC 60.136 57.143 6.21 0.00 0.00 2.59
454 493 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
455 494 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
456 495 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
457 496 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
458 497 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
459 498 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
460 499 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
461 500 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
462 501 4.084287 TCCCGACTGTCTACTACAACAAT 58.916 43.478 6.21 0.00 37.74 2.71
463 502 4.082408 TCCCGACTGTCTACTACAACAATG 60.082 45.833 6.21 0.00 37.74 2.82
464 503 4.082408 CCCGACTGTCTACTACAACAATGA 60.082 45.833 6.21 0.00 37.74 2.57
465 504 4.857588 CCGACTGTCTACTACAACAATGAC 59.142 45.833 6.21 0.00 37.74 3.06
466 505 5.458015 CGACTGTCTACTACAACAATGACA 58.542 41.667 6.21 0.00 37.74 3.58
467 506 6.093404 CGACTGTCTACTACAACAATGACAT 58.907 40.000 6.21 0.00 37.74 3.06
468 507 6.586463 CGACTGTCTACTACAACAATGACATT 59.414 38.462 6.21 0.00 37.74 2.71
469 508 7.410835 CGACTGTCTACTACAACAATGACATTG 60.411 40.741 23.62 23.62 37.74 2.82
482 521 1.960689 TGACATTGTCTGACTCCGACA 59.039 47.619 17.26 0.00 39.45 4.35
527 566 3.288308 CTTCGGCTCGCTCCAGTGT 62.288 63.158 0.00 0.00 0.00 3.55
540 579 3.189287 GCTCCAGTGTTTGTAGTCATTGG 59.811 47.826 0.00 0.00 40.96 3.16
580 619 7.602753 ACCTGGATGTAATTTTTACTTCTTGC 58.397 34.615 0.00 0.00 0.00 4.01
595 634 5.598769 ACTTCTTGCGTTCTTTGTACTACT 58.401 37.500 0.00 0.00 0.00 2.57
596 635 6.742109 ACTTCTTGCGTTCTTTGTACTACTA 58.258 36.000 0.00 0.00 0.00 1.82
598 637 7.541437 ACTTCTTGCGTTCTTTGTACTACTATC 59.459 37.037 0.00 0.00 0.00 2.08
599 638 7.154435 TCTTGCGTTCTTTGTACTACTATCT 57.846 36.000 0.00 0.00 0.00 1.98
600 639 7.600065 TCTTGCGTTCTTTGTACTACTATCTT 58.400 34.615 0.00 0.00 0.00 2.40
601 640 8.733458 TCTTGCGTTCTTTGTACTACTATCTTA 58.267 33.333 0.00 0.00 0.00 2.10
688 727 7.332557 TCTTGATTGGAAATTTGGAATCCATG 58.667 34.615 1.39 0.00 42.53 3.66
692 731 5.664294 TGGAAATTTGGAATCCATGTGAG 57.336 39.130 1.39 0.00 38.30 3.51
717 756 7.607991 AGATCGACTGATTTGGTAAAACAGAAT 59.392 33.333 15.46 7.90 34.09 2.40
718 757 7.129109 TCGACTGATTTGGTAAAACAGAATC 57.871 36.000 15.46 2.99 32.93 2.52
719 758 6.015504 CGACTGATTTGGTAAAACAGAATCG 58.984 40.000 15.46 11.82 32.93 3.34
720 759 6.254281 ACTGATTTGGTAAAACAGAATCGG 57.746 37.500 15.46 8.51 38.46 4.18
721 760 5.768164 ACTGATTTGGTAAAACAGAATCGGT 59.232 36.000 15.46 9.03 39.96 4.69
722 761 6.938030 ACTGATTTGGTAAAACAGAATCGGTA 59.062 34.615 15.46 0.00 41.82 4.02
723 762 7.446013 ACTGATTTGGTAAAACAGAATCGGTAA 59.554 33.333 15.46 0.00 41.82 2.85
724 763 8.343168 TGATTTGGTAAAACAGAATCGGTAAT 57.657 30.769 0.00 0.00 31.15 1.89
725 764 9.451002 TGATTTGGTAAAACAGAATCGGTAATA 57.549 29.630 0.00 0.00 31.15 0.98
728 767 9.896263 TTTGGTAAAACAGAATCGGTAATAAAC 57.104 29.630 0.00 0.00 0.00 2.01
729 768 8.618702 TGGTAAAACAGAATCGGTAATAAACA 57.381 30.769 0.00 0.00 0.00 2.83
730 769 8.505625 TGGTAAAACAGAATCGGTAATAAACAC 58.494 33.333 0.00 0.00 0.00 3.32
731 770 7.689400 GGTAAAACAGAATCGGTAATAAACACG 59.311 37.037 0.00 0.00 0.00 4.49
828 1152 3.030668 CAATTTTTGGAGGAGTGCCAC 57.969 47.619 0.00 0.00 34.56 5.01
855 1179 1.247567 CAACCCCCAGTCACAATCAC 58.752 55.000 0.00 0.00 0.00 3.06
857 1181 0.693049 ACCCCCAGTCACAATCACTC 59.307 55.000 0.00 0.00 0.00 3.51
898 1223 6.607198 CCAGGGGCTATAAATCTCTTTCAAAA 59.393 38.462 0.00 0.00 0.00 2.44
911 1236 9.831737 AATCTCTTTCAAAATTTGTGATCTACG 57.168 29.630 5.56 0.00 0.00 3.51
912 1237 8.378172 TCTCTTTCAAAATTTGTGATCTACGT 57.622 30.769 5.56 0.00 0.00 3.57
950 1275 2.306847 CAGCTACCAACAAACCAACCT 58.693 47.619 0.00 0.00 0.00 3.50
951 1276 2.034558 CAGCTACCAACAAACCAACCTG 59.965 50.000 0.00 0.00 0.00 4.00
952 1277 1.339929 GCTACCAACAAACCAACCTGG 59.660 52.381 0.00 0.00 45.02 4.45
987 1327 5.360999 GGACCAAATCTTTTCTTATCCCCAG 59.639 44.000 0.00 0.00 0.00 4.45
1125 1477 4.425772 TCTCCTCCAACTACATCCAGAAA 58.574 43.478 0.00 0.00 0.00 2.52
1299 1684 3.052620 CTGCTCGGTCCACGTCGAT 62.053 63.158 0.00 0.00 44.69 3.59
2253 2708 0.878961 ACAAGTTCGACGGCAAGACC 60.879 55.000 0.00 0.00 0.00 3.85
2419 2874 2.636830 AGAAGGCCACTTGAATCATCG 58.363 47.619 5.01 0.00 36.97 3.84
2425 3770 2.289002 GCCACTTGAATCATCGTCCATC 59.711 50.000 0.00 0.00 0.00 3.51
2426 3771 2.541346 CCACTTGAATCATCGTCCATCG 59.459 50.000 0.00 0.00 41.41 3.84
2447 3792 0.032952 TGTCAACACCGTACCTCTGC 59.967 55.000 0.00 0.00 0.00 4.26
2453 4247 1.178276 CACCGTACCTCTGCTCTTCT 58.822 55.000 0.00 0.00 0.00 2.85
2462 4256 3.055240 ACCTCTGCTCTTCTTGATTCTGG 60.055 47.826 0.00 0.00 0.00 3.86
2488 4282 2.358582 TGCCGATCACCAAAATATGCTG 59.641 45.455 0.00 0.00 0.00 4.41
2523 4322 7.593273 TCATTTTGTTCGTGTGATTGATTAACC 59.407 33.333 0.00 0.00 0.00 2.85
2527 4326 5.475220 TGTTCGTGTGATTGATTAACCCAAT 59.525 36.000 5.01 5.01 36.98 3.16
2530 4329 5.295787 TCGTGTGATTGATTAACCCAATAGC 59.704 40.000 5.26 3.36 34.67 2.97
2533 4332 7.491682 GTGTGATTGATTAACCCAATAGCAAT 58.508 34.615 5.26 0.00 34.67 3.56
2538 4337 8.306038 GATTGATTAACCCAATAGCAATATGCA 58.694 33.333 5.01 0.00 38.87 3.96
2576 4375 5.232838 GGCTTTGAATGACAACAAGTGAAAG 59.767 40.000 0.00 0.00 38.29 2.62
2577 4376 6.035843 GCTTTGAATGACAACAAGTGAAAGA 58.964 36.000 0.00 0.00 38.29 2.52
2578 4377 6.698766 GCTTTGAATGACAACAAGTGAAAGAT 59.301 34.615 0.00 0.00 38.29 2.40
2579 4378 7.306399 GCTTTGAATGACAACAAGTGAAAGATG 60.306 37.037 0.00 0.00 38.29 2.90
2580 4379 6.698008 TGAATGACAACAAGTGAAAGATGT 57.302 33.333 0.00 0.00 0.00 3.06
2581 4380 7.099266 TGAATGACAACAAGTGAAAGATGTT 57.901 32.000 0.00 0.00 37.76 2.71
2588 4387 7.169035 CAACAAGTGAAAGATGTTGGATTTG 57.831 36.000 9.40 0.00 46.28 2.32
2589 4388 6.469782 ACAAGTGAAAGATGTTGGATTTGT 57.530 33.333 0.00 0.00 0.00 2.83
2590 4389 6.275335 ACAAGTGAAAGATGTTGGATTTGTG 58.725 36.000 0.00 0.00 0.00 3.33
2591 4390 6.096705 ACAAGTGAAAGATGTTGGATTTGTGA 59.903 34.615 0.00 0.00 0.00 3.58
2592 4391 6.713762 AGTGAAAGATGTTGGATTTGTGAA 57.286 33.333 0.00 0.00 0.00 3.18
2606 4405 7.274447 TGGATTTGTGAAAAGAAATTTGCTCT 58.726 30.769 0.00 0.00 0.00 4.09
2614 4413 8.819974 GTGAAAAGAAATTTGCTCTGATTTGAA 58.180 29.630 0.00 0.00 0.00 2.69
2655 4454 5.239359 CGAGAAGCATGGATTTGATTTGA 57.761 39.130 0.00 0.00 0.00 2.69
