Multiple sequence alignment - TraesCS7D01G001900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G001900 chr7D 100.000 7321 0 0 356 7676 1420150 1412830 0.000000e+00 13520.0
1 TraesCS7D01G001900 chr7D 89.091 330 34 2 3991 4320 236647749 236648076 7.170000e-110 409.0
2 TraesCS7D01G001900 chr7D 91.824 159 12 1 5812 5970 582198620 582198463 3.610000e-53 220.0
3 TraesCS7D01G001900 chr7D 84.277 159 25 0 5812 5970 95842595 95842753 1.030000e-33 156.0
4 TraesCS7D01G001900 chr7D 100.000 28 0 0 1 28 1420505 1420478 1.400000e-02 52.8
5 TraesCS7D01G001900 chr4A 95.720 1659 66 4 6021 7676 743868030 743869686 0.000000e+00 2665.0
6 TraesCS7D01G001900 chr4A 93.596 1702 73 18 5983 7676 742891908 742893581 0.000000e+00 2507.0
7 TraesCS7D01G001900 chr4A 92.771 996 51 8 941 1920 742890652 742891642 0.000000e+00 1421.0
8 TraesCS7D01G001900 chr4A 92.523 963 46 11 1015 1965 743866870 743867818 0.000000e+00 1356.0
9 TraesCS7D01G001900 chr4A 86.395 441 15 9 452 882 742890135 742890540 2.540000e-119 440.0
10 TraesCS7D01G001900 chr4A 88.690 336 34 4 3986 4320 83495579 83495911 2.580000e-109 407.0
11 TraesCS7D01G001900 chr4A 97.059 68 2 0 357 424 616411778 616411845 1.750000e-21 115.0
12 TraesCS7D01G001900 chr1A 96.209 1530 39 11 2016 3534 518406877 518405356 0.000000e+00 2486.0
13 TraesCS7D01G001900 chr1A 97.834 277 5 1 3563 3839 518405357 518405082 1.940000e-130 477.0
14 TraesCS7D01G001900 chr1A 94.545 110 6 0 5867 5976 518405082 518404973 3.680000e-38 171.0
15 TraesCS7D01G001900 chr1A 90.196 102 5 3 5694 5790 141724326 141724225 2.250000e-25 128.0
16 TraesCS7D01G001900 chrUn 93.176 1700 73 14 5987 7676 295470456 295472122 0.000000e+00 2457.0
17 TraesCS7D01G001900 chrUn 92.085 1036 51 21 936 1965 292914255 292915265 0.000000e+00 1430.0
18 TraesCS7D01G001900 chr1D 87.998 2008 175 27 2010 3990 264037879 264035911 0.000000e+00 2313.0
19 TraesCS7D01G001900 chr1D 92.025 163 12 1 5808 5970 264035912 264035751 2.150000e-55 228.0
20 TraesCS7D01G001900 chr1D 95.588 68 3 0 357 424 488544411 488544344 8.140000e-20 110.0
21 TraesCS7D01G001900 chr3D 88.255 1490 122 23 2528 3990 580215578 580217041 0.000000e+00 1733.0
22 TraesCS7D01G001900 chr3D 91.080 426 35 3 2106 2530 580214972 580215395 2.400000e-159 573.0
23 TraesCS7D01G001900 chr3D 88.955 335 34 3 3988 4322 154676886 154677217 1.990000e-110 411.0
24 TraesCS7D01G001900 chr3D 84.186 430 57 11 2047 2472 434378328 434378750 2.580000e-109 407.0
25 TraesCS7D01G001900 chr3D 95.706 163 7 0 5808 5970 580217040 580217202 5.910000e-66 263.0
26 TraesCS7D01G001900 chr4B 87.895 1487 148 22 2009 3482 110302746 110304213 0.000000e+00 1720.0
27 TraesCS7D01G001900 chr4B 100.000 37 0 0 4324 4360 181055824 181055788 1.380000e-07 69.4
28 TraesCS7D01G001900 chr6A 87.441 1481 153 22 2016 3482 7013349 7011888 0.000000e+00 1674.0
29 TraesCS7D01G001900 chr6A 86.635 1489 130 28 2528 3990 25695214 25693769 0.000000e+00 1583.0
30 TraesCS7D01G001900 chr6A 85.806 930 118 6 998 1926 557402224 557401308 0.000000e+00 974.0
31 TraesCS7D01G001900 chr6A 85.150 936 108 15 998 1924 557921315 557920402 0.000000e+00 929.0
32 TraesCS7D01G001900 chr6A 84.485 709 106 3 6050 6754 557792949 557792241 0.000000e+00 697.0
33 TraesCS7D01G001900 chr6A 90.716 517 43 5 2016 2530 25695911 25695398 0.000000e+00 684.0
34 TraesCS7D01G001900 chr6A 84.125 674 101 5 6075 6743 557365666 557364994 0.000000e+00 647.0
35 TraesCS7D01G001900 chr6A 82.837 705 115 4 6056 6754 557398597 557397893 1.820000e-175 627.0
36 TraesCS7D01G001900 chr6A 76.271 767 129 38 4743 5479 32878223 32878966 7.320000e-95 359.0
37 TraesCS7D01G001900 chr6A 95.706 163 7 0 5808 5970 25693770 25693608 5.910000e-66 263.0
38 TraesCS7D01G001900 chr6A 95.652 69 1 2 357 424 592186905 592186972 8.140000e-20 110.0
39 TraesCS7D01G001900 chr6B 86.315 928 110 6 998 1924 620283980 620283069 0.000000e+00 994.0
40 TraesCS7D01G001900 chr6B 85.614 709 98 3 6050 6754 620281941 620281233 0.000000e+00 741.0
41 TraesCS7D01G001900 chr6B 77.504 1338 203 56 4361 5647 183404198 183405488 0.000000e+00 713.0
42 TraesCS7D01G001900 chr6D 85.376 930 109 7 995 1924 412180331 412179429 0.000000e+00 939.0
43 TraesCS7D01G001900 chr6D 86.203 819 107 4 1115 1931 412010402 412009588 0.000000e+00 881.0
44 TraesCS7D01G001900 chr6D 83.974 936 120 14 998 1924 412626533 412627447 0.000000e+00 870.0
45 TraesCS7D01G001900 chr6D 86.286 700 92 3 6050 6745 412628585 412629284 0.000000e+00 758.0
46 TraesCS7D01G001900 chr6D 84.605 708 98 7 6050 6754 412178599 412177900 0.000000e+00 693.0
47 TraesCS7D01G001900 chr6D 88.889 333 35 2 3988 4320 436422646 436422976 7.170000e-110 409.0
48 TraesCS7D01G001900 chr5B 85.977 870 92 18 2016 2881 100348352 100349195 0.000000e+00 904.0
49 TraesCS7D01G001900 chr5B 87.000 500 47 11 2906 3397 100349191 100349680 1.460000e-151 547.0
50 TraesCS7D01G001900 chr5B 81.585 467 73 11 2015 2476 446118867 446118409 2.620000e-99 374.0
51 TraesCS7D01G001900 chr5A 88.287 572 52 13 4717 5280 532860852 532861416 0.000000e+00 671.0
52 TraesCS7D01G001900 chr5A 80.452 752 114 29 4958 5690 572531535 572530798 1.880000e-150 544.0
53 TraesCS7D01G001900 chr5A 92.492 333 23 2 3988 4320 532860138 532860468 6.970000e-130 475.0
54 TraesCS7D01G001900 chr5A 84.656 378 33 14 4360 4723 532860453 532860819 3.410000e-93 353.0
55 TraesCS7D01G001900 chr7A 79.149 940 155 34 4735 5655 676430720 676431637 5.090000e-171 612.0
56 TraesCS7D01G001900 chr7A 88.788 330 34 3 3991 4320 670705717 670706043 1.200000e-107 401.0
57 TraesCS7D01G001900 chr7A 95.588 68 3 0 357 424 16697805 16697872 8.140000e-20 110.0
58 TraesCS7D01G001900 chr7A 91.026 78 7 0 357 434 669548959 669549036 1.050000e-18 106.0
59 TraesCS7D01G001900 chr4D 76.947 976 143 52 4735 5689 117732278 117731364 1.500000e-131 481.0
60 TraesCS7D01G001900 chr3A 77.368 760 132 28 4743 5476 604276343 604277088 1.540000e-111 414.0
61 TraesCS7D01G001900 chr3A 88.724 337 36 2 3984 4320 199767546 199767880 1.990000e-110 411.0
62 TraesCS7D01G001900 chr2D 89.189 333 34 2 3988 4320 202843304 202843634 1.540000e-111 414.0
63 TraesCS7D01G001900 chr2D 83.421 380 51 10 4899 5273 145867649 145868021 7.380000e-90 342.0
64 TraesCS7D01G001900 chr2D 77.564 468 84 15 4759 5218 145742914 145743368 5.910000e-66 263.0
65 TraesCS7D01G001900 chr2A 87.679 349 41 2 3972 4320 656546281 656545935 9.280000e-109 405.0
66 TraesCS7D01G001900 chr2A 82.065 368 49 10 4361 4718 36000569 36000929 1.620000e-76 298.0
67 TraesCS7D01G001900 chr2A 89.109 101 7 4 5694 5790 526949266 526949166 1.050000e-23 122.0
68 TraesCS7D01G001900 chr2A 100.000 36 0 0 4326 4361 87464792 87464827 4.970000e-07 67.6
69 TraesCS7D01G001900 chr7B 78.947 475 68 16 4762 5228 658061674 658062124 2.090000e-75 294.0
70 TraesCS7D01G001900 chr7B 80.789 380 47 17 4361 4721 739548810 739549182 2.730000e-69 274.0
71 TraesCS7D01G001900 chr7B 80.208 384 46 17 4361 4721 735708252 735707876 2.120000e-65 261.0
72 TraesCS7D01G001900 chr7B 97.015 67 2 0 358 424 25880359 25880293 6.300000e-21 113.0
73 TraesCS7D01G001900 chr7B 95.652 69 3 0 357 425 439553880 439553948 2.260000e-20 111.0
74 TraesCS7D01G001900 chr3B 77.914 489 67 23 4899 5375 200174333 200174792 4.570000e-67 267.0
75 TraesCS7D01G001900 chr3B 84.516 155 17 7 5819 5972 759577454 759577602 6.210000e-31 147.0
