Multiple sequence alignment - TraesCS7D01G001500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G001500 chr7D 100.000 4929 0 0 1801 6729 1264215 1259287 0.000000e+00 9103.0
1 TraesCS7D01G001500 chr7D 100.000 1351 0 0 1 1351 1266015 1264665 0.000000e+00 2495.0
2 TraesCS7D01G001500 chr7D 92.174 230 11 3 5526 5755 1254268 1254046 1.090000e-82 318.0
3 TraesCS7D01G001500 chr7D 91.705 217 17 1 1803 2019 196262844 196262629 3.940000e-77 300.0
4 TraesCS7D01G001500 chr7D 86.397 272 25 5 5259 5530 1254701 1254442 3.070000e-73 287.0
5 TraesCS7D01G001500 chr7D 84.667 300 25 12 892 1184 205117408 205117693 5.140000e-71 279.0
6 TraesCS7D01G001500 chr7D 92.517 147 11 0 1803 1949 205117839 205117985 1.900000e-50 211.0
7 TraesCS7D01G001500 chr7D 94.318 88 5 0 1264 1351 205117724 205117811 1.180000e-27 135.0
8 TraesCS7D01G001500 chrUn 89.519 1164 74 20 5546 6676 89027273 89026125 0.000000e+00 1430.0
9 TraesCS7D01G001500 chrUn 88.767 454 40 4 5064 5511 89027713 89027265 4.590000e-151 545.0
10 TraesCS7D01G001500 chrUn 90.868 219 14 6 4740 4958 89032907 89032695 8.540000e-74 289.0
11 TraesCS7D01G001500 chrUn 100.000 43 0 0 2821 2863 356126566 356126608 5.590000e-11 80.5
12 TraesCS7D01G001500 chrUn 88.889 45 4 1 367 410 22376107 22376063 3.000000e-03 54.7
13 TraesCS7D01G001500 chr4A 92.265 892 47 13 3788 4665 730997512 730998395 0.000000e+00 1245.0
14 TraesCS7D01G001500 chr4A 87.047 965 84 12 5169 6111 743920686 743919741 0.000000e+00 1051.0
15 TraesCS7D01G001500 chr4A 86.942 919 99 17 4077 4984 743921927 743921019 0.000000e+00 1013.0
16 TraesCS7D01G001500 chr4A 86.099 928 82 29 4819 5730 730999087 730999983 0.000000e+00 955.0
17 TraesCS7D01G001500 chr4A 79.239 867 102 45 518 1348 743924277 743923453 3.570000e-147 532.0
18 TraesCS7D01G001500 chr4A 87.471 431 27 5 2492 2896 730996593 730997022 7.900000e-129 472.0
19 TraesCS7D01G001500 chr4A 89.935 308 25 3 1801 2108 743923431 743923130 6.330000e-105 392.0
20 TraesCS7D01G001500 chr4A 90.444 293 23 4 3784 4075 743922189 743921901 1.370000e-101 381.0
21 TraesCS7D01G001500 chr4A 95.812 191 7 1 3452 3641 730997313 730997503 2.360000e-79 307.0
22 TraesCS7D01G001500 chr4A 86.007 293 29 6 2541 2821 743922891 743922599 3.050000e-78 303.0
23 TraesCS7D01G001500 chr4A 90.957 188 16 1 3452 3638 743922380 743922193 1.120000e-62 252.0
24 TraesCS7D01G001500 chr4A 92.593 162 11 1 2895 3055 730997142 730997303 1.460000e-56 231.0
25 TraesCS7D01G001500 chr4A 94.891 137 7 0 4672 4808 730998732 730998868 1.470000e-51 215.0
26 TraesCS7D01G001500 chr4A 89.510 143 4 3 3643 3785 609939013 609939144 3.230000e-38 171.0
27 TraesCS7D01G001500 chr4A 94.737 76 4 0 2821 2896 743922567 743922492 1.190000e-22 119.0
28 TraesCS7D01G001500 chr4A 95.238 63 2 1 5066 5127 743921020 743920958 1.540000e-16 99.0