2656 4455 5.032863 CGAGAAGCATGGATTTGATTTGAC 58.967 41.667 0.00 0.00 0.00 3.18
2657 4456 5.163683 CGAGAAGCATGGATTTGATTTGACT 60.164 40.000 0.00 0.00 0.00 3.41
2666 4465 4.704057 GGATTTGATTTGACTGAGGCTTCT 59.296 41.667 0.00 0.00 0.00 2.85
2670 4469 4.074970 TGATTTGACTGAGGCTTCTTTCC 58.925 43.478 0.00 0.00 0.00 3.13
2676 4475 0.698818 TGAGGCTTCTTTCCTTCCCC 59.301 55.000 0.00 0.00 33.24 4.81
2679 4478 1.203570 AGGCTTCTTTCCTTCCCCCTA 60.204 52.381 0.00 0.00 0.00 3.53
2680 4479 1.639108 GGCTTCTTTCCTTCCCCCTAA 59.361 52.381 0.00 0.00 0.00 2.69
2681 4480 2.620886 GGCTTCTTTCCTTCCCCCTAAC 60.621 54.545 0.00 0.00 0.00 2.34
2682 4481 2.041216 GCTTCTTTCCTTCCCCCTAACA 59.959 50.000 0.00 0.00 0.00 2.41
2683 4482 3.309193 GCTTCTTTCCTTCCCCCTAACAT 60.309 47.826 0.00 0.00 0.00 2.71
2684 4483 4.273318 CTTCTTTCCTTCCCCCTAACATG 58.727 47.826 0.00 0.00 0.00 3.21
2685 4484 2.025321 TCTTTCCTTCCCCCTAACATGC 60.025 50.000 0.00 0.00 0.00 4.06
2686 4485 1.681229 TTCCTTCCCCCTAACATGCT 58.319 50.000 0.00 0.00 0.00 3.79
2687 4486 2.579624 TCCTTCCCCCTAACATGCTA 57.420 50.000 0.00 0.00 0.00 3.49
2688 4487 2.408565 TCCTTCCCCCTAACATGCTAG 58.591 52.381 0.00 0.00 0.00 3.42
2689 4488 2.127708 CCTTCCCCCTAACATGCTAGT 58.872 52.381 2.60 0.00 0.00 2.57
2690 4489 2.158755 CCTTCCCCCTAACATGCTAGTG 60.159 54.545 2.60 0.00 0.00 2.74
2691 4490 1.507140 TCCCCCTAACATGCTAGTGG 58.493 55.000 2.60 0.33 0.00 4.00
2692 4491 0.474184 CCCCCTAACATGCTAGTGGG 59.526 60.000 9.03 9.03 31.21 4.61
2693 4492 0.474184 CCCCTAACATGCTAGTGGGG 59.526 60.000 16.35 14.56 46.89 4.96
2694 4493 1.507140 CCCTAACATGCTAGTGGGGA 58.493 55.000 11.89 0.00 37.47 4.81
2695 4494 1.417890 CCCTAACATGCTAGTGGGGAG 59.582 57.143 11.89 0.00 37.47 4.30
2696 4495 2.119495 CCTAACATGCTAGTGGGGAGT 58.881 52.381 2.60 0.00 0.00 3.85
2697 4496 3.305720 CCTAACATGCTAGTGGGGAGTA 58.694 50.000 2.60 0.00 0.00 2.59
2698 4497 3.709653 CCTAACATGCTAGTGGGGAGTAA 59.290 47.826 2.60 0.00 0.00 2.24
2699 4498 3.629142 AACATGCTAGTGGGGAGTAAC 57.371 47.619 0.00 0.00 0.00 2.50
2700 4499 2.834113 ACATGCTAGTGGGGAGTAACT 58.166 47.619 0.00 0.00 0.00 2.24
2701 4500 3.182152 ACATGCTAGTGGGGAGTAACTT 58.818 45.455 0.00 0.00 0.00 2.66
2702 4501 4.359105 ACATGCTAGTGGGGAGTAACTTA 58.641 43.478 0.00 0.00 0.00 2.24
2703 4502 4.969359 ACATGCTAGTGGGGAGTAACTTAT 59.031 41.667 0.00 0.00 0.00 1.73
2704 4503 6.141083 ACATGCTAGTGGGGAGTAACTTATA 58.859 40.000 0.00 0.00 0.00 0.98
2705 4504 6.787957 ACATGCTAGTGGGGAGTAACTTATAT 59.212 38.462 0.00 0.00 0.00 0.86
2706 4505 6.665992 TGCTAGTGGGGAGTAACTTATATG 57.334 41.667 0.00 0.00 0.00 1.78
2707 4506 6.141083 TGCTAGTGGGGAGTAACTTATATGT 58.859 40.000 0.00 0.00 0.00 2.29
2708 4507 6.614087 TGCTAGTGGGGAGTAACTTATATGTT 59.386 38.462 8.83 8.83 0.00 2.71
2709 4508 7.785985 TGCTAGTGGGGAGTAACTTATATGTTA 59.214 37.037 7.03 7.03 0.00 2.41
2751 4550 9.310449 ACCTTCATAGTAGGTAGTAACATATGG 57.690 37.037 7.80 0.00 44.11 2.74
2752 4551 9.529823 CCTTCATAGTAGGTAGTAACATATGGA 57.470 37.037 7.80 0.00 0.00 3.41
2763 4562 8.883731 GGTAGTAACATATGGATGATAACATGC 58.116 37.037 7.80 0.00 43.51 4.06
2774 4573 8.694581 TGGATGATAACATGCATTAATTGAGA 57.305 30.769 2.97 0.00 46.72 3.27
2775 4574 9.304335 TGGATGATAACATGCATTAATTGAGAT 57.696 29.630 2.97 0.00 46.72 2.75
2795 4594 8.112016 TGAGATATAGACTCATTTTACCTCGG 57.888 38.462 7.91 0.00 39.10 4.63
2796 4595 7.176865 TGAGATATAGACTCATTTTACCTCGGG 59.823 40.741 7.91 0.00 39.10 5.14
2797 4596 4.957684 ATAGACTCATTTTACCTCGGGG 57.042 45.455 0.00 0.00 38.88 5.73
2799 4598 2.910977 AGACTCATTTTACCTCGGGGTT 59.089 45.455 15.04 0.00 44.73 4.11
2800 4599 4.098894 AGACTCATTTTACCTCGGGGTTA 58.901 43.478 15.04 0.00 44.73 2.85
2801 4600 4.081254 AGACTCATTTTACCTCGGGGTTAC 60.081 45.833 15.04 0.00 44.73 2.50
2802 4601 3.583966 ACTCATTTTACCTCGGGGTTACA 59.416 43.478 15.04 0.00 44.73 2.41
2803 4602 4.189231 CTCATTTTACCTCGGGGTTACAG 58.811 47.826 15.04 0.00 44.73 2.74
2804 4603 3.583966 TCATTTTACCTCGGGGTTACAGT 59.416 43.478 15.04 0.00 44.73 3.55
2805 4604 4.776837 TCATTTTACCTCGGGGTTACAGTA 59.223 41.667 15.04 0.00 44.73 2.74
2806 4605 5.248020 TCATTTTACCTCGGGGTTACAGTAA 59.752 40.000 15.04 0.00 44.73 2.24
2807 4606 4.535526 TTTACCTCGGGGTTACAGTAAC 57.464 45.455 15.04 14.30 44.73 2.50
2808 4607 2.014010 ACCTCGGGGTTACAGTAACA 57.986 50.000 22.34 3.82 44.73 2.41
2809 4608 2.543635 ACCTCGGGGTTACAGTAACAT 58.456 47.619 22.34 0.00 44.73 2.71
2810 4609 3.711863 ACCTCGGGGTTACAGTAACATA 58.288 45.455 22.34 6.08 44.73 2.29
2811 4610 4.292643 ACCTCGGGGTTACAGTAACATAT 58.707 43.478 22.34 0.99 44.73 1.78
2812 4611 4.718276 ACCTCGGGGTTACAGTAACATATT 59.282 41.667 22.34 0.33 44.73 1.28
2813 4612 5.898972 ACCTCGGGGTTACAGTAACATATTA 59.101 40.000 22.34 5.48 44.73 0.98
2814 4613 6.556116 ACCTCGGGGTTACAGTAACATATTAT 59.444 38.462 22.34 2.47 44.73 1.28
2815 4614 6.872020 CCTCGGGGTTACAGTAACATATTATG 59.128 42.308 22.34 2.03 40.39 1.90
2831 4630 8.383318 ACATATTATGTTACCACAAGCATCTC 57.617 34.615 3.40 0.00 41.63 2.75
2832 4631 8.213679 ACATATTATGTTACCACAAGCATCTCT 58.786 33.333 3.40 0.00 41.63 3.10
2833 4632 9.060347 CATATTATGTTACCACAAGCATCTCTT 57.940 33.333 0.00 0.00 36.16 2.85
2834 4633 7.944729 ATTATGTTACCACAAGCATCTCTTT 57.055 32.000 0.00 0.00 36.16 2.52
2835 4634 5.886960 ATGTTACCACAAGCATCTCTTTC 57.113 39.130 0.00 0.00 36.16 2.62
2836 4635 4.072131 TGTTACCACAAGCATCTCTTTCC 58.928 43.478 0.00 0.00 31.27 3.13
2837 4636 4.202461 TGTTACCACAAGCATCTCTTTCCT 60.202 41.667 0.00 0.00 31.27 3.36
2838 4637 3.064900 ACCACAAGCATCTCTTTCCTC 57.935 47.619 0.00 0.00 31.27 3.71
2839 4638 2.373169 ACCACAAGCATCTCTTTCCTCA 59.627 45.455 0.00 0.00 31.27 3.86
2840 4639 3.009916 ACCACAAGCATCTCTTTCCTCAT 59.990 43.478 0.00 0.00 31.27 2.90
2841 4640 4.015084 CCACAAGCATCTCTTTCCTCATT 58.985 43.478 0.00 0.00 31.27 2.57
2842 4641 5.188434 CCACAAGCATCTCTTTCCTCATTA 58.812 41.667 0.00 0.00 31.27 1.90
2843 4642 5.649395 CCACAAGCATCTCTTTCCTCATTAA 59.351 40.000 0.00 0.00 31.27 1.40
2844 4643 6.404074 CCACAAGCATCTCTTTCCTCATTAAC 60.404 42.308 0.00 0.00 31.27 2.01
2845 4644 6.373774 CACAAGCATCTCTTTCCTCATTAACT 59.626 38.462 0.00 0.00 31.27 2.24
2846 4645 6.597280 ACAAGCATCTCTTTCCTCATTAACTC 59.403 38.462 0.00 0.00 31.27 3.01
2847 4646 5.679601 AGCATCTCTTTCCTCATTAACTCC 58.320 41.667 0.00 0.00 0.00 3.85