76 TraesCS7D01G001900 chr3B 83.660 153 23 2 5819 5970 753022963 753022812 8.030000e-30 143.0
77 TraesCS7D01G001900 chr3B 82.099 162 25 4 5812 5970 217961573 217961413 1.340000e-27 135.0
78 TraesCS7D01G001900 chr3B 96.970 66 2 0 357 422 385088937 385088872 2.260000e-20 111.0
79 TraesCS7D01G001900 chr5D 91.358 81 5 2 357 437 377315096 377315174 8.140000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G001900 chr7D 1412830 1420505 7675 True 6786.400000 13520 100.000000 1 7676 2 chr7D.!!$R2 7675
1 TraesCS7D01G001900 chr4A 743866870 743869686 2816 False 2010.500000 2665 94.121500 1015 7676 2 chr4A.!!$F4 6661
2 TraesCS7D01G001900 chr4A 742890135 742893581 3446 False 1456.000000 2507 90.920667 452 7676 3 chr4A.!!$F3 7224
3 TraesCS7D01G001900 chr1A 518404973 518406877 1904 True 1044.666667 2486 96.196000 2016 5976 3 chr1A.!!$R2 3960
4 TraesCS7D01G001900 chrUn 295470456 295472122 1666 False 2457.000000 2457 93.176000 5987 7676 1 chrUn.!!$F2 1689
5 TraesCS7D01G001900 chrUn 292914255 292915265 1010 False 1430.000000 1430 92.085000 936 1965 1 chrUn.!!$F1 1029
6 TraesCS7D01G001900 chr1D 264035751 264037879 2128 True 1270.500000 2313 90.011500 2010 5970 2 chr1D.!!$R2 3960
7 TraesCS7D01G001900 chr3D 580214972 580217202 2230 False 856.333333 1733 91.680333 2106 5970 3 chr3D.!!$F3 3864
8 TraesCS7D01G001900 chr4B 110302746 110304213 1467 False 1720.000000 1720 87.895000 2009 3482 1 chr4B.!!$F1 1473
9 TraesCS7D01G001900 chr6A 7011888 7013349 1461 True 1674.000000 1674 87.441000 2016 3482 1 chr6A.!!$R1 1466
10 TraesCS7D01G001900 chr6A 557920402 557921315 913 True 929.000000 929 85.150000 998 1924 1 chr6A.!!$R4 926
11 TraesCS7D01G001900 chr6A 25693608 25695911 2303 True 843.333333 1583 91.019000 2016 5970 3 chr6A.!!$R5 3954
12 TraesCS7D01G001900 chr6A 557397893 557402224 4331 True 800.500000 974 84.321500 998 6754 2 chr6A.!!$R6 5756
13 TraesCS7D01G001900 chr6A 557792241 557792949 708 True 697.000000 697 84.485000 6050 6754 1 chr6A.!!$R3 704
14 TraesCS7D01G001900 chr6A 557364994 557365666 672 True 647.000000 647 84.125000 6075 6743 1 chr6A.!!$R2 668
15 TraesCS7D01G001900 chr6A 32878223 32878966 743 False 359.000000 359 76.271000 4743 5479 1 chr6A.!!$F1 736
16 TraesCS7D01G001900 chr6B 620281233 620283980 2747 True 867.500000 994 85.964500 998 6754 2 chr6B.!!$R1 5756
17 TraesCS7D01G001900 chr6B 183404198 183405488 1290 False 713.000000 713 77.504000 4361 5647 1 chr6B.!!$F1 1286
18 TraesCS7D01G001900 chr6D 412009588 412010402 814 True 881.000000 881 86.203000 1115 1931 1 chr6D.!!$R1 816
19 TraesCS7D01G001900 chr6D 412177900 412180331 2431 True 816.000000 939 84.990500 995 6754 2 chr6D.!!$R2 5759
20 TraesCS7D01G001900 chr6D 412626533 412629284 2751 False 814.000000 870 85.130000 998 6745 2 chr6D.!!$F2 5747
21 TraesCS7D01G001900 chr5B 100348352 100349680 1328 False 725.500000 904 86.488500 2016 3397 2 chr5B.!!$F1 1381
22 TraesCS7D01G001900 chr5A 572530798 572531535 737 True 544.000000 544 80.452000 4958 5690 1 chr5A.!!$R1 732
23 TraesCS7D01G001900 chr5A 532860138 532861416 1278 False 499.666667 671 88.478333 3988 5280 3 chr5A.!!$F1 1292
24 TraesCS7D01G001900 chr7A 676430720 676431637 917 False 612.000000 612 79.149000 4735 5655 1 chr7A.!!$F4 920
25 TraesCS7D01G001900 chr4D 117731364 117732278 914 True 481.000000 481 76.947000 4735 5689 1 chr4D.!!$R1 954
26 TraesCS7D01G001900 chr3A 604276343 604277088 745 False 414.000000 414 77.368000 4743 5476 1 chr3A.!!$F2 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 800 0.041663 GAGTTTTTGCACAGCGCGTA 60.042 50.000 8.43 0.00 46.97 4.42 F
792 803 0.316607 TTTTTGCACAGCGCGTACTG 60.317 50.000 8.43 10.30 46.97 2.74 F
798 809 0.451135 CACAGCGCGTACTGCTTTTC 60.451 55.000 8.43 0.00 41.72 2.29 F
1667 1759 1.463444 GGACCTGTCGTTGATTTTCGG 59.537 52.381 0.00 0.00 0.00 4.30 F
1714 1806 1.956620 GCTAGTTCGACTTGTGCCGC 61.957 60.000 0.00 0.00 0.00 6.53 F
1868 1984 3.359033 TCAGGATCCAAAAAGATGCCAG 58.641 45.455 15.82 0.00 35.34 4.85 F
1969 2086 3.566351 ACCAAGGCTTCATATTTAGGCC 58.434 45.455 0.00 0.00 42.74 5.19 F
3840 5050 0.674534 AGTACTACGGGCTAGCATGC 59.325 55.000 18.24 10.51 0.00 4.06 F
3917 5129 0.107654 GGAAGCTATCACCGTGCCTT 60.108 55.000 0.00 0.00 0.00 4.35 F
4342 5567 0.307760 CCGTGGAGTTGTTGCTTCAC 59.692 55.000 0.00 0.00 40.65 3.18 F
5772 7527 0.109723 TTAGGGAAACGCACCTTGCT 59.890 50.000 0.00 0.00 42.25 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1984 0.380024 GGTTAGGGAGACTCGCGTAC 59.620 60.000 13.32 14.01 34.19 3.67 R
2281 2582 4.698201 TTCTTTCACATGGTAGGTCACA 57.302 40.909 0.00 0.00 0.00 3.58 R
2400 2702 5.845065 AGGGGAAACTGTAAAAGTCTAGAGT 59.155 40.000 0.00 0.00 38.56 3.24 R
3070 4210 5.491070 TGAGAAGTGTGTATCAATTGAGGG 58.509 41.667 14.54 0.00 34.40 4.30 R
3532 4720 6.725246 AGGCAAAAATGTATAGATACAACGC 58.275 36.000 6.46 5.41 45.40 4.84 R
3550 4738 7.399245 ACGGATTATAAGCTAAAAAGGCAAA 57.601 32.000 0.02 0.00 0.00 3.68 R
3915 5127 1.004200 AAGGCACGTTACCCCGAAG 60.004 57.895 0.66 0.00 0.00 3.79 R
5665 7420 0.814010 ATTTCATACGTGGGCCGAGC 60.814 55.000 0.00 0.00 40.70 5.03 R
5752 7507 1.173913 GCAAGGTGCGTTTCCCTAAT 58.826 50.000 0.00 0.00 31.71 1.73 R
6107 8705 1.209261 TCGCCATTAGTTCAGCCATCA 59.791 47.619 0.00 0.00 0.00 3.07 R
6754 9363 2.078611 AGGGGTATTCTTGGGGTTTGT 58.921 47.619 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.537135 ACGCTGACTAGGATTCTTTTCA 57.463 40.909 0.00 0.00 0.00 2.69
22 23 5.091261 ACGCTGACTAGGATTCTTTTCAT 57.909 39.130 0.00 0.00 0.00 2.57
23 24 5.112686 ACGCTGACTAGGATTCTTTTCATC 58.887 41.667 0.00 0.00 0.00 2.92
24 25 4.509600 CGCTGACTAGGATTCTTTTCATCC 59.490 45.833 0.00 0.00 40.72 3.51
25 26 5.431765 GCTGACTAGGATTCTTTTCATCCA 58.568 41.667 1.89 0.00 42.63 3.41
26 27 5.295540 GCTGACTAGGATTCTTTTCATCCAC 59.704 44.000 1.89 0.00 42.63 4.02
27 28 6.627087 TGACTAGGATTCTTTTCATCCACT 57.373 37.500 1.89 0.00 42.63 4.00
385 386 8.885494 TTGACCAATCAAGTTAATCCTTTTTG 57.115 30.769 0.00 0.00 40.01 2.44
386 387 8.017418 TGACCAATCAAGTTAATCCTTTTTGT 57.983 30.769 0.00 0.00 0.00 2.83
387 388 9.137459 TGACCAATCAAGTTAATCCTTTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
388 389 9.974980 GACCAATCAAGTTAATCCTTTTTGTAA 57.025 29.630 0.00 0.00 0.00 2.41
401 402 9.811995 AATCCTTTTTGTAAAACCTTGTAACTC 57.188 29.630 0.00 0.00 0.00 3.01
402 403 7.474190 TCCTTTTTGTAAAACCTTGTAACTCG 58.526 34.615 0.00 0.00 0.00 4.18
403 404 7.121020 TCCTTTTTGTAAAACCTTGTAACTCGT 59.879 33.333 0.00 0.00 0.00 4.18
404 405 7.756272 CCTTTTTGTAAAACCTTGTAACTCGTT 59.244 33.333 0.00 0.00 0.00 3.85
405 406 9.131416 CTTTTTGTAAAACCTTGTAACTCGTTT 57.869 29.630 0.00 0.00 0.00 3.60
406 407 8.450385 TTTTGTAAAACCTTGTAACTCGTTTG 57.550 30.769 0.00 0.00 0.00 2.93
407 408 6.740411 TGTAAAACCTTGTAACTCGTTTGT 57.260 33.333 0.00 0.00 0.00 2.83
408 409 7.840342 TGTAAAACCTTGTAACTCGTTTGTA 57.160 32.000 0.00 0.00 0.00 2.41
409 410 7.683746 TGTAAAACCTTGTAACTCGTTTGTAC 58.316 34.615 0.00 0.00 0.00 2.90
423 424 5.109815 CGTTTGTACGTGTAGCATTACTC 57.890 43.478 0.00 0.00 42.72 2.59
424 425 4.618067 CGTTTGTACGTGTAGCATTACTCA 59.382 41.667 0.00 0.00 42.72 3.41
425 426 5.287752 CGTTTGTACGTGTAGCATTACTCAT 59.712 40.000 0.00 0.00 42.72 2.90
426 427 6.466812 GTTTGTACGTGTAGCATTACTCATG 58.533 40.000 0.00 0.00 35.73 3.07
427 428 5.570234 TGTACGTGTAGCATTACTCATGA 57.430 39.130 0.00 0.00 34.31 3.07
