Multiple sequence alignment - TraesCS7D01G002800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G002800 chr7D 100.000 3193 0 0 1 3193 1755214 1752022 0.000000e+00 5897
1 TraesCS7D01G002800 chr7D 97.105 760 21 1 1 760 618740820 618740062 0.000000e+00 1280
2 TraesCS7D01G002800 chr7D 84.927 889 131 2 2305 3193 605166029 605165144 0.000000e+00 896
3 TraesCS7D01G002800 chr7D 81.310 519 82 12 1000 1511 605168566 605168056 1.070000e-109 407
4 TraesCS7D01G002800 chr7D 72.609 690 159 20 2478 3160 578780138 578780804 1.940000e-47 200
5 TraesCS7D01G002800 chr5D 97.365 759 20 0 1 759 556381582 556380824 0.000000e+00 1291
6 TraesCS7D01G002800 chr5D 97.101 759 22 0 1 759 101543418 101544176 0.000000e+00 1280
7 TraesCS7D01G002800 chr5D 96.974 760 22 1 1 759 451154735 451155494 0.000000e+00 1275
8 TraesCS7D01G002800 chr5D 83.729 842 123 6 2355 3192 447388095 447387264 0.000000e+00 784
9 TraesCS7D01G002800 chr5D 81.115 879 142 14 2323 3192 447706179 447705316 0.000000e+00 682
10 TraesCS7D01G002800 chr6D 97.361 758 20 0 1 758 448225326 448226083 0.000000e+00 1290
11 TraesCS7D01G002800 chr6D 97.086 755 21 1 1 755 66124878 66125631 0.000000e+00 1271
12 TraesCS7D01G002800 chr6D 82.998 894 130 11 2305 3192 21078523 21079400 0.000000e+00 789
13 TraesCS7D01G002800 chr3D 97.358 757 20 0 1 757 608060977 608061733 0.000000e+00 1288
14 TraesCS7D01G002800 chr4D 97.113 762 20 2 1 761 335852515 335851755 0.000000e+00 1284
15 TraesCS7D01G002800 chr4D 96.850 762 21 2 1 759 450164654 450163893 0.000000e+00 1271
16 TraesCS7D01G002800 chr4D 82.701 896 131 12 2305 3192 2999456 3000335 0.000000e+00 774
17 TraesCS7D01G002800 chrUn 83.882 850 125 5 2347 3193 47479217 47480057 0.000000e+00 800
18 TraesCS7D01G002800 chr4A 81.096 894 147 13 2305 3192 603031846 603032723 0.000000e+00 695
19 TraesCS7D01G002800 chr5B 81.625 849 138 10 2350 3189 545818778 545819617 0.000000e+00 688
20 TraesCS7D01G002800 chr5B 80.670 895 149 16 2305 3192 545279608 545280485 0.000000e+00 673
21 TraesCS7D01G002800 chr5B 81.048 248 37 7 1083 1322 545817506 545817751 4.200000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G002800 chr7D 1752022 1755214 3192 True 5897.0 5897 100.0000 1 3193 1 chr7D.!!$R1 3192
1 TraesCS7D01G002800 chr7D 618740062 618740820 758 True 1280.0 1280 97.1050 1 760 1 chr7D.!!$R2 759
2 TraesCS7D01G002800 chr7D 605165144 605168566 3422 True 651.5 896 83.1185 1000 3193 2 chr7D.!!$R3 2193
3 TraesCS7D01G002800 chr5D 556380824 556381582 758 True 1291.0 1291 97.3650 1 759 1 chr5D.!!$R3 758
4 TraesCS7D01G002800 chr5D 101543418 101544176 758 False 1280.0 1280 97.1010 1 759 1 chr5D.!!$F1 758
5 TraesCS7D01G002800 chr5D 451154735 451155494 759 False 1275.0 1275 96.9740 1 759 1 chr5D.!!$F2 758
6 TraesCS7D01G002800 chr5D 447387264 447388095 831 True 784.0 784 83.7290 2355 3192 1 chr5D.!!$R1 837
7 TraesCS7D01G002800 chr5D 447705316 447706179 863 True 682.0 682 81.1150 2323 3192 1 chr5D.!!$R2 869
8 TraesCS7D01G002800 chr6D 448225326 448226083 757 False 1290.0 1290 97.3610 1 758 1 chr6D.!!$F3 757
9 TraesCS7D01G002800 chr6D 66124878 66125631 753 False 1271.0 1271 97.0860 1 755 1 chr6D.!!$F2 754
10 TraesCS7D01G002800 chr6D 21078523 21079400 877 False 789.0 789 82.9980 2305 3192 1 chr6D.!!$F1 887
11 TraesCS7D01G002800 chr3D 608060977 608061733 756 False 1288.0 1288 97.3580 1 757 1 chr3D.!!$F1 756
12 TraesCS7D01G002800 chr4D 335851755 335852515 760 True 1284.0 1284 97.1130 1 761 1 chr4D.!!$R1 760
13 TraesCS7D01G002800 chr4D 450163893 450164654 761 True 1271.0 1271 96.8500 1 759 1 chr4D.!!$R2 758
14 TraesCS7D01G002800 chr4D 2999456 3000335 879 False 774.0 774 82.7010 2305 3192 1 chr4D.!!$F1 887
15 TraesCS7D01G002800 chrUn 47479217 47480057 840 False 800.0 800 83.8820 2347 3193 1 chrUn.!!$F1 846
16 TraesCS7D01G002800 chr4A 603031846 603032723 877 False 695.0 695 81.0960 2305 3192 1 chr4A.!!$F1 887
17 TraesCS7D01G002800 chr5B 545279608 545280485 877 False 673.0 673 80.6700 2305 3192 1 chr5B.!!$F1 887
18 TraesCS7D01G002800 chr5B 545817506 545819617 2111 False 438.5 688 81.3365 1083 3189 2 chr5B.!!$F2 2106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 875 0.031994 TTTGCTTTCGCTTGGCTTCC 59.968 50.0 0.00 0.0 36.97 3.46 F
871 877 0.036164 TGCTTTCGCTTGGCTTCCTA 59.964 50.0 0.00 0.0 36.97 2.94 F
1695 1749 0.249120 TCAACGAGCACCGGATCAAT 59.751 50.0 9.46 0.0 43.93 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2124 0.036010 ACGGCTGAGGAAATGGACTG 60.036 55.000 0.00 0.0 0.0 3.51 R
2144 3109 0.036732 TGGGACACTGGCATCTGAAC 59.963 55.000 0.00 0.0 0.0 3.18 R
3013 4376 1.219393 CCTCGAGGCTCCAAAGTCC 59.781 63.158 20.67 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 125 2.205074 GATACCAGAACCATCGCACTG 58.795 52.381 0.00 0.00 0.00 3.66
302 308 0.664166 GACGTGACGGACCGCTAAAA 60.664 55.000 15.39 0.00 0.00 1.52
318 324 5.579511 CCGCTAAAACTAGAAAAATCTCGGA 59.420 40.000 0.00 0.00 33.21 4.55
398 404 5.116180 GGACATTTCATCGAACACCTCATA 58.884 41.667 0.00 0.00 0.00 2.15
561 567 1.063717 CAATGGTTATGGGCCAGGAGT 60.064 52.381 13.78 0.00 39.65 3.85
618 624 0.796312 CAAATGGGTCCAGACGAACG 59.204 55.000 0.00 0.00 0.00 3.95
760 766 3.651423 AGCCCCTTTTTCTACTAGTGTGT 59.349 43.478 5.39 0.00 0.00 3.72
761 767 4.001652 GCCCCTTTTTCTACTAGTGTGTC 58.998 47.826 5.39 0.00 0.00 3.67
762 768 4.576879 CCCCTTTTTCTACTAGTGTGTCC 58.423 47.826 5.39 0.00 0.00 4.02
763 769 4.243270 CCCTTTTTCTACTAGTGTGTCCG 58.757 47.826 5.39 0.00 0.00 4.79
764 770 4.243270 CCTTTTTCTACTAGTGTGTCCGG 58.757 47.826 5.39 0.00 0.00 5.14
765 771 4.021719 CCTTTTTCTACTAGTGTGTCCGGA 60.022 45.833 0.00 0.00 0.00 5.14
766 772 4.778534 TTTTCTACTAGTGTGTCCGGAG 57.221 45.455 3.06 0.00 0.00 4.63
767 773 3.430042 TTCTACTAGTGTGTCCGGAGT 57.570 47.619 3.06 0.00 0.00 3.85
768 774 2.708051 TCTACTAGTGTGTCCGGAGTG 58.292 52.381 3.06 0.00 0.00 3.51
769 775 2.039480 TCTACTAGTGTGTCCGGAGTGT 59.961 50.000 3.06 0.00 0.00 3.55
770 776 0.959553 ACTAGTGTGTCCGGAGTGTG 59.040 55.000 3.06 0.00 0.00 3.82
771 777 1.244816 CTAGTGTGTCCGGAGTGTGA 58.755 55.000 3.06 0.00 0.00 3.58
772 778 0.956633 TAGTGTGTCCGGAGTGTGAC 59.043 55.000 3.06 0.00 0.00 3.67
773 779 1.040893 AGTGTGTCCGGAGTGTGACA 61.041 55.000 3.06 0.00 39.08 3.58
774 780 0.179094 GTGTGTCCGGAGTGTGACAA 60.179 55.000 3.06 0.00 42.67 3.18
775 781 0.537653 TGTGTCCGGAGTGTGACAAA 59.462 50.000 3.06 0.00 42.67 2.83
776 782 1.140052 TGTGTCCGGAGTGTGACAAAT 59.860 47.619 3.06 0.00 42.67 2.32
777 783 2.218603 GTGTCCGGAGTGTGACAAATT 58.781 47.619 3.06 0.00 42.67 1.82
778 784 2.032030 GTGTCCGGAGTGTGACAAATTG 60.032 50.000 3.06 0.00 42.67 2.32
779 785 2.158885 TGTCCGGAGTGTGACAAATTGA 60.159 45.455 3.06 0.00 38.48 2.57
780 786 2.875933 GTCCGGAGTGTGACAAATTGAA 59.124 45.455 3.06 0.00 0.00 2.69
781 787 3.058914 GTCCGGAGTGTGACAAATTGAAG 60.059 47.826 3.06 0.00 0.00 3.02
782 788 2.878406 CCGGAGTGTGACAAATTGAAGT 59.122 45.455 0.00 0.00 0.00 3.01
783 789 4.062293 CCGGAGTGTGACAAATTGAAGTA 58.938 43.478 0.00 0.00 0.00 2.24
784 790 4.695455 CCGGAGTGTGACAAATTGAAGTAT 59.305 41.667 0.00 0.00 0.00 2.12
785 791 5.872617 CCGGAGTGTGACAAATTGAAGTATA 59.127 40.000 0.00 0.00 0.00 1.47
786 792 6.538742 CCGGAGTGTGACAAATTGAAGTATAT 59.461 38.462 0.00 0.00 0.00 0.86
787 793 7.709182 CCGGAGTGTGACAAATTGAAGTATATA 59.291 37.037 0.00 0.00 0.00 0.86
788 794 9.093970 CGGAGTGTGACAAATTGAAGTATATAA 57.906 33.333 0.00 0.00 0.00 0.98
802 808 8.834004 TGAAGTATATAAGTTACTGGTGGACT 57.166 34.615 0.00 0.00 30.46 3.85
803 809 9.925545 TGAAGTATATAAGTTACTGGTGGACTA 57.074 33.333 0.00 0.00 30.46 2.59
813 819 7.048512 AGTTACTGGTGGACTAAATTAGATGC 58.951 38.462 7.06 0.00 0.00 3.91
814 820 5.700402 ACTGGTGGACTAAATTAGATGCT 57.300 39.130 7.06 0.00 0.00 3.79
815 821 6.067217 ACTGGTGGACTAAATTAGATGCTT 57.933 37.500 7.06 0.00 0.00 3.91
816 822 6.116126 ACTGGTGGACTAAATTAGATGCTTC 58.884 40.000 7.06 0.00 0.00 3.86
817 823 6.069963 ACTGGTGGACTAAATTAGATGCTTCT 60.070 38.462 7.06 7.35 35.90 2.85
818 824 6.721318 TGGTGGACTAAATTAGATGCTTCTT 58.279 36.000 7.51 0.00 33.17 2.52
819 825 6.599244 TGGTGGACTAAATTAGATGCTTCTTG 59.401 38.462 7.51 0.00 33.17 3.02
820 826 6.038714 GGTGGACTAAATTAGATGCTTCTTGG 59.961 42.308 7.51 0.00 33.17 3.61
821 827 6.823689 GTGGACTAAATTAGATGCTTCTTGGA 59.176 38.462 7.51 0.00 33.17 3.53
822 828 7.500559 GTGGACTAAATTAGATGCTTCTTGGAT 59.499 37.037 7.51 0.00 33.17 3.41