2848 4647 5.190528 AGCATCTCTTTCCTCATTAACTCCA 59.809 40.000 0.00 0.00 0.00 3.86
2849 4648 6.060788 GCATCTCTTTCCTCATTAACTCCAT 58.939 40.000 0.00 0.00 0.00 3.41
2850 4649 6.017275 GCATCTCTTTCCTCATTAACTCCATG 60.017 42.308 0.00 0.00 0.00 3.66
2851 4650 5.431765 TCTCTTTCCTCATTAACTCCATGC 58.568 41.667 0.00 0.00 0.00 4.06
2852 4651 4.526970 TCTTTCCTCATTAACTCCATGCC 58.473 43.478 0.00 0.00 0.00 4.40
2853 4652 4.018506 TCTTTCCTCATTAACTCCATGCCA 60.019 41.667 0.00 0.00 0.00 4.92
2854 4653 4.524802 TTCCTCATTAACTCCATGCCAT 57.475 40.909 0.00 0.00 0.00 4.40
2855 4654 5.645056 TTCCTCATTAACTCCATGCCATA 57.355 39.130 0.00 0.00 0.00 2.74
2856 4655 5.848286 TCCTCATTAACTCCATGCCATAT 57.152 39.130 0.00 0.00 0.00 1.78
2857 4656 6.950860 TCCTCATTAACTCCATGCCATATA 57.049 37.500 0.00 0.00 0.00 0.86
2858 4657 7.328404 TCCTCATTAACTCCATGCCATATAA 57.672 36.000 0.00 0.00 0.00 0.98
2859 4658 7.397221 TCCTCATTAACTCCATGCCATATAAG 58.603 38.462 0.00 0.00 0.00 1.73
2860 4659 6.094603 CCTCATTAACTCCATGCCATATAAGC 59.905 42.308 0.00 0.00 0.00 3.09
2861 4660 6.541907 TCATTAACTCCATGCCATATAAGCA 58.458 36.000 3.54 3.54 45.94 3.91
2862 4661 7.003482 TCATTAACTCCATGCCATATAAGCAA 58.997 34.615 5.05 0.00 44.83 3.91
2863 4662 7.670979 TCATTAACTCCATGCCATATAAGCAAT 59.329 33.333 5.05 0.00 44.83 3.56
2864 4663 7.838079 TTAACTCCATGCCATATAAGCAATT 57.162 32.000 5.05 0.00 44.83 2.32
2865 4664 6.736110 AACTCCATGCCATATAAGCAATTT 57.264 33.333 5.05 0.00 44.83 1.82
2866 4665 6.736110 ACTCCATGCCATATAAGCAATTTT 57.264 33.333 5.05 0.00 44.83 1.82
2867 4666 7.128234 ACTCCATGCCATATAAGCAATTTTT 57.872 32.000 5.05 0.00 44.83 1.94
2890 4689 9.901172 TTTTTCTTGGGATATCTAAGTTACTCC 57.099 33.333 15.23 2.36 0.00 3.85
2891 4690 7.613551 TTCTTGGGATATCTAAGTTACTCCC 57.386 40.000 15.23 0.00 42.27 4.30
2897 4696 9.046846 TGGGATATCTAAGTTACTCCCATTATG 57.953 37.037 4.02 0.00 45.66 1.90
2898 4697 8.487028 GGGATATCTAAGTTACTCCCATTATGG 58.513 40.741 3.85 3.85 41.67 2.74
2899 4698 7.988028 GGATATCTAAGTTACTCCCATTATGGC 59.012 40.741 5.57 0.00 35.79 4.40
2900 4699 8.686739 ATATCTAAGTTACTCCCATTATGGCT 57.313 34.615 5.57 0.00 35.79 4.75
2901 4700 9.784376 ATATCTAAGTTACTCCCATTATGGCTA 57.216 33.333 5.57 0.00 35.79 3.93
2902 4701 7.540474 TCTAAGTTACTCCCATTATGGCTAG 57.460 40.000 5.57 7.90 35.79 3.42
2903 4702 4.625607 AGTTACTCCCATTATGGCTAGC 57.374 45.455 6.04 6.04 35.79 3.42
2904 4703 3.328050 AGTTACTCCCATTATGGCTAGCC 59.672 47.826 27.71 27.71 35.79 3.93
2905 4704 2.124560 ACTCCCATTATGGCTAGCCT 57.875 50.000 33.07 20.80 35.79 4.58
2906 4705 3.275848 ACTCCCATTATGGCTAGCCTA 57.724 47.619 33.07 20.21 35.79 3.93
2907 4706 3.598264 ACTCCCATTATGGCTAGCCTAA 58.402 45.455 33.07 25.90 35.79 2.69
2908 4707 3.328050 ACTCCCATTATGGCTAGCCTAAC 59.672 47.826 33.07 8.57 35.79 2.34
2909 4708 3.584848 CTCCCATTATGGCTAGCCTAACT 59.415 47.826 33.07 17.59 35.79 2.24
2910 4709 4.758822 TCCCATTATGGCTAGCCTAACTA 58.241 43.478 33.07 14.38 35.79 2.24
2911 4710 5.159637 TCCCATTATGGCTAGCCTAACTAA 58.840 41.667 33.07 22.93 35.79 2.24
2912 4711 5.609284 TCCCATTATGGCTAGCCTAACTAAA 59.391 40.000 33.07 17.67 35.79 1.85
2913 4712 6.102027 TCCCATTATGGCTAGCCTAACTAAAA 59.898 38.462 33.07 12.01 35.79 1.52
2914 4713 6.948309 CCCATTATGGCTAGCCTAACTAAAAT 59.052 38.462 33.07 18.20 35.79 1.82
2915 4714 7.094205 CCCATTATGGCTAGCCTAACTAAAATG 60.094 40.741 33.07 25.19 35.79 2.32
2916 4715 6.877611 TTATGGCTAGCCTAACTAAAATGC 57.122 37.500 33.07 3.56 36.94 3.56
2917 4716 3.551846 TGGCTAGCCTAACTAAAATGCC 58.448 45.455 33.07 4.03 38.41 4.40
2918 4717 3.053991 TGGCTAGCCTAACTAAAATGCCA 60.054 43.478 33.07 6.89 42.90 4.92
2919 4718 3.315470 GGCTAGCCTAACTAAAATGCCAC 59.685 47.826 27.17 0.00 38.03 5.01
2920 4719 3.945285 GCTAGCCTAACTAAAATGCCACA 59.055 43.478 2.29 0.00 0.00 4.17
2921 4720 4.580580 GCTAGCCTAACTAAAATGCCACAT 59.419 41.667 2.29 0.00 0.00 3.21
2922 4721 5.278022 GCTAGCCTAACTAAAATGCCACATC 60.278 44.000 2.29 0.00 0.00 3.06
2923 4722 4.860022 AGCCTAACTAAAATGCCACATCT 58.140 39.130 0.00 0.00 0.00 2.90
2924 4723 5.264395 AGCCTAACTAAAATGCCACATCTT 58.736 37.500 0.00 0.00 0.00 2.40
2925 4724 5.126061 AGCCTAACTAAAATGCCACATCTTG 59.874 40.000 0.00 0.00 0.00 3.02
2957 4773 4.866508 TCTCTCGGATACAAACAAGTGT 57.133 40.909 0.00 0.00 35.43 3.55
2959 4775 3.571571 TCTCGGATACAAACAAGTGTCG 58.428 45.455 0.00 0.00 31.24 4.35
2961 4777 3.311106 TCGGATACAAACAAGTGTCGTC 58.689 45.455 0.00 0.00 31.24 4.20
2963 4779 2.740447 GGATACAAACAAGTGTCGTCCC 59.260 50.000 0.00 0.00 33.47 4.46
2965 4781 2.116827 ACAAACAAGTGTCGTCCCAA 57.883 45.000 0.00 0.00 0.00 4.12
2971 4787 2.285083 CAAGTGTCGTCCCAAGAACAA 58.715 47.619 0.00 0.00 0.00 2.83
2979 4795 4.389077 GTCGTCCCAAGAACAAGACAATAG 59.611 45.833 0.00 0.00 0.00 1.73
3006 4826 9.162764 GTCTCTTTTATAACACAAGAATAGCCA 57.837 33.333 0.97 0.00 0.00 4.75
3048 4882 3.387962 AGAGATACATGGGGCAGAAGAA 58.612 45.455 0.00 0.00 0.00 2.52
3060 4894 3.057245 GGGCAGAAGAACCAACTTGAATC 60.057 47.826 0.00 0.00 0.00 2.52
3061 4895 3.365364 GGCAGAAGAACCAACTTGAATCG 60.365 47.826 0.00 0.00 0.00 3.34
3068 4902 1.270625 ACCAACTTGAATCGCGGAGAA 60.271 47.619 6.13 0.00 0.00 2.87
3069 4903 1.128692 CCAACTTGAATCGCGGAGAAC 59.871 52.381 6.13 0.00 0.00 3.01
3070 4904 1.798223 CAACTTGAATCGCGGAGAACA 59.202 47.619 6.13 0.00 0.00 3.18
3071 4905 1.714794 ACTTGAATCGCGGAGAACAG 58.285 50.000 6.13 0.00 0.00 3.16
3074 4908 1.179152 TGAATCGCGGAGAACAGGTA 58.821 50.000 6.13 0.00 0.00 3.08
3076 4910 0.179108 AATCGCGGAGAACAGGTAGC 60.179 55.000 6.13 0.00 0.00 3.58
3077 4911 1.038130 ATCGCGGAGAACAGGTAGCT 61.038 55.000 6.13 0.00 0.00 3.32
3078 4912 1.226717 CGCGGAGAACAGGTAGCTC 60.227 63.158 0.00 0.00 0.00 4.09
3083 4917 0.456628 GAGAACAGGTAGCTCCGGTC 59.543 60.000 0.00 0.00 43.46 4.79
3095 4929 1.810412 GCTCCGGTCTGTGAACTTGTT 60.810 52.381 0.00 0.00 0.00 2.83
3096 4930 1.867233 CTCCGGTCTGTGAACTTGTTG 59.133 52.381 0.00 0.00 0.00 3.33
3099 4933 2.878406 CCGGTCTGTGAACTTGTTGAAT 59.122 45.455 0.00 0.00 0.00 2.57
3101 4935 3.362986 CGGTCTGTGAACTTGTTGAATCG 60.363 47.826 0.00 0.00 0.00 3.34
3116 4950 2.413796 TGAATCGTTCAACCATACGTGC 59.586 45.455 0.00 0.00 38.79 5.34
3121 4955 2.732500 CGTTCAACCATACGTGCTGTAA 59.267 45.455 0.00 0.00 36.44 2.41
3126 4960 4.106909 CAACCATACGTGCTGTAATCGTA 58.893 43.478 0.00 0.00 42.60 3.43
3137 4971 4.046462 GCTGTAATCGTAGCCGTATTCAA 58.954 43.478 0.00 0.00 33.89 2.69