29 TraesCS7D01G001500 chr7A 89.159 904 51 20 4091 4987 1407853 1408716 0.000000e+00 1083.0
30 TraesCS7D01G001500 chr7A 88.846 771 43 13 2895 3641 1406866 1407617 0.000000e+00 907.0
31 TraesCS7D01G001500 chr7A 89.836 669 58 4 5166 5829 1409010 1409673 0.000000e+00 850.0
32 TraesCS7D01G001500 chr7A 84.676 894 72 29 1 854 1403994 1404862 0.000000e+00 832.0
33 TraesCS7D01G001500 chr7A 85.592 583 52 19 1801 2378 1405505 1406060 3.500000e-162 582.0
34 TraesCS7D01G001500 chr7A 87.251 502 34 16 862 1351 1404907 1405390 4.590000e-151 545.0
35 TraesCS7D01G001500 chr7A 93.373 332 22 0 2492 2823 1406312 1406643 6.060000e-135 492.0
36 TraesCS7D01G001500 chr7A 83.395 542 57 11 5 529 1382202 1382727 7.900000e-129 472.0
37 TraesCS7D01G001500 chr7A 86.842 418 29 12 5833 6234 1409710 1410117 1.720000e-120 444.0
38 TraesCS7D01G001500 chr7A 94.191 241 8 4 3782 4019 1407615 1407852 4.960000e-96 363.0
39 TraesCS7D01G001500 chr7A 91.705 217 18 0 1803 2019 525318639 525318423 1.100000e-77 302.0
40 TraesCS7D01G001500 chr7A 84.950 299 27 7 892 1184 604790646 604790932 3.070000e-73 287.0
41 TraesCS7D01G001500 chr7A 83.444 302 32 8 892 1187 525319071 525318782 1.440000e-66 265.0
42 TraesCS7D01G001500 chr7A 85.375 253 24 8 6321 6561 1415835 1416086 4.030000e-62 250.0
43 TraesCS7D01G001500 chr7A 94.318 88 5 0 1264 1351 525318754 525318667 1.180000e-27 135.0
44 TraesCS7D01G001500 chr7A 97.368 76 2 0 2821 2896 1406671 1406746 5.480000e-26 130.0
45 TraesCS7D01G001500 chr7A 89.888 89 8 1 1264 1351 604790969 604791057 5.520000e-21 113.0
46 TraesCS7D01G001500 chr7A 96.923 65 1 1 5064 5127 1408709 1408773 2.570000e-19 108.0
47 TraesCS7D01G001500 chr7A 96.970 33 1 0 378 410 110398500 110398532 1.000000e-03 56.5
48 TraesCS7D01G001500 chr2D 93.586 343 20 1 2400 2740 90782857 90782515 1.670000e-140 510.0
49 TraesCS7D01G001500 chr3A 93.294 343 20 2 2400 2740 359309398 359309739 2.800000e-138 503.0
50 TraesCS7D01G001500 chr3A 92.558 215 11 2 2189 2403 359309103 359309312 3.050000e-78 303.0
51 TraesCS7D01G001500 chr3A 91.589 214 18 0 1803 2016 143993293 143993080 5.100000e-76 296.0
52 TraesCS7D01G001500 chr3A 82.178 303 34 12 892 1187 143993725 143993436 6.740000e-60 243.0
53 TraesCS7D01G001500 chr3A 92.199 141 11 0 3644 3784 683532861 683533001 4.120000e-47 200.0
54 TraesCS7D01G001500 chr3A 92.045 88 7 0 1264 1351 143993408 143993321 2.550000e-24 124.0
55 TraesCS7D01G001500 chr3D 93.548 217 14 0 1803 2019 371517405 371517189 2.340000e-84 324.0
56 TraesCS7D01G001500 chr7B 86.486 296 29 3 5286 5580 684416682 684416967 1.410000e-81 315.0
57 TraesCS7D01G001500 chr7B 86.486 296 29 3 5286 5580 684433725 684434010 1.410000e-81 315.0
58 TraesCS7D01G001500 chr7B 89.529 191 13 6 3785 3974 443646612 443646796 1.130000e-57 235.0