823 829 7.716998 TGGACTAAATTAGATGCTTCTTGGATC 59.283 37.037 7.51 0.00 42.85 3.36
824 830 7.174080 GGACTAAATTAGATGCTTCTTGGATCC 59.826 40.741 4.20 4.20 43.44 3.36
825 831 7.810260 ACTAAATTAGATGCTTCTTGGATCCT 58.190 34.615 14.23 0.00 43.44 3.24
826 832 8.277918 ACTAAATTAGATGCTTCTTGGATCCTT 58.722 33.333 14.23 0.00 43.44 3.36
827 833 7.579761 AAATTAGATGCTTCTTGGATCCTTC 57.420 36.000 14.23 0.00 43.44 3.46
828 834 3.191078 AGATGCTTCTTGGATCCTTCG 57.809 47.619 14.23 1.13 43.44 3.79
829 835 2.503356 AGATGCTTCTTGGATCCTTCGT 59.497 45.455 14.23 0.00 43.44 3.85
830 836 2.859165 TGCTTCTTGGATCCTTCGTT 57.141 45.000 14.23 0.00 0.00 3.85
831 837 2.426522 TGCTTCTTGGATCCTTCGTTG 58.573 47.619 14.23 0.30 0.00 4.10
832 838 1.740025 GCTTCTTGGATCCTTCGTTGG 59.260 52.381 14.23 0.00 0.00 3.77
833 839 2.615493 GCTTCTTGGATCCTTCGTTGGA 60.615 50.000 14.23 2.05 40.82 3.53
835 841 4.683400 GCTTCTTGGATCCTTCGTTGGATA 60.683 45.833 14.23 0.00 46.00 2.59
836 842 5.615289 CTTCTTGGATCCTTCGTTGGATAT 58.385 41.667 14.23 0.00 46.00 1.63
837 843 6.740944 TTCTTGGATCCTTCGTTGGATATA 57.259 37.500 14.23 2.79 46.00 0.86
838 844 6.740944 TCTTGGATCCTTCGTTGGATATAA 57.259 37.500 14.23 8.74 46.00 0.98
839 845 7.316393 TCTTGGATCCTTCGTTGGATATAAT 57.684 36.000 14.23 0.00 46.00 1.28
840 846 7.161404 TCTTGGATCCTTCGTTGGATATAATG 58.839 38.462 14.23 4.56 46.00 1.90
841 847 5.804639 TGGATCCTTCGTTGGATATAATGG 58.195 41.667 14.23 0.00 46.00 3.16
842 848 5.309543 TGGATCCTTCGTTGGATATAATGGT 59.690 40.000 14.23 0.00 46.00 3.55
843 849 6.499000 TGGATCCTTCGTTGGATATAATGGTA 59.501 38.462 14.23 0.00 46.00 3.25
844 850 7.042335 GGATCCTTCGTTGGATATAATGGTAG 58.958 42.308 3.84 0.00 46.00 3.18
845 851 5.790593 TCCTTCGTTGGATATAATGGTAGC 58.209 41.667 0.00 0.00 0.00 3.58
846 852 5.305902 TCCTTCGTTGGATATAATGGTAGCA 59.694 40.000 0.00 0.00 0.00 3.49
847 853 5.639506 CCTTCGTTGGATATAATGGTAGCAG 59.360 44.000 0.00 0.00 0.00 4.24
848 854 6.413783 TTCGTTGGATATAATGGTAGCAGA 57.586 37.500 0.00 0.00 0.00 4.26
849 855 6.605471 TCGTTGGATATAATGGTAGCAGAT 57.395 37.500 0.00 0.00 0.00 2.90
850 856 7.004555 TCGTTGGATATAATGGTAGCAGATT 57.995 36.000 0.00 0.00 0.00 2.40
851 857 7.450074 TCGTTGGATATAATGGTAGCAGATTT 58.550 34.615 0.00 0.00 0.00 2.17
852 858 7.936847 TCGTTGGATATAATGGTAGCAGATTTT 59.063 33.333 0.00 0.00 0.00 1.82
853 859 8.017373 CGTTGGATATAATGGTAGCAGATTTTG 58.983 37.037 0.00 0.00 0.00 2.44
865 871 1.723003 CAGATTTTGCTTTCGCTTGGC 59.277 47.619 0.00 0.00 36.97 4.52
866 872 1.615392 AGATTTTGCTTTCGCTTGGCT 59.385 42.857 0.00 0.00 36.97 4.75
867 873 2.036346 AGATTTTGCTTTCGCTTGGCTT 59.964 40.909 0.00 0.00 36.97 4.35
868 874 1.851658 TTTTGCTTTCGCTTGGCTTC 58.148 45.000 0.00 0.00 36.97 3.86
869 875 0.031994 TTTGCTTTCGCTTGGCTTCC 59.968 50.000 0.00 0.00 36.97 3.46
870 876 0.823356 TTGCTTTCGCTTGGCTTCCT 60.823 50.000 0.00 0.00 36.97 3.36
871 877 0.036164 TGCTTTCGCTTGGCTTCCTA 59.964 50.000 0.00 0.00 36.97 2.94
872 878 0.729690 GCTTTCGCTTGGCTTCCTAG 59.270 55.000 0.00 0.00 0.00 3.02
873 879 1.373570 CTTTCGCTTGGCTTCCTAGG 58.626 55.000 0.82 0.82 0.00 3.02
874 880 0.676782 TTTCGCTTGGCTTCCTAGGC 60.677 55.000 2.96 0.00 46.64 3.93
880 886 4.760757 GGCTTCCTAGGCGATGAC 57.239 61.111 2.96 0.00 37.19 3.06
881 887 1.069935 GGCTTCCTAGGCGATGACC 59.930 63.158 2.96 0.00 37.19 4.02
882 888 1.069935 GCTTCCTAGGCGATGACCC 59.930 63.158 2.96 0.00 0.00 4.46
883 889 1.686325 GCTTCCTAGGCGATGACCCA 61.686 60.000 2.96 0.00 0.00 4.51
884 890 0.830648 CTTCCTAGGCGATGACCCAA 59.169 55.000 2.96 0.00 0.00 4.12
885 891 1.417890 CTTCCTAGGCGATGACCCAAT 59.582 52.381 2.96 0.00 0.00 3.16
886 892 1.507140 TCCTAGGCGATGACCCAATT 58.493 50.000 2.96 0.00 0.00 2.32
887 893 2.684943 TCCTAGGCGATGACCCAATTA 58.315 47.619 2.96 0.00 0.00 1.40
888 894 2.367567 TCCTAGGCGATGACCCAATTAC 59.632 50.000 2.96 0.00 0.00 1.89
889 895 2.404215 CTAGGCGATGACCCAATTACG 58.596 52.381 0.00 0.00 0.00 3.18
890 896 0.539986 AGGCGATGACCCAATTACGT 59.460 50.000 0.00 0.00 0.00 3.57
891 897 1.065709 AGGCGATGACCCAATTACGTT 60.066 47.619 0.00 0.00 0.00 3.99
892 898 1.329599 GGCGATGACCCAATTACGTTC 59.670 52.381 0.00 0.00 0.00 3.95
893 899 2.277084 GCGATGACCCAATTACGTTCT 58.723 47.619 0.00 0.00 0.00 3.01
894 900 2.284417 GCGATGACCCAATTACGTTCTC 59.716 50.000 0.00 0.00 0.00 2.87
895 901 3.782046 CGATGACCCAATTACGTTCTCT 58.218 45.455 0.00 0.00 0.00 3.10
896 902 4.181578 CGATGACCCAATTACGTTCTCTT 58.818 43.478 0.00 0.00 0.00 2.85
897 903 5.345702 CGATGACCCAATTACGTTCTCTTA 58.654 41.667 0.00 0.00 0.00 2.10
898 904 5.983720 CGATGACCCAATTACGTTCTCTTAT 59.016 40.000 0.00 0.00 0.00 1.73
899 905 6.144080 CGATGACCCAATTACGTTCTCTTATC 59.856 42.308 0.00 0.00 0.00 1.75
900 906 5.345702 TGACCCAATTACGTTCTCTTATCG 58.654 41.667 0.00 0.00 0.00 2.92
901 907 5.125900 TGACCCAATTACGTTCTCTTATCGA 59.874 40.000 0.00 0.00 0.00 3.59
902 908 6.158023 ACCCAATTACGTTCTCTTATCGAT 57.842 37.500 2.16 2.16 0.00 3.59
903 909 6.579865 ACCCAATTACGTTCTCTTATCGATT 58.420 36.000 1.71 0.00 0.00 3.34
904 910 6.479001 ACCCAATTACGTTCTCTTATCGATTG 59.521 38.462 1.71 0.00 0.00 2.67
905 911 6.700081 CCCAATTACGTTCTCTTATCGATTGA 59.300 38.462 1.71 1.74 0.00 2.57
906 912 7.096023 CCCAATTACGTTCTCTTATCGATTGAG 60.096 40.741 17.02 17.02 0.00 3.02
907 913 7.096023 CCAATTACGTTCTCTTATCGATTGAGG 60.096 40.741 20.57 11.80 0.00 3.86
908 914 4.985538 ACGTTCTCTTATCGATTGAGGT 57.014 40.909 20.57 12.25 0.00 3.85
909 915 4.673441 ACGTTCTCTTATCGATTGAGGTG 58.327 43.478 20.57 15.05 0.00 4.00
910 916 4.045104 CGTTCTCTTATCGATTGAGGTGG 58.955 47.826 20.57 10.87 0.00 4.61
911 917 4.440250 CGTTCTCTTATCGATTGAGGTGGT 60.440 45.833 20.57 0.00 0.00 4.16
912 918 5.220989 CGTTCTCTTATCGATTGAGGTGGTA 60.221 44.000 20.57 5.71 0.00 3.25
913 919 6.210078 GTTCTCTTATCGATTGAGGTGGTAG 58.790 44.000 20.57 7.57 0.00 3.18
914 920 4.278669 TCTCTTATCGATTGAGGTGGTAGC 59.721 45.833 20.57 0.00 0.00 3.58
915 921 3.958147 TCTTATCGATTGAGGTGGTAGCA 59.042 43.478 1.71 0.00 0.00 3.49
916 922 2.604046 ATCGATTGAGGTGGTAGCAC 57.396 50.000 16.75 16.75 0.00 4.40
917 923 1.262417 TCGATTGAGGTGGTAGCACA 58.738 50.000 25.23 6.34 0.00 4.57
918 924 1.621317 TCGATTGAGGTGGTAGCACAA 59.379 47.619 25.23 12.46 0.00 3.33
919 925 1.732259 CGATTGAGGTGGTAGCACAAC 59.268 52.381 25.23 17.82 0.00 3.32
920 926 2.612972 CGATTGAGGTGGTAGCACAACT 60.613 50.000 25.23 14.58 42.12 3.16
921 927 3.368013 CGATTGAGGTGGTAGCACAACTA 60.368 47.826 25.23 15.09 38.83 2.24
922 928 4.680708 CGATTGAGGTGGTAGCACAACTAT 60.681 45.833 25.23 18.46 38.83 2.12
923 929 5.451381 CGATTGAGGTGGTAGCACAACTATA 60.451 44.000 25.23 6.81 38.83 1.31
924 930 5.950544 TTGAGGTGGTAGCACAACTATAT 57.049 39.130 25.23 3.18 38.83 0.86
925 931 7.523216 CGATTGAGGTGGTAGCACAACTATATA 60.523 40.741 25.23 3.87 38.83 0.86
926 932 7.612065 TTGAGGTGGTAGCACAACTATATAT 57.388 36.000 25.23 0.00 38.83 0.86
927 933 8.715190 TTGAGGTGGTAGCACAACTATATATA 57.285 34.615 25.23 0.00 38.83 0.86
928 934 8.349568 TGAGGTGGTAGCACAACTATATATAG 57.650 38.462 25.23 16.73 38.83 1.31
929 935 7.093902 TGAGGTGGTAGCACAACTATATATAGC 60.094 40.741 25.23 6.29 38.83 2.97
930 936 6.724441 AGGTGGTAGCACAACTATATATAGCA 59.276 38.462 25.23 3.81 36.44 3.49
931 937 7.036220 GGTGGTAGCACAACTATATATAGCAG 58.964 42.308 25.23 13.26 33.68 4.24
932 938 6.531948 GTGGTAGCACAACTATATATAGCAGC 59.468 42.308 19.87 15.62 33.68 5.25
933 939 5.744345 GGTAGCACAACTATATATAGCAGCG 59.256 44.000 18.00 7.45 33.68 5.18
934 940 4.748892 AGCACAACTATATATAGCAGCGG 58.251 43.478 18.00 8.92 33.68 5.52
935 941 4.220821 AGCACAACTATATATAGCAGCGGT 59.779 41.667 18.00 8.70 33.68 5.68
936 942 5.417894 AGCACAACTATATATAGCAGCGGTA 59.582 40.000 18.00 0.00 33.68 4.02
937 943 5.515626 GCACAACTATATATAGCAGCGGTAC 59.484 44.000 18.00 3.08 33.68 3.34
938 944 6.617879 CACAACTATATATAGCAGCGGTACA 58.382 40.000 18.00 0.00 33.68 2.90
939 945 6.527023 CACAACTATATATAGCAGCGGTACAC 59.473 42.308 18.00 0.00 33.68 2.90
940 946 6.208007 ACAACTATATATAGCAGCGGTACACA 59.792 38.462 18.00 0.00 33.68 3.72
941 947 6.829229 ACTATATATAGCAGCGGTACACAA 57.171 37.500 18.00 0.00 33.68 3.33
942 948 7.223260 ACTATATATAGCAGCGGTACACAAA 57.777 36.000 18.00 0.00 33.68 2.83
943 949 7.088905 ACTATATATAGCAGCGGTACACAAAC 58.911 38.462 18.00 0.00 33.68 2.93
944 950 2.762535 ATAGCAGCGGTACACAAACT 57.237 45.000 0.00 0.00 0.00 2.66
945 951 3.880047 ATAGCAGCGGTACACAAACTA 57.120 42.857 0.00 0.00 0.00 2.24