3139 4973 5.860182 GCTGTAATCGTAGCCGTATTCAATA 59.140 40.000 0.00 0.00 33.89 1.90
3144 4978 4.469552 TCGTAGCCGTATTCAATATGTCG 58.530 43.478 0.00 0.00 35.01 4.35
3148 4982 4.127171 AGCCGTATTCAATATGTCGCTTT 58.873 39.130 0.00 0.00 0.00 3.51
3157 4991 6.785488 TCAATATGTCGCTTTGTCATATCC 57.215 37.500 0.00 0.00 38.03 2.59
3164 4998 0.861837 CTTTGTCATATCCGCCTCGC 59.138 55.000 0.00 0.00 0.00 5.03
3167 5001 2.024319 GTCATATCCGCCTCGCTGC 61.024 63.158 0.00 0.00 0.00 5.25
3186 5020 1.682451 CGGGGGCGAGGACTGAAATA 61.682 60.000 0.00 0.00 0.00 1.40
3196 5030 5.411669 GCGAGGACTGAAATAAGAAAGGAAA 59.588 40.000 0.00 0.00 0.00 3.13
3197 5031 6.072673 GCGAGGACTGAAATAAGAAAGGAAAA 60.073 38.462 0.00 0.00 0.00 2.29
3198 5032 7.521585 GCGAGGACTGAAATAAGAAAGGAAAAA 60.522 37.037 0.00 0.00 0.00 1.94
3199 5033 8.515414 CGAGGACTGAAATAAGAAAGGAAAAAT 58.485 33.333 0.00 0.00 0.00 1.82
3209 5043 3.888930 AGAAAGGAAAAATGAGTTCGGCA 59.111 39.130 0.00 0.00 0.00 5.69
3211 5045 3.923017 AGGAAAAATGAGTTCGGCAAG 57.077 42.857 0.00 0.00 0.00 4.01
3278 5117 5.001232 TCAAACCTACCTTTATGTGAGCAC 58.999 41.667 0.00 0.00 0.00 4.40
3281 5120 3.583086 ACCTACCTTTATGTGAGCACTGT 59.417 43.478 1.99 0.00 0.00 3.55
3292 5132 1.235724 GAGCACTGTAACCACAACCC 58.764 55.000 0.00 0.00 33.22 4.11
3297 5137 3.761752 GCACTGTAACCACAACCCATATT 59.238 43.478 0.00 0.00 33.22 1.28
3298 5138 4.380444 GCACTGTAACCACAACCCATATTG 60.380 45.833 0.00 0.00 33.22 1.90
3299 5139 3.761752 ACTGTAACCACAACCCATATTGC 59.238 43.478 0.00 0.00 33.22 3.56
3331 5178 4.451900 AGCTTAATGTAAATGAGACGGGG 58.548 43.478 0.00 0.00 0.00 5.73
3366 5213 4.938226 GGGAAGAAGATGAACGTGAAGAAT 59.062 41.667 0.00 0.00 0.00 2.40
3376 5223 8.331022 AGATGAACGTGAAGAATATTGATTTCG 58.669 33.333 0.00 0.93 0.00 3.46
3394 5241 3.101643 TCGGAGAGGAGAAATGGAGAA 57.898 47.619 0.00 0.00 0.00 2.87
3395 5242 2.761208 TCGGAGAGGAGAAATGGAGAAC 59.239 50.000 0.00 0.00 0.00 3.01
3399 5246 4.263068 GGAGAGGAGAAATGGAGAACACAA 60.263 45.833 0.00 0.00 0.00 3.33
3402 5249 5.767168 AGAGGAGAAATGGAGAACACAAAAG 59.233 40.000 0.00 0.00 0.00 2.27
3404 5251 6.310149 AGGAGAAATGGAGAACACAAAAGAT 58.690 36.000 0.00 0.00 0.00 2.40
3406 5253 6.865205 GGAGAAATGGAGAACACAAAAGATTG 59.135 38.462 0.00 0.00 42.46 2.67
3407 5254 7.255590 GGAGAAATGGAGAACACAAAAGATTGA 60.256 37.037 0.00 0.00 38.94 2.57
3408 5255 8.186709 AGAAATGGAGAACACAAAAGATTGAT 57.813 30.769 0.00 0.00 38.94 2.57
3409 5256 9.300681 AGAAATGGAGAACACAAAAGATTGATA 57.699 29.630 0.00 0.00 38.94 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.202417 ACTAGATGGTCCGTCGCAATG 60.202 52.381 5.40 0.00 0.00 2.82
1 2 1.067212 GACTAGATGGTCCGTCGCAAT 59.933 52.381 5.40 0.00 0.00 3.56
2 3 0.454600 GACTAGATGGTCCGTCGCAA 59.545 55.000 5.40 0.00 0.00 4.85
3 4 0.678684 TGACTAGATGGTCCGTCGCA 60.679 55.000 5.40 0.93 35.54 5.10
4 5 0.669077 ATGACTAGATGGTCCGTCGC 59.331 55.000 5.40 0.00 35.54 5.19
5 6 3.751698 TGATATGACTAGATGGTCCGTCG 59.248 47.826 5.40 0.00 35.54 5.12
6 7 5.906113 ATGATATGACTAGATGGTCCGTC 57.094 43.478 2.48 2.48 35.54 4.79
7 8 6.267699 TCAAATGATATGACTAGATGGTCCGT 59.732 38.462 0.00 0.00 35.54 4.69
8 9 6.691508 TCAAATGATATGACTAGATGGTCCG 58.308 40.000 0.00 0.00 35.54 4.79
9 10 7.102346 CCTCAAATGATATGACTAGATGGTCC 58.898 42.308 0.00 0.00 35.54 4.46
10 11 6.593382 GCCTCAAATGATATGACTAGATGGTC 59.407 42.308 0.00 0.00 36.81 4.02
11 12 6.471146 GCCTCAAATGATATGACTAGATGGT 58.529 40.000 0.00 0.00 0.00 3.55
12 13 5.879223 GGCCTCAAATGATATGACTAGATGG 59.121 44.000 0.00 0.00 0.00 3.51
13 14 6.470278 TGGCCTCAAATGATATGACTAGATG 58.530 40.000 3.32 0.00 0.00 2.90
14 15 6.499699 TCTGGCCTCAAATGATATGACTAGAT 59.500 38.462 3.32 0.00 0.00 1.98
15 16 5.840693 TCTGGCCTCAAATGATATGACTAGA 59.159 40.000 3.32 0.00 0.00 2.43
16 17 6.106648 TCTGGCCTCAAATGATATGACTAG 57.893 41.667 3.32 0.00 0.00 2.57
17 18 5.604231 ACTCTGGCCTCAAATGATATGACTA 59.396 40.000 3.32 0.00 0.00 2.59
18 19 4.411540 ACTCTGGCCTCAAATGATATGACT 59.588 41.667 3.32 0.00 0.00 3.41
19 20 4.712476 ACTCTGGCCTCAAATGATATGAC 58.288 43.478 3.32 0.00 0.00 3.06
20 21 5.221722 GGTACTCTGGCCTCAAATGATATGA 60.222 44.000 3.32 0.00 0.00 2.15
21 22 4.999950 GGTACTCTGGCCTCAAATGATATG 59.000 45.833 3.32 0.00 0.00 1.78
22 23 4.042187 GGGTACTCTGGCCTCAAATGATAT 59.958 45.833 3.32 0.00 0.00 1.63
23 24 3.391296 GGGTACTCTGGCCTCAAATGATA 59.609 47.826 3.32 0.00 0.00 2.15
24 25 2.173569 GGGTACTCTGGCCTCAAATGAT 59.826 50.000 3.32 0.00 0.00 2.45
25 26 1.559682 GGGTACTCTGGCCTCAAATGA 59.440 52.381 3.32 0.00 0.00 2.57
26 27 1.408822 GGGGTACTCTGGCCTCAAATG 60.409 57.143 3.32 0.00 0.00 2.32
27 28 0.919710 GGGGTACTCTGGCCTCAAAT 59.080 55.000 3.32 0.00 0.00 2.32
28 29 0.178873 AGGGGTACTCTGGCCTCAAA 60.179 55.000 3.32 0.00 0.00 2.69
29 30 0.178873 AAGGGGTACTCTGGCCTCAA 60.179 55.000 3.32 0.00 0.00 3.02
30 31 0.617820 GAAGGGGTACTCTGGCCTCA 60.618 60.000 3.32 0.00 0.00 3.86
31 32 1.677637 CGAAGGGGTACTCTGGCCTC 61.678 65.000 3.32 0.00 0.00 4.70
32 33 1.686110 CGAAGGGGTACTCTGGCCT 60.686 63.158 3.32 0.00 0.00 5.19
33 34 2.901042 CGAAGGGGTACTCTGGCC 59.099 66.667 0.00 0.00 0.00 5.36
34 35 2.187163 GCGAAGGGGTACTCTGGC 59.813 66.667 0.00 0.00 0.00 4.85
35 36 1.677637 GGAGCGAAGGGGTACTCTGG 61.678 65.000 0.00 0.00 0.00 3.86
36 37 1.677637 GGGAGCGAAGGGGTACTCTG 61.678 65.000 0.00 0.00 0.00 3.35
37 38 1.381463 GGGAGCGAAGGGGTACTCT 60.381 63.158 0.00 0.00 0.00 3.24
38 39 2.433146 GGGGAGCGAAGGGGTACTC 61.433 68.421 0.00 0.00 0.00 2.59
39 40 2.365237 GGGGAGCGAAGGGGTACT 60.365 66.667 0.00 0.00 0.00 2.73
40 41 2.365237 AGGGGAGCGAAGGGGTAC 60.365 66.667 0.00 0.00 0.00 3.34
41 42 2.042230 GAGGGGAGCGAAGGGGTA 60.042 66.667 0.00 0.00 0.00 3.69
50 51 3.418744 GAGTTCTCGCGAGGGGAGC 62.419 68.421 33.98 18.21 41.46 4.70
51 52 1.316706 AAGAGTTCTCGCGAGGGGAG 61.317 60.000 33.98 11.29 42.76 4.30
52 53 0.034767 TAAGAGTTCTCGCGAGGGGA 60.035 55.000 33.98 18.43 0.00 4.81
53 54 1.001158 GATAAGAGTTCTCGCGAGGGG 60.001 57.143 33.98 12.11 0.00 4.79
54 55 1.950909 AGATAAGAGTTCTCGCGAGGG 59.049 52.381 33.98 12.92 0.00 4.30
55 56 3.364565 GCTAGATAAGAGTTCTCGCGAGG 60.365 52.174 33.98 16.82 0.00 4.63
56 57 3.496884 AGCTAGATAAGAGTTCTCGCGAG 59.503 47.826 30.03 30.03 37.09 5.03
57 58 3.468770 AGCTAGATAAGAGTTCTCGCGA 58.531 45.455 9.26 9.26 37.09 5.87
58 59 3.889196 AGCTAGATAAGAGTTCTCGCG 57.111 47.619 0.00 0.00 37.09 5.87