59 TraesCS7D01G001500 chr7B 80.682 264 41 3 4077 4330 443646821 443647084 5.320000e-46 196.0
60 TraesCS7D01G001500 chr7B 97.826 92 1 1 4979 5070 458527969 458527879 2.510000e-34 158.0
61 TraesCS7D01G001500 chr2A 90.233 215 21 0 1803 2017 344825762 344825548 1.430000e-71 281.0
62 TraesCS7D01G001500 chr2A 87.770 139 12 2 909 1047 344840591 344840458 2.510000e-34 158.0
63 TraesCS7D01G001500 chr2A 95.833 96 4 0 4974 5069 753210733 753210638 9.040000e-34 156.0
64 TraesCS7D01G001500 chr2A 94.595 74 4 0 1114 1187 344825978 344825905 1.530000e-21 115.0
65 TraesCS7D01G001500 chr1A 82.838 303 32 10 892 1187 267871899 267871610 3.110000e-63 254.0
66 TraesCS7D01G001500 chr2B 94.326 141 8 0 3642 3782 797211280 797211140 4.090000e-52 217.0
67 TraesCS7D01G001500 chr2B 95.050 101 3 2 4979 5078 480925294 480925393 2.510000e-34 158.0
68 TraesCS7D01G001500 chr2B 85.161 155 18 4 3821 3974 447815594 447815744 3.250000e-33 154.0
69 TraesCS7D01G001500 chr2B 89.565 115 12 0 4966 5080 43285258 43285372 5.440000e-31 147.0
70 TraesCS7D01G001500 chr4B 85.864 191 20 6 3785 3974 605162594 605162410 5.320000e-46 196.0
71 TraesCS7D01G001500 chr4B 97.826 92 1 1 4980 5071 29271924 29271834 2.510000e-34 158.0
72 TraesCS7D01G001500 chr4B 95.789 95 4 0 4979 5073 454519251 454519345 3.250000e-33 154.0
73 TraesCS7D01G001500 chr6A 85.806 155 16 5 3821 3974 22031284 22031433 6.980000e-35 159.0
74 TraesCS7D01G001500 chr6A 96.809 94 2 1 4974 5067 172113175 172113267 9.040000e-34 156.0
75 TraesCS7D01G001500 chr5D 91.304 115 8 2 4975 5088 10524831 10524944 9.040000e-34 156.0
76 TraesCS7D01G001500 chr5D 100.000 28 0 0 6532 6559 113380944 113380917 1.200000e-02 52.8
77 TraesCS7D01G001500 chr5B 90.265 113 8 3 4980 5091 520899463 520899573 1.960000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G001500 chr7D 1259287 1266015 6728 True 5799.000000 9103 100.000000 1 6729 2 chr7D.!!$R3 6728
1 TraesCS7D01G001500 chr7D 1254046 1254701 655 True 302.500000 318 89.285500 5259 5755 2 chr7D.!!$R2 496
2 TraesCS7D01G001500 chr7D 205117408 205117985 577 False 208.333333 279 90.500667 892 1949 3 chr7D.!!$F1 1057
3 TraesCS7D01G001500 chrUn 89026125 89027713 1588 True 987.500000 1430 89.143000 5064 6676 2 chrUn.!!$R3 1612
4 TraesCS7D01G001500 chr4A 730996593 730999983 3390 False 570.833333 1245 91.521833 2492 5730 6 chr4A.!!$F2 3238
5 TraesCS7D01G001500 chr4A 743919741 743924277 4536 True 460.222222 1051 88.949556 518 6111 9 chr4A.!!$R1 5593
6 TraesCS7D01G001500 chr7A 1403994 1410117 6123 False 576.000000 1083 90.368818 1 6234 11 chr7A.!!$F4 6233
7 TraesCS7D01G001500 chr7A 1382202 1382727 525 False 472.000000 472 83.395000 5 529 1 chr7A.!!$F1 524