946 952 2.536761 AGCAGCGGTACACAAACTAA 57.463 45.000 0.00 0.00 0.00 2.24
947 953 2.841215 AGCAGCGGTACACAAACTAAA 58.159 42.857 0.00 0.00 0.00 1.85
948 954 2.806244 AGCAGCGGTACACAAACTAAAG 59.194 45.455 0.00 0.00 0.00 1.85
949 955 2.546789 GCAGCGGTACACAAACTAAAGT 59.453 45.455 0.00 0.00 0.00 2.66
950 956 3.002965 GCAGCGGTACACAAACTAAAGTT 59.997 43.478 0.00 0.00 40.50 2.66
951 957 4.211794 GCAGCGGTACACAAACTAAAGTTA 59.788 41.667 0.00 0.00 37.25 2.24
952 958 5.673029 CAGCGGTACACAAACTAAAGTTAC 58.327 41.667 0.00 0.00 37.25 2.50
953 959 5.234757 CAGCGGTACACAAACTAAAGTTACA 59.765 40.000 0.00 0.00 37.25 2.41
954 960 5.816777 AGCGGTACACAAACTAAAGTTACAA 59.183 36.000 0.00 0.00 37.25 2.41
955 961 6.018507 AGCGGTACACAAACTAAAGTTACAAG 60.019 38.462 0.00 0.00 37.25 3.16
956 962 6.238184 GCGGTACACAAACTAAAGTTACAAGT 60.238 38.462 0.00 0.00 37.25 3.16
957 963 7.042791 GCGGTACACAAACTAAAGTTACAAGTA 60.043 37.037 0.00 0.00 37.25 2.24
958 964 8.268738 CGGTACACAAACTAAAGTTACAAGTAC 58.731 37.037 13.61 13.61 37.25 2.73
959 965 9.097257 GGTACACAAACTAAAGTTACAAGTACA 57.903 33.333 18.69 1.71 37.25 2.90
960 966 9.906111 GTACACAAACTAAAGTTACAAGTACAC 57.094 33.333 15.41 0.00 37.25 2.90
961 967 8.550710 ACACAAACTAAAGTTACAAGTACACA 57.449 30.769 0.00 0.00 37.25 3.72
962 968 8.662141 ACACAAACTAAAGTTACAAGTACACAG 58.338 33.333 0.00 0.00 37.25 3.66
963 969 8.875803 CACAAACTAAAGTTACAAGTACACAGA 58.124 33.333 0.00 0.00 37.25 3.41
964 970 9.609346 ACAAACTAAAGTTACAAGTACACAGAT 57.391 29.630 0.00 0.00 37.25 2.90
967 973 8.983307 ACTAAAGTTACAAGTACACAGATAGC 57.017 34.615 0.00 0.00 0.00 2.97
968 974 8.033626 ACTAAAGTTACAAGTACACAGATAGCC 58.966 37.037 0.00 0.00 0.00 3.93
969 975 5.995565 AGTTACAAGTACACAGATAGCCA 57.004 39.130 0.00 0.00 0.00 4.75
970 976 6.546428 AGTTACAAGTACACAGATAGCCAT 57.454 37.500 0.00 0.00 0.00 4.40
971 977 6.947464 AGTTACAAGTACACAGATAGCCATT 58.053 36.000 0.00 0.00 0.00 3.16
972 978 8.074613 AGTTACAAGTACACAGATAGCCATTA 57.925 34.615 0.00 0.00 0.00 1.90
973 979 8.705594 AGTTACAAGTACACAGATAGCCATTAT 58.294 33.333 0.00 0.00 0.00 1.28
974 980 8.979574 GTTACAAGTACACAGATAGCCATTATC 58.020 37.037 0.00 0.00 38.78 1.75
975 981 6.525629 ACAAGTACACAGATAGCCATTATCC 58.474 40.000 0.00 0.00 39.22 2.59
976 982 6.099701 ACAAGTACACAGATAGCCATTATCCA 59.900 38.462 0.00 0.00 39.22 3.41
977 983 6.942163 AGTACACAGATAGCCATTATCCAT 57.058 37.500 0.00 0.00 39.22 3.41
978 984 6.940739 AGTACACAGATAGCCATTATCCATC 58.059 40.000 0.00 0.00 39.22 3.51
979 985 6.728164 AGTACACAGATAGCCATTATCCATCT 59.272 38.462 0.00 0.00 39.22 2.90
980 986 7.895962 AGTACACAGATAGCCATTATCCATCTA 59.104 37.037 0.00 0.00 39.22 1.98
981 987 6.940739 ACACAGATAGCCATTATCCATCTAC 58.059 40.000 0.00 0.00 39.22 2.59
982 988 6.070538 ACACAGATAGCCATTATCCATCTACC 60.071 42.308 0.00 0.00 39.22 3.18
983 989 6.155910 CACAGATAGCCATTATCCATCTACCT 59.844 42.308 0.00 0.00 39.22 3.08
984 990 7.343057 CACAGATAGCCATTATCCATCTACCTA 59.657 40.741 0.00 0.00 39.22 3.08
985 991 7.343316 ACAGATAGCCATTATCCATCTACCTAC 59.657 40.741 0.00 0.00 39.22 3.18
986 992 6.841755 AGATAGCCATTATCCATCTACCTACC 59.158 42.308 0.00 0.00 39.22 3.18
987 993 5.029973 AGCCATTATCCATCTACCTACCT 57.970 43.478 0.00 0.00 0.00 3.08
988 994 6.167061 AGCCATTATCCATCTACCTACCTA 57.833 41.667 0.00 0.00 0.00 3.08
989 995 6.198639 AGCCATTATCCATCTACCTACCTAG 58.801 44.000 0.00 0.00 0.00 3.02
990 996 5.958987 GCCATTATCCATCTACCTACCTAGT 59.041 44.000 0.00 0.00 0.00 2.57
991 997 6.097129 GCCATTATCCATCTACCTACCTAGTC 59.903 46.154 0.00 0.00 0.00 2.59
992 998 6.608002 CCATTATCCATCTACCTACCTAGTCC 59.392 46.154 0.00 0.00 0.00 3.85
993 999 4.678538 ATCCATCTACCTACCTAGTCCC 57.321 50.000 0.00 0.00 0.00 4.46
994 1000 2.374504 TCCATCTACCTACCTAGTCCCG 59.625 54.545 0.00 0.00 0.00 5.14
995 1001 2.161030 CATCTACCTACCTAGTCCCGC 58.839 57.143 0.00 0.00 0.00 6.13
996 1002 0.475906 TCTACCTACCTAGTCCCGCC 59.524 60.000 0.00 0.00 0.00 6.13
997 1003 0.888285 CTACCTACCTAGTCCCGCCG 60.888 65.000 0.00 0.00 0.00 6.46
998 1004 1.635817 TACCTACCTAGTCCCGCCGT 61.636 60.000 0.00 0.00 0.00 5.68
1003 1009 2.279517 CTAGTCCCGCCGTGATGC 60.280 66.667 0.00 0.00 0.00 3.91
1008 1014 2.895372 CCCGCCGTGATGCTAACC 60.895 66.667 0.00 0.00 0.00 2.85
1021 1027 0.469917 GCTAACCAGCTGGCTATCCA 59.530 55.000 33.06 10.23 44.93 3.41
1024 1030 3.244561 GCTAACCAGCTGGCTATCCATTA 60.245 47.826 33.06 19.20 44.93 1.90
1030 1036 1.270305 GCTGGCTATCCATTACAGCGA 60.270 52.381 0.00 0.00 44.04 4.93
1047 1056 0.312102 CGATGCTGCTGATCTCGGTA 59.688 55.000 0.00 0.00 0.00 4.02
1051 1060 0.390860 GCTGCTGATCTCGGTACCAT 59.609 55.000 13.54 0.00 0.00 3.55
1052 1061 1.604185 GCTGCTGATCTCGGTACCATC 60.604 57.143 13.54 8.20 0.00 3.51
1183 1195 0.601311 GTTCAAGCTCACCTGCGACT 60.601 55.000 0.00 0.00 38.13 4.18
1218 1233 2.970639 CGGCTTCTCCTCGGTGAA 59.029 61.111 1.07 1.07 0.00 3.18
1222 1237 0.320771 GCTTCTCCTCGGTGAAAGCA 60.321 55.000 11.80 0.00 0.00 3.91
1257 1272 0.252284 AGGTGGTCGACATCTCCCTT 60.252 55.000 18.91 0.00 34.81 3.95
1275 1290 0.249699 TTGAGAACACCACGATGCGT 60.250 50.000 0.00 0.00 42.36 5.24
1317 1332 2.848887 CTCTGTAAACATGAGCGACTCG 59.151 50.000 0.00 0.00 32.35 4.18
1323 1338 4.194720 ATGAGCGACTCGGGCGAC 62.195 66.667 3.17 0.00 32.35 5.19
1351 1366 2.583441 CGGTGGAGCTGGAACCTCA 61.583 63.158 0.00 0.00 0.00 3.86
1352 1367 1.761174 GGTGGAGCTGGAACCTCAA 59.239 57.895 0.00 0.00 0.00 3.02
1355 1370 1.376037 GGAGCTGGAACCTCAACGG 60.376 63.158 0.00 0.00 39.35 4.44
1358 1373 2.342279 CTGGAACCTCAACGGCGA 59.658 61.111 16.62 0.00 35.61 5.54
1361 1376 2.750888 GGAACCTCAACGGCGATGC 61.751 63.158 16.62 0.00 35.61 3.91
1362 1377 2.031919 AACCTCAACGGCGATGCA 59.968 55.556 16.62 1.26 35.61 3.96
1363 1378 1.573829 GAACCTCAACGGCGATGCAA 61.574 55.000 16.62 0.00 35.61 4.08
1364 1379 0.960364 AACCTCAACGGCGATGCAAT 60.960 50.000 16.62 0.00 35.61 3.56
1365 1380 1.353103 CCTCAACGGCGATGCAATC 59.647 57.895 16.62 0.00 40.89 2.67
1374 1389 3.827634 GATGCAATCGGTGGGGTC 58.172 61.111 0.00 0.00 31.13 4.46
1395 1410 2.696707 CCTGCCAATGCCATACATTCTT 59.303 45.455 0.00 0.00 46.28 2.52
1396 1414 3.890756 CCTGCCAATGCCATACATTCTTA 59.109 43.478 0.00 0.00 46.28 2.10
1401 1419 4.261741 CCAATGCCATACATTCTTAGGTGC 60.262 45.833 0.00 0.00 46.28 5.01
1405 1423 2.794910 CCATACATTCTTAGGTGCGACG 59.205 50.000 0.00 0.00 0.00 5.12
1406 1424 2.572191 TACATTCTTAGGTGCGACGG 57.428 50.000 0.00 0.00 0.00 4.79
1443 1461 2.203294 GGGTGCAACGTGGAGGTT 60.203 61.111 0.00 0.00 38.12 3.50
1454 1472 0.320421 GTGGAGGTTACGCTGCTGAA 60.320 55.000 0.00 0.00 0.00 3.02
1456 1474 1.352156 GGAGGTTACGCTGCTGAACG 61.352 60.000 0.00 0.00 0.00 3.95
1457 1475 1.352156 GAGGTTACGCTGCTGAACGG 61.352 60.000 0.00 0.00 0.00 4.44
1460 1478 1.080093 TTACGCTGCTGAACGGGAG 60.080 57.895 0.00 0.00 0.00 4.30
1482 1500 0.811616 GCAGCGGAGGAATCATCGTT 60.812 55.000 0.00 0.00 0.00 3.85
1491 1509 1.571919 GAATCATCGTTAGCGGCTGT 58.428 50.000 13.86 0.00 38.89 4.40
1504 1522 2.749441 GCTGTGCCTCCTTCTGCC 60.749 66.667 0.00 0.00 0.00 4.85
1507 1525 3.334054 GTGCCTCCTTCTGCCCCT 61.334 66.667 0.00 0.00 0.00 4.79
1508 1526 1.995626 GTGCCTCCTTCTGCCCCTA 60.996 63.158 0.00 0.00 0.00 3.53
1509 1527 1.004758 TGCCTCCTTCTGCCCCTAT 59.995 57.895 0.00 0.00 0.00 2.57
1511 1529 2.061790 GCCTCCTTCTGCCCCTATGG 62.062 65.000 0.00 0.00 37.09 2.74
1522 1540 2.256591 CCCTATGGCACGCAGATGC 61.257 63.158 0.00 0.00 45.34 3.91
1530 1548 2.125912 ACGCAGATGCAGACCGAC 60.126 61.111 5.55 0.00 42.21 4.79
1531 1549 2.125952 CGCAGATGCAGACCGACA 60.126 61.111 5.55 0.00 42.21 4.35
1546 1573 4.393155 ACAGCGGCAAGATCGGCA 62.393 61.111 13.28 0.00 35.13 5.69
1547 1574 3.126879 CAGCGGCAAGATCGGCAA 61.127 61.111 13.28 0.00 35.13 4.52
1548 1575 2.821366 AGCGGCAAGATCGGCAAG 60.821 61.111 13.28 8.23 35.13 4.01
1561 1615 1.690219 CGGCAAGATCCCTACAGGCT 61.690 60.000 0.00 0.00 34.51 4.58
1566 1620 1.173444 AGATCCCTACAGGCTACGCG 61.173 60.000 3.53 3.53 34.51 6.01
1573 1627 0.392863 TACAGGCTACGCGTCCTACA 60.393 55.000 18.63 5.28 0.00 2.74
1576 1630 2.772691 GGCTACGCGTCCTACAGCT 61.773 63.158 25.17 0.00 32.78 4.24
1579 1633 1.140407 CTACGCGTCCTACAGCTTGC 61.140 60.000 18.63 0.00 0.00 4.01
1624 1678 1.443194 GCGACGCCGAGAAGTTACA 60.443 57.895 9.14 0.00 38.22 2.41
1625 1679 1.005294 GCGACGCCGAGAAGTTACAA 61.005 55.000 9.14 0.00 38.22 2.41