59 60 4.155280 CCCTAGCTAGATAAGAGTTCTCGC 59.845 50.000 22.70 0.00 33.41 5.03
60 61 5.310451 ACCCTAGCTAGATAAGAGTTCTCG 58.690 45.833 22.70 0.23 0.00 4.04
61 62 7.504574 AGAAACCCTAGCTAGATAAGAGTTCTC 59.495 40.741 22.70 12.99 0.00 2.87
62 63 7.359056 AGAAACCCTAGCTAGATAAGAGTTCT 58.641 38.462 22.70 15.31 0.00 3.01
63 64 7.504574 AGAGAAACCCTAGCTAGATAAGAGTTC 59.495 40.741 22.70 13.60 0.00 3.01
64 65 7.286775 CAGAGAAACCCTAGCTAGATAAGAGTT 59.713 40.741 22.70 11.65 0.00 3.01
65 66 6.775629 CAGAGAAACCCTAGCTAGATAAGAGT 59.224 42.308 22.70 6.52 0.00 3.24
66 67 6.775629 ACAGAGAAACCCTAGCTAGATAAGAG 59.224 42.308 22.70 3.92 0.00 2.85
67 68 6.674573 ACAGAGAAACCCTAGCTAGATAAGA 58.325 40.000 22.70 0.00 0.00 2.10
68 69 6.775629 AGACAGAGAAACCCTAGCTAGATAAG 59.224 42.308 22.70 9.97 0.00 1.73
69 70 6.674573 AGACAGAGAAACCCTAGCTAGATAA 58.325 40.000 22.70 0.00 0.00 1.75
70 71 6.268855 AGACAGAGAAACCCTAGCTAGATA 57.731 41.667 22.70 0.00 0.00 1.98
71 72 5.137412 AGACAGAGAAACCCTAGCTAGAT 57.863 43.478 22.70 6.99 0.00 1.98
72 73 4.594675 AGACAGAGAAACCCTAGCTAGA 57.405 45.455 22.70 0.00 0.00 2.43
73 74 5.656480 GAAAGACAGAGAAACCCTAGCTAG 58.344 45.833 14.20 14.20 0.00 3.42
74 75 4.158025 CGAAAGACAGAGAAACCCTAGCTA 59.842 45.833 0.00 0.00 0.00 3.32
75 76 3.056465 CGAAAGACAGAGAAACCCTAGCT 60.056 47.826 0.00 0.00 0.00 3.32
76 77 3.254892 CGAAAGACAGAGAAACCCTAGC 58.745 50.000 0.00 0.00 0.00 3.42
77 78 3.254892 GCGAAAGACAGAGAAACCCTAG 58.745 50.000 0.00 0.00 0.00 3.02
78 79 2.028385 GGCGAAAGACAGAGAAACCCTA 60.028 50.000 0.00 0.00 40.66 3.53
79 80 1.270893 GGCGAAAGACAGAGAAACCCT 60.271 52.381 0.00 0.00 40.66 4.34
80 81 1.157585 GGCGAAAGACAGAGAAACCC 58.842 55.000 0.00 0.00 40.66 4.11
90 91 0.040958 CAGCAACACTGGCGAAAGAC 60.041 55.000 0.00 0.00 43.19 3.01
91 92 2.320215 CAGCAACACTGGCGAAAGA 58.680 52.632 0.00 0.00 43.19 2.52
92 93 4.929198 CAGCAACACTGGCGAAAG 57.071 55.556 0.00 0.00 43.19 2.62
99 100 3.357079 GGCGGACCAGCAACACTG 61.357 66.667 9.90 0.00 46.77 3.66
100 101 3.537206 GAGGCGGACCAGCAACACT 62.537 63.158 9.90 0.00 39.06 3.55
101 102 3.050275 GAGGCGGACCAGCAACAC 61.050 66.667 9.90 0.00 39.06 3.32
102 103 4.680237 CGAGGCGGACCAGCAACA 62.680 66.667 9.90 0.00 39.06 3.33
129 130 2.319890 TAAAATCGGAGCCCTCCCGC 62.320 60.000 8.68 0.00 46.96 6.13
130 131 0.249911 CTAAAATCGGAGCCCTCCCG 60.250 60.000 8.68 0.00 46.96 5.14
131 132 0.837940 ACTAAAATCGGAGCCCTCCC 59.162 55.000 8.68 0.00 46.96 4.30
132 133 2.289565 CAACTAAAATCGGAGCCCTCC 58.710 52.381 4.19 4.19 46.18 4.30
133 134 2.678336 CACAACTAAAATCGGAGCCCTC 59.322 50.000 0.00 0.00 0.00 4.30
134 135 2.711542 CACAACTAAAATCGGAGCCCT 58.288 47.619 0.00 0.00 0.00 5.19
135 136 1.132453 GCACAACTAAAATCGGAGCCC 59.868 52.381 0.00 0.00 0.00 5.19
136 137 1.132453 GGCACAACTAAAATCGGAGCC 59.868 52.381 0.00 0.00 0.00 4.70
137 138 1.810151 TGGCACAACTAAAATCGGAGC 59.190 47.619 0.00 0.00 31.92 4.70
192 194 2.330216 CGGGGAGGACCTCATTCTATT 58.670 52.381 23.06 0.00 40.03 1.73
200 202 3.787001 CTTGGCGGGGAGGACCTC 61.787 72.222 13.60 13.60 40.03 3.85
299 302 2.139917 CGGATCCAACGAAGACAAACA 58.860 47.619 13.41 0.00 0.00 2.83
326 329 3.346631 TAGGCGAACGAAGACCGGC 62.347 63.158 0.00 0.00 46.23 6.13
376 387 0.736325 ACCGCCGTCGATGAAAAGAG 60.736 55.000 6.11 0.00 38.10 2.85
388 399 2.978010 CCAGAAAGCAACCGCCGT 60.978 61.111 0.00 0.00 39.83 5.68
416 428 1.134521 CGTGGTGCTAAGGCCTCATAA 60.135 52.381 5.23 0.00 37.74 1.90
440 479 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
459 498 3.369147 GTCGGAGTCAGACAATGTCATTG 59.631 47.826 21.55 21.55 45.59 2.82
460 499 3.006859 TGTCGGAGTCAGACAATGTCATT 59.993 43.478 21.69 0.00 44.56 2.57
461 500 2.562738 TGTCGGAGTCAGACAATGTCAT 59.437 45.455 21.69 0.00 44.56 3.06
462 501 1.960689 TGTCGGAGTCAGACAATGTCA 59.039 47.619 21.69 0.00 44.56 3.58
463 502 2.724977 TGTCGGAGTCAGACAATGTC 57.275 50.000 21.69 5.02 44.56 3.06
468 507 0.178973 TCCCTTGTCGGAGTCAGACA 60.179 55.000 20.36 20.36 45.68 3.41
469 508 0.528470 CTCCCTTGTCGGAGTCAGAC 59.472 60.000 15.59 15.59 43.94 3.51
470 509 2.962882 CTCCCTTGTCGGAGTCAGA 58.037 57.895 0.00 0.00 43.94 3.27
476 515 2.471084 ATCACCCCTCCCTTGTCGGA 62.471 60.000 0.00 0.00 33.16 4.55
482 521 1.995626 CCGTCATCACCCCTCCCTT 60.996 63.158 0.00 0.00 0.00 3.95
527 566 4.595781 AGACCACCTACCAATGACTACAAA 59.404 41.667 0.00 0.00 0.00 2.83
580 619 9.488124 GTGTCTAAGATAGTAGTACAAAGAACG 57.512 37.037 2.52 0.00 0.00 3.95
688 727 6.147164 TGTTTTACCAAATCAGTCGATCTCAC 59.853 38.462 0.00 0.00 0.00 3.51
692 731 6.721571 TCTGTTTTACCAAATCAGTCGATC 57.278 37.500 8.70 0.00 38.64 3.69
717 756 7.644945 CAGATACATACACGTGTTTATTACCGA 59.355 37.037 28.55 5.36 33.62 4.69
718 757 7.566328 GCAGATACATACACGTGTTTATTACCG 60.566 40.741 28.55 11.47 33.62 4.02
719 758 7.223193 TGCAGATACATACACGTGTTTATTACC 59.777 37.037 28.55 10.98 33.62 2.85
720 759 8.122306 TGCAGATACATACACGTGTTTATTAC 57.878 34.615 28.55 14.36 33.62 1.89
721 760 8.192110 TCTGCAGATACATACACGTGTTTATTA 58.808 33.333 28.55 13.43 33.62 0.98
722 761 7.039270 TCTGCAGATACATACACGTGTTTATT 58.961 34.615 28.55 11.64 33.62 1.40
723 762 6.569780 TCTGCAGATACATACACGTGTTTAT 58.430 36.000 28.55 19.60 33.62 1.40
724 763 5.956642 TCTGCAGATACATACACGTGTTTA 58.043 37.500 28.55 15.78 33.62 2.01
725 764 4.816392 TCTGCAGATACATACACGTGTTT 58.184 39.130 28.55 16.98 33.62 2.83
726 765 4.450082 TCTGCAGATACATACACGTGTT 57.550 40.909 28.55 11.88 33.62 3.32
727 766 4.655762 ATCTGCAGATACATACACGTGT 57.344 40.909 27.73 26.52 36.13 4.49
728 767 6.381801 TGATATCTGCAGATACATACACGTG 58.618 40.000 33.31 15.48 39.57 4.49
729 768 6.575162 TGATATCTGCAGATACATACACGT 57.425 37.500 33.31 18.11 39.57 4.49
730 769 7.008992 CACATGATATCTGCAGATACATACACG 59.991 40.741 33.31 24.05 39.57 4.49
731 770 7.816513 ACACATGATATCTGCAGATACATACAC 59.183 37.037 33.31 20.68 39.57 2.90
828 1152 2.203625 CTGGGGGTTGGTGGTTGG 60.204 66.667 0.00 0.00 0.00 3.77
832 1156 2.115266 GTGACTGGGGGTTGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
855 1179 4.215109 CCTGGGGTGGGTAAATTAATGAG 58.785 47.826 0.00 0.00 0.00 2.90
857 1181 3.304829 CCCTGGGGTGGGTAAATTAATG 58.695 50.000 4.27 0.00 42.25 1.90
898 1223 8.235226 CGGACAGTATATACGTAGATCACAAAT 58.765 37.037 5.87 0.00 0.00 2.32
905 1230 3.944015 GGCCGGACAGTATATACGTAGAT 59.056 47.826 5.05 7.96 0.00 1.98
906 1231 3.008375 AGGCCGGACAGTATATACGTAGA 59.992 47.826 11.69 0.00 0.00 2.59