8 TraesCS7D01G001500 chr7A 525318423 525319071 648 True 234.000000 302 89.822333 892 2019 3 chr7A.!!$R1 1127
9 TraesCS7D01G001500 chr3A 359309103 359309739 636 False 403.000000 503 92.926000 2189 2740 2 chr3A.!!$F2 551
10 TraesCS7D01G001500 chr3A 143993080 143993725 645 True 221.000000 296 88.604000 892 2016 3 chr3A.!!$R1 1124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 537 0.807275 CGAGCATGCATTCGACCTCA 60.807 55.000 21.09 0.0 39.06 3.86 F
1209 1316 1.145377 CCCCCTTTCCACCGATACG 59.855 63.158 0.00 0.0 0.00 3.06 F
2101 2243 0.179181 CATGACTGTGCGTGATTGCC 60.179 55.000 0.00 0.0 0.00 4.52 F
3169 3647 0.037232 GCGGGGCCTGCTAGTAATAG 60.037 60.000 30.08 0.0 0.00 1.73 F
3711 4216 0.107165 ATCGGCTAACTGAAAGGGGC 60.107 55.000 0.00 0.0 39.30 5.80 F
3732 4237 0.536915 CGGTTTTTGGTTACGGGGGA 60.537 55.000 0.00 0.0 0.00 4.81 F
3785 4290 0.683179 GTTCCAAGCGGGGCCTAAAT 60.683 55.000 0.84 0.0 37.22 1.40 F
5197 6522 0.746659 GTGTGGCTTTGCTCTTGGTT 59.253 50.000 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2225 0.606130 TGGCAATCACGCACAGTCAT 60.606 50.000 0.0 0.0 0.00 3.06 R
3065 3542 0.819259 GTGTTGAGTGAAGCCAGCCA 60.819 55.000 0.0 0.0 0.00 4.75 R
3692 4197 0.107165 GCCCCTTTCAGTTAGCCGAT 60.107 55.000 0.0 0.0 0.00 4.18 R
4431 4963 3.005897 ACTGCTCGTACTCAAGTGACAAT 59.994 43.478 0.0 0.0 0.00 2.71 R
5380 6709 0.610174 CAGGCAGAGAGTAGTGGCAA 59.390 55.000 0.0 0.0 41.59 4.52 R
5473 6802 0.748005 CCGCCAAACCGATCATTCCT 60.748 55.000 0.0 0.0 0.00 3.36 R
5647 7154 0.879765 TCCAGGACTTCTTCGTCGTC 59.120 55.000 0.0 0.0 34.75 4.20 R
6682 8261 0.034059 ACGCTTCTCTCACCAGGTTG 59.966 55.000 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.837940 AATTTCCTAGCCCGAGGGAC 59.162 55.000 13.28 3.38 37.20 4.46
50 51 8.970691 AAAGAGTGCAACATTAACATTGATAC 57.029 30.769 5.00 3.62 41.43 2.24
71 72 4.393155 CTGTGCTAGTGGGCGGCA 62.393 66.667 12.47 0.00 34.52 5.69
80 81 3.241530 TGGGCGGCAGAGTCAACT 61.242 61.111 12.47 0.00 0.00 3.16
83 84 2.743928 GCGGCAGAGTCAACTGGG 60.744 66.667 0.00 0.00 38.22 4.45
110 112 1.017387 GAAGGGGAATCACACATCGC 58.983 55.000 0.00 0.00 0.00 4.58
148 150 5.339008 ACCAATAAGTTGCGATGTCTCTA 57.661 39.130 0.00 0.00 33.90 2.43
155 157 3.806521 AGTTGCGATGTCTCTATCATTGC 59.193 43.478 10.16 10.16 46.76 3.56
247 249 3.196901 ACATGAGTCCCGTACATGCTTAA 59.803 43.478 0.00 0.00 43.21 1.85
248 250 4.141711 ACATGAGTCCCGTACATGCTTAAT 60.142 41.667 0.00 0.00 43.21 1.40
249 251 4.481368 TGAGTCCCGTACATGCTTAATT 57.519 40.909 0.00 0.00 0.00 1.40
250 252 5.601583 TGAGTCCCGTACATGCTTAATTA 57.398 39.130 0.00 0.00 0.00 1.40
251 253 5.353938 TGAGTCCCGTACATGCTTAATTAC 58.646 41.667 0.00 0.00 0.00 1.89
252 254 4.700700 AGTCCCGTACATGCTTAATTACC 58.299 43.478 0.00 0.00 0.00 2.85
253 255 3.492011 GTCCCGTACATGCTTAATTACCG 59.508 47.826 0.00 0.00 0.00 4.02