428 429 5.578776 TGTACGTGTAGCATTACTCATGAG 58.421 41.667 21.37 21.37 34.31 2.90
429 430 4.720649 ACGTGTAGCATTACTCATGAGT 57.279 40.909 30.11 30.11 45.02 3.41
430 431 5.073311 ACGTGTAGCATTACTCATGAGTT 57.927 39.130 32.14 16.98 42.54 3.01
431 432 6.203808 ACGTGTAGCATTACTCATGAGTTA 57.796 37.500 32.14 24.17 42.54 2.24
432 433 6.806751 ACGTGTAGCATTACTCATGAGTTAT 58.193 36.000 32.14 25.29 42.54 1.89
433 434 7.265673 ACGTGTAGCATTACTCATGAGTTATT 58.734 34.615 32.14 16.98 42.54 1.40
434 435 8.410912 ACGTGTAGCATTACTCATGAGTTATTA 58.589 33.333 32.14 16.02 42.54 0.98
435 436 8.691727 CGTGTAGCATTACTCATGAGTTATTAC 58.308 37.037 32.14 24.71 42.54 1.89
436 437 9.751542 GTGTAGCATTACTCATGAGTTATTACT 57.248 33.333 32.14 25.66 42.54 2.24
493 494 5.771666 CCCTATGACATTTGCAGGTTATGAT 59.228 40.000 0.00 0.00 0.00 2.45
494 495 6.072286 CCCTATGACATTTGCAGGTTATGATC 60.072 42.308 0.00 0.00 0.00 2.92
495 496 6.713903 CCTATGACATTTGCAGGTTATGATCT 59.286 38.462 0.00 0.00 0.00 2.75
496 497 7.879677 CCTATGACATTTGCAGGTTATGATCTA 59.120 37.037 0.00 0.00 0.00 1.98
497 498 6.925610 TGACATTTGCAGGTTATGATCTAC 57.074 37.500 0.00 0.00 0.00 2.59
498 499 6.653020 TGACATTTGCAGGTTATGATCTACT 58.347 36.000 0.00 0.00 0.00 2.57
499 500 7.791029 TGACATTTGCAGGTTATGATCTACTA 58.209 34.615 0.00 0.00 0.00 1.82
500 501 8.264347 TGACATTTGCAGGTTATGATCTACTAA 58.736 33.333 0.00 0.00 0.00 2.24
501 502 8.668510 ACATTTGCAGGTTATGATCTACTAAG 57.331 34.615 0.00 0.00 0.00 2.18
502 503 7.716998 ACATTTGCAGGTTATGATCTACTAAGG 59.283 37.037 0.00 0.00 0.00 2.69
503 504 7.432148 TTTGCAGGTTATGATCTACTAAGGA 57.568 36.000 0.00 0.00 0.00 3.36
504 505 7.618019 TTGCAGGTTATGATCTACTAAGGAT 57.382 36.000 0.00 0.00 0.00 3.24
505 506 8.721133 TTGCAGGTTATGATCTACTAAGGATA 57.279 34.615 0.00 0.00 0.00 2.59
506 507 8.354711 TGCAGGTTATGATCTACTAAGGATAG 57.645 38.462 0.00 0.00 35.14 2.08
507 508 7.093727 TGCAGGTTATGATCTACTAAGGATAGC 60.094 40.741 0.00 0.00 31.96 2.97
598 609 6.379386 GGCTTTAAGAACATCACCAAAGTAC 58.621 40.000 0.00 0.00 0.00 2.73
644 655 9.403583 AGAGTGTTCTGTTTATTAGGTTTTCAA 57.596 29.630 0.00 0.00 30.72 2.69
692 703 0.950555 TGTCCAATCTGAGCACGCAC 60.951 55.000 0.00 0.00 0.00 5.34
705 716 0.776451 CACGCACGTTGTACTCTCAC 59.224 55.000 0.00 0.00 0.00 3.51
775 786 2.495270 TGTTTGTGCACATGGTGAGTTT 59.505 40.909 22.39 0.00 35.23 2.66
776 787 3.056250 TGTTTGTGCACATGGTGAGTTTT 60.056 39.130 22.39 0.00 35.23 2.43
777 788 3.883830 TTGTGCACATGGTGAGTTTTT 57.116 38.095 22.39 0.00 35.23 1.94
778 789 3.162202 TGTGCACATGGTGAGTTTTTG 57.838 42.857 17.42 0.00 35.23 2.44
779 790 1.860326 GTGCACATGGTGAGTTTTTGC 59.140 47.619 13.17 0.00 35.23 3.68
780 791 1.479730 TGCACATGGTGAGTTTTTGCA 59.520 42.857 0.00 0.00 35.23 4.08
781 792 1.860326 GCACATGGTGAGTTTTTGCAC 59.140 47.619 0.00 0.00 35.23 4.57
782 793 2.738000 GCACATGGTGAGTTTTTGCACA 60.738 45.455 0.00 0.00 35.23 4.57
783 794 3.117794 CACATGGTGAGTTTTTGCACAG 58.882 45.455 0.00 0.00 35.23 3.66
784 795 2.129607 CATGGTGAGTTTTTGCACAGC 58.870 47.619 0.00 0.00 36.76 4.40
785 796 0.100325 TGGTGAGTTTTTGCACAGCG 59.900 50.000 0.00 0.00 36.76 5.18
786 797 1.208642 GGTGAGTTTTTGCACAGCGC 61.209 55.000 0.00 0.00 42.89 5.92
787 798 1.298264 TGAGTTTTTGCACAGCGCG 60.298 52.632 0.00 0.00 46.97 6.86
788 799 1.298339 GAGTTTTTGCACAGCGCGT 60.298 52.632 8.43 0.00 46.97 6.01
789 800 0.041663 GAGTTTTTGCACAGCGCGTA 60.042 50.000 8.43 0.00 46.97 4.42
790 801 0.316689 AGTTTTTGCACAGCGCGTAC 60.317 50.000 8.43 0.00 46.97 3.67
791 802 0.316689 GTTTTTGCACAGCGCGTACT 60.317 50.000 8.43 0.00 46.97 2.73
792 803 0.316607 TTTTTGCACAGCGCGTACTG 60.317 50.000 8.43 10.30 46.97 2.74
793 804 2.709629 TTTTGCACAGCGCGTACTGC 62.710 55.000 8.43 12.35 46.97 4.40
794 805 4.662961 TGCACAGCGCGTACTGCT 62.663 61.111 19.78 3.85 46.97 4.24
795 806 3.414700 GCACAGCGCGTACTGCTT 61.415 61.111 8.43 0.00 41.72 3.91
796 807 2.954753 GCACAGCGCGTACTGCTTT 61.955 57.895 8.43 0.00 41.72 3.51
797 808 1.569493 CACAGCGCGTACTGCTTTT 59.431 52.632 8.43 0.00 41.72 2.27
798 809 0.451135 CACAGCGCGTACTGCTTTTC 60.451 55.000 8.43 0.00 41.72 2.29
808 819 3.305335 CGTACTGCTTTTCCTTGCCAAAT 60.305 43.478 0.00 0.00 0.00 2.32
818 831 7.094677 GCTTTTCCTTGCCAAATGACATAATTT 60.095 33.333 0.00 0.00 0.00 1.82
951 1021 9.725019 TGATGGCTAGTATAAATAAATGGACAG 57.275 33.333 0.00 0.00 0.00 3.51
1179 1253 2.901840 CTGCACCACCTGTTGCGT 60.902 61.111 0.00 0.00 0.00 5.24
1645 1737 1.623311 TGAGGATCGTCAAGCAAGGAA 59.377 47.619 15.47 0.00 38.61 3.36
1658 1750 1.882352 GCAAGGAATGGACCTGTCGTT 60.882 52.381 0.00 0.00 40.49 3.85
1667 1759 1.463444 GGACCTGTCGTTGATTTTCGG 59.537 52.381 0.00 0.00 0.00 4.30
1714 1806 1.956620 GCTAGTTCGACTTGTGCCGC 61.957 60.000 0.00 0.00 0.00 6.53
1868 1984 3.359033 TCAGGATCCAAAAAGATGCCAG 58.641 45.455 15.82 0.00 35.34 4.85
1968 2085 4.402474 ACAACCAAGGCTTCATATTTAGGC 59.598 41.667 0.00 0.00 37.22 3.93
1969 2086 3.566351 ACCAAGGCTTCATATTTAGGCC 58.434 45.455 0.00 0.00 42.74 5.19
1974 2091 3.566351 GGCTTCATATTTAGGCCTGGTT 58.434 45.455 17.99 1.45 39.68 3.67
1975 2092 4.725490 GGCTTCATATTTAGGCCTGGTTA 58.275 43.478 17.99 4.03 39.68 2.85
2094 2395 7.041167 TGTCTTGATGATGTTACAAAAGTCAGG 60.041 37.037 0.00 0.00 0.00 3.86
2301 2602 4.698201 TTGTGACCTACCATGTGAAAGA 57.302 40.909 0.00 0.00 0.00 2.52
2400 2702 8.311836 CAAACTCCTATTCAACTGGACTTACTA 58.688 37.037 0.00 0.00 0.00 1.82
2429 2734 7.997773 AGACTTTTACAGTTTCCCCTTTATC 57.002 36.000 0.00 0.00 35.01 1.75
2916 4044 8.132362 TGCCAAATTTATTTTACTATAGCACCG 58.868 33.333 0.00 0.00 0.00 4.94
2950 4080 9.787532 GAAAAATAGCTTCTAACATATGCACAA 57.212 29.630 1.58 0.00 0.00 3.33
3319 4491 6.309737 GCGGAAAGAGAAAAACGTATCTAGAA 59.690 38.462 0.00 0.00 0.00 2.10
3329 4501 4.728917 ACGTATCTAGAATTCGAGACCG 57.271 45.455 24.78 24.78 34.20 4.79
3335 4507 5.926214 TCTAGAATTCGAGACCGTCTATG 57.074 43.478 13.59 0.00 37.05 2.23
3533 4721 9.339492 GGATCTGTAGTAGTAAATAATACGTGC 57.661 37.037 0.00 0.00 37.68 5.34
3534 4722 8.945758 ATCTGTAGTAGTAAATAATACGTGCG 57.054 34.615 0.00 0.00 37.68 5.34
3535 4723 7.919690 TCTGTAGTAGTAAATAATACGTGCGT 58.080 34.615 0.00 2.05 37.68 5.24
3536 4724 8.397906 TCTGTAGTAGTAAATAATACGTGCGTT 58.602 33.333 1.66 0.00 37.68 4.84
3537 4725 8.326599 TGTAGTAGTAAATAATACGTGCGTTG 57.673 34.615 1.66 0.00 37.68 4.10
3538 4726 7.967854 TGTAGTAGTAAATAATACGTGCGTTGT 59.032 33.333 1.66 0.00 37.68 3.32
3539 4727 9.433317 GTAGTAGTAAATAATACGTGCGTTGTA 57.567 33.333 1.66 0.00 32.51 2.41
3541 4729 9.173939 AGTAGTAAATAATACGTGCGTTGTATC 57.826 33.333 1.66 0.00 32.51 2.24
3542 4730 9.173939 GTAGTAAATAATACGTGCGTTGTATCT 57.826 33.333 1.66 0.00 31.49 1.98
3544 4732 9.903682 AGTAAATAATACGTGCGTTGTATCTAT 57.096 29.630 1.66 0.00 31.49 1.98
3547 4735 9.681692 AAATAATACGTGCGTTGTATCTATACA 57.318 29.630 1.66 0.00 41.19 2.29
3548 4736 9.850628 AATAATACGTGCGTTGTATCTATACAT 57.149 29.630 1.66 0.00 42.32 2.29
3549 4737 9.850628 ATAATACGTGCGTTGTATCTATACATT 57.149 29.630 1.66 0.00 42.32 2.71
3550 4738 8.583810 AATACGTGCGTTGTATCTATACATTT 57.416 30.769 1.66 0.00 42.32 2.32
3551 4739 6.897259 ACGTGCGTTGTATCTATACATTTT 57.103 33.333 3.75 0.00 42.32 1.82
3552 4740 7.298507 ACGTGCGTTGTATCTATACATTTTT 57.701 32.000 3.75 0.00 42.32 1.94
3553 4741 7.177407 ACGTGCGTTGTATCTATACATTTTTG 58.823 34.615 3.75 0.00 42.32 2.44
3554 4742 6.138546 CGTGCGTTGTATCTATACATTTTTGC 59.861 38.462 3.75 5.14 42.32 3.68