1626 1680 1.625616 CGACGCCGAGAAGTTACAAT 58.374 50.000 0.00 0.00 38.22 2.71
1630 1684 2.288579 ACGCCGAGAAGTTACAATGACA 60.289 45.455 0.00 0.00 0.00 3.58
1631 1685 2.930040 CGCCGAGAAGTTACAATGACAT 59.070 45.455 0.00 0.00 0.00 3.06
1632 1686 3.242091 CGCCGAGAAGTTACAATGACATG 60.242 47.826 0.00 0.00 0.00 3.21
1634 1688 4.503910 CCGAGAAGTTACAATGACATGGA 58.496 43.478 0.00 0.00 0.00 3.41
1636 1690 5.410924 CGAGAAGTTACAATGACATGGAGA 58.589 41.667 0.00 0.00 0.00 3.71
1637 1691 5.518128 CGAGAAGTTACAATGACATGGAGAG 59.482 44.000 0.00 0.00 0.00 3.20
1643 1697 2.079158 CAATGACATGGAGAGCAACGT 58.921 47.619 0.00 0.00 0.00 3.99
1662 1716 2.476051 GTGAACGTGCTCATGGCG 59.524 61.111 0.00 0.00 45.43 5.69
1666 1720 3.958147 AACGTGCTCATGGCGGAGG 62.958 63.158 7.91 0.00 45.43 4.30
1667 1721 4.147449 CGTGCTCATGGCGGAGGA 62.147 66.667 7.91 2.45 45.43 3.71
1681 1735 1.376037 GAGGAGGGTTGGCTCAACG 60.376 63.158 10.63 0.00 44.36 4.10
1694 1748 0.389817 CTCAACGAGCACCGGATCAA 60.390 55.000 9.46 0.00 43.93 2.57
1695 1749 0.249120 TCAACGAGCACCGGATCAAT 59.751 50.000 9.46 0.00 43.93 2.57
1704 1758 0.465705 ACCGGATCAATCATCTGCGT 59.534 50.000 9.46 0.00 36.63 5.24
1705 1759 1.134401 ACCGGATCAATCATCTGCGTT 60.134 47.619 9.46 0.00 36.63 4.84
1721 1775 3.702048 TTTCGCGGTGGGGAGGAG 61.702 66.667 6.13 0.00 36.39 3.69
1726 1780 2.279073 CGGTGGGGAGGAGAGCTA 59.721 66.667 0.00 0.00 0.00 3.32
1744 1804 1.409427 CTACTAAGCTGAAGGTCCCCG 59.591 57.143 0.00 0.00 0.00 5.73
1749 1809 1.153349 GCTGAAGGTCCCCGTGATC 60.153 63.158 0.00 0.00 0.00 2.92
1753 1813 2.017559 GAAGGTCCCCGTGATCCTCG 62.018 65.000 0.00 0.00 0.00 4.63
1754 1814 2.441532 GGTCCCCGTGATCCTCGA 60.442 66.667 8.60 0.00 0.00 4.04
1755 1815 2.783288 GGTCCCCGTGATCCTCGAC 61.783 68.421 8.60 0.00 0.00 4.20
1759 1819 1.753078 CCCGTGATCCTCGACTGGA 60.753 63.158 8.60 0.00 40.82 3.86
1789 1861 2.113986 GGGCAGCACCAACTGACT 59.886 61.111 0.00 0.00 45.64 3.41
1792 1864 0.250295 GGCAGCACCAACTGACTACA 60.250 55.000 0.00 0.00 42.83 2.74
1797 1869 2.093181 AGCACCAACTGACTACAACACA 60.093 45.455 0.00 0.00 0.00 3.72
1798 1870 2.878406 GCACCAACTGACTACAACACAT 59.122 45.455 0.00 0.00 0.00 3.21
1801 1873 2.813754 CCAACTGACTACAACACATGGG 59.186 50.000 0.00 0.00 0.00 4.00
1802 1874 2.185004 ACTGACTACAACACATGGGC 57.815 50.000 0.00 0.00 0.00 5.36
1833 1905 4.101448 GCTGCCCGGACCATCTGT 62.101 66.667 0.73 0.00 0.00 3.41
1860 1932 1.141657 ACCAACAGTCAGTGCACAGAT 59.858 47.619 21.04 4.09 0.00 2.90
1861 1933 2.368548 ACCAACAGTCAGTGCACAGATA 59.631 45.455 21.04 0.00 0.00 1.98
1863 1935 3.814842 CCAACAGTCAGTGCACAGATAAA 59.185 43.478 21.04 0.00 0.00 1.40
1867 1939 4.512944 ACAGTCAGTGCACAGATAAAACAG 59.487 41.667 21.04 4.37 0.00 3.16
1870 1942 3.499537 TCAGTGCACAGATAAAACAGCTG 59.500 43.478 21.04 13.48 46.47 4.24
1872 1944 4.023792 CAGTGCACAGATAAAACAGCTGAA 60.024 41.667 23.35 2.81 43.68 3.02
1873 1945 4.214971 AGTGCACAGATAAAACAGCTGAAG 59.785 41.667 23.35 0.00 43.68 3.02
1874 1946 3.503363 TGCACAGATAAAACAGCTGAAGG 59.497 43.478 23.35 3.21 43.68 3.46
1875 1947 3.503748 GCACAGATAAAACAGCTGAAGGT 59.496 43.478 23.35 4.94 43.68 3.50
1877 1949 5.507985 GCACAGATAAAACAGCTGAAGGTTT 60.508 40.000 23.35 15.95 43.68 3.27
1878 1950 6.293955 GCACAGATAAAACAGCTGAAGGTTTA 60.294 38.462 23.35 17.45 43.68 2.01
1880 1952 7.805071 CACAGATAAAACAGCTGAAGGTTTAAG 59.195 37.037 23.35 13.71 43.68 1.85
1881 1953 7.502561 ACAGATAAAACAGCTGAAGGTTTAAGT 59.497 33.333 23.35 14.20 43.68 2.24
1882 1954 8.017946 CAGATAAAACAGCTGAAGGTTTAAGTC 58.982 37.037 23.35 12.90 43.68 3.01
1883 1955 5.515797 AAAACAGCTGAAGGTTTAAGTCC 57.484 39.130 23.35 0.00 36.28 3.85
1884 1956 4.439253 AACAGCTGAAGGTTTAAGTCCT 57.561 40.909 23.35 0.00 36.81 3.85
1885 1957 3.744660 ACAGCTGAAGGTTTAAGTCCTG 58.255 45.455 23.35 0.00 35.27 3.86
1886 1958 3.391296 ACAGCTGAAGGTTTAAGTCCTGA 59.609 43.478 23.35 0.00 35.27 3.86
1888 1993 4.214332 CAGCTGAAGGTTTAAGTCCTGAAC 59.786 45.833 8.42 0.00 35.27 3.18
1900 2005 3.030291 AGTCCTGAACTCAGAGGCTATG 58.970 50.000 8.33 1.88 46.59 2.23
1901 2006 2.763448 GTCCTGAACTCAGAGGCTATGT 59.237 50.000 9.24 0.00 46.59 2.29
1923 2028 0.967380 GCCAGTGCAACAAGGGCTAT 60.967 55.000 7.78 0.00 44.20 2.97
1926 2031 2.161855 CAGTGCAACAAGGGCTATGAA 58.838 47.619 0.00 0.00 41.43 2.57
1963 2068 4.559502 GCGGATGCCAAGGTATGT 57.440 55.556 0.00 0.00 33.98 2.29
1965 2070 1.226746 GCGGATGCCAAGGTATGTAC 58.773 55.000 0.00 0.00 33.98 2.90
1966 2071 1.474320 GCGGATGCCAAGGTATGTACA 60.474 52.381 0.00 0.00 33.98 2.90
1967 2072 2.810400 GCGGATGCCAAGGTATGTACAT 60.810 50.000 13.93 13.93 33.98 2.29
1968 2073 3.067106 CGGATGCCAAGGTATGTACATC 58.933 50.000 12.68 4.27 38.79 3.06
1970 2075 4.718961 GGATGCCAAGGTATGTACATCTT 58.281 43.478 12.68 7.80 39.18 2.40
1971 2076 5.510690 CGGATGCCAAGGTATGTACATCTTA 60.511 44.000 12.68 0.00 39.18 2.10
1972 2077 6.476378 GGATGCCAAGGTATGTACATCTTAT 58.524 40.000 12.68 1.64 39.18 1.73
1973 2078 6.595716 GGATGCCAAGGTATGTACATCTTATC 59.404 42.308 12.68 9.96 39.18 1.75
1974 2079 5.538118 TGCCAAGGTATGTACATCTTATCG 58.462 41.667 12.68 3.39 0.00 2.92
1975 2080 4.929808 GCCAAGGTATGTACATCTTATCGG 59.070 45.833 12.68 9.19 0.00 4.18
1976 2081 5.479306 CCAAGGTATGTACATCTTATCGGG 58.521 45.833 12.68 4.60 0.00 5.14
1977 2082 5.245301 CCAAGGTATGTACATCTTATCGGGA 59.755 44.000 12.68 0.00 0.00 5.14
1978 2083 6.390721 CAAGGTATGTACATCTTATCGGGAG 58.609 44.000 12.68 0.00 0.00 4.30
1979 2084 4.463186 AGGTATGTACATCTTATCGGGAGC 59.537 45.833 12.68 1.02 0.00 4.70
1980 2085 4.219944 GGTATGTACATCTTATCGGGAGCA 59.780 45.833 12.68 0.00 0.00 4.26
1981 2086 3.728076 TGTACATCTTATCGGGAGCAC 57.272 47.619 0.00 0.00 0.00 4.40
1982 2087 2.364324 TGTACATCTTATCGGGAGCACC 59.636 50.000 0.00 0.00 0.00 5.01
1983 2088 1.794714 ACATCTTATCGGGAGCACCT 58.205 50.000 0.00 0.00 36.97 4.00
1984 2089 1.414181 ACATCTTATCGGGAGCACCTG 59.586 52.381 1.96 1.96 43.52 4.00
1985 2090 1.414181 CATCTTATCGGGAGCACCTGT 59.586 52.381 9.00 0.00 42.77 4.00
1986 2091 0.824109 TCTTATCGGGAGCACCTGTG 59.176 55.000 9.00 0.00 42.77 3.66
1996 2101 2.737180 CACCTGTGCCTCAGTCGT 59.263 61.111 5.51 0.00 42.19 4.34
1997 2102 1.665916 CACCTGTGCCTCAGTCGTG 60.666 63.158 5.51 4.05 42.19 4.35
1998 2103 2.740055 CCTGTGCCTCAGTCGTGC 60.740 66.667 5.51 0.00 42.19 5.34
1999 2104 2.740055 CTGTGCCTCAGTCGTGCC 60.740 66.667 0.00 0.00 39.17 5.01
2000 2105 3.231889 CTGTGCCTCAGTCGTGCCT 62.232 63.158 0.00 0.00 39.17 4.75
2001 2106 2.740055 GTGCCTCAGTCGTGCCTG 60.740 66.667 0.00 0.00 0.00 4.85
2002 2107 2.917227 TGCCTCAGTCGTGCCTGA 60.917 61.111 0.00 0.00 39.11 3.86
2003 2108 2.343758 GCCTCAGTCGTGCCTGAA 59.656 61.111 0.00 0.00 40.78 3.02
2004 2109 1.301716 GCCTCAGTCGTGCCTGAAA 60.302 57.895 0.00 0.00 40.78 2.69
2005 2110 0.884704 GCCTCAGTCGTGCCTGAAAA 60.885 55.000 0.00 0.00 40.78 2.29
2034 2183 6.639632 TTTCTTTTCAGTCCATTTCCTCAG 57.360 37.500 0.00 0.00 0.00 3.35
2035 2184 4.074970 TCTTTTCAGTCCATTTCCTCAGC 58.925 43.478 0.00 0.00 0.00 4.26
2037 2186 0.250234 TCAGTCCATTTCCTCAGCCG 59.750 55.000 0.00 0.00 0.00 5.52
2042 2191 2.115427 TCCATTTCCTCAGCCGTATGA 58.885 47.619 0.00 0.00 0.00 2.15
2045 2194 3.251729 CCATTTCCTCAGCCGTATGATTG 59.748 47.826 0.00 0.00 0.00 2.67
2049 2198 2.625314 TCCTCAGCCGTATGATTGAGAG 59.375 50.000 13.91 7.19 39.46 3.20
2055 2204 4.149571 CAGCCGTATGATTGAGAGATTTCG 59.850 45.833 0.00 0.00 0.00 3.46
2056 2205 4.038042 AGCCGTATGATTGAGAGATTTCGA 59.962 41.667 0.00 0.00 0.00 3.71
2057 2206 4.926238 GCCGTATGATTGAGAGATTTCGAT 59.074 41.667 0.00 0.00 0.00 3.59
2058 2207 5.406780 GCCGTATGATTGAGAGATTTCGATT 59.593 40.000 0.00 0.00 0.00 3.34
2059 2208 6.586463 GCCGTATGATTGAGAGATTTCGATTA 59.414 38.462 0.00 0.00 0.00 1.75
2060 2209 7.276658 GCCGTATGATTGAGAGATTTCGATTAT 59.723 37.037 0.00 0.00 0.00 1.28
2061 2210 9.144747 CCGTATGATTGAGAGATTTCGATTATT 57.855 33.333 0.00 0.00 0.00 1.40
2090 3055 9.138062 CATTTATATGTAGACATCAGAGAGTGC 57.862 37.037 0.00 0.00 37.76 4.40
2103 3068 3.675225 CAGAGAGTGCGATCGAAAAGAAA 59.325 43.478 21.57 0.00 0.00 2.52
2120 3085 3.157087 AGAAAAACATGGATGCTTCGGT 58.843 40.909 0.00 0.00 0.00 4.69
2126 3091 0.615331 ATGGATGCTTCGGTGACTGT 59.385 50.000 0.00 0.00 0.00 3.55
2129 3094 1.608025 GGATGCTTCGGTGACTGTGAA 60.608 52.381 0.00 0.00 0.00 3.18
2138 3103 2.483013 CGGTGACTGTGAAGAACTTCCA 60.483 50.000 11.30 8.26 38.77 3.53
2144 3109 1.070134 TGTGAAGAACTTCCAGGGACG 59.930 52.381 11.30 0.00 38.77 4.79