266 268 6.316890 TGCTTAATTACCGTTATGAGGAAACC 59.683 38.462 0.00 0.00 0.00 3.27
274 276 5.218139 CCGTTATGAGGAAACCGTAGATAC 58.782 45.833 0.00 0.00 0.00 2.24
277 279 6.017275 CGTTATGAGGAAACCGTAGATACTCT 60.017 42.308 0.00 0.00 0.00 3.24
286 288 6.445451 AACCGTAGATACTCTGTAGGGATA 57.555 41.667 0.00 0.00 33.86 2.59
289 291 5.754406 CCGTAGATACTCTGTAGGGATATCG 59.246 48.000 0.00 0.00 31.87 2.92
324 327 8.471609 CCATTTAATTCCGTTTAAACCCACTAT 58.528 33.333 12.66 0.00 34.75 2.12
410 431 2.529151 GACGCCACTTATTTGCCATTG 58.471 47.619 0.00 0.00 0.00 2.82
411 432 2.163412 GACGCCACTTATTTGCCATTGA 59.837 45.455 0.00 0.00 0.00 2.57
412 433 2.760092 ACGCCACTTATTTGCCATTGAT 59.240 40.909 0.00 0.00 0.00 2.57
413 434 3.195396 ACGCCACTTATTTGCCATTGATT 59.805 39.130 0.00 0.00 0.00 2.57
428 449 6.434028 TGCCATTGATTTACATCCCTAATAGC 59.566 38.462 0.00 0.00 0.00 2.97
440 461 1.065709 CCTAATAGCCCACCACAACGT 60.066 52.381 0.00 0.00 0.00 3.99
450 471 2.061773 CACCACAACGTGAGAGACATC 58.938 52.381 0.00 0.00 35.23 3.06
463 484 1.792949 GAGACATCGCGACTTTGTTGT 59.207 47.619 12.93 11.35 0.00 3.32
468 489 2.445453 TCGCGACTTTGTTGTTTGTC 57.555 45.000 3.71 0.00 0.00 3.18
494 515 0.971447 AAGGTGGCCGACTCTACCTC 60.971 60.000 10.45 0.00 42.47 3.85
496 517 1.380112 GTGGCCGACTCTACCTCCT 60.380 63.158 0.00 0.00 0.00 3.69
501 522 1.161563 CCGACTCTACCTCCTCGAGC 61.162 65.000 6.99 0.00 0.00 5.03
516 537 0.807275 CGAGCATGCATTCGACCTCA 60.807 55.000 21.09 0.00 39.06 3.86
908 1008 8.996651 TCAAAGGTAATTTCTTTTTCTCCTCT 57.003 30.769 4.39 0.00 32.72 3.69
909 1009 9.067986 TCAAAGGTAATTTCTTTTTCTCCTCTC 57.932 33.333 4.39 0.00 32.72 3.20
910 1010 8.300286 CAAAGGTAATTTCTTTTTCTCCTCTCC 58.700 37.037 4.39 0.00 32.72 3.71
911 1011 6.174049 AGGTAATTTCTTTTTCTCCTCTCCG 58.826 40.000 0.00 0.00 0.00 4.63
948 1048 4.090354 GTGCGATTTTTGGACATTGACATG 59.910 41.667 0.00 0.00 36.34 3.21
971 1071 3.228188 TGCTGATTGTTCTTTCTGGGT 57.772 42.857 0.00 0.00 0.00 4.51
1047 1147 1.525923 CATGGAGGTGGAGGCAGAG 59.474 63.158 0.00 0.00 0.00 3.35
1049 1149 3.791586 GGAGGTGGAGGCAGAGGC 61.792 72.222 0.00 0.00 40.13 4.70
1075 1175 3.400054 CCTCCGGTTCCCTGACCC 61.400 72.222 0.00 0.00 36.28 4.46
1076 1176 2.284699 CTCCGGTTCCCTGACCCT 60.285 66.667 0.00 0.00 36.28 4.34
1077 1177 2.606519 TCCGGTTCCCTGACCCTG 60.607 66.667 0.00 0.00 36.28 4.45
1079 1179 2.663196 CGGTTCCCTGACCCTGAC 59.337 66.667 0.00 0.00 36.28 3.51
1080 1180 2.955881 CGGTTCCCTGACCCTGACC 61.956 68.421 0.00 0.00 36.28 4.02
1081 1181 2.603652 GGTTCCCTGACCCTGACCC 61.604 68.421 0.00 0.00 33.41 4.46
1184 1291 3.181329 TCCAGATTGCTTCTTGGTAGGA 58.819 45.455 0.00 0.00 29.93 2.94
1209 1316 1.145377 CCCCCTTTCCACCGATACG 59.855 63.158 0.00 0.00 0.00 3.06
1226 1333 1.244019 ACGGTTTGGCTGCAGATTCC 61.244 55.000 20.43 10.15 0.00 3.01
1227 1334 1.893062 GGTTTGGCTGCAGATTCCC 59.107 57.895 20.43 9.73 0.00 3.97