3555 4743 6.413818 GTGCGTTGTATCTATACATTTTTGCC 59.586 38.462 3.75 0.00 42.32 4.52
3556 4744 6.317642 TGCGTTGTATCTATACATTTTTGCCT 59.682 34.615 3.75 0.00 42.32 4.75
3557 4745 7.148154 TGCGTTGTATCTATACATTTTTGCCTT 60.148 33.333 3.75 0.00 42.32 4.35
3558 4746 7.700656 GCGTTGTATCTATACATTTTTGCCTTT 59.299 33.333 3.75 0.00 42.32 3.11
3559 4747 9.567848 CGTTGTATCTATACATTTTTGCCTTTT 57.432 29.630 3.75 0.00 42.32 2.27
3769 4979 4.154195 AGCGCTCCAATTTAAACTGTACAG 59.846 41.667 21.44 21.44 0.00 2.74
3838 5048 4.404640 TGATTAGTACTACGGGCTAGCAT 58.595 43.478 18.24 3.70 0.00 3.79
3840 5050 0.674534 AGTACTACGGGCTAGCATGC 59.325 55.000 18.24 10.51 0.00 4.06
3872 5084 2.879103 ATTGTATATGGCCTTCGGGG 57.121 50.000 3.32 0.00 35.16 5.73
3897 5109 7.040409 GGCTCATTAGGAAATTGAATCGGTAAT 60.040 37.037 0.00 0.00 0.00 1.89
3904 5116 5.067805 GGAAATTGAATCGGTAATGGAAGCT 59.932 40.000 0.00 0.00 0.00 3.74
3906 5118 7.040409 GGAAATTGAATCGGTAATGGAAGCTAT 60.040 37.037 0.00 0.00 0.00 2.97
3915 5127 0.179045 ATGGAAGCTATCACCGTGCC 60.179 55.000 0.00 0.00 0.00 5.01
3917 5129 0.107654 GGAAGCTATCACCGTGCCTT 60.108 55.000 0.00 0.00 0.00 4.35
3918 5130 1.291132 GAAGCTATCACCGTGCCTTC 58.709 55.000 0.00 0.40 0.00 3.46
3919 5131 0.460284 AAGCTATCACCGTGCCTTCG 60.460 55.000 0.00 0.00 0.00 3.79
3926 5138 2.435410 CCGTGCCTTCGGGGTAAC 60.435 66.667 4.51 0.00 45.88 2.50
3928 5140 2.344872 GTGCCTTCGGGGTAACGT 59.655 61.111 0.00 0.00 37.43 3.99
3929 5141 2.030958 GTGCCTTCGGGGTAACGTG 61.031 63.158 0.00 0.00 37.43 4.49
3930 5142 3.122971 GCCTTCGGGGTAACGTGC 61.123 66.667 0.00 0.00 37.43 5.34
3934 5159 1.296056 CTTCGGGGTAACGTGCCTTG 61.296 60.000 8.97 3.19 34.94 3.61
3960 5185 1.692411 ACATCCTGATCCGACATCGA 58.308 50.000 2.09 0.00 43.02 3.59
3962 5187 2.035193 ACATCCTGATCCGACATCGAAG 59.965 50.000 2.09 0.00 43.02 3.79
3970 5195 2.268298 TCCGACATCGAAGCTTTAAGC 58.732 47.619 9.18 9.18 43.02 3.09
4035 5260 8.001881 TGCAACGGGATAATAAAATTACATGT 57.998 30.769 2.69 2.69 0.00 3.21
4069 5294 4.664688 ATATGAATGGATCAAGACCCCC 57.335 45.455 0.00 0.00 42.54 5.40
4076 5301 1.408822 GGATCAAGACCCCCACATGTC 60.409 57.143 0.00 0.00 0.00 3.06
4077 5302 0.625849 ATCAAGACCCCCACATGTCC 59.374 55.000 0.00 0.00 31.76 4.02
4078 5303 1.377202 CAAGACCCCCACATGTCCG 60.377 63.158 0.00 0.00 31.76 4.79
4088 5313 3.243771 CCCCACATGTCCGTATTCTCTAC 60.244 52.174 0.00 0.00 0.00 2.59
4137 5362 5.949952 AGCCAAACCGGTATATTCTCTTTTT 59.050 36.000 8.00 0.00 36.97 1.94
4138 5363 6.033966 GCCAAACCGGTATATTCTCTTTTTG 58.966 40.000 8.00 3.64 36.97 2.44
4211 5436 8.978472 TCTGTTTTACTGGTACATAGAAGCTAT 58.022 33.333 0.00 0.00 38.20 2.97
4218 5443 6.327626 ACTGGTACATAGAAGCTATCACCATT 59.672 38.462 13.63 8.62 38.20 3.16
4253 5478 5.753921 GGTGTCCCTTATTCTGAATAAGTCG 59.246 44.000 32.37 25.49 45.67 4.18
4268 5493 3.589061 AAGTCGACTTAGCTCGATACG 57.411 47.619 28.80 0.00 44.21 3.06
4274 5499 0.309922 CTTAGCTCGATACGCCGGAA 59.690 55.000 5.05 0.00 0.00 4.30
4318 5543 2.479837 GTGATCAAACTCACGACCACA 58.520 47.619 0.00 0.00 36.50 4.17
4319 5544 2.869801 GTGATCAAACTCACGACCACAA 59.130 45.455 0.00 0.00 36.50 3.33
4320 5545 3.059597 GTGATCAAACTCACGACCACAAG 60.060 47.826 0.00 0.00 36.50 3.16
4321 5546 1.948104 TCAAACTCACGACCACAAGG 58.052 50.000 0.00 0.00 42.21 3.61
4322 5547 0.944386 CAAACTCACGACCACAAGGG 59.056 55.000 0.00 0.00 44.81 3.95
4323 5548 0.818040 AAACTCACGACCACAAGGGC 60.818 55.000 0.00 0.00 42.05 5.19
4324 5549 2.358737 CTCACGACCACAAGGGCC 60.359 66.667 0.00 0.00 41.31 5.80
4325 5550 4.308458 TCACGACCACAAGGGCCG 62.308 66.667 0.00 0.00 41.31 6.13
4326 5551 4.619227 CACGACCACAAGGGCCGT 62.619 66.667 0.00 0.00 41.31 5.68
4327 5552 4.619227 ACGACCACAAGGGCCGTG 62.619 66.667 18.29 18.29 41.31 4.94
4332 5557 2.113139 CACAAGGGCCGTGGAGTT 59.887 61.111 23.36 0.00 0.00 3.01
4333 5558 2.113139 ACAAGGGCCGTGGAGTTG 59.887 61.111 23.36 11.58 0.00 3.16
4334 5559 2.113139 CAAGGGCCGTGGAGTTGT 59.887 61.111 12.01 0.00 0.00 3.32
4335 5560 1.528309 CAAGGGCCGTGGAGTTGTT 60.528 57.895 12.01 0.00 0.00 2.83
4336 5561 1.528309 AAGGGCCGTGGAGTTGTTG 60.528 57.895 0.00 0.00 0.00 3.33
4337 5562 3.670377 GGGCCGTGGAGTTGTTGC 61.670 66.667 0.00 0.00 0.00 4.17
4338 5563 2.594592 GGCCGTGGAGTTGTTGCT 60.595 61.111 0.00 0.00 0.00 3.91
4339 5564 2.193536 GGCCGTGGAGTTGTTGCTT 61.194 57.895 0.00 0.00 0.00 3.91
4340 5565 1.282875 GCCGTGGAGTTGTTGCTTC 59.717 57.895 0.00 0.00 0.00 3.86
4341 5566 1.444119 GCCGTGGAGTTGTTGCTTCA 61.444 55.000 0.00 0.00 0.00 3.02
4342 5567 0.307760 CCGTGGAGTTGTTGCTTCAC 59.692 55.000 0.00 0.00 40.65 3.18
4343 5568 1.013596 CGTGGAGTTGTTGCTTCACA 58.986 50.000 5.50 0.00 43.43 3.58
4344 5569 1.003545 CGTGGAGTTGTTGCTTCACAG 60.004 52.381 5.50 0.00 43.43 3.66
4345 5570 2.017049 GTGGAGTTGTTGCTTCACAGT 58.983 47.619 0.07 0.00 42.92 3.55
4346 5571 3.202906 GTGGAGTTGTTGCTTCACAGTA 58.797 45.455 0.07 0.00 42.92 2.74
4347 5572 3.625764 GTGGAGTTGTTGCTTCACAGTAA 59.374 43.478 0.07 0.00 42.92 2.24
4348 5573 4.095782 GTGGAGTTGTTGCTTCACAGTAAA 59.904 41.667 0.07 0.00 42.92 2.01
4349 5574 4.887071 TGGAGTTGTTGCTTCACAGTAAAT 59.113 37.500 0.00 0.00 0.00 1.40
4350 5575 6.017440 GTGGAGTTGTTGCTTCACAGTAAATA 60.017 38.462 0.07 0.00 42.92 1.40
4351 5576 6.204688 TGGAGTTGTTGCTTCACAGTAAATAG 59.795 38.462 0.00 0.00 0.00 1.73
4352 5577 6.204882 GGAGTTGTTGCTTCACAGTAAATAGT 59.795 38.462 0.00 0.00 0.00 2.12
4353 5578 7.190920 AGTTGTTGCTTCACAGTAAATAGTC 57.809 36.000 0.00 0.00 0.00 2.59
4354 5579 6.765989 AGTTGTTGCTTCACAGTAAATAGTCA 59.234 34.615 0.00 0.00 0.00 3.41
4355 5580 7.282224 AGTTGTTGCTTCACAGTAAATAGTCAA 59.718 33.333 0.00 0.00 0.00 3.18
4356 5581 7.561021 TGTTGCTTCACAGTAAATAGTCAAA 57.439 32.000 0.00 0.00 0.00 2.69
4357 5582 7.990917 TGTTGCTTCACAGTAAATAGTCAAAA 58.009 30.769 0.00 0.00 0.00 2.44
4358 5583 8.462811 TGTTGCTTCACAGTAAATAGTCAAAAA 58.537 29.630 0.00 0.00 0.00 1.94
4380 5605 4.503714 AAACTCAAGACCTCAAAGACCA 57.496 40.909 0.00 0.00 0.00 4.02
4398 5623 2.774234 ACCAGACCATATGTTGCTAGCT 59.226 45.455 17.23 0.00 0.00 3.32
4413 5638 4.447290 TGCTAGCTACTCAAACAAACACA 58.553 39.130 17.23 0.00 0.00 3.72
4430 5655 1.406539 CACATCCTGCTAACCAATGGC 59.593 52.381 0.00 0.00 35.78 4.40
4435 5660 0.682209 CTGCTAACCAATGGCCAGCT 60.682 55.000 21.45 0.00 34.94 4.24
4480 5814 5.611200 GCAACGTCAAATTCGAAACATTTTG 59.389 36.000 13.35 13.35 0.00 2.44
4536 5873 4.083802 GCTATGAACTGACAAATATCGGCC 60.084 45.833 0.00 0.00 0.00 6.13
4552 5889 1.404477 GGCCACGTGAACAATTTTCG 58.596 50.000 19.30 0.00 0.00 3.46
4555 5892 2.719046 GCCACGTGAACAATTTTCGAAG 59.281 45.455 19.30 0.00 0.00 3.79
4565 5902 9.180678 GTGAACAATTTTCGAAGTTATGAACAT 57.819 29.630 0.00 0.00 0.00 2.71
4669 6016 9.906660 AAGCATGAACTTTTATGAAAATACGAA 57.093 25.926 0.00 0.00 0.00 3.85
5228 6934 9.889128 TTCAGAATTTTGGAACTCTTTTCAAAT 57.111 25.926 0.00 0.00 0.00 2.32
5229 6935 9.316730 TCAGAATTTTGGAACTCTTTTCAAATG 57.683 29.630 0.00 0.00 0.00 2.32
5230 6936 8.066000 CAGAATTTTGGAACTCTTTTCAAATGC 58.934 33.333 0.00 0.00 0.00 3.56
5557 7311 3.256960 GGTGGGCCAGTCTTGGGA 61.257 66.667 6.40 0.00 45.16 4.37
5569 7323 1.282157 GTCTTGGGAGCCCTGTATGTT 59.718 52.381 7.16 0.00 36.94 2.71
5570 7324 2.504175 GTCTTGGGAGCCCTGTATGTTA 59.496 50.000 7.16 0.00 36.94 2.41
5586 7340 6.399743 TGTATGTTACTCGAACTATTTGCCA 58.600 36.000 0.00 0.00 38.98 4.92
5606 7361 1.338769 ACAGTGTGCGGGAAATAGGAC 60.339 52.381 0.00 0.00 0.00 3.85