2150 3115 1.343465 GAACTTCCAGGGACGTTCAGA 59.657 52.381 24.60 0.00 46.17 3.27
2155 3120 1.296392 CAGGGACGTTCAGATGCCA 59.704 57.895 0.00 0.00 0.00 4.92
2156 3121 0.742281 CAGGGACGTTCAGATGCCAG 60.742 60.000 0.00 0.00 0.00 4.85
2164 3129 0.994247 TTCAGATGCCAGTGTCCCAT 59.006 50.000 0.00 0.00 0.00 4.00
2184 3149 2.043953 GGACTGATGGCAACCCCC 60.044 66.667 0.00 0.00 0.00 5.40
2203 3193 2.500910 CCCCACGGTAAACACAGGTATA 59.499 50.000 0.00 0.00 0.00 1.47
2204 3194 3.135167 CCCCACGGTAAACACAGGTATAT 59.865 47.826 0.00 0.00 0.00 0.86
2206 3196 4.124238 CCACGGTAAACACAGGTATATGG 58.876 47.826 0.00 0.00 0.00 2.74
2207 3197 4.383335 CCACGGTAAACACAGGTATATGGT 60.383 45.833 0.00 0.00 0.00 3.55
2208 3198 5.180271 CACGGTAAACACAGGTATATGGTT 58.820 41.667 0.00 0.00 0.00 3.67
2209 3199 5.064198 CACGGTAAACACAGGTATATGGTTG 59.936 44.000 0.00 0.00 0.00 3.77
2211 3201 5.522460 CGGTAAACACAGGTATATGGTTGAG 59.478 44.000 0.00 0.00 0.00 3.02
2212 3202 6.628621 CGGTAAACACAGGTATATGGTTGAGA 60.629 42.308 0.00 0.00 0.00 3.27
2213 3203 7.107542 GGTAAACACAGGTATATGGTTGAGAA 58.892 38.462 0.00 0.00 0.00 2.87
2215 3205 7.865706 AAACACAGGTATATGGTTGAGAATC 57.134 36.000 0.00 0.00 0.00 2.52
2231 3221 5.946298 TGAGAATCACTGCATGTCAATTTC 58.054 37.500 0.00 0.00 42.56 2.17
2234 3224 6.989659 AGAATCACTGCATGTCAATTTCTTT 58.010 32.000 0.00 0.00 0.00 2.52
2235 3225 7.439381 AGAATCACTGCATGTCAATTTCTTTT 58.561 30.769 0.00 0.00 0.00 2.27
2236 3226 8.579006 AGAATCACTGCATGTCAATTTCTTTTA 58.421 29.630 0.00 0.00 0.00 1.52
2239 3229 9.793252 ATCACTGCATGTCAATTTCTTTTATAC 57.207 29.630 0.00 0.00 0.00 1.47
2240 3230 8.791675 TCACTGCATGTCAATTTCTTTTATACA 58.208 29.630 0.00 0.00 0.00 2.29
2241 3231 9.577110 CACTGCATGTCAATTTCTTTTATACAT 57.423 29.630 0.00 0.00 0.00 2.29
2242 3232 9.577110 ACTGCATGTCAATTTCTTTTATACATG 57.423 29.630 0.00 0.00 43.39 3.21
2298 3648 8.997621 TCTAACACAGTTACATCCTGATAAAC 57.002 34.615 0.00 0.00 34.04 2.01
2299 3649 8.038944 TCTAACACAGTTACATCCTGATAAACC 58.961 37.037 0.00 0.00 34.04 3.27
2300 3650 5.497474 ACACAGTTACATCCTGATAAACCC 58.503 41.667 0.00 0.00 34.04 4.11
2302 3652 6.180472 CACAGTTACATCCTGATAAACCCTT 58.820 40.000 0.00 0.00 34.04 3.95
2305 3655 6.540189 CAGTTACATCCTGATAAACCCTTGAG 59.460 42.308 0.00 0.00 31.38 3.02
2306 3656 6.215636 AGTTACATCCTGATAAACCCTTGAGT 59.784 38.462 0.00 0.00 0.00 3.41
2343 3706 9.906660 GTGTATTGTTTAATTTTCAGGTCATCA 57.093 29.630 0.00 0.00 0.00 3.07
2348 3711 8.175925 TGTTTAATTTTCAGGTCATCATCACA 57.824 30.769 0.00 0.00 0.00 3.58
2365 3728 5.776208 TCATCACATGGGATTAATCATTGGG 59.224 40.000 8.02 11.50 0.00 4.12
2376 3739 2.276732 ATCATTGGGCTATCGGTTGG 57.723 50.000 0.00 0.00 0.00 3.77
2386 3749 1.339644 TATCGGTTGGTAGTGGCCCC 61.340 60.000 0.00 0.00 0.00 5.80
2423 3786 4.192317 GGTTCTTGGTGCACTCCTAATAG 58.808 47.826 17.98 4.22 0.00 1.73
2475 3838 9.727859 GAAGACTTTAAGGAGGAAGTTCTTTAT 57.272 33.333 2.25 0.00 36.31 1.40
2485 3848 5.769367 AGGAAGTTCTTTATTCAAAACCGC 58.231 37.500 2.25 0.00 0.00 5.68
2494 3857 1.096416 TTCAAAACCGCGGACAACTT 58.904 45.000 35.90 12.97 0.00 2.66
2500 3863 1.096416 ACCGCGGACAACTTTTGAAA 58.904 45.000 35.90 0.00 0.00 2.69
2548 3911 4.354893 AGCAGAGAGGATGATCATTTCC 57.645 45.455 10.14 8.51 0.00 3.13
2558 3921 5.547276 AGGATGATCATTTCCTTAGAGGAGG 59.453 44.000 10.14 0.00 46.73 4.30
2561 3924 5.280499 TGATCATTTCCTTAGAGGAGGTGA 58.720 41.667 12.65 12.65 46.73 4.02
2590 3953 7.659652 AGCTACTAATAATTTCGATCAAGCC 57.340 36.000 0.00 0.00 0.00 4.35
2617 3980 2.692368 GGTGGAGGAGGGCATGGA 60.692 66.667 0.00 0.00 0.00 3.41
2656 4019 6.944234 ATCTTGTCAGATCTACATGTCGTA 57.056 37.500 0.00 0.00 34.26 3.43
2673 4036 4.631377 TGTCGTAGCCATCAAGAAATCAAG 59.369 41.667 0.00 0.00 0.00 3.02
2678 4041 4.213513 AGCCATCAAGAAATCAAGGATCC 58.786 43.478 2.48 2.48 0.00 3.36
2692 4055 9.887862 AAATCAAGGATCCACCATAAGAATATT 57.112 29.630 15.82 0.00 42.04 1.28
2693 4056 8.874744 ATCAAGGATCCACCATAAGAATATTG 57.125 34.615 15.82 4.90 42.04 1.90
2728 4091 5.938322 GAAGAATTCATTAACGAGGTTGCA 58.062 37.500 8.44 0.00 46.62 4.08
2786 4149 2.363306 TCATGGTTGTTGCCTTGAGT 57.637 45.000 0.00 0.00 37.65 3.41
2797 4160 0.390472 GCCTTGAGTCAGAAGTCCCG 60.390 60.000 0.00 0.00 0.00 5.14
3013 4376 4.082274 TGCATTGACAGCAAAAGTATCG 57.918 40.909 0.00 0.00 39.39 2.92
3025 4388 2.693267 AAGTATCGGACTTTGGAGCC 57.307 50.000 0.00 0.00 46.79 4.70
3058 4430 7.227156 ACATTCTAGATCAAACTGGAACAACT 58.773 34.615 0.00 0.00 39.43 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 308 7.394816 TCCATTTTCTCCGAGATTTTTCTAGT 58.605 34.615 0.00 0.00 0.00 2.57
318 324 1.208293 GACCTCCGAGCTCCATTTTCT 59.792 52.381 8.47 0.00 0.00 2.52
398 404 3.323403 GCTCTAACTCACCTCCTATGCAT 59.677 47.826 3.79 3.79 0.00 3.96
414 420 3.281332 GGGCATTTGGGTGCTCTAA 57.719 52.632 0.00 0.00 42.38 2.10
731 737 3.568430 AGTAGAAAAAGGGGCTTTCGTTG 59.432 43.478 0.00 0.00 37.76 4.10
760 766 2.920724 TCAATTTGTCACACTCCGGA 57.079 45.000 2.93 2.93 0.00 5.14
761 767 2.878406 ACTTCAATTTGTCACACTCCGG 59.122 45.455 0.00 0.00 0.00 5.14
762 768 5.862924 ATACTTCAATTTGTCACACTCCG 57.137 39.130 0.00 0.00 0.00 4.63
776 782 9.263446 AGTCCACCAGTAACTTATATACTTCAA 57.737 33.333 0.00 0.00 31.33 2.69
777 783 8.834004 AGTCCACCAGTAACTTATATACTTCA 57.166 34.615 0.00 0.00 31.33 3.02
787 793 7.553044 GCATCTAATTTAGTCCACCAGTAACTT 59.447 37.037 3.45 0.00 0.00 2.66
788 794 7.048512 GCATCTAATTTAGTCCACCAGTAACT 58.951 38.462 3.45 0.00 0.00 2.24
789 795 7.048512 AGCATCTAATTTAGTCCACCAGTAAC 58.951 38.462 3.45 0.00 0.00 2.50
790 796 7.195374 AGCATCTAATTTAGTCCACCAGTAA 57.805 36.000 3.45 0.00 0.00 2.24
791 797 6.808321 AGCATCTAATTTAGTCCACCAGTA 57.192 37.500 3.45 0.00 0.00 2.74
792 798 5.700402 AGCATCTAATTTAGTCCACCAGT 57.300 39.130 3.45 0.00 0.00 4.00
793 799 6.352516 AGAAGCATCTAATTTAGTCCACCAG 58.647 40.000 3.45 0.00 32.88 4.00
794 800 6.313519 AGAAGCATCTAATTTAGTCCACCA 57.686 37.500 3.45 0.00 32.88 4.17
795 801 6.038714 CCAAGAAGCATCTAATTTAGTCCACC 59.961 42.308 3.45 0.00 33.77 4.61
796 802 6.823689 TCCAAGAAGCATCTAATTTAGTCCAC 59.176 38.462 3.45 0.00 33.77 4.02
797 803 6.957631 TCCAAGAAGCATCTAATTTAGTCCA 58.042 36.000 3.45 0.00 33.77 4.02
798 804 7.174080 GGATCCAAGAAGCATCTAATTTAGTCC 59.826 40.741 6.95 0.00 33.77 3.85
799 805 7.936301 AGGATCCAAGAAGCATCTAATTTAGTC 59.064 37.037 15.82 0.00 33.77 2.59
800 806 7.810260 AGGATCCAAGAAGCATCTAATTTAGT 58.190 34.615 15.82 0.00 33.77 2.24
801 807 8.688747 AAGGATCCAAGAAGCATCTAATTTAG 57.311 34.615 15.82 0.00 33.77 1.85
802 808 7.442364 CGAAGGATCCAAGAAGCATCTAATTTA 59.558 37.037 15.82 0.00 33.77 1.40
803 809 6.261826 CGAAGGATCCAAGAAGCATCTAATTT 59.738 38.462 15.82 0.00 33.77 1.82
804 810 5.762218 CGAAGGATCCAAGAAGCATCTAATT 59.238 40.000 15.82 0.00 33.77 1.40
805 811 5.163258 ACGAAGGATCCAAGAAGCATCTAAT 60.163 40.000 15.82 0.00 33.77 1.73
806 812 4.162320 ACGAAGGATCCAAGAAGCATCTAA 59.838 41.667 15.82 0.00 33.77 2.10
807 813 3.706594 ACGAAGGATCCAAGAAGCATCTA 59.293 43.478 15.82 0.00 33.77 1.98
808 814 2.503356 ACGAAGGATCCAAGAAGCATCT 59.497 45.455 15.82 0.00 37.57 2.90
809 815 2.911484 ACGAAGGATCCAAGAAGCATC 58.089 47.619 15.82 0.00 0.00 3.91
810 816 3.012518 CAACGAAGGATCCAAGAAGCAT 58.987 45.455 15.82 0.00 0.00 3.79
811 817 2.426522 CAACGAAGGATCCAAGAAGCA 58.573 47.619 15.82 0.00 0.00 3.91
812 818 1.740025 CCAACGAAGGATCCAAGAAGC 59.260 52.381 15.82 0.00 0.00 3.86
813 819 3.334583 TCCAACGAAGGATCCAAGAAG 57.665 47.619 15.82 2.87 31.23 2.85
814 820 5.630415 ATATCCAACGAAGGATCCAAGAA 57.370 39.130 15.82 0.31 45.16 2.52
815 821 6.740944 TTATATCCAACGAAGGATCCAAGA 57.259 37.500 15.82 0.00 45.16 3.02
816 822 6.372659 CCATTATATCCAACGAAGGATCCAAG 59.627 42.308 15.82 7.06 45.16 3.61
817 823 6.183361 ACCATTATATCCAACGAAGGATCCAA 60.183 38.462 15.82 11.17 45.16 3.53
818 824 5.309543 ACCATTATATCCAACGAAGGATCCA 59.690 40.000 15.82 2.16 45.16 3.41
819 825 5.805728 ACCATTATATCCAACGAAGGATCC 58.194 41.667 14.91 2.48 45.16 3.36
820 826 6.535508 GCTACCATTATATCCAACGAAGGATC 59.464 42.308 14.91 0.00 45.16 3.36
822 828 5.305902 TGCTACCATTATATCCAACGAAGGA 59.694 40.000 3.24 3.24 43.01 3.36
823 829 5.547465 TGCTACCATTATATCCAACGAAGG 58.453 41.667 0.00 0.00 0.00 3.46
824 830 6.455647 TCTGCTACCATTATATCCAACGAAG 58.544 40.000 0.00 0.00 0.00 3.79
825 831 6.413783 TCTGCTACCATTATATCCAACGAA 57.586 37.500 0.00 0.00 0.00 3.85
826 832 6.605471 ATCTGCTACCATTATATCCAACGA 57.395 37.500 0.00 0.00 0.00 3.85