907 1232 3.126514 CAGGCCGGACAGTATATACGTAG 59.873 52.174 11.69 4.67 0.00 3.51
908 1233 3.076621 CAGGCCGGACAGTATATACGTA 58.923 50.000 11.69 0.00 0.00 3.57
909 1234 1.884579 CAGGCCGGACAGTATATACGT 59.115 52.381 11.69 8.36 0.00 3.57
910 1235 1.402456 GCAGGCCGGACAGTATATACG 60.402 57.143 11.69 5.40 0.00 3.06
911 1236 1.616865 TGCAGGCCGGACAGTATATAC 59.383 52.381 11.69 4.60 0.00 1.47
912 1237 1.893137 CTGCAGGCCGGACAGTATATA 59.107 52.381 11.69 0.00 0.00 0.86
915 1240 2.903357 CTGCAGGCCGGACAGTAT 59.097 61.111 11.69 0.00 0.00 2.12
918 1243 3.774528 TAGCTGCAGGCCGGACAG 61.775 66.667 11.69 18.15 43.05 3.51
952 1277 0.952010 ATTTGGTCCGTGGTGCGTAC 60.952 55.000 0.00 0.00 39.32 3.67
953 1278 0.671163 GATTTGGTCCGTGGTGCGTA 60.671 55.000 0.00 0.00 39.32 4.42
954 1279 1.964373 GATTTGGTCCGTGGTGCGT 60.964 57.895 0.00 0.00 39.32 5.24
955 1280 1.234615 AAGATTTGGTCCGTGGTGCG 61.235 55.000 0.00 0.00 40.95 5.34
957 1282 2.884639 AGAAAAGATTTGGTCCGTGGTG 59.115 45.455 0.00 0.00 0.00 4.17
960 1285 5.163652 GGGATAAGAAAAGATTTGGTCCGTG 60.164 44.000 0.00 0.00 0.00 4.94
1125 1477 4.143740 CTGTGGAAGAGGAGGCCT 57.856 61.111 3.86 3.86 36.03 5.19
1239 1618 0.317160 CGTCCCTGTGTTGCTCTGTA 59.683 55.000 0.00 0.00 0.00 2.74
1242 1621 1.668294 CTCGTCCCTGTGTTGCTCT 59.332 57.895 0.00 0.00 0.00 4.09
1248 1627 2.421739 GTGTGCTCGTCCCTGTGT 59.578 61.111 0.00 0.00 0.00 3.72
2169 2624 1.742900 CGCAGCCGTACATGTCGAAG 61.743 60.000 16.06 8.51 0.00 3.79
2390 2845 4.082523 TGGCCTTCTTCTCCGGCG 62.083 66.667 3.32 0.00 44.68 6.46
2426 3771 2.607187 CAGAGGTACGGTGTTGACATC 58.393 52.381 0.00 0.00 0.00 3.06
2447 3792 3.190118 GCACCAACCAGAATCAAGAAGAG 59.810 47.826 0.00 0.00 0.00 2.85
2453 4247 0.109532 TCGGCACCAACCAGAATCAA 59.890 50.000 0.00 0.00 0.00 2.57
2488 4282 3.121113 CACGAACAAAATGAAAATCGGCC 59.879 43.478 0.00 0.00 34.81 6.13
2523 4322 9.350357 GAATTAGACAATGCATATTGCTATTGG 57.650 33.333 19.22 9.05 46.05 3.16
2527 4326 8.570488 CCAAGAATTAGACAATGCATATTGCTA 58.430 33.333 0.00 0.27 46.05 3.49
2533 4332 7.122501 TCAAAGCCAAGAATTAGACAATGCATA 59.877 33.333 0.00 0.00 0.00 3.14
2538 4337 8.031277 GTCATTCAAAGCCAAGAATTAGACAAT 58.969 33.333 0.00 0.00 32.43 2.71
2539 4338 7.014134 TGTCATTCAAAGCCAAGAATTAGACAA 59.986 33.333 10.59 1.18 35.77 3.18
2540 4339 6.489700 TGTCATTCAAAGCCAAGAATTAGACA 59.510 34.615 9.64 9.64 36.06 3.41
2541 4340 6.913170 TGTCATTCAAAGCCAAGAATTAGAC 58.087 36.000 0.00 0.00 32.43 2.59
2576 4375 9.654417 CAAATTTCTTTTCACAAATCCAACATC 57.346 29.630 0.00 0.00 0.00 3.06
2577 4376 8.130469 GCAAATTTCTTTTCACAAATCCAACAT 58.870 29.630 0.00 0.00 0.00 2.71
2578 4377 7.336427 AGCAAATTTCTTTTCACAAATCCAACA 59.664 29.630 0.00 0.00 0.00 3.33
2579 4378 7.696755 AGCAAATTTCTTTTCACAAATCCAAC 58.303 30.769 0.00 0.00 0.00 3.77
2580 4379 7.769970 AGAGCAAATTTCTTTTCACAAATCCAA 59.230 29.630 0.00 0.00 0.00 3.53
2581 4380 7.225145 CAGAGCAAATTTCTTTTCACAAATCCA 59.775 33.333 0.00 0.00 0.00 3.41
2582 4381 7.439056 TCAGAGCAAATTTCTTTTCACAAATCC 59.561 33.333 0.00 0.00 0.00 3.01
2583 4382 8.356533 TCAGAGCAAATTTCTTTTCACAAATC 57.643 30.769 0.00 0.00 0.00 2.17
2584 4383 8.897872 ATCAGAGCAAATTTCTTTTCACAAAT 57.102 26.923 0.00 0.00 0.00 2.32
2585 4384 8.721019 AATCAGAGCAAATTTCTTTTCACAAA 57.279 26.923 0.00 0.00 0.00 2.83
2586 4385 8.605746 CAAATCAGAGCAAATTTCTTTTCACAA 58.394 29.630 0.00 0.00 0.00 3.33
2587 4386 7.980662 TCAAATCAGAGCAAATTTCTTTTCACA 59.019 29.630 0.00 0.00 0.00 3.58
2588 4387 8.356533 TCAAATCAGAGCAAATTTCTTTTCAC 57.643 30.769 0.00 0.00 0.00 3.18
2589 4388 8.945481 TTCAAATCAGAGCAAATTTCTTTTCA 57.055 26.923 0.00 0.00 0.00 2.69
2632 4431 3.705043 AATCAAATCCATGCTTCTCGC 57.295 42.857 0.00 0.00 39.77 5.03
2633 4432 5.032863 GTCAAATCAAATCCATGCTTCTCG 58.967 41.667 0.00 0.00 0.00 4.04
2634 4433 6.034591 CAGTCAAATCAAATCCATGCTTCTC 58.965 40.000 0.00 0.00 0.00 2.87
2635 4434 5.713389 TCAGTCAAATCAAATCCATGCTTCT 59.287 36.000 0.00 0.00 0.00 2.85
2636 4435 5.957798 TCAGTCAAATCAAATCCATGCTTC 58.042 37.500 0.00 0.00 0.00 3.86
2637 4436 5.105473 CCTCAGTCAAATCAAATCCATGCTT 60.105 40.000 0.00 0.00 0.00 3.91
2638 4437 4.401519 CCTCAGTCAAATCAAATCCATGCT 59.598 41.667 0.00 0.00 0.00 3.79
2639 4438 4.679662 CCTCAGTCAAATCAAATCCATGC 58.320 43.478 0.00 0.00 0.00 4.06
2640 4439 4.401519 AGCCTCAGTCAAATCAAATCCATG 59.598 41.667 0.00 0.00 0.00 3.66
2641 4440 4.607239 AGCCTCAGTCAAATCAAATCCAT 58.393 39.130 0.00 0.00 0.00 3.41
2642 4441 4.038271 AGCCTCAGTCAAATCAAATCCA 57.962 40.909 0.00 0.00 0.00 3.41
2643 4442 4.704057 AGAAGCCTCAGTCAAATCAAATCC 59.296 41.667 0.00 0.00 0.00 3.01
2644 4443 5.893897 AGAAGCCTCAGTCAAATCAAATC 57.106 39.130 0.00 0.00 0.00 2.17
2645 4444 6.294955 GGAAAGAAGCCTCAGTCAAATCAAAT 60.295 38.462 0.00 0.00 0.00 2.32
2646 4445 5.010012 GGAAAGAAGCCTCAGTCAAATCAAA 59.990 40.000 0.00 0.00 0.00 2.69
2647 4446 4.520492 GGAAAGAAGCCTCAGTCAAATCAA 59.480 41.667 0.00 0.00 0.00 2.57
2648 4447 4.074970 GGAAAGAAGCCTCAGTCAAATCA 58.925 43.478 0.00 0.00 0.00 2.57
2649 4448 4.331108 AGGAAAGAAGCCTCAGTCAAATC 58.669 43.478 0.00 0.00 0.00 2.17
2650 4449 4.379302 AGGAAAGAAGCCTCAGTCAAAT 57.621 40.909 0.00 0.00 0.00 2.32
2651 4450 3.864789 AGGAAAGAAGCCTCAGTCAAA 57.135 42.857 0.00 0.00 0.00 2.69
2652 4451 3.496870 GGAAGGAAAGAAGCCTCAGTCAA 60.497 47.826 0.00 0.00 33.76 3.18
2653 4452 2.039084 GGAAGGAAAGAAGCCTCAGTCA 59.961 50.000 0.00 0.00 33.76 3.41
2654 4453 2.616765 GGGAAGGAAAGAAGCCTCAGTC 60.617 54.545 0.00 0.00 33.76 3.51
2655 4454 1.352687 GGGAAGGAAAGAAGCCTCAGT 59.647 52.381 0.00 0.00 33.76 3.41
2656 4455 1.340502 GGGGAAGGAAAGAAGCCTCAG 60.341 57.143 0.00 0.00 33.76 3.35
2657 4456 0.698818 GGGGAAGGAAAGAAGCCTCA 59.301 55.000 0.00 0.00 33.76 3.86
2666 4465 2.000048 AGCATGTTAGGGGGAAGGAAA 59.000 47.619 0.00 0.00 0.00 3.13
2670 4469 2.158755 CCACTAGCATGTTAGGGGGAAG 60.159 54.545 26.02 4.45 40.02 3.46
2676 4475 2.119495 ACTCCCCACTAGCATGTTAGG 58.881 52.381 19.30 9.17 0.00 2.69
2679 4478 3.182152 AGTTACTCCCCACTAGCATGTT 58.818 45.455 0.00 0.00 0.00 2.71
2680 4479 2.834113 AGTTACTCCCCACTAGCATGT 58.166 47.619 0.00 0.00 0.00 3.21
2681 4480 3.914426 AAGTTACTCCCCACTAGCATG 57.086 47.619 0.00 0.00 0.00 4.06
2682 4481 6.787957 ACATATAAGTTACTCCCCACTAGCAT 59.212 38.462 0.00 0.00 0.00 3.79
2683 4482 6.141083 ACATATAAGTTACTCCCCACTAGCA 58.859 40.000 0.00 0.00 0.00 3.49