5659 7414 2.841442 AGCTGACTTTACTGGGTCAC 57.159 50.000 0.00 0.00 37.52 3.67
5660 7415 1.348036 AGCTGACTTTACTGGGTCACC 59.652 52.381 0.00 0.00 37.52 4.02
5661 7416 1.071699 GCTGACTTTACTGGGTCACCA 59.928 52.381 0.00 0.00 46.94 4.17
5665 7420 1.289109 CTTTACTGGGTCACCACGCG 61.289 60.000 3.53 3.53 43.37 6.01
5690 7445 1.065551 GCCCACGTATGAAATTCTGCC 59.934 52.381 0.00 0.00 0.00 4.85
5691 7446 1.676006 CCCACGTATGAAATTCTGCCC 59.324 52.381 0.00 0.00 0.00 5.36
5692 7447 1.676006 CCACGTATGAAATTCTGCCCC 59.324 52.381 0.00 0.00 0.00 5.80
5693 7448 2.643551 CACGTATGAAATTCTGCCCCT 58.356 47.619 0.00 0.00 0.00 4.79
5694 7449 3.433031 CCACGTATGAAATTCTGCCCCTA 60.433 47.826 0.00 0.00 0.00 3.53
5695 7450 3.560068 CACGTATGAAATTCTGCCCCTAC 59.440 47.826 0.00 0.00 0.00 3.18
5696 7451 3.199071 ACGTATGAAATTCTGCCCCTACA 59.801 43.478 0.00 0.00 0.00 2.74
5697 7452 4.196193 CGTATGAAATTCTGCCCCTACAA 58.804 43.478 0.00 0.00 0.00 2.41
5698 7453 4.638421 CGTATGAAATTCTGCCCCTACAAA 59.362 41.667 0.00 0.00 0.00 2.83
5699 7454 5.124776 CGTATGAAATTCTGCCCCTACAAAA 59.875 40.000 0.00 0.00 0.00 2.44
5700 7455 5.665916 ATGAAATTCTGCCCCTACAAAAG 57.334 39.130 0.00 0.00 0.00 2.27
5701 7456 4.479158 TGAAATTCTGCCCCTACAAAAGT 58.521 39.130 0.00 0.00 0.00 2.66
5702 7457 4.898861 TGAAATTCTGCCCCTACAAAAGTT 59.101 37.500 0.00 0.00 0.00 2.66
5703 7458 5.365314 TGAAATTCTGCCCCTACAAAAGTTT 59.635 36.000 0.00 0.00 0.00 2.66
5704 7459 6.551601 TGAAATTCTGCCCCTACAAAAGTTTA 59.448 34.615 0.00 0.00 0.00 2.01
5705 7460 6.590234 AATTCTGCCCCTACAAAAGTTTAG 57.410 37.500 0.00 0.00 0.00 1.85
5706 7461 4.717279 TCTGCCCCTACAAAAGTTTAGT 57.283 40.909 0.00 0.00 0.00 2.24
5707 7462 5.829062 TCTGCCCCTACAAAAGTTTAGTA 57.171 39.130 0.00 0.00 0.00 1.82
5708 7463 5.554070 TCTGCCCCTACAAAAGTTTAGTAC 58.446 41.667 0.00 0.00 0.00 2.73
5709 7464 4.654915 TGCCCCTACAAAAGTTTAGTACC 58.345 43.478 0.00 0.00 0.00 3.34
5710 7465 4.104420 TGCCCCTACAAAAGTTTAGTACCA 59.896 41.667 0.00 0.00 0.00 3.25
5711 7466 4.456911 GCCCCTACAAAAGTTTAGTACCAC 59.543 45.833 0.00 0.00 0.00 4.16
5712 7467 5.005740 CCCCTACAAAAGTTTAGTACCACC 58.994 45.833 0.00 0.00 0.00 4.61
5713 7468 5.221986 CCCCTACAAAAGTTTAGTACCACCT 60.222 44.000 0.00 0.00 0.00 4.00
5714 7469 5.936372 CCCTACAAAAGTTTAGTACCACCTC 59.064 44.000 0.00 0.00 0.00 3.85
5715 7470 5.636543 CCTACAAAAGTTTAGTACCACCTCG 59.363 44.000 0.00 0.00 0.00 4.63
5716 7471 5.027293 ACAAAAGTTTAGTACCACCTCGT 57.973 39.130 0.00 0.00 0.00 4.18
5717 7472 6.160576 ACAAAAGTTTAGTACCACCTCGTA 57.839 37.500 0.00 0.00 0.00 3.43
5718 7473 6.762333 ACAAAAGTTTAGTACCACCTCGTAT 58.238 36.000 0.00 0.00 0.00 3.06
5719 7474 7.895759 ACAAAAGTTTAGTACCACCTCGTATA 58.104 34.615 0.00 0.00 0.00 1.47
5720 7475 8.031277 ACAAAAGTTTAGTACCACCTCGTATAG 58.969 37.037 0.00 0.00 0.00 1.31
5721 7476 7.944729 AAAGTTTAGTACCACCTCGTATAGA 57.055 36.000 0.00 0.00 0.00 1.98
5722 7477 7.944729 AAGTTTAGTACCACCTCGTATAGAA 57.055 36.000 0.00 0.00 0.00 2.10
5723 7478 7.944729 AGTTTAGTACCACCTCGTATAGAAA 57.055 36.000 0.00 0.00 0.00 2.52
5724 7479 8.353423 AGTTTAGTACCACCTCGTATAGAAAA 57.647 34.615 0.00 0.00 0.00 2.29
5725 7480 8.806146 AGTTTAGTACCACCTCGTATAGAAAAA 58.194 33.333 0.00 0.00 0.00 1.94
5747 7502 5.410355 AAAAATCTGGTGGTGAATGGATG 57.590 39.130 0.00 0.00 0.00 3.51
5748 7503 4.320546 AAATCTGGTGGTGAATGGATGA 57.679 40.909 0.00 0.00 0.00 2.92
5749 7504 4.320546 AATCTGGTGGTGAATGGATGAA 57.679 40.909 0.00 0.00 0.00 2.57
5750 7505 3.805066 TCTGGTGGTGAATGGATGAAA 57.195 42.857 0.00 0.00 0.00 2.69
5751 7506 4.111255 TCTGGTGGTGAATGGATGAAAA 57.889 40.909 0.00 0.00 0.00 2.29
5752 7507 4.478203 TCTGGTGGTGAATGGATGAAAAA 58.522 39.130 0.00 0.00 0.00 1.94
5753 7508 5.085920 TCTGGTGGTGAATGGATGAAAAAT 58.914 37.500 0.00 0.00 0.00 1.82
5754 7509 5.543405 TCTGGTGGTGAATGGATGAAAAATT 59.457 36.000 0.00 0.00 0.00 1.82
5755 7510 6.723515 TCTGGTGGTGAATGGATGAAAAATTA 59.276 34.615 0.00 0.00 0.00 1.40
5756 7511 6.934056 TGGTGGTGAATGGATGAAAAATTAG 58.066 36.000 0.00 0.00 0.00 1.73
5757 7512 6.070881 TGGTGGTGAATGGATGAAAAATTAGG 60.071 38.462 0.00 0.00 0.00 2.69
5758 7513 6.340522 GTGGTGAATGGATGAAAAATTAGGG 58.659 40.000 0.00 0.00 0.00 3.53
5759 7514 6.154363 GTGGTGAATGGATGAAAAATTAGGGA 59.846 38.462 0.00 0.00 0.00 4.20
5760 7515 6.728164 TGGTGAATGGATGAAAAATTAGGGAA 59.272 34.615 0.00 0.00 0.00 3.97
5761 7516 7.236432 TGGTGAATGGATGAAAAATTAGGGAAA 59.764 33.333 0.00 0.00 0.00 3.13
5762 7517 7.549134 GGTGAATGGATGAAAAATTAGGGAAAC 59.451 37.037 0.00 0.00 0.00 2.78
5763 7518 7.275560 GTGAATGGATGAAAAATTAGGGAAACG 59.724 37.037 0.00 0.00 0.00 3.60
5764 7519 5.066968 TGGATGAAAAATTAGGGAAACGC 57.933 39.130 0.00 0.00 0.00 4.84
5765 7520 4.524714 TGGATGAAAAATTAGGGAAACGCA 59.475 37.500 0.00 0.00 0.00 5.24
5766 7521 4.862574 GGATGAAAAATTAGGGAAACGCAC 59.137 41.667 0.00 0.00 0.00 5.34
5767 7522 4.245845 TGAAAAATTAGGGAAACGCACC 57.754 40.909 0.00 0.00 0.00 5.01
5768 7523 3.892588 TGAAAAATTAGGGAAACGCACCT 59.107 39.130 0.00 0.00 40.89 4.00
5769 7524 4.342665 TGAAAAATTAGGGAAACGCACCTT 59.657 37.500 0.00 0.00 38.30 3.50
5770 7525 3.934457 AAATTAGGGAAACGCACCTTG 57.066 42.857 0.00 0.00 38.30 3.61
5771 7526 1.173913 ATTAGGGAAACGCACCTTGC 58.826 50.000 0.00 0.00 40.69 4.01
5772 7527 0.109723 TTAGGGAAACGCACCTTGCT 59.890 50.000 0.00 0.00 42.25 3.91
5773 7528 0.109723 TAGGGAAACGCACCTTGCTT 59.890 50.000 0.00 0.00 42.25 3.91
5774 7529 0.755327 AGGGAAACGCACCTTGCTTT 60.755 50.000 0.00 0.00 42.25 3.51
5775 7530 0.955905 GGGAAACGCACCTTGCTTTA 59.044 50.000 0.00 0.00 42.25 1.85
5776 7531 1.544246 GGGAAACGCACCTTGCTTTAT 59.456 47.619 0.00 0.00 42.25 1.40
5777 7532 2.029380 GGGAAACGCACCTTGCTTTATT 60.029 45.455 0.00 0.00 42.25 1.40
5778 7533 3.191791 GGGAAACGCACCTTGCTTTATTA 59.808 43.478 0.00 0.00 42.25 0.98
5779 7534 4.412207 GGAAACGCACCTTGCTTTATTAG 58.588 43.478 0.00 0.00 42.25 1.73
5780 7535 4.082949 GGAAACGCACCTTGCTTTATTAGT 60.083 41.667 0.00 0.00 42.25 2.24
5781 7536 5.122711 GGAAACGCACCTTGCTTTATTAGTA 59.877 40.000 0.00 0.00 42.25 1.82
5782 7537 5.796350 AACGCACCTTGCTTTATTAGTAG 57.204 39.130 0.00 0.00 42.25 2.57
5783 7538 4.189231 ACGCACCTTGCTTTATTAGTAGG 58.811 43.478 0.00 0.00 42.25 3.18
5784 7539 4.189231 CGCACCTTGCTTTATTAGTAGGT 58.811 43.478 0.00 0.00 42.25 3.08
5785 7540 5.105228 ACGCACCTTGCTTTATTAGTAGGTA 60.105 40.000 0.00 0.00 42.25 3.08
5786 7541 5.989777 CGCACCTTGCTTTATTAGTAGGTAT 59.010 40.000 0.00 0.00 42.25 2.73
5787 7542 7.149973 CGCACCTTGCTTTATTAGTAGGTATA 58.850 38.462 0.00 0.00 42.25 1.47
5788 7543 7.328737 CGCACCTTGCTTTATTAGTAGGTATAG 59.671 40.741 0.00 0.00 42.25 1.31
5789 7544 8.365647 GCACCTTGCTTTATTAGTAGGTATAGA 58.634 37.037 0.00 0.00 40.96 1.98
5831 7586 8.300286 AGATCTACGTGACAGTCCAATATATTG 58.700 37.037 17.11 17.11 37.52 1.90
5832 7587 6.213677 TCTACGTGACAGTCCAATATATTGC 58.786 40.000 18.40 7.33 36.48 3.56
5838 7593 7.359514 CGTGACAGTCCAATATATTGCTACATG 60.360 40.741 18.40 17.08 36.48 3.21
5998 7758 6.044046 ACGTCGCATATATCCTACTCTCTAG 58.956 44.000 0.00 0.00 0.00 2.43
6016 8612 8.476447 ACTCTCTAGTTAATAGTTTTACAGCCC 58.524 37.037 0.00 0.00 29.00 5.19
6095 8693 3.579709 CACTTGACACCACAGCTACTAG 58.420 50.000 0.00 0.00 0.00 2.57
6107 8705 4.402793 CACAGCTACTAGTCTACAATGGGT 59.597 45.833 0.00 0.00 0.00 4.51
6339 8937 4.422073 TGTACCATGAGGGATGATTGTC 57.578 45.455 0.00 0.00 41.15 3.18
6433 9031 1.150536 GAAGGTGAGGGTGTTGCCA 59.849 57.895 0.00 0.00 39.65 4.92