827 833 7.672983 AAATCTGCTACCATTATATCCAACG 57.327 36.000 0.00 0.00 0.00 4.10
854 860 1.373570 CCTAGGAAGCCAAGCGAAAG 58.626 55.000 1.05 0.00 0.00 2.62
855 861 0.676782 GCCTAGGAAGCCAAGCGAAA 60.677 55.000 14.75 0.00 0.00 3.46
856 862 1.078426 GCCTAGGAAGCCAAGCGAA 60.078 57.895 14.75 0.00 0.00 4.70
857 863 2.584608 GCCTAGGAAGCCAAGCGA 59.415 61.111 14.75 0.00 0.00 4.93
858 864 2.650813 ATCGCCTAGGAAGCCAAGCG 62.651 60.000 14.75 6.16 38.97 4.68
859 865 1.147153 ATCGCCTAGGAAGCCAAGC 59.853 57.895 14.75 0.00 0.00 4.01
860 866 0.465705 TCATCGCCTAGGAAGCCAAG 59.534 55.000 14.75 0.00 0.00 3.61
861 867 0.178068 GTCATCGCCTAGGAAGCCAA 59.822 55.000 14.75 0.00 0.00 4.52
862 868 1.686325 GGTCATCGCCTAGGAAGCCA 61.686 60.000 14.75 0.00 0.00 4.75
863 869 1.069935 GGTCATCGCCTAGGAAGCC 59.930 63.158 14.75 1.16 0.00 4.35
864 870 1.069935 GGGTCATCGCCTAGGAAGC 59.930 63.158 14.75 0.00 0.00 3.86
865 871 0.830648 TTGGGTCATCGCCTAGGAAG 59.169 55.000 14.75 5.56 0.00 3.46
866 872 1.507140 ATTGGGTCATCGCCTAGGAA 58.493 50.000 14.75 0.00 0.00 3.36
867 873 1.507140 AATTGGGTCATCGCCTAGGA 58.493 50.000 14.75 0.00 0.00 2.94
868 874 2.767505 GTAATTGGGTCATCGCCTAGG 58.232 52.381 3.67 3.67 0.00 3.02
869 875 2.223971 ACGTAATTGGGTCATCGCCTAG 60.224 50.000 0.00 0.00 0.00 3.02
870 876 1.758280 ACGTAATTGGGTCATCGCCTA 59.242 47.619 0.00 0.00 0.00 3.93
871 877 0.539986 ACGTAATTGGGTCATCGCCT 59.460 50.000 0.00 0.00 0.00 5.52
872 878 1.329599 GAACGTAATTGGGTCATCGCC 59.670 52.381 0.00 0.00 0.00 5.54
873 879 2.277084 AGAACGTAATTGGGTCATCGC 58.723 47.619 0.00 0.00 0.00 4.58
874 880 3.782046 AGAGAACGTAATTGGGTCATCG 58.218 45.455 0.00 0.00 0.00 3.84
875 881 6.144080 CGATAAGAGAACGTAATTGGGTCATC 59.856 42.308 0.00 0.00 0.00 2.92
876 882 5.983720 CGATAAGAGAACGTAATTGGGTCAT 59.016 40.000 0.00 0.00 0.00 3.06
877 883 5.125900 TCGATAAGAGAACGTAATTGGGTCA 59.874 40.000 0.00 0.00 0.00 4.02
878 884 5.585390 TCGATAAGAGAACGTAATTGGGTC 58.415 41.667 0.00 0.00 0.00 4.46
879 885 5.587388 TCGATAAGAGAACGTAATTGGGT 57.413 39.130 0.00 0.00 0.00 4.51
880 886 6.700081 TCAATCGATAAGAGAACGTAATTGGG 59.300 38.462 0.00 0.00 0.00 4.12
881 887 7.096023 CCTCAATCGATAAGAGAACGTAATTGG 60.096 40.741 22.52 5.57 0.00 3.16
882 888 7.435488 ACCTCAATCGATAAGAGAACGTAATTG 59.565 37.037 22.52 9.79 0.00 2.32
883 889 7.435488 CACCTCAATCGATAAGAGAACGTAATT 59.565 37.037 22.52 0.00 0.00 1.40
884 890 6.918569 CACCTCAATCGATAAGAGAACGTAAT 59.081 38.462 22.52 0.00 0.00 1.89
885 891 6.263344 CACCTCAATCGATAAGAGAACGTAA 58.737 40.000 22.52 0.00 0.00 3.18
886 892 5.220989 CCACCTCAATCGATAAGAGAACGTA 60.221 44.000 22.52 0.00 0.00 3.57
887 893 4.440250 CCACCTCAATCGATAAGAGAACGT 60.440 45.833 22.52 12.88 0.00 3.99
888 894 4.045104 CCACCTCAATCGATAAGAGAACG 58.955 47.826 22.52 12.40 0.00 3.95
889 895 5.012328 ACCACCTCAATCGATAAGAGAAC 57.988 43.478 22.52 0.00 0.00 3.01
890 896 5.221263 GCTACCACCTCAATCGATAAGAGAA 60.221 44.000 22.52 7.49 0.00 2.87
891 897 4.278669 GCTACCACCTCAATCGATAAGAGA 59.721 45.833 22.52 8.80 0.00 3.10
892 898 4.038042 TGCTACCACCTCAATCGATAAGAG 59.962 45.833 16.78 16.78 0.00 2.85
893 899 3.958147 TGCTACCACCTCAATCGATAAGA 59.042 43.478 0.00 0.00 0.00 2.10
894 900 4.051922 GTGCTACCACCTCAATCGATAAG 58.948 47.826 0.00 0.00 35.92 1.73
895 901 3.449377 TGTGCTACCACCTCAATCGATAA 59.551 43.478 0.00 0.00 41.35 1.75
896 902 3.028130 TGTGCTACCACCTCAATCGATA 58.972 45.455 0.00 0.00 41.35 2.92
897 903 1.831106 TGTGCTACCACCTCAATCGAT 59.169 47.619 0.00 0.00 41.35 3.59
898 904 1.262417 TGTGCTACCACCTCAATCGA 58.738 50.000 0.00 0.00 41.35 3.59
899 905 1.732259 GTTGTGCTACCACCTCAATCG 59.268 52.381 0.00 0.00 41.35 3.34
900 906 3.059352 AGTTGTGCTACCACCTCAATC 57.941 47.619 0.00 0.00 41.35 2.67
901 907 4.844349 ATAGTTGTGCTACCACCTCAAT 57.156 40.909 0.00 0.00 41.35 2.57
902 908 5.950544 ATATAGTTGTGCTACCACCTCAA 57.049 39.130 0.00 0.00 41.35 3.02
903 909 7.093902 GCTATATATAGTTGTGCTACCACCTCA 60.094 40.741 18.81 0.00 35.66 3.86
904 910 7.093902 TGCTATATATAGTTGTGCTACCACCTC 60.094 40.741 18.81 0.30 35.66 3.85
905 911 6.724441 TGCTATATATAGTTGTGCTACCACCT 59.276 38.462 18.81 0.00 35.66 4.00
906 912 6.931838 TGCTATATATAGTTGTGCTACCACC 58.068 40.000 18.81 1.21 35.66 4.61
907 913 6.531948 GCTGCTATATATAGTTGTGCTACCAC 59.468 42.308 18.81 1.38 36.35 4.16
908 914 6.625081 CGCTGCTATATATAGTTGTGCTACCA 60.625 42.308 18.81 6.28 32.96 3.25
909 915 5.744345 CGCTGCTATATATAGTTGTGCTACC 59.256 44.000 18.81 2.42 32.96 3.18
910 916 5.744345 CCGCTGCTATATATAGTTGTGCTAC 59.256 44.000 18.81 3.03 32.96 3.58
911 917 5.417894 ACCGCTGCTATATATAGTTGTGCTA 59.582 40.000 18.81 0.00 32.96 3.49
912 918 4.220821 ACCGCTGCTATATATAGTTGTGCT 59.779 41.667 18.81 5.91 32.96 4.40
913 919 4.495422 ACCGCTGCTATATATAGTTGTGC 58.505 43.478 18.81 15.63 32.96 4.57
914 920 6.527023 GTGTACCGCTGCTATATATAGTTGTG 59.473 42.308 18.81 16.54 32.96 3.33
915 921 6.208007 TGTGTACCGCTGCTATATATAGTTGT 59.792 38.462 18.81 11.92 32.96 3.32
916 922 6.617879 TGTGTACCGCTGCTATATATAGTTG 58.382 40.000 18.81 13.26 32.96 3.16
917 923 6.829229 TGTGTACCGCTGCTATATATAGTT 57.171 37.500 18.81 2.77 32.96 2.24
918 924 6.829229 TTGTGTACCGCTGCTATATATAGT 57.171 37.500 18.81 3.98 32.96 2.12
919 925 7.313646 AGTTTGTGTACCGCTGCTATATATAG 58.686 38.462 14.45 14.45 0.00 1.31
920 926 7.223260 AGTTTGTGTACCGCTGCTATATATA 57.777 36.000 0.00 0.00 0.00 0.86
921 927 6.097915 AGTTTGTGTACCGCTGCTATATAT 57.902 37.500 0.00 0.00 0.00 0.86
922 928 5.524971 AGTTTGTGTACCGCTGCTATATA 57.475 39.130 0.00 0.00 0.00 0.86
923 929 4.402056 AGTTTGTGTACCGCTGCTATAT 57.598 40.909 0.00 0.00 0.00 0.86
924 930 3.880047 AGTTTGTGTACCGCTGCTATA 57.120 42.857 0.00 0.00 0.00 1.31
925 931 2.762535 AGTTTGTGTACCGCTGCTAT 57.237 45.000 0.00 0.00 0.00 2.97
926 932 3.663995 TTAGTTTGTGTACCGCTGCTA 57.336 42.857 0.00 0.00 0.00 3.49
927 933 2.536761 TTAGTTTGTGTACCGCTGCT 57.463 45.000 0.00 0.00 0.00 4.24
928 934 2.546789 ACTTTAGTTTGTGTACCGCTGC 59.453 45.455 0.00 0.00 0.00 5.25
929 935 4.806342 AACTTTAGTTTGTGTACCGCTG 57.194 40.909 0.00 0.00 33.93 5.18
930 936 5.358922 TGTAACTTTAGTTTGTGTACCGCT 58.641 37.500 0.00 0.00 39.31 5.52
931 937 5.655893 TGTAACTTTAGTTTGTGTACCGC 57.344 39.130 0.00 0.00 39.31 5.68
932 938 7.237920 ACTTGTAACTTTAGTTTGTGTACCG 57.762 36.000 0.00 0.00 39.31 4.02
933 939 9.097257 TGTACTTGTAACTTTAGTTTGTGTACC 57.903 33.333 0.00 0.00 39.31 3.34
934 940 9.906111 GTGTACTTGTAACTTTAGTTTGTGTAC 57.094 33.333 0.00 9.50 39.31 2.90
935 941 9.650539 TGTGTACTTGTAACTTTAGTTTGTGTA 57.349 29.630 0.00 0.00 39.31 2.90
936 942 8.550710 TGTGTACTTGTAACTTTAGTTTGTGT 57.449 30.769 0.00 0.00 39.31 3.72
937 943 8.875803 TCTGTGTACTTGTAACTTTAGTTTGTG 58.124 33.333 0.00 0.00 39.31 3.33
938 944 9.609346 ATCTGTGTACTTGTAACTTTAGTTTGT 57.391 29.630 0.00 0.00 39.31 2.83
941 947 9.420551 GCTATCTGTGTACTTGTAACTTTAGTT 57.579 33.333 0.29 0.29 41.73 2.24
942 948 8.033626 GGCTATCTGTGTACTTGTAACTTTAGT 58.966 37.037 0.00 0.00 0.00 2.24
943 949 8.033038 TGGCTATCTGTGTACTTGTAACTTTAG 58.967 37.037 0.00 0.00 0.00 1.85
944 950 7.898918 TGGCTATCTGTGTACTTGTAACTTTA 58.101 34.615 0.00 0.00 0.00 1.85
945 951 6.765403 TGGCTATCTGTGTACTTGTAACTTT 58.235 36.000 0.00 0.00 0.00 2.66
946 952 6.354794 TGGCTATCTGTGTACTTGTAACTT 57.645 37.500 0.00 0.00 0.00 2.66
947 953 5.995565 TGGCTATCTGTGTACTTGTAACT 57.004 39.130 0.00 0.00 0.00 2.24
948 954 8.888579 ATAATGGCTATCTGTGTACTTGTAAC 57.111 34.615 0.00 0.00 0.00 2.50
949 955 8.148351 GGATAATGGCTATCTGTGTACTTGTAA 58.852 37.037 0.00 0.00 37.22 2.41
950 956 7.289084 TGGATAATGGCTATCTGTGTACTTGTA 59.711 37.037 0.00 0.00 37.22 2.41
951 957 6.099701 TGGATAATGGCTATCTGTGTACTTGT 59.900 38.462 0.00 0.00 37.22 3.16
952 958 6.524734 TGGATAATGGCTATCTGTGTACTTG 58.475 40.000 0.00 0.00 37.22 3.16
953 959 6.747414 TGGATAATGGCTATCTGTGTACTT 57.253 37.500 0.00 0.00 37.22 2.24
954 960 6.728164 AGATGGATAATGGCTATCTGTGTACT 59.272 38.462 0.00 0.00 37.22 2.73
955 961 6.940739 AGATGGATAATGGCTATCTGTGTAC 58.059 40.000 0.00 0.00 37.22 2.90
956 962 7.124298 GGTAGATGGATAATGGCTATCTGTGTA 59.876 40.741 0.00 0.00 37.22 2.90
957 963 6.070538 GGTAGATGGATAATGGCTATCTGTGT 60.071 42.308 0.00 0.00 37.22 3.72
958 964 6.155910 AGGTAGATGGATAATGGCTATCTGTG 59.844 42.308 0.00 0.00 37.22 3.66
959 965 6.267635 AGGTAGATGGATAATGGCTATCTGT 58.732 40.000 0.00 0.00 37.22 3.41