2684 4483 6.667558 ACATATAAGTTACTCCCCACTAGC 57.332 41.667 0.00 0.00 0.00 3.42
2726 4525 9.529823 TCCATATGTTACTACCTACTATGAAGG 57.470 37.037 1.24 0.00 40.20 3.46
2737 4536 8.883731 GCATGTTATCATCCATATGTTACTACC 58.116 37.037 1.24 0.00 34.50 3.18
2738 4537 9.435688 TGCATGTTATCATCCATATGTTACTAC 57.564 33.333 1.24 0.00 34.50 2.73
2740 4539 9.524496 AATGCATGTTATCATCCATATGTTACT 57.476 29.630 0.00 0.00 31.96 2.24
2748 4547 9.304335 TCTCAATTAATGCATGTTATCATCCAT 57.696 29.630 0.00 0.00 34.30 3.41
2749 4548 8.694581 TCTCAATTAATGCATGTTATCATCCA 57.305 30.769 0.00 0.00 31.15 3.41
2769 4568 8.577296 CCGAGGTAAAATGAGTCTATATCTCAA 58.423 37.037 10.42 0.00 43.65 3.02
2770 4569 7.176865 CCCGAGGTAAAATGAGTCTATATCTCA 59.823 40.741 9.26 9.26 44.37 3.27
2771 4570 7.363094 CCCCGAGGTAAAATGAGTCTATATCTC 60.363 44.444 0.00 0.00 0.00 2.75
2772 4571 6.437793 CCCCGAGGTAAAATGAGTCTATATCT 59.562 42.308 0.00 0.00 0.00 1.98
2773 4572 6.631962 CCCCGAGGTAAAATGAGTCTATATC 58.368 44.000 0.00 0.00 0.00 1.63
2774 4573 6.607004 CCCCGAGGTAAAATGAGTCTATAT 57.393 41.667 0.00 0.00 0.00 0.86
2776 4575 4.957684 CCCCGAGGTAAAATGAGTCTAT 57.042 45.455 0.00 0.00 0.00 1.98
2790 4589 4.950205 ATATGTTACTGTAACCCCGAGG 57.050 45.455 23.71 0.00 37.88 4.63
2791 4590 7.439381 ACATAATATGTTACTGTAACCCCGAG 58.561 38.462 23.71 12.34 41.63 4.63
2792 4591 7.364149 ACATAATATGTTACTGTAACCCCGA 57.636 36.000 23.71 9.09 41.63 5.14
2811 4610 6.374333 GGAAAGAGATGCTTGTGGTAACATAA 59.626 38.462 0.00 0.00 46.24 1.90
2812 4611 5.880332 GGAAAGAGATGCTTGTGGTAACATA 59.120 40.000 0.00 0.00 42.99 2.29
2813 4612 4.702131 GGAAAGAGATGCTTGTGGTAACAT 59.298 41.667 0.00 0.00 42.99 2.71
2814 4613 4.072131 GGAAAGAGATGCTTGTGGTAACA 58.928 43.478 0.00 0.00 40.32 2.41
2815 4614 4.327680 AGGAAAGAGATGCTTGTGGTAAC 58.672 43.478 0.00 0.00 36.80 2.50
2816 4615 4.041567 TGAGGAAAGAGATGCTTGTGGTAA 59.958 41.667 0.00 0.00 36.80 2.85
2817 4616 3.582647 TGAGGAAAGAGATGCTTGTGGTA 59.417 43.478 0.00 0.00 36.80 3.25
2818 4617 2.373169 TGAGGAAAGAGATGCTTGTGGT 59.627 45.455 0.00 0.00 36.80 4.16
2819 4618 3.063510 TGAGGAAAGAGATGCTTGTGG 57.936 47.619 0.00 0.00 36.80 4.17
2820 4619 6.373774 AGTTAATGAGGAAAGAGATGCTTGTG 59.626 38.462 0.00 0.00 36.80 3.33
2821 4620 6.479884 AGTTAATGAGGAAAGAGATGCTTGT 58.520 36.000 0.00 0.00 36.80 3.16
2822 4621 6.038050 GGAGTTAATGAGGAAAGAGATGCTTG 59.962 42.308 0.00 0.00 36.80 4.01
2823 4622 6.118852 GGAGTTAATGAGGAAAGAGATGCTT 58.881 40.000 0.00 0.00 38.88 3.91
2824 4623 5.190528 TGGAGTTAATGAGGAAAGAGATGCT 59.809 40.000 0.00 0.00 0.00 3.79
2825 4624 5.431765 TGGAGTTAATGAGGAAAGAGATGC 58.568 41.667 0.00 0.00 0.00 3.91
2826 4625 6.017275 GCATGGAGTTAATGAGGAAAGAGATG 60.017 42.308 0.00 0.00 0.00 2.90
2827 4626 6.060788 GCATGGAGTTAATGAGGAAAGAGAT 58.939 40.000 0.00 0.00 0.00 2.75
2828 4627 5.431765 GCATGGAGTTAATGAGGAAAGAGA 58.568 41.667 0.00 0.00 0.00 3.10
2829 4628 4.578105 GGCATGGAGTTAATGAGGAAAGAG 59.422 45.833 0.00 0.00 0.00 2.85
2830 4629 4.018506 TGGCATGGAGTTAATGAGGAAAGA 60.019 41.667 0.00 0.00 0.00 2.52
2831 4630 4.272489 TGGCATGGAGTTAATGAGGAAAG 58.728 43.478 0.00 0.00 0.00 2.62
2832 4631 4.314522 TGGCATGGAGTTAATGAGGAAA 57.685 40.909 0.00 0.00 0.00 3.13
2833 4632 4.524802 ATGGCATGGAGTTAATGAGGAA 57.475 40.909 0.00 0.00 0.00 3.36
2834 4633 5.848286 ATATGGCATGGAGTTAATGAGGA 57.152 39.130 10.98 0.00 0.00 3.71
2835 4634 6.094603 GCTTATATGGCATGGAGTTAATGAGG 59.905 42.308 10.98 0.00 0.00 3.86
2836 4635 6.656270 TGCTTATATGGCATGGAGTTAATGAG 59.344 38.462 10.98 1.07 34.56 2.90
2837 4636 6.541907 TGCTTATATGGCATGGAGTTAATGA 58.458 36.000 10.98 0.00 34.56 2.57
2838 4637 6.822667 TGCTTATATGGCATGGAGTTAATG 57.177 37.500 10.98 0.00 34.56 1.90
2839 4638 8.426569 AATTGCTTATATGGCATGGAGTTAAT 57.573 30.769 10.98 7.52 39.54 1.40
2840 4639 7.838079 AATTGCTTATATGGCATGGAGTTAA 57.162 32.000 10.98 5.78 39.54 2.01
2841 4640 7.838079 AAATTGCTTATATGGCATGGAGTTA 57.162 32.000 10.98 0.00 39.54 2.24
2842 4641 6.736110 AAATTGCTTATATGGCATGGAGTT 57.264 33.333 10.98 0.00 39.54 3.01
2843 4642 6.736110 AAAATTGCTTATATGGCATGGAGT 57.264 33.333 10.98 0.00 39.54 3.85
2864 4663 9.901172 GGAGTAACTTAGATATCCCAAGAAAAA 57.099 33.333 17.37 2.33 0.00 1.94
2865 4664 8.491958 GGGAGTAACTTAGATATCCCAAGAAAA 58.508 37.037 17.37 4.13 44.85 2.29
2866 4665 8.030913 GGGAGTAACTTAGATATCCCAAGAAA 57.969 38.462 17.37 5.95 44.85 2.52
2867 4666 7.613551 GGGAGTAACTTAGATATCCCAAGAA 57.386 40.000 17.37 6.21 44.85 2.52
2872 4671 8.487028 CCATAATGGGAGTAACTTAGATATCCC 58.513 40.741 0.00 0.98 45.55 3.85
2873 4672 7.988028 GCCATAATGGGAGTAACTTAGATATCC 59.012 40.741 0.00 0.00 38.19 2.59
2874 4673 8.763601 AGCCATAATGGGAGTAACTTAGATATC 58.236 37.037 0.00 0.00 38.19 1.63
2875 4674 8.686739 AGCCATAATGGGAGTAACTTAGATAT 57.313 34.615 0.00 0.00 38.19 1.63
2876 4675 9.256228 CTAGCCATAATGGGAGTAACTTAGATA 57.744 37.037 0.00 0.00 38.19 1.98
2877 4676 7.310734 GCTAGCCATAATGGGAGTAACTTAGAT 60.311 40.741 2.29 0.00 38.19 1.98
2878 4677 6.014499 GCTAGCCATAATGGGAGTAACTTAGA 60.014 42.308 2.29 0.00 38.19 2.10
2879 4678 6.166982 GCTAGCCATAATGGGAGTAACTTAG 58.833 44.000 2.29 0.00 38.19 2.18
2880 4679 5.012768 GGCTAGCCATAATGGGAGTAACTTA 59.987 44.000 29.33 0.00 38.19 2.24
2881 4680 4.202472 GGCTAGCCATAATGGGAGTAACTT 60.202 45.833 29.33 0.00 38.19 2.66
2882 4681 3.328050 GGCTAGCCATAATGGGAGTAACT 59.672 47.826 29.33 0.00 38.19 2.24
2883 4682 3.328050 AGGCTAGCCATAATGGGAGTAAC 59.672 47.826 34.70 2.35 38.19 2.50
2884 4683 3.598264 AGGCTAGCCATAATGGGAGTAA 58.402 45.455 34.70 0.00 38.19 2.24
2885 4684 3.275848 AGGCTAGCCATAATGGGAGTA 57.724 47.619 34.70 0.00 38.19 2.59
2886 4685 2.124560 AGGCTAGCCATAATGGGAGT 57.875 50.000 34.70 7.82 38.19 3.85
2887 4686 3.584848 AGTTAGGCTAGCCATAATGGGAG 59.415 47.826 34.70 0.00 38.19 4.30
2888 4687 3.598264 AGTTAGGCTAGCCATAATGGGA 58.402 45.455 34.70 8.70 38.19 4.37
2889 4688 5.499004 TTAGTTAGGCTAGCCATAATGGG 57.501 43.478 34.70 0.00 38.19 4.00
2890 4689 7.575720 GCATTTTAGTTAGGCTAGCCATAATGG 60.576 40.741 34.70 17.84 41.55 3.16
2891 4690 7.308435 GCATTTTAGTTAGGCTAGCCATAATG 58.692 38.462 34.70 25.99 38.92 1.90
2892 4691 6.434340 GGCATTTTAGTTAGGCTAGCCATAAT 59.566 38.462 34.70 22.32 37.29 1.28
2893 4692 5.768164 GGCATTTTAGTTAGGCTAGCCATAA 59.232 40.000 34.70 24.42 37.29 1.90
2894 4693 5.163141 TGGCATTTTAGTTAGGCTAGCCATA 60.163 40.000 34.70 20.43 40.30 2.74