6482 9080 1.228124 CTTTCGGTGTTGGGAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
6670 9270 4.013728 TCCAATTATTCGTGTTCCCCTTG 58.986 43.478 0.00 0.00 0.00 3.61
6713 9316 9.601217 AAAACCACATGCTCTTACTATAAGTAG 57.399 33.333 0.00 0.00 31.47 2.57
6714 9317 6.750148 ACCACATGCTCTTACTATAAGTAGC 58.250 40.000 0.00 10.53 31.47 3.58
6718 9327 7.593273 CACATGCTCTTACTATAAGTAGCTCAC 59.407 40.741 15.03 0.00 31.47 3.51
6797 9406 2.702261 GCACCCCGTAGTTTTATGTGA 58.298 47.619 0.00 0.00 0.00 3.58
7004 9613 8.664992 TCTCCCAACCACTGCATTAATATAATA 58.335 33.333 0.00 0.00 0.00 0.98
7093 9702 9.689501 TTATTTATTGTTTATTCGGGGAGTTCT 57.310 29.630 0.00 0.00 0.00 3.01
7376 9987 7.643764 TGCGAACAAGACAGAAAATTTTCTAAG 59.356 33.333 28.40 20.62 45.23 2.18
7406 10017 9.696917 GGTATTTCTAAATGCTTTAATGATGGG 57.303 33.333 3.98 0.00 32.50 4.00
7409 10020 8.593945 TTTCTAAATGCTTTAATGATGGGAGT 57.406 30.769 0.00 0.00 0.00 3.85
7410 10021 7.572523 TCTAAATGCTTTAATGATGGGAGTG 57.427 36.000 0.00 0.00 0.00 3.51
7411 10022 4.660789 AATGCTTTAATGATGGGAGTGC 57.339 40.909 0.00 0.00 0.00 4.40
7412 10023 2.378038 TGCTTTAATGATGGGAGTGCC 58.622 47.619 0.00 0.00 0.00 5.01
7583 10219 7.770897 ACACAAAAATGGTTTATGGCAAACTTA 59.229 29.630 0.00 0.00 0.00 2.24
7652 10424 6.682746 TGCTTATGGCGAACTAAATTCAAAA 58.317 32.000 0.00 0.00 45.43 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.509600 GGATGAAAAGAATCCTAGTCAGCG 59.490 45.833 0.00 0.00 40.50 5.18
2 3 5.295540 GTGGATGAAAAGAATCCTAGTCAGC 59.704 44.000 4.23 0.00 43.52 4.26
355 356 6.547510 AGGATTAACTTGATTGGTCAATAGGC 59.452 38.462 0.00 0.00 43.08 3.93
356 357 8.525290 AAGGATTAACTTGATTGGTCAATAGG 57.475 34.615 0.00 0.00 43.08 2.57
359 360 9.492973 CAAAAAGGATTAACTTGATTGGTCAAT 57.507 29.630 0.00 0.00 43.08 2.57
360 361 8.482128 ACAAAAAGGATTAACTTGATTGGTCAA 58.518 29.630 0.00 0.00 41.89 3.18
361 362 8.017418 ACAAAAAGGATTAACTTGATTGGTCA 57.983 30.769 0.00 0.00 34.75 4.02
362 363 9.974980 TTACAAAAAGGATTAACTTGATTGGTC 57.025 29.630 0.00 0.00 34.75 4.02
375 376 9.811995 GAGTTACAAGGTTTTACAAAAAGGATT 57.188 29.630 0.00 0.00 0.00 3.01
376 377 8.132995 CGAGTTACAAGGTTTTACAAAAAGGAT 58.867 33.333 0.00 0.00 0.00 3.24
377 378 7.121020 ACGAGTTACAAGGTTTTACAAAAAGGA 59.879 33.333 0.00 0.00 0.00 3.36
378 379 7.252708 ACGAGTTACAAGGTTTTACAAAAAGG 58.747 34.615 0.00 0.00 0.00 3.11
379 380 8.677871 AACGAGTTACAAGGTTTTACAAAAAG 57.322 30.769 0.00 0.00 0.00 2.27
380 381 8.913656 CAAACGAGTTACAAGGTTTTACAAAAA 58.086 29.630 0.00 0.00 30.73 1.94
381 382 8.081025 ACAAACGAGTTACAAGGTTTTACAAAA 58.919 29.630 0.00 0.00 30.73 2.44
382 383 7.592051 ACAAACGAGTTACAAGGTTTTACAAA 58.408 30.769 0.00 0.00 30.73 2.83
383 384 7.143514 ACAAACGAGTTACAAGGTTTTACAA 57.856 32.000 0.00 0.00 30.73 2.41
384 385 6.740411 ACAAACGAGTTACAAGGTTTTACA 57.260 33.333 0.00 0.00 30.73 2.41
401 402 8.772272 TCATGAGTAATGCTACACGTACAAACG 61.772 40.741 0.00 0.00 44.38 3.60
402 403 6.309494 TCATGAGTAATGCTACACGTACAAAC 59.691 38.462 0.00 0.00 36.11 2.93
403 404 6.391537 TCATGAGTAATGCTACACGTACAAA 58.608 36.000 0.00 0.00 36.11 2.83
404 405 5.956642 TCATGAGTAATGCTACACGTACAA 58.043 37.500 0.00 0.00 36.11 2.41
405 406 5.124936 ACTCATGAGTAATGCTACACGTACA 59.875 40.000 26.87 0.00 40.43 2.90
406 407 5.579718 ACTCATGAGTAATGCTACACGTAC 58.420 41.667 26.87 0.00 40.43 3.67
407 408 5.830000 ACTCATGAGTAATGCTACACGTA 57.170 39.130 26.87 0.00 40.43 3.57
408 409 4.720649 ACTCATGAGTAATGCTACACGT 57.279 40.909 26.87 0.00 40.43 4.49
409 410 7.700322 AATAACTCATGAGTAATGCTACACG 57.300 36.000 28.10 0.00 41.58 4.49
410 411 9.751542 AGTAATAACTCATGAGTAATGCTACAC 57.248 33.333 28.10 16.08 41.58 2.90
434 435 9.847224 CCCAACTAAACTGGATATATTGTTAGT 57.153 33.333 0.00 0.00 35.85 2.24
435 436 8.784043 GCCCAACTAAACTGGATATATTGTTAG 58.216 37.037 0.00 0.00 35.85 2.34
436 437 8.499406 AGCCCAACTAAACTGGATATATTGTTA 58.501 33.333 0.00 0.00 35.85 2.41
437 438 7.354312 AGCCCAACTAAACTGGATATATTGTT 58.646 34.615 0.00 0.00 35.85 2.83
438 439 6.911308 AGCCCAACTAAACTGGATATATTGT 58.089 36.000 0.00 0.00 35.85 2.71
439 440 7.823745 AAGCCCAACTAAACTGGATATATTG 57.176 36.000 0.00 0.00 35.85 1.90
440 441 9.930158 TTTAAGCCCAACTAAACTGGATATATT 57.070 29.630 0.00 0.00 35.85 1.28
441 442 9.574516 CTTTAAGCCCAACTAAACTGGATATAT 57.425 33.333 0.00 0.00 35.85 0.86
442 443 7.501225 GCTTTAAGCCCAACTAAACTGGATATA 59.499 37.037 5.52 0.00 35.85 0.86
443 444 6.321435 GCTTTAAGCCCAACTAAACTGGATAT 59.679 38.462 5.52 0.00 35.85 1.63
444 445 5.650703 GCTTTAAGCCCAACTAAACTGGATA 59.349 40.000 5.52 0.00 35.85 2.59
445 446 4.462834 GCTTTAAGCCCAACTAAACTGGAT 59.537 41.667 5.52 0.00 35.85 3.41
446 447 3.824443 GCTTTAAGCCCAACTAAACTGGA 59.176 43.478 5.52 0.00 35.85 3.86
447 448 4.174411 GCTTTAAGCCCAACTAAACTGG 57.826 45.455 5.52 0.00 34.48 4.00
469 470 5.132502 TCATAACCTGCAAATGTCATAGGG 58.867 41.667 4.70 0.00 32.81 3.53
470 471 6.713903 AGATCATAACCTGCAAATGTCATAGG 59.286 38.462 0.00 0.00 34.70 2.57
493 494 6.464465 GCATGGGAAAAGCTATCCTTAGTAGA 60.464 42.308 15.88 0.00 37.14 2.59
494 495 5.703130 GCATGGGAAAAGCTATCCTTAGTAG 59.297 44.000 15.88 4.77 37.14 2.57
495 496 5.456186 GGCATGGGAAAAGCTATCCTTAGTA 60.456 44.000 15.88 2.09 37.14 1.82
496 497 4.464947 GCATGGGAAAAGCTATCCTTAGT 58.535 43.478 15.88 0.89 37.14 2.24
497 498 3.823304 GGCATGGGAAAAGCTATCCTTAG 59.177 47.826 15.88 8.53 37.14 2.18
498 499 3.463329 AGGCATGGGAAAAGCTATCCTTA 59.537 43.478 15.88 7.97 37.14 2.69
499 500 2.245806 AGGCATGGGAAAAGCTATCCTT 59.754 45.455 15.88 4.24 37.14 3.36
500 501 1.855599 AGGCATGGGAAAAGCTATCCT 59.144 47.619 15.88 0.00 37.14 3.24
501 502 2.371658 AGGCATGGGAAAAGCTATCC 57.628 50.000 9.50 9.50 36.16 2.59
502 503 3.560105 AGAAGGCATGGGAAAAGCTATC 58.440 45.455 0.00 0.00 0.00 2.08
503 504 3.677156 AGAAGGCATGGGAAAAGCTAT 57.323 42.857 0.00 0.00 0.00 2.97
504 505 3.456380 AAGAAGGCATGGGAAAAGCTA 57.544 42.857 0.00 0.00 0.00 3.32
505 506 2.315720 AAGAAGGCATGGGAAAAGCT 57.684 45.000 0.00 0.00 0.00 3.74
506 507 3.407424 AAAAGAAGGCATGGGAAAAGC 57.593 42.857 0.00 0.00 0.00 3.51
507 508 4.707105 ACAAAAAGAAGGCATGGGAAAAG 58.293 39.130 0.00 0.00 0.00 2.27
570 581 4.415596 TGGTGATGTTCTTAAAGCCCAAT 58.584 39.130 0.00 0.00 0.00 3.16
575 586 7.203255 AGTACTTTGGTGATGTTCTTAAAGC 57.797 36.000 0.00 0.00 0.00 3.51
598 609 9.003658 ACACTCTTTATGTAGAACATGGAAAAG 57.996 33.333 0.00 5.42 39.53 2.27
644 655 4.837860 TCAAAGGAGCATACCCACAAAAAT 59.162 37.500 0.00 0.00 0.00 1.82
651 662 5.192927 CAATTACTCAAAGGAGCATACCCA 58.807 41.667 0.00 0.00 45.42 4.51
692 703 4.377431 GCAATCAAAGGTGAGAGTACAACG 60.377 45.833 0.00 0.00 37.14 4.10
775 786 2.935191 CAGTACGCGCTGTGCAAA 59.065 55.556 14.19 0.00 46.97 3.68
776 787 3.711842 GCAGTACGCGCTGTGCAA 61.712 61.111 18.92 0.00 46.97 4.08
785 796 0.109735 GGCAAGGAAAAGCAGTACGC 60.110 55.000 2.08 2.08 42.91 4.42
786 797 1.234821 TGGCAAGGAAAAGCAGTACG 58.765 50.000 0.00 0.00 0.00 3.67
787 798 3.726291 TTTGGCAAGGAAAAGCAGTAC 57.274 42.857 0.00 0.00 0.00 2.73
788 799 3.894427 TCATTTGGCAAGGAAAAGCAGTA 59.106 39.130 0.00 0.00 0.00 2.74
789 800 2.699846 TCATTTGGCAAGGAAAAGCAGT 59.300 40.909 0.00 0.00 0.00 4.40
790 801 3.062042 GTCATTTGGCAAGGAAAAGCAG 58.938 45.455 0.00 0.00 0.00 4.24
791 802 2.433604 TGTCATTTGGCAAGGAAAAGCA 59.566 40.909 0.00 0.00 0.00 3.91
792 803 3.110447 TGTCATTTGGCAAGGAAAAGC 57.890 42.857 0.00 0.00 0.00 3.51