960 966 6.805016 AGGTAGATGGATAATGGCTATCTG 57.195 41.667 0.00 0.00 37.22 2.90
961 967 6.841755 GGTAGGTAGATGGATAATGGCTATCT 59.158 42.308 0.00 0.00 37.22 1.98
962 968 6.841755 AGGTAGGTAGATGGATAATGGCTATC 59.158 42.308 0.00 0.00 36.42 2.08
963 969 6.757317 AGGTAGGTAGATGGATAATGGCTAT 58.243 40.000 0.00 0.00 0.00 2.97
964 970 6.167061 AGGTAGGTAGATGGATAATGGCTA 57.833 41.667 0.00 0.00 0.00 3.93
965 971 5.029973 AGGTAGGTAGATGGATAATGGCT 57.970 43.478 0.00 0.00 0.00 4.75
966 972 5.958987 ACTAGGTAGGTAGATGGATAATGGC 59.041 44.000 0.00 0.00 0.00 4.40
967 973 6.608002 GGACTAGGTAGGTAGATGGATAATGG 59.392 46.154 0.00 0.00 0.00 3.16
968 974 6.608002 GGGACTAGGTAGGTAGATGGATAATG 59.392 46.154 0.00 0.00 0.00 1.90
969 975 6.580659 CGGGACTAGGTAGGTAGATGGATAAT 60.581 46.154 0.00 0.00 0.00 1.28
970 976 5.280882 CGGGACTAGGTAGGTAGATGGATAA 60.281 48.000 0.00 0.00 0.00 1.75
971 977 4.226846 CGGGACTAGGTAGGTAGATGGATA 59.773 50.000 0.00 0.00 0.00 2.59
972 978 3.010361 CGGGACTAGGTAGGTAGATGGAT 59.990 52.174 0.00 0.00 0.00 3.41
973 979 2.374504 CGGGACTAGGTAGGTAGATGGA 59.625 54.545 0.00 0.00 0.00 3.41
974 980 2.792878 CGGGACTAGGTAGGTAGATGG 58.207 57.143 0.00 0.00 0.00 3.51
975 981 2.161030 GCGGGACTAGGTAGGTAGATG 58.839 57.143 0.00 0.00 0.00 2.90
976 982 1.075212 GGCGGGACTAGGTAGGTAGAT 59.925 57.143 0.00 0.00 0.00 1.98
977 983 0.475906 GGCGGGACTAGGTAGGTAGA 59.524 60.000 0.00 0.00 0.00 2.59
978 984 0.888285 CGGCGGGACTAGGTAGGTAG 60.888 65.000 0.00 0.00 0.00 3.18
979 985 1.149174 CGGCGGGACTAGGTAGGTA 59.851 63.158 0.00 0.00 0.00 3.08
980 986 2.123982 CGGCGGGACTAGGTAGGT 60.124 66.667 0.00 0.00 0.00 3.08
981 987 2.123982 ACGGCGGGACTAGGTAGG 60.124 66.667 13.24 0.00 0.00 3.18
982 988 0.822532 ATCACGGCGGGACTAGGTAG 60.823 60.000 16.93 0.00 0.00 3.18
983 989 1.105167 CATCACGGCGGGACTAGGTA 61.105 60.000 16.93 0.00 0.00 3.08
984 990 2.043248 ATCACGGCGGGACTAGGT 60.043 61.111 16.93 0.00 0.00 3.08
985 991 2.417516 CATCACGGCGGGACTAGG 59.582 66.667 16.93 0.00 0.00 3.02
986 992 1.452953 TAGCATCACGGCGGGACTAG 61.453 60.000 16.93 9.08 39.27 2.57
987 993 1.038681 TTAGCATCACGGCGGGACTA 61.039 55.000 16.93 10.04 39.27 2.59
988 994 2.355986 TTAGCATCACGGCGGGACT 61.356 57.895 16.93 11.27 39.27 3.85
989 995 2.171725 GTTAGCATCACGGCGGGAC 61.172 63.158 16.93 1.78 39.27 4.46
990 996 2.185867 GTTAGCATCACGGCGGGA 59.814 61.111 16.90 16.90 39.27 5.14
991 997 2.895372 GGTTAGCATCACGGCGGG 60.895 66.667 13.24 7.61 39.27 6.13
992 998 2.125310 TGGTTAGCATCACGGCGG 60.125 61.111 13.24 0.00 39.27 6.13
993 999 3.398920 CTGGTTAGCATCACGGCG 58.601 61.111 4.80 4.80 39.27 6.46
1030 1036 0.390860 GGTACCGAGATCAGCAGCAT 59.609 55.000 0.00 0.00 0.00 3.79
1052 1061 4.530857 GATCCCCAGCGACCACCG 62.531 72.222 0.00 0.00 42.21 4.94
1074 1083 1.349627 GCAGTTCGGCATCGTCATG 59.650 57.895 0.00 0.00 37.69 3.07
1076 1085 0.673333 ATTGCAGTTCGGCATCGTCA 60.673 50.000 0.00 0.00 44.48 4.35
1206 1218 1.293498 GCTGCTTTCACCGAGGAGA 59.707 57.895 0.00 0.00 34.87 3.71
1236 1251 1.433879 GGAGATGTCGACCACCTCG 59.566 63.158 14.12 0.00 44.44 4.63
1242 1257 1.475403 TCTCAAGGGAGATGTCGACC 58.525 55.000 14.12 0.00 45.12 4.79
1257 1272 1.365999 ACGCATCGTGGTGTTCTCA 59.634 52.632 0.00 0.00 39.18 3.27
1275 1290 2.842462 ACTCCGTGGCTGGTGACA 60.842 61.111 5.61 0.00 39.59 3.58
1280 1295 4.320456 AGTGCACTCCGTGGCTGG 62.320 66.667 15.25 0.00 33.64 4.85
1297 1312 2.415491 CCGAGTCGCTCATGTTTACAGA 60.415 50.000 7.12 0.00 0.00 3.41
1299 1314 1.403647 CCCGAGTCGCTCATGTTTACA 60.404 52.381 7.12 0.00 0.00 2.41
1346 1361 1.369091 GATTGCATCGCCGTTGAGGT 61.369 55.000 0.00 0.00 43.70 3.85
1358 1373 2.275418 GGACCCCACCGATTGCAT 59.725 61.111 0.00 0.00 0.00 3.96
1361 1376 2.438434 GCAGGACCCCACCGATTG 60.438 66.667 0.00 0.00 34.73 2.67
1362 1377 3.728373 GGCAGGACCCCACCGATT 61.728 66.667 0.00 0.00 34.73 3.34
1365 1380 4.047125 ATTGGCAGGACCCCACCG 62.047 66.667 0.00 0.00 37.83 4.94
1368 1383 4.380945 GGCATTGGCAGGACCCCA 62.381 66.667 5.17 0.00 43.71 4.96
1374 1389 2.313317 AGAATGTATGGCATTGGCAGG 58.687 47.619 18.37 0.00 46.90 4.85
1381 1396 3.141398 CGCACCTAAGAATGTATGGCAT 58.859 45.455 4.88 4.88 40.03 4.40
1392 1407 0.387622 CGTTTCCGTCGCACCTAAGA 60.388 55.000 0.00 0.00 0.00 2.10
1395 1410 1.210931 CTCGTTTCCGTCGCACCTA 59.789 57.895 0.00 0.00 35.01 3.08
1396 1414 2.049433 CTCGTTTCCGTCGCACCT 60.049 61.111 0.00 0.00 35.01 4.00
1401 1419 1.140407 GGATGAGCTCGTTTCCGTCG 61.140 60.000 10.42 0.00 35.01 5.12
1405 1423 1.646189 GTGAGGATGAGCTCGTTTCC 58.354 55.000 17.93 17.93 0.00 3.13
1406 1424 1.272781 CGTGAGGATGAGCTCGTTTC 58.727 55.000 10.42 11.52 0.00 2.78
1438 1456 1.352156 CCGTTCAGCAGCGTAACCTC 61.352 60.000 7.17 0.00 0.00 3.85
1443 1461 2.571757 CTCCCGTTCAGCAGCGTA 59.428 61.111 0.00 0.00 0.00 4.42
1457 1475 3.397613 ATTCCTCCGCTGCTGCTCC 62.398 63.158 14.03 0.00 36.97 4.70
1460 1478 1.505477 GATGATTCCTCCGCTGCTGC 61.505 60.000 5.34 5.34 0.00 5.25
1462 1480 1.068753 CGATGATTCCTCCGCTGCT 59.931 57.895 0.00 0.00 0.00 4.24
1464 1482 2.398498 CTAACGATGATTCCTCCGCTG 58.602 52.381 0.00 0.00 0.00 5.18
1470 1488 0.753262 AGCCGCTAACGATGATTCCT 59.247 50.000 0.00 0.00 43.93 3.36
1473 1491 1.290203 CACAGCCGCTAACGATGATT 58.710 50.000 0.00 0.00 43.93 2.57
1475 1493 1.809619 GCACAGCCGCTAACGATGA 60.810 57.895 0.00 0.00 43.93 2.92
1476 1494 2.703409 GCACAGCCGCTAACGATG 59.297 61.111 0.00 0.00 43.93 3.84
1491 1509 1.004758 ATAGGGGCAGAAGGAGGCA 59.995 57.895 0.00 0.00 0.00 4.75
1504 1522 2.256591 GCATCTGCGTGCCATAGGG 61.257 63.158 0.00 0.00 39.18 3.53
1507 1525 0.811219 GTCTGCATCTGCGTGCCATA 60.811 55.000 6.15 0.00 44.43 2.74
1508 1526 2.110967 GTCTGCATCTGCGTGCCAT 61.111 57.895 6.15 0.00 44.43 4.40
1509 1527 2.743538 GTCTGCATCTGCGTGCCA 60.744 61.111 6.15 0.00 44.43 4.92
1511 1529 3.857854 CGGTCTGCATCTGCGTGC 61.858 66.667 0.00 2.00 45.83 5.34
1516 1534 2.163390 CGCTGTCGGTCTGCATCTG 61.163 63.158 5.18 0.00 40.30 2.90
1530 1548 3.104602 CTTGCCGATCTTGCCGCTG 62.105 63.158 2.13 0.00 0.00 5.18
1531 1549 2.599645 ATCTTGCCGATCTTGCCGCT 62.600 55.000 2.13 0.00 0.00 5.52
1539 1560 1.001406 CCTGTAGGGATCTTGCCGATC 59.999 57.143 4.89 4.89 46.37 3.69
1543 1570 1.070914 GTAGCCTGTAGGGATCTTGCC 59.929 57.143 0.00 0.00 37.23 4.52
1561 1615 1.153901 GCAAGCTGTAGGACGCGTA 60.154 57.895 13.97 0.00 0.00 4.42
1576 1630 0.601576 TCGAACCGCTTAAGCTGCAA 60.602 50.000 24.33 3.29 39.32 4.08
1579 1633 0.716108 CTGTCGAACCGCTTAAGCTG 59.284 55.000 24.33 20.32 39.32 4.24
1606 1660 1.005294 TTGTAACTTCTCGGCGTCGC 61.005 55.000 9.22 9.22 36.13 5.19
1610 1664 2.333926 TGTCATTGTAACTTCTCGGCG 58.666 47.619 0.00 0.00 0.00 6.46
1612 1666 4.503910 TCCATGTCATTGTAACTTCTCGG 58.496 43.478 0.00 0.00 0.00 4.63
1613 1667 5.410924 TCTCCATGTCATTGTAACTTCTCG 58.589 41.667 0.00 0.00 0.00 4.04
1619 1673 4.436050 CGTTGCTCTCCATGTCATTGTAAC 60.436 45.833 0.00 0.00 0.00 2.50
1620 1674 3.684305 CGTTGCTCTCCATGTCATTGTAA 59.316 43.478 0.00 0.00 0.00 2.41
1624 1678 2.079158 CACGTTGCTCTCCATGTCATT 58.921 47.619 0.00 0.00 0.00 2.57
1625 1679 1.676916 CCACGTTGCTCTCCATGTCAT 60.677 52.381 0.00 0.00 0.00 3.06
1626 1680 0.320683 CCACGTTGCTCTCCATGTCA 60.321 55.000 0.00 0.00 0.00 3.58
1630 1684 0.396435 TTCACCACGTTGCTCTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
1631 1685 0.531974 GTTCACCACGTTGCTCTCCA 60.532 55.000 0.00 0.00 0.00 3.86
1632 1686 1.557443 CGTTCACCACGTTGCTCTCC 61.557 60.000 0.00 0.00 44.49 3.71
1634 1688 4.027755 CGTTCACCACGTTGCTCT 57.972 55.556 0.00 0.00 44.49 4.09
1643 1697 1.965930 GCCATGAGCACGTTCACCA 60.966 57.895 0.00 0.00 42.97 4.17
1662 1716 1.002011 GTTGAGCCAACCCTCCTCC 60.002 63.158 6.76 0.00 38.30 4.30
1666 1720 4.285851 CTCGTTGAGCCAACCCTC 57.714 61.111 11.06 0.00 40.82 4.30
1681 1735 2.141517 CAGATGATTGATCCGGTGCTC 58.858 52.381 0.00 0.00 0.00 4.26
1684 1738 0.863799 CGCAGATGATTGATCCGGTG 59.136 55.000 0.00 0.00 0.00 4.94
1704 1758 3.702048 CTCCTCCCCACCGCGAAA 61.702 66.667 8.23 0.00 0.00 3.46
1705 1759 4.689549 TCTCCTCCCCACCGCGAA 62.690 66.667 8.23 0.00 0.00 4.70
1711 1765 2.312390 CTTAGTAGCTCTCCTCCCCAC 58.688 57.143 0.00 0.00 0.00 4.61
1744 1804 1.115467 ACCATCCAGTCGAGGATCAC 58.885 55.000 3.28 0.00 45.16 3.06
1749 1809 2.187946 GGCACCATCCAGTCGAGG 59.812 66.667 0.00 0.00 0.00 4.63
1753 1813 3.127533 GTGCGGCACCATCCAGTC 61.128 66.667 22.19 0.00 0.00 3.51
1773 1833 0.250295 TGTAGTCAGTTGGTGCTGCC 60.250 55.000 0.00 0.00 36.49 4.85