2895 4694 4.145052 GGCATTTTAGTTAGGCTAGCCAT 58.855 43.478 34.70 21.45 37.29 4.40
2896 4695 3.053991 TGGCATTTTAGTTAGGCTAGCCA 60.054 43.478 34.70 18.26 41.84 4.75
2897 4696 3.315470 GTGGCATTTTAGTTAGGCTAGCC 59.685 47.826 27.19 27.19 37.63 3.93
2898 4697 3.945285 TGTGGCATTTTAGTTAGGCTAGC 59.055 43.478 6.04 6.04 0.00 3.42
2899 4698 6.058183 AGATGTGGCATTTTAGTTAGGCTAG 58.942 40.000 0.00 0.00 0.00 3.42
2900 4699 6.001449 AGATGTGGCATTTTAGTTAGGCTA 57.999 37.500 0.00 0.00 0.00 3.93
2901 4700 4.860022 AGATGTGGCATTTTAGTTAGGCT 58.140 39.130 0.00 0.00 0.00 4.58
2902 4701 5.343249 CAAGATGTGGCATTTTAGTTAGGC 58.657 41.667 0.00 0.00 0.00 3.93
2903 4702 5.894807 CCAAGATGTGGCATTTTAGTTAGG 58.105 41.667 0.00 0.00 41.72 2.69
2917 4716 6.336842 AGAGAACCAAATTTCCAAGATGTG 57.663 37.500 0.00 0.00 0.00 3.21
2918 4717 5.182001 CGAGAGAACCAAATTTCCAAGATGT 59.818 40.000 0.00 0.00 0.00 3.06
2919 4718 5.392380 CCGAGAGAACCAAATTTCCAAGATG 60.392 44.000 0.00 0.00 0.00 2.90
2920 4719 4.702131 CCGAGAGAACCAAATTTCCAAGAT 59.298 41.667 0.00 0.00 0.00 2.40
2921 4720 4.072131 CCGAGAGAACCAAATTTCCAAGA 58.928 43.478 0.00 0.00 0.00 3.02
2922 4721 4.072131 TCCGAGAGAACCAAATTTCCAAG 58.928 43.478 0.00 0.00 0.00 3.61
2923 4722 4.093472 TCCGAGAGAACCAAATTTCCAA 57.907 40.909 0.00 0.00 0.00 3.53
2924 4723 3.780804 TCCGAGAGAACCAAATTTCCA 57.219 42.857 0.00 0.00 0.00 3.53
2925 4724 5.183228 TGTATCCGAGAGAACCAAATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2936 4735 4.615223 CGACACTTGTTTGTATCCGAGAGA 60.615 45.833 0.00 0.00 0.00 3.10
2957 4773 2.992124 TTGTCTTGTTCTTGGGACGA 57.008 45.000 0.00 0.00 0.00 4.20
2959 4775 4.652822 ACCTATTGTCTTGTTCTTGGGAC 58.347 43.478 0.00 0.00 0.00 4.46
2979 4795 8.613482 GGCTATTCTTGTGTTATAAAAGAGACC 58.387 37.037 0.00 0.00 31.89 3.85
2983 4799 7.829211 AGCTGGCTATTCTTGTGTTATAAAAGA 59.171 33.333 0.00 0.00 0.00 2.52
2990 4806 6.707290 TCTTTAGCTGGCTATTCTTGTGTTA 58.293 36.000 0.00 0.00 0.00 2.41
2992 4808 5.165961 TCTTTAGCTGGCTATTCTTGTGT 57.834 39.130 0.00 0.00 0.00 3.72
2996 4816 5.636903 TCCATCTTTAGCTGGCTATTCTT 57.363 39.130 0.00 0.00 31.68 2.52
3006 4826 6.156949 TCTCTTTGGTGTATCCATCTTTAGCT 59.843 38.462 0.00 0.00 46.60 3.32
3030 4864 2.092429 TGGTTCTTCTGCCCCATGTATC 60.092 50.000 0.00 0.00 0.00 2.24
3035 4869 0.779997 AGTTGGTTCTTCTGCCCCAT 59.220 50.000 0.00 0.00 0.00 4.00
3036 4870 0.555769 AAGTTGGTTCTTCTGCCCCA 59.444 50.000 0.00 0.00 0.00 4.96
3048 4882 0.320374 TCTCCGCGATTCAAGTTGGT 59.680 50.000 8.23 0.00 0.00 3.67
3060 4894 1.226717 GAGCTACCTGTTCTCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
3061 4895 1.142097 GGAGCTACCTGTTCTCCGC 59.858 63.158 0.00 0.00 37.28 5.54
3068 4902 1.076906 ACAGACCGGAGCTACCTGT 59.923 57.895 9.46 8.40 38.77 4.00
3069 4903 0.965866 TCACAGACCGGAGCTACCTG 60.966 60.000 9.46 7.75 36.31 4.00
3070 4904 0.251653 TTCACAGACCGGAGCTACCT 60.252 55.000 9.46 0.00 36.31 3.08
3071 4905 0.108756 GTTCACAGACCGGAGCTACC 60.109 60.000 9.46 0.00 0.00 3.18
3074 4908 0.034059 CAAGTTCACAGACCGGAGCT 59.966 55.000 9.46 1.09 0.00 4.09
3076 4910 1.867233 CAACAAGTTCACAGACCGGAG 59.133 52.381 9.46 0.00 0.00 4.63
3077 4911 1.483004 TCAACAAGTTCACAGACCGGA 59.517 47.619 9.46 0.00 0.00 5.14
3078 4912 1.948104 TCAACAAGTTCACAGACCGG 58.052 50.000 0.00 0.00 0.00 5.28
3083 4917 5.155509 TGAACGATTCAACAAGTTCACAG 57.844 39.130 5.86 0.00 45.21 3.66
3095 4929 2.413796 GCACGTATGGTTGAACGATTCA 59.586 45.455 0.00 0.00 41.55 2.57
3096 4930 2.671396 AGCACGTATGGTTGAACGATTC 59.329 45.455 0.00 0.00 41.55 2.52
3099 4933 1.269883 ACAGCACGTATGGTTGAACGA 60.270 47.619 1.45 0.00 41.55 3.85
3101 4935 4.491924 CGATTACAGCACGTATGGTTGAAC 60.492 45.833 5.09 0.00 33.06 3.18
3108 4942 2.724690 GGCTACGATTACAGCACGTATG 59.275 50.000 0.00 0.00 40.67 2.39
3112 4946 0.524816 ACGGCTACGATTACAGCACG 60.525 55.000 0.00 0.00 44.60 5.34
3116 4950 7.541091 ACATATTGAATACGGCTACGATTACAG 59.459 37.037 0.00 0.00 44.60 2.74
3121 4955 5.093457 CGACATATTGAATACGGCTACGAT 58.907 41.667 0.00 0.00 44.60 3.73
3126 4960 3.386768 AGCGACATATTGAATACGGCT 57.613 42.857 0.00 0.00 0.00 5.52
3137 4971 3.679980 GCGGATATGACAAAGCGACATAT 59.320 43.478 0.00 0.00 42.99 1.78
3139 4973 1.867233 GCGGATATGACAAAGCGACAT 59.133 47.619 0.00 0.00 34.31 3.06
3144 4978 0.861837 CGAGGCGGATATGACAAAGC 59.138 55.000 0.00 0.00 0.00 3.51
3148 4982 1.363807 CAGCGAGGCGGATATGACA 59.636 57.895 0.00 0.00 0.00 3.58
3167 5001 1.682451 TATTTCAGTCCTCGCCCCCG 61.682 60.000 0.00 0.00 0.00 5.73
3172 5006 4.504858 TCCTTTCTTATTTCAGTCCTCGC 58.495 43.478 0.00 0.00 0.00 5.03
3176 5010 9.631452 CTCATTTTTCCTTTCTTATTTCAGTCC 57.369 33.333 0.00 0.00 0.00 3.85
3186 5020 4.340950 TGCCGAACTCATTTTTCCTTTCTT 59.659 37.500 0.00 0.00 0.00 2.52
3196 5030 3.679389 AGTCATCTTGCCGAACTCATTT 58.321 40.909 0.00 0.00 0.00 2.32
3197 5031 3.340814 AGTCATCTTGCCGAACTCATT 57.659 42.857 0.00 0.00 0.00 2.57
3198 5032 3.005554 CAAGTCATCTTGCCGAACTCAT 58.994 45.455 0.00 0.00 43.34 2.90
3199 5033 2.416747 CAAGTCATCTTGCCGAACTCA 58.583 47.619 0.00 0.00 43.34 3.41
3209 5043 6.323739 TCTTTTTGCTTAACCCAAGTCATCTT 59.676 34.615 0.00 0.00 36.55 2.40
3211 5045 6.084326 TCTTTTTGCTTAACCCAAGTCATC 57.916 37.500 0.00 0.00 36.55 2.92
3226 5060 8.938906 ACATGTCCAAAATATCATTCTTTTTGC 58.061 29.630 0.00 0.00 38.43 3.68
3246 5085 7.822822 ACATAAAGGTAGGTTTGACTACATGTC 59.177 37.037 0.00 0.00 43.99 3.06
3247 5086 7.606456 CACATAAAGGTAGGTTTGACTACATGT 59.394 37.037 2.69 2.69 43.99 3.21
3265 5104 4.754618 TGTGGTTACAGTGCTCACATAAAG 59.245 41.667 2.63 0.00 34.01 1.85
3278 5117 4.016444 AGCAATATGGGTTGTGGTTACAG 58.984 43.478 0.00 0.00 38.23 2.74
3281 5120 6.427441 TGATTAGCAATATGGGTTGTGGTTA 58.573 36.000 0.00 0.00 0.00 2.85
3292 5132 9.740239 ACATTAAGCTTGTTGATTAGCAATATG 57.260 29.630 9.86 0.00 39.85 1.78
3297 5137 9.571810 CATTTACATTAAGCTTGTTGATTAGCA 57.428 29.630 9.86 0.00 39.85 3.49
3298 5138 9.787532 TCATTTACATTAAGCTTGTTGATTAGC 57.212 29.630 9.86 0.00 37.66 3.09
3320 5167 5.013183 CCCTAATTAAGATCCCCGTCTCATT 59.987 44.000 0.00 0.00 0.00 2.57
3331 5178 9.278978 GTTCATCTTCTTCCCCTAATTAAGATC 57.721 37.037 0.00 0.00 31.88 2.75
3366 5213 6.099701 TCCATTTCTCCTCTCCGAAATCAATA 59.900 38.462 0.00 0.00 37.66 1.90
3376 5223 3.261897 TGTGTTCTCCATTTCTCCTCTCC 59.738 47.826 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.