793 804 7.910441 AATTATGTCATTTGGCAAGGAAAAG 57.090 32.000 0.00 0.00 31.21 2.27
794 805 9.956640 ATAAATTATGTCATTTGGCAAGGAAAA 57.043 25.926 0.00 0.00 31.21 2.29
795 806 9.956640 AATAAATTATGTCATTTGGCAAGGAAA 57.043 25.926 0.00 0.00 31.21 3.13
796 807 9.956640 AAATAAATTATGTCATTTGGCAAGGAA 57.043 25.926 0.00 0.00 31.21 3.36
797 808 9.956640 AAAATAAATTATGTCATTTGGCAAGGA 57.043 25.926 0.00 0.00 31.21 3.36
891 904 9.614792 AAACATGTGTAGAAACTTTTAGAGAGT 57.385 29.630 0.00 0.00 0.00 3.24
927 955 7.611855 GCCTGTCCATTTATTTATACTAGCCAT 59.388 37.037 0.00 0.00 0.00 4.40
928 956 6.940298 GCCTGTCCATTTATTTATACTAGCCA 59.060 38.462 0.00 0.00 0.00 4.75
929 957 7.168905 AGCCTGTCCATTTATTTATACTAGCC 58.831 38.462 0.00 0.00 0.00 3.93
951 1021 0.179124 CAGACTAGCAGACCGAAGCC 60.179 60.000 0.00 0.00 0.00 4.35
1179 1253 2.858476 ATGTGGTGTGGGAGCCCA 60.858 61.111 3.58 3.58 45.02 5.36
1374 1451 1.226888 GTAGGGCGCGAAGACGATT 60.227 57.895 12.10 0.00 42.66 3.34
1447 1524 2.184322 GAATGCCTCGACTCGCCA 59.816 61.111 0.00 0.00 0.00 5.69
1461 1538 3.195591 CTCGCGGATCCGTCGGAAT 62.196 63.158 34.17 7.00 42.09 3.01
1557 1649 0.109689 CCGAGTCTGTCACGAACTCC 60.110 60.000 4.29 0.00 32.20 3.85
1645 1737 2.742053 CGAAAATCAACGACAGGTCCAT 59.258 45.455 0.00 0.00 0.00 3.41
1868 1984 0.380024 GGTTAGGGAGACTCGCGTAC 59.620 60.000 13.32 14.01 34.19 3.67
1968 2085 9.220767 GTTTCTTAGATGGCTATAATAACCAGG 57.779 37.037 0.00 0.00 36.78 4.45
1969 2086 9.778741 TGTTTCTTAGATGGCTATAATAACCAG 57.221 33.333 0.00 0.00 36.78 4.00
1974 2091 9.692749 CGAGTTGTTTCTTAGATGGCTATAATA 57.307 33.333 0.00 0.00 0.00 0.98
1975 2092 8.204836 ACGAGTTGTTTCTTAGATGGCTATAAT 58.795 33.333 0.00 0.00 0.00 1.28
1999 2300 6.691818 CCCGCTAGTTATAATAAGATAGCACG 59.308 42.308 10.52 0.00 36.32 5.34
2281 2582 4.698201 TTCTTTCACATGGTAGGTCACA 57.302 40.909 0.00 0.00 0.00 3.58
2400 2702 5.845065 AGGGGAAACTGTAAAAGTCTAGAGT 59.155 40.000 0.00 0.00 38.56 3.24
2498 2803 9.209175 CCACATAAACTAGATAATCTGCCTTAC 57.791 37.037 0.00 0.00 0.00 2.34
2501 2806 7.618019 TCCACATAAACTAGATAATCTGCCT 57.382 36.000 0.00 0.00 0.00 4.75
3070 4210 5.491070 TGAGAAGTGTGTATCAATTGAGGG 58.509 41.667 14.54 0.00 34.40 4.30
3319 4491 8.789825 ATATAAGTACATAGACGGTCTCGAAT 57.210 34.615 15.05 0.00 40.11 3.34
3322 4494 8.593842 CACTATATAAGTACATAGACGGTCTCG 58.406 40.741 15.05 9.78 35.76 4.04
3526 4714 8.583810 AAAATGTATAGATACAACGCACGTAT 57.416 30.769 6.46 0.00 45.40 3.06
3532 4720 6.725246 AGGCAAAAATGTATAGATACAACGC 58.275 36.000 6.46 5.41 45.40 4.84
3533 4721 9.567848 AAAAGGCAAAAATGTATAGATACAACG 57.432 29.630 6.46 0.00 45.40 4.10
3547 4735 9.313118 CGGATTATAAGCTAAAAAGGCAAAAAT 57.687 29.630 0.02 0.00 0.00 1.82
3548 4736 8.308207 ACGGATTATAAGCTAAAAAGGCAAAAA 58.692 29.630 0.02 0.00 0.00 1.94
3549 4737 7.832769 ACGGATTATAAGCTAAAAAGGCAAAA 58.167 30.769 0.02 0.00 0.00 2.44
3550 4738 7.399245 ACGGATTATAAGCTAAAAAGGCAAA 57.601 32.000 0.02 0.00 0.00 3.68
3551 4739 7.988599 TCTACGGATTATAAGCTAAAAAGGCAA 59.011 33.333 0.02 0.00 0.00 4.52
3552 4740 7.502696 TCTACGGATTATAAGCTAAAAAGGCA 58.497 34.615 0.02 0.00 0.00 4.75
3553 4741 7.958053 TCTACGGATTATAAGCTAAAAAGGC 57.042 36.000 0.02 0.00 0.00 4.35
3769 4979 9.546909 GCACATGCATGTATATGAATTAACTAC 57.453 33.333 30.92 0.63 39.39 2.73
3872 5084 5.757850 ACCGATTCAATTTCCTAATGAGC 57.242 39.130 0.00 0.00 0.00 4.26
3876 5088 8.760980 TTCCATTACCGATTCAATTTCCTAAT 57.239 30.769 0.00 0.00 0.00 1.73
3879 5091 5.067805 GCTTCCATTACCGATTCAATTTCCT 59.932 40.000 0.00 0.00 0.00 3.36
3897 5109 1.220749 GGCACGGTGATAGCTTCCA 59.779 57.895 13.29 0.00 0.00 3.53
3915 5127 1.004200 AAGGCACGTTACCCCGAAG 60.004 57.895 0.66 0.00 0.00 3.79
3917 5129 2.042404 AACAAGGCACGTTACCCCGA 62.042 55.000 0.66 0.00 0.00 5.14
3918 5130 1.167781 AAACAAGGCACGTTACCCCG 61.168 55.000 0.66 0.00 0.00 5.73
3919 5131 1.034356 AAAACAAGGCACGTTACCCC 58.966 50.000 0.66 0.00 0.00 4.95
3920 5132 2.875087 AAAAACAAGGCACGTTACCC 57.125 45.000 0.66 0.00 0.00 3.69
3954 5179 7.667557 TGTATATAGGCTTAAAGCTTCGATGT 58.332 34.615 0.00 0.00 41.99 3.06
4035 5260 9.484806 TGATCCATTCATATATTGAGCTAGAGA 57.515 33.333 0.00 0.00 35.27 3.10
4069 5294 5.891451 TGAAGTAGAGAATACGGACATGTG 58.109 41.667 1.15 0.00 0.00 3.21
4076 5301 4.508124 GCCATGTTGAAGTAGAGAATACGG 59.492 45.833 0.00 0.00 0.00 4.02
4077 5302 5.005779 GTGCCATGTTGAAGTAGAGAATACG 59.994 44.000 0.00 0.00 0.00 3.06
4078 5303 5.294552 GGTGCCATGTTGAAGTAGAGAATAC 59.705 44.000 0.00 0.00 0.00 1.89
4088 5313 4.806640 ATTAAAGGGTGCCATGTTGAAG 57.193 40.909 0.00 0.00 0.00 3.02
4188 5413 9.032420 GTGATAGCTTCTATGTACCAGTAAAAC 57.968 37.037 0.00 0.00 0.00 2.43
4189 5414 8.202137 GGTGATAGCTTCTATGTACCAGTAAAA 58.798 37.037 0.00 0.00 0.00 1.52
4253 5478 0.385723 CCGGCGTATCGAGCTAAGTC 60.386 60.000 6.01 0.00 34.52 3.01
4288 5513 5.112686 GTGAGTTTGATCACTCCCATACTC 58.887 45.833 10.04 0.00 45.03 2.59
4315 5540 2.113139 AACTCCACGGCCCTTGTG 59.887 61.111 0.00 0.00 37.09 3.33
4316 5541 2.113139 CAACTCCACGGCCCTTGT 59.887 61.111 0.00 0.00 0.00 3.16
4317 5542 1.528309 AACAACTCCACGGCCCTTG 60.528 57.895 0.00 0.00 0.00 3.61
4318 5543 1.528309 CAACAACTCCACGGCCCTT 60.528 57.895 0.00 0.00 0.00 3.95
4319 5544 2.113139 CAACAACTCCACGGCCCT 59.887 61.111 0.00 0.00 0.00 5.19
4320 5545 3.670377 GCAACAACTCCACGGCCC 61.670 66.667 0.00 0.00 0.00 5.80
4321 5546 2.130073 GAAGCAACAACTCCACGGCC 62.130 60.000 0.00 0.00 0.00 6.13
4322 5547 1.282875 GAAGCAACAACTCCACGGC 59.717 57.895 0.00 0.00 0.00 5.68
4323 5548 0.307760 GTGAAGCAACAACTCCACGG 59.692 55.000 0.00 0.00 0.00 4.94
4324 5549 1.003545 CTGTGAAGCAACAACTCCACG 60.004 52.381 0.00 0.00 0.00 4.94
4325 5550 2.017049 ACTGTGAAGCAACAACTCCAC 58.983 47.619 0.00 0.00 0.00 4.02
4326 5551 2.418368 ACTGTGAAGCAACAACTCCA 57.582 45.000 0.00 0.00 0.00 3.86
4327 5552 4.893424 TTTACTGTGAAGCAACAACTCC 57.107 40.909 0.00 0.00 0.00 3.85
4328 5553 7.042051 TGACTATTTACTGTGAAGCAACAACTC 60.042 37.037 0.00 0.00 0.00 3.01
4329 5554 6.765989 TGACTATTTACTGTGAAGCAACAACT 59.234 34.615 0.00 0.00 0.00 3.16
4330 5555 6.954944 TGACTATTTACTGTGAAGCAACAAC 58.045 36.000 0.00 0.00 0.00 3.32
4331 5556 7.561021 TTGACTATTTACTGTGAAGCAACAA 57.439 32.000 0.00 0.00 0.00 2.83
4332 5557 7.561021 TTTGACTATTTACTGTGAAGCAACA 57.439 32.000 0.00 0.00 0.00 3.33
4333 5558 8.850454 TTTTTGACTATTTACTGTGAAGCAAC 57.150 30.769 0.00 0.00 0.00 4.17
4357 5582 5.261216 TGGTCTTTGAGGTCTTGAGTTTTT 58.739 37.500 0.00 0.00 0.00 1.94
4358 5583 4.855340 TGGTCTTTGAGGTCTTGAGTTTT 58.145 39.130 0.00 0.00 0.00 2.43
4359 5584 4.164221 TCTGGTCTTTGAGGTCTTGAGTTT 59.836 41.667 0.00 0.00 0.00 2.66
4363 5588 2.368875 GGTCTGGTCTTTGAGGTCTTGA 59.631 50.000 0.00 0.00 0.00 3.02
4366 5591 2.103153 TGGTCTGGTCTTTGAGGTCT 57.897 50.000 0.00 0.00 0.00 3.85
4380 5605 4.895889 TGAGTAGCTAGCAACATATGGTCT 59.104 41.667 18.83 3.04 40.93 3.85
4398 5623 4.460263 AGCAGGATGTGTTTGTTTGAGTA 58.540 39.130 0.00 0.00 39.31 2.59
4413 5638 0.630673 TGGCCATTGGTTAGCAGGAT 59.369 50.000 0.00 0.00 0.00 3.24
4508 5842 8.031864 CCGATATTTGTCAGTTCATAGCTATCT 58.968 37.037 2.34 0.00 0.00 1.98
4524 5858 1.735571 GTTCACGTGGCCGATATTTGT 59.264 47.619 17.00 0.00 37.88 2.83
4532 5866 1.404477 GAAAATTGTTCACGTGGCCG 58.596 50.000 17.00 0.00 40.83 6.13
4536 5873 6.848800 TCATAACTTCGAAAATTGTTCACGTG 59.151 34.615 9.94 9.94 0.00 4.49
4631 5976 6.695292 AAGTTCATGCTTTTAAGAAATGCG 57.305 33.333 5.64 0.00 42.53 4.73