1782 1842 2.158682 TGCCCATGTGTTGTAGTCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
1789 1861 2.577490 GGCATGCCCATGTGTTGTA 58.423 52.632 27.24 0.00 40.80 2.41
1818 1890 0.616395 TCTTACAGATGGTCCGGGCA 60.616 55.000 9.07 0.00 0.00 5.36
1833 1905 3.111853 CACTGACTGTTGGTGCTCTTA 57.888 47.619 2.24 0.00 0.00 2.10
1848 1920 3.499537 CAGCTGTTTTATCTGTGCACTGA 59.500 43.478 25.98 25.98 0.00 3.41
1856 1928 7.875971 ACTTAAACCTTCAGCTGTTTTATCTG 58.124 34.615 14.67 8.98 36.23 2.90
1860 1932 6.262273 CAGGACTTAAACCTTCAGCTGTTTTA 59.738 38.462 14.67 10.33 36.23 1.52
1861 1933 5.067805 CAGGACTTAAACCTTCAGCTGTTTT 59.932 40.000 14.67 11.26 36.23 2.43
1863 1935 4.137543 CAGGACTTAAACCTTCAGCTGTT 58.862 43.478 14.67 2.42 35.35 3.16
1867 1939 4.390264 AGTTCAGGACTTAAACCTTCAGC 58.610 43.478 0.00 0.00 33.92 4.26
1870 1942 5.855045 TCTGAGTTCAGGACTTAAACCTTC 58.145 41.667 9.13 0.00 43.91 3.46
1872 1944 4.284746 CCTCTGAGTTCAGGACTTAAACCT 59.715 45.833 9.13 0.00 43.91 3.50
1873 1945 4.570930 CCTCTGAGTTCAGGACTTAAACC 58.429 47.826 9.13 0.00 43.91 3.27
1874 1946 3.997681 GCCTCTGAGTTCAGGACTTAAAC 59.002 47.826 9.13 0.00 43.91 2.01
1875 1947 3.904339 AGCCTCTGAGTTCAGGACTTAAA 59.096 43.478 9.13 0.00 43.91 1.52
1877 1949 3.176924 AGCCTCTGAGTTCAGGACTTA 57.823 47.619 9.13 0.00 43.91 2.24
1878 1950 2.022718 AGCCTCTGAGTTCAGGACTT 57.977 50.000 9.13 0.00 43.91 3.01
1880 1952 2.763448 ACATAGCCTCTGAGTTCAGGAC 59.237 50.000 9.13 0.19 43.91 3.85
1881 1953 3.107402 ACATAGCCTCTGAGTTCAGGA 57.893 47.619 9.13 0.00 43.91 3.86
1882 1954 3.902881 AACATAGCCTCTGAGTTCAGG 57.097 47.619 9.13 0.00 43.91 3.86
1883 1955 3.373439 GCAAACATAGCCTCTGAGTTCAG 59.627 47.826 3.66 2.69 45.08 3.02
1884 1956 3.338249 GCAAACATAGCCTCTGAGTTCA 58.662 45.455 3.66 0.00 0.00 3.18
1932 2037 3.458163 CCGCCGCTGAGGTAAGGA 61.458 66.667 0.00 0.00 43.70 3.36
1963 2068 2.628178 CAGGTGCTCCCGATAAGATGTA 59.372 50.000 0.00 0.00 38.74 2.29
1965 2070 1.414181 ACAGGTGCTCCCGATAAGATG 59.586 52.381 0.00 0.00 38.74 2.90
1966 2071 1.414181 CACAGGTGCTCCCGATAAGAT 59.586 52.381 0.00 0.00 38.74 2.40
1967 2072 0.824109 CACAGGTGCTCCCGATAAGA 59.176 55.000 0.00 0.00 38.74 2.10
1968 2073 3.369381 CACAGGTGCTCCCGATAAG 57.631 57.895 0.00 0.00 38.74 1.73
1983 2088 3.233980 AGGCACGACTGAGGCACA 61.234 61.111 0.00 0.00 33.61 4.57
1984 2089 2.740055 CAGGCACGACTGAGGCAC 60.740 66.667 0.00 0.00 40.97 5.01
1985 2090 2.917227 TCAGGCACGACTGAGGCA 60.917 61.111 0.00 0.00 42.26 4.75
2008 2113 5.787380 AGGAAATGGACTGAAAAGAAATGC 58.213 37.500 0.00 0.00 0.00 3.56
2014 2119 3.192212 GGCTGAGGAAATGGACTGAAAAG 59.808 47.826 0.00 0.00 0.00 2.27
2019 2124 0.036010 ACGGCTGAGGAAATGGACTG 60.036 55.000 0.00 0.00 0.00 3.51
2020 2125 1.568504 TACGGCTGAGGAAATGGACT 58.431 50.000 0.00 0.00 0.00 3.85
2021 2126 2.158957 TCATACGGCTGAGGAAATGGAC 60.159 50.000 0.00 0.00 0.00 4.02
2023 2128 2.620251 TCATACGGCTGAGGAAATGG 57.380 50.000 0.00 0.00 0.00 3.16
2024 2129 4.129380 TCAATCATACGGCTGAGGAAATG 58.871 43.478 0.00 0.00 0.00 2.32
2034 2183 4.299155 TCGAAATCTCTCAATCATACGGC 58.701 43.478 0.00 0.00 0.00 5.68
2035 2184 8.694975 ATAATCGAAATCTCTCAATCATACGG 57.305 34.615 0.00 0.00 0.00 4.02
2070 3035 4.451900 TCGCACTCTCTGATGTCTACATA 58.548 43.478 0.00 0.00 36.57 2.29
2078 3043 2.481903 TTCGATCGCACTCTCTGATG 57.518 50.000 11.09 0.00 0.00 3.07
2083 3048 4.647291 TTTTCTTTTCGATCGCACTCTC 57.353 40.909 11.09 0.00 0.00 3.20
2090 3055 5.003778 GCATCCATGTTTTTCTTTTCGATCG 59.996 40.000 9.36 9.36 0.00 3.69
2103 3068 1.812571 GTCACCGAAGCATCCATGTTT 59.187 47.619 0.00 0.00 33.80 2.83
2120 3085 2.104792 CCCTGGAAGTTCTTCACAGTCA 59.895 50.000 19.33 8.29 0.00 3.41
2126 3091 1.420430 ACGTCCCTGGAAGTTCTTCA 58.580 50.000 13.44 0.00 33.31 3.02
2138 3103 1.194781 ACTGGCATCTGAACGTCCCT 61.195 55.000 0.00 0.00 0.00 4.20
2144 3109 0.036732 TGGGACACTGGCATCTGAAC 59.963 55.000 0.00 0.00 0.00 3.18
2148 3113 4.659100 TCCCTATGGGACACTGGCATCT 62.659 54.545 0.42 0.00 46.17 2.90
2150 3115 0.327480 TCCCTATGGGACACTGGCAT 60.327 55.000 0.42 0.00 46.17 4.40
2164 3129 1.279025 GGGGTTGCCATCAGTCCCTA 61.279 60.000 0.00 0.00 37.89 3.53
2184 3149 4.124238 CCATATACCTGTGTTTACCGTGG 58.876 47.826 0.00 0.00 0.00 4.94
2186 3151 5.046448 TCAACCATATACCTGTGTTTACCGT 60.046 40.000 0.00 0.00 0.00 4.83
2187 3152 5.421277 TCAACCATATACCTGTGTTTACCG 58.579 41.667 0.00 0.00 0.00 4.02
2203 3193 3.693085 GACATGCAGTGATTCTCAACCAT 59.307 43.478 0.00 0.00 0.00 3.55
2204 3194 3.076621 GACATGCAGTGATTCTCAACCA 58.923 45.455 0.00 0.00 0.00 3.67
2206 3196 4.754372 TTGACATGCAGTGATTCTCAAC 57.246 40.909 0.00 0.00 0.00 3.18
2207 3197 5.970317 AATTGACATGCAGTGATTCTCAA 57.030 34.783 0.00 0.00 0.00 3.02
2208 3198 5.708697 AGAAATTGACATGCAGTGATTCTCA 59.291 36.000 0.00 0.00 0.00 3.27
2209 3199 6.192234 AGAAATTGACATGCAGTGATTCTC 57.808 37.500 0.00 0.00 0.00 2.87
2211 3201 7.647907 AAAAGAAATTGACATGCAGTGATTC 57.352 32.000 0.00 0.00 0.00 2.52
2213 3203 9.793252 GTATAAAAGAAATTGACATGCAGTGAT 57.207 29.630 0.00 0.00 0.00 3.06
2215 3205 8.969121 TGTATAAAAGAAATTGACATGCAGTG 57.031 30.769 0.00 0.00 0.00 3.66
2216 3206 9.577110 CATGTATAAAAGAAATTGACATGCAGT 57.423 29.630 0.00 0.00 37.11 4.40
2217 3207 9.577110 ACATGTATAAAAGAAATTGACATGCAG 57.423 29.630 11.03 0.00 44.06 4.41
2277 3627 5.250774 AGGGTTTATCAGGATGTAACTGTGT 59.749 40.000 0.00 0.00 37.25 3.72
2282 3632 6.415573 ACTCAAGGGTTTATCAGGATGTAAC 58.584 40.000 0.00 0.00 37.40 2.50
2283 3633 6.636454 ACTCAAGGGTTTATCAGGATGTAA 57.364 37.500 0.00 0.00 37.40 2.41
2285 3635 6.636454 TTACTCAAGGGTTTATCAGGATGT 57.364 37.500 0.00 0.00 37.40 3.06
2289 3639 8.850156 CCATATTTTACTCAAGGGTTTATCAGG 58.150 37.037 0.00 0.00 0.00 3.86
2290 3640 9.408648 ACCATATTTTACTCAAGGGTTTATCAG 57.591 33.333 0.00 0.00 0.00 2.90
2291 3641 9.184523 CACCATATTTTACTCAAGGGTTTATCA 57.815 33.333 0.00 0.00 0.00 2.15
2293 3643 8.966868 CACACCATATTTTACTCAAGGGTTTAT 58.033 33.333 0.00 0.00 0.00 1.40
2294 3644 7.945664 ACACACCATATTTTACTCAAGGGTTTA 59.054 33.333 0.00 0.00 0.00 2.01
2297 3647 5.887754 ACACACCATATTTTACTCAAGGGT 58.112 37.500 0.00 0.00 0.00 4.34
2298 3648 8.405531 CAATACACACCATATTTTACTCAAGGG 58.594 37.037 0.00 0.00 0.00 3.95
2299 3649 8.956426 ACAATACACACCATATTTTACTCAAGG 58.044 33.333 0.00 0.00 0.00 3.61
2343 3706 4.529377 GCCCAATGATTAATCCCATGTGAT 59.471 41.667 12.90 0.00 0.00 3.06
2348 3711 5.195940 CGATAGCCCAATGATTAATCCCAT 58.804 41.667 12.90 0.00 0.00 4.00
2365 3728 0.532196 GGCCACTACCAACCGATAGC 60.532 60.000 0.00 0.00 0.00 2.97
2376 3739 1.610554 TAGAACGCAGGGGCCACTAC 61.611 60.000 7.53 0.00 36.38 2.73
2386 3749 4.527564 CAAGAACCAAAAGTAGAACGCAG 58.472 43.478 0.00 0.00 0.00 5.18
2423 3786 0.948678 TGTTGCTTAAGTTCACGGGC 59.051 50.000 4.02 0.00 0.00 6.13
2458 3821 7.255486 CGGTTTTGAATAAAGAACTTCCTCCTT 60.255 37.037 0.00 0.00 0.00 3.36
2475 3838 1.096416 AAGTTGTCCGCGGTTTTGAA 58.904 45.000 27.15 8.90 0.00 2.69
2485 3848 4.867608 ACCAATTGTTTCAAAAGTTGTCCG 59.132 37.500 4.43 0.00 0.00 4.79
2494 3857 7.147915 GCCCTATGAGATACCAATTGTTTCAAA 60.148 37.037 4.43 0.00 0.00 2.69
2500 3863 4.660303 TCTGCCCTATGAGATACCAATTGT 59.340 41.667 4.43 0.00 0.00 2.71
2575 3938 3.724374 CCTACGGGCTTGATCGAAATTA 58.276 45.455 0.00 0.00 0.00 1.40
2617 3980 5.071788 TGACAAGATCCCTTTGTAGACAGTT 59.928 40.000 0.00 0.00 0.00 3.16
2656 4019 4.213513 GGATCCTTGATTTCTTGATGGCT 58.786 43.478 3.84 0.00 0.00 4.75
2673 4036 7.911651 TCTCTCAATATTCTTATGGTGGATCC 58.088 38.462 4.20 4.20 0.00 3.36
2692 4055 9.875691 TTAATGAATTCTTCGATTTCTCTCTCA 57.124 29.630 7.05 0.00 0.00 3.27
2707 4070 5.957842 TTGCAACCTCGTTAATGAATTCT 57.042 34.783 7.05 0.00 0.00 2.40
2710 4073 6.823689 AGAGTATTGCAACCTCGTTAATGAAT 59.176 34.615 17.63 0.57 0.00 2.57
2719 4082 2.926200 CTGTGAGAGTATTGCAACCTCG 59.074 50.000 17.63 4.62 0.00 4.63
2728 4091 6.841229 TCCTATGGTTGATCTGTGAGAGTATT 59.159 38.462 0.00 0.00 0.00 1.89
2786 4149 1.906574 AGCCAATAACGGGACTTCTGA 59.093 47.619 0.00 0.00 0.00 3.27
2797 4160 7.771183 TGGAAATGAACTCATAAGCCAATAAC 58.229 34.615 5.92 0.00 35.10 1.89
3013 4376 1.219393 CCTCGAGGCTCCAAAGTCC 59.781 63.158 20.67 0.00 0.00 3.85
3025 4388 6.915300 CAGTTTGATCTAGAATGTACCTCGAG 59.085 42.308 5.13 5.13 0.00 4.04
3058 4430 4.323417 CAATAGTTCCTTGCACCACAGTA 58.677 43.478 0.00 0.00 0.00 2.74
3121 4493 7.491372 CCAAAACTATAGACATCGCTACTTTCA 59.509 37.037 6.78 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.