4685 6033 7.281999 ACATGTTCCCATTTCGAAAAATTGTTT 59.718 29.630 15.66 0.00 32.69 2.83
4696 6044 6.783892 ATTTCAAAACATGTTCCCATTTCG 57.216 33.333 12.39 0.00 0.00 3.46
4839 6256 9.606631 AGTTTGCAAATGTTTTTGTAATTCCTA 57.393 25.926 16.21 0.00 43.76 2.94
4846 6264 8.993121 TCAGAAAAGTTTGCAAATGTTTTTGTA 58.007 25.926 24.57 15.45 43.43 2.41
4854 6277 8.592105 TCCTATTTCAGAAAAGTTTGCAAATG 57.408 30.769 16.21 8.48 0.00 2.32
5007 6687 8.805175 TGTATGTGAATTTCATGAAATGTTCCT 58.195 29.630 29.52 16.40 46.80 3.36
5067 6749 7.826260 ATTGTTCACGACTTCAAAAATGTTT 57.174 28.000 0.00 0.00 0.00 2.83
5136 6818 8.124199 AGTTTTTGCATTAAAGAAGCACATTTG 58.876 29.630 0.00 0.00 38.11 2.32
5542 7296 3.650950 GCTCCCAAGACTGGCCCA 61.651 66.667 0.00 0.00 41.99 5.36
5557 7311 3.097614 AGTTCGAGTAACATACAGGGCT 58.902 45.455 0.00 0.00 40.83 5.19
5569 7323 4.242475 CACTGTGGCAAATAGTTCGAGTA 58.758 43.478 0.00 0.00 0.00 2.59
5570 7324 3.067106 CACTGTGGCAAATAGTTCGAGT 58.933 45.455 0.00 0.00 0.00 4.18
5586 7340 0.981183 TCCTATTTCCCGCACACTGT 59.019 50.000 0.00 0.00 0.00 3.55
5613 7368 3.049674 CATGCCCACGCGACAACT 61.050 61.111 15.93 0.00 38.08 3.16
5639 7394 3.127425 GTGACCCAGTAAAGTCAGCTT 57.873 47.619 0.00 0.00 43.36 3.74
5640 7395 2.841442 GTGACCCAGTAAAGTCAGCT 57.159 50.000 0.00 0.00 43.36 4.24
5665 7420 0.814010 ATTTCATACGTGGGCCGAGC 60.814 55.000 0.00 0.00 40.70 5.03
5667 7422 1.208535 AGAATTTCATACGTGGGCCGA 59.791 47.619 0.00 0.00 40.70 5.54
5675 7430 3.804036 TGTAGGGGCAGAATTTCATACG 58.196 45.455 0.00 0.00 0.00 3.06
5676 7431 6.152831 ACTTTTGTAGGGGCAGAATTTCATAC 59.847 38.462 0.00 0.00 0.00 2.39
5690 7445 5.872963 AGGTGGTACTAAACTTTTGTAGGG 58.127 41.667 0.00 0.00 0.00 3.53
5691 7446 5.636543 CGAGGTGGTACTAAACTTTTGTAGG 59.363 44.000 0.00 0.00 0.00 3.18
5692 7447 6.218746 ACGAGGTGGTACTAAACTTTTGTAG 58.781 40.000 0.00 0.00 0.00 2.74
5693 7448 6.160576 ACGAGGTGGTACTAAACTTTTGTA 57.839 37.500 0.00 0.00 0.00 2.41
5694 7449 5.027293 ACGAGGTGGTACTAAACTTTTGT 57.973 39.130 0.00 0.00 0.00 2.83
5695 7450 8.246180 TCTATACGAGGTGGTACTAAACTTTTG 58.754 37.037 0.00 0.00 0.00 2.44
5696 7451 8.353423 TCTATACGAGGTGGTACTAAACTTTT 57.647 34.615 0.00 0.00 0.00 2.27
5697 7452 7.944729 TCTATACGAGGTGGTACTAAACTTT 57.055 36.000 0.00 0.00 0.00 2.66
5698 7453 7.944729 TTCTATACGAGGTGGTACTAAACTT 57.055 36.000 0.00 0.00 0.00 2.66
5699 7454 7.944729 TTTCTATACGAGGTGGTACTAAACT 57.055 36.000 0.00 0.00 0.00 2.66
5700 7455 8.986477 TTTTTCTATACGAGGTGGTACTAAAC 57.014 34.615 0.00 0.00 0.00 2.01
5725 7480 5.085920 TCATCCATTCACCACCAGATTTTT 58.914 37.500 0.00 0.00 0.00 1.94
5726 7481 4.676109 TCATCCATTCACCACCAGATTTT 58.324 39.130 0.00 0.00 0.00 1.82
5727 7482 4.320546 TCATCCATTCACCACCAGATTT 57.679 40.909 0.00 0.00 0.00 2.17
5728 7483 4.320546 TTCATCCATTCACCACCAGATT 57.679 40.909 0.00 0.00 0.00 2.40
5729 7484 4.320546 TTTCATCCATTCACCACCAGAT 57.679 40.909 0.00 0.00 0.00 2.90
5730 7485 3.805066 TTTCATCCATTCACCACCAGA 57.195 42.857 0.00 0.00 0.00 3.86
5731 7486 4.870123 TTTTTCATCCATTCACCACCAG 57.130 40.909 0.00 0.00 0.00 4.00
5732 7487 5.822132 AATTTTTCATCCATTCACCACCA 57.178 34.783 0.00 0.00 0.00 4.17
5733 7488 6.340522 CCTAATTTTTCATCCATTCACCACC 58.659 40.000 0.00 0.00 0.00 4.61
5734 7489 6.154363 TCCCTAATTTTTCATCCATTCACCAC 59.846 38.462 0.00 0.00 0.00 4.16
5735 7490 6.259893 TCCCTAATTTTTCATCCATTCACCA 58.740 36.000 0.00 0.00 0.00 4.17
5736 7491 6.790232 TCCCTAATTTTTCATCCATTCACC 57.210 37.500 0.00 0.00 0.00 4.02
5737 7492 7.275560 CGTTTCCCTAATTTTTCATCCATTCAC 59.724 37.037 0.00 0.00 0.00 3.18
5738 7493 7.319646 CGTTTCCCTAATTTTTCATCCATTCA 58.680 34.615 0.00 0.00 0.00 2.57
5739 7494 6.255670 GCGTTTCCCTAATTTTTCATCCATTC 59.744 38.462 0.00 0.00 0.00 2.67
5740 7495 6.106003 GCGTTTCCCTAATTTTTCATCCATT 58.894 36.000 0.00 0.00 0.00 3.16
5741 7496 5.186797 TGCGTTTCCCTAATTTTTCATCCAT 59.813 36.000 0.00 0.00 0.00 3.41
5742 7497 4.524714 TGCGTTTCCCTAATTTTTCATCCA 59.475 37.500 0.00 0.00 0.00 3.41
5743 7498 4.862574 GTGCGTTTCCCTAATTTTTCATCC 59.137 41.667 0.00 0.00 0.00 3.51
5744 7499 4.862574 GGTGCGTTTCCCTAATTTTTCATC 59.137 41.667 0.00 0.00 0.00 2.92
5745 7500 4.526650 AGGTGCGTTTCCCTAATTTTTCAT 59.473 37.500 0.00 0.00 0.00 2.57
5746 7501 3.892588 AGGTGCGTTTCCCTAATTTTTCA 59.107 39.130 0.00 0.00 0.00 2.69
5747 7502 4.514781 AGGTGCGTTTCCCTAATTTTTC 57.485 40.909 0.00 0.00 0.00 2.29
5748 7503 4.627058 CAAGGTGCGTTTCCCTAATTTTT 58.373 39.130 0.00 0.00 0.00 1.94
5749 7504 3.554129 GCAAGGTGCGTTTCCCTAATTTT 60.554 43.478 0.00 0.00 31.71 1.82
5750 7505 2.029380 GCAAGGTGCGTTTCCCTAATTT 60.029 45.455 0.00 0.00 31.71 1.82
5751 7506 1.544246 GCAAGGTGCGTTTCCCTAATT 59.456 47.619 0.00 0.00 31.71 1.40
5752 7507 1.173913 GCAAGGTGCGTTTCCCTAAT 58.826 50.000 0.00 0.00 31.71 1.73
5753 7508 2.636299 GCAAGGTGCGTTTCCCTAA 58.364 52.632 0.00 0.00 31.71 2.69
5754 7509 4.390048 GCAAGGTGCGTTTCCCTA 57.610 55.556 0.00 0.00 31.71 3.53
5763 7518 8.365647 TCTATACCTACTAATAAAGCAAGGTGC 58.634 37.037 2.14 0.00 42.25 5.01
5797 7552 8.541234 TGGACTGTCACGTAGATCTATATCTAT 58.459 37.037 10.38 0.00 44.57 1.98
5798 7553 7.904205 TGGACTGTCACGTAGATCTATATCTA 58.096 38.462 10.38 0.00 42.61 1.98
5799 7554 6.770542 TGGACTGTCACGTAGATCTATATCT 58.229 40.000 10.38 0.00 44.80 1.98
5800 7555 7.436430 TTGGACTGTCACGTAGATCTATATC 57.564 40.000 10.38 0.00 0.00 1.63
5801 7556 9.688091 ATATTGGACTGTCACGTAGATCTATAT 57.312 33.333 10.38 0.00 0.00 0.86
5803 7558 9.688091 ATATATTGGACTGTCACGTAGATCTAT 57.312 33.333 10.38 0.00 0.00 1.98
5804 7559 9.516546 AATATATTGGACTGTCACGTAGATCTA 57.483 33.333 10.38 0.00 0.00 1.98
5805 7560 8.300286 CAATATATTGGACTGTCACGTAGATCT 58.700 37.037 16.41 0.00 34.22 2.75
5806 7561 7.062371 GCAATATATTGGACTGTCACGTAGATC 59.938 40.741 23.57 0.93 38.21 2.75
5831 7586 8.018677 ACGTAACATATAAAGATGCATGTAGC 57.981 34.615 2.46 0.00 45.96 3.58
6095 8693 2.092968 TCAGCCATCACCCATTGTAGAC 60.093 50.000 0.00 0.00 0.00 2.59
6107 8705 1.209261 TCGCCATTAGTTCAGCCATCA 59.791 47.619 0.00 0.00 0.00 3.07
6339 8937 1.626686 TTGCCCATGTGTTGGTTAGG 58.373 50.000 0.00 0.00 44.83 2.69
6433 9031 2.613977 CGAAGTCCATGCCTCTCAAGTT 60.614 50.000 0.00 0.00 0.00 2.66
6482 9080 3.409804 AATCAATCCCAGGGCAAATCT 57.590 42.857 0.00 0.00 0.00 2.40
6521 9119 1.064654 GAAGGCTAGCCAAAGCAATCG 59.935 52.381 34.70 0.00 44.64 3.34
6670 9270 5.405269 GTGGTTTTGCAAGTGTAATTCATCC 59.595 40.000 0.00 0.00 0.00 3.51
6754 9363 2.078611 AGGGGTATTCTTGGGGTTTGT 58.921 47.619 0.00 0.00 0.00 2.83
6797 9406 7.551262 TGTAAGATATTATGACAGCCGTTTTGT 59.449 33.333 0.00 0.00 0.00 2.83
6911 9520 7.707035 GTGTACTGTTAGGGAATACATGAGAAG 59.293 40.741 0.00 0.00 0.00 2.85
7004 9613 3.513515 AGTCAATTTTGTGGGTTGTGTGT 59.486 39.130 0.00 0.00 0.00 3.72
7087 9696 9.459640 GTAAACTTCCCAACAAAAATAGAACTC 57.540 33.333 0.00 0.00 0.00 3.01
7252 9863 4.101119 CGAGGTGAGGTAACCCATCTAAAT 59.899 45.833 0.00 0.00 41.54 1.40
7387 9998 6.211515 GCACTCCCATCATTAAAGCATTTAG 58.788 40.000 0.00 0.00 42.24 1.85
7391 10002 2.961062 GGCACTCCCATCATTAAAGCAT 59.039 45.455 0.00 0.00 0.00 3.79
7392 10003 2.378038 GGCACTCCCATCATTAAAGCA 58.622 47.619 0.00 0.00 0.00 3.91
7412 10023 2.171237 TCTCAGACACCCTAATGCATGG 59.829 50.000 0.00 0.00 0.00 3.66
7413 10024 3.548745 TCTCAGACACCCTAATGCATG 57.451 47.619 0.00 0.00 0.00 4.06
7460 10095 6.492429 AGGGTTTGATTTGGTTACTTAACTCC 59.508 38.462 0.00 0.00 36.47 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.