1228 1335 1.607801 GGTTTGGCTGCAGATTCCCC 61.608 60.000 20.43 9.31 0.00 4.81
1229 1336 1.305213 TTTGGCTGCAGATTCCCCC 60.305 57.895 20.43 8.49 0.00 5.40
1230 1337 1.803453 TTTGGCTGCAGATTCCCCCT 61.803 55.000 20.43 0.00 0.00 4.79
1265 1395 7.532682 GTTCAGATAAGAACAGAGAATGGTC 57.467 40.000 0.00 0.00 46.87 4.02
1323 1464 5.880054 AACTGAATGAACCCGTTGATAAG 57.120 39.130 0.00 0.00 0.00 1.73
2030 2172 2.169561 TCAAGCAGGTTTTTGTTTCCCC 59.830 45.455 0.00 0.00 0.00 4.81
2031 2173 2.170397 CAAGCAGGTTTTTGTTTCCCCT 59.830 45.455 0.00 0.00 0.00 4.79
2032 2174 1.762370 AGCAGGTTTTTGTTTCCCCTG 59.238 47.619 0.00 0.00 44.43 4.45
2069 2211 3.159472 TGAAAAGTCATGCTGGCTGAAT 58.841 40.909 0.00 0.00 29.54 2.57
2076 2218 6.570672 AGTCATGCTGGCTGAATATTAATG 57.429 37.500 0.00 0.00 26.79 1.90
2078 2220 7.226441 AGTCATGCTGGCTGAATATTAATGTA 58.774 34.615 0.00 0.00 26.79 2.29
2079 2221 7.886970 AGTCATGCTGGCTGAATATTAATGTAT 59.113 33.333 0.00 0.00 26.79 2.29
2083 2225 8.916628 TGCTGGCTGAATATTAATGTATTACA 57.083 30.769 0.00 0.00 0.00 2.41
2101 2243 0.179181 CATGACTGTGCGTGATTGCC 60.179 55.000 0.00 0.00 0.00 4.52
2104 2246 0.310543 GACTGTGCGTGATTGCCAAA 59.689 50.000 0.00 0.00 0.00 3.28
2113 2255 3.120923 GCGTGATTGCCAAATTTTGTCAG 60.121 43.478 8.26 0.00 0.00 3.51
2118 2260 5.069648 TGATTGCCAAATTTTGTCAGTACCA 59.930 36.000 8.26 0.00 0.00 3.25
2119 2261 4.582701 TGCCAAATTTTGTCAGTACCAG 57.417 40.909 8.26 0.00 0.00 4.00
2120 2262 4.211125 TGCCAAATTTTGTCAGTACCAGA 58.789 39.130 8.26 0.00 0.00 3.86
2121 2263 4.832266 TGCCAAATTTTGTCAGTACCAGAT 59.168 37.500 8.26 0.00 0.00 2.90
2123 2265 5.863935 GCCAAATTTTGTCAGTACCAGATTC 59.136 40.000 8.26 0.00 0.00 2.52
2124 2266 6.516527 GCCAAATTTTGTCAGTACCAGATTCA 60.517 38.462 8.26 0.00 0.00 2.57
2125 2267 6.863126 CCAAATTTTGTCAGTACCAGATTCAC 59.137 38.462 8.26 0.00 0.00 3.18
2126 2268 7.424803 CAAATTTTGTCAGTACCAGATTCACA 58.575 34.615 0.78 0.00 0.00 3.58
2128 2270 6.801539 TTTTGTCAGTACCAGATTCACATC 57.198 37.500 0.00 0.00 0.00 3.06
2129 2271 5.745312 TTGTCAGTACCAGATTCACATCT 57.255 39.130 0.00 0.00 40.79 2.90
2130 2272 6.850752 TTGTCAGTACCAGATTCACATCTA 57.149 37.500 0.00 0.00 37.71 1.98
2131 2273 6.208988 TGTCAGTACCAGATTCACATCTAC 57.791 41.667 0.00 0.00 37.71 2.59
2132 2274 5.714806 TGTCAGTACCAGATTCACATCTACA 59.285 40.000 0.00 0.00 37.71 2.74
2134 2276 7.559897 TGTCAGTACCAGATTCACATCTACATA 59.440 37.037 0.00 0.00 37.71 2.29
2135 2277 8.079203 GTCAGTACCAGATTCACATCTACATAG 58.921 40.741 0.00 0.00 37.71 2.23
2136 2278 7.780271 TCAGTACCAGATTCACATCTACATAGT 59.220 37.037 0.00 0.00 37.71 2.12
2138 2280 8.634444 AGTACCAGATTCACATCTACATAGTTC 58.366 37.037 0.00 0.00 37.71 3.01
2139 2281 6.821388 ACCAGATTCACATCTACATAGTTCC 58.179 40.000 0.00 0.00 37.71 3.62
2140 2282 6.613271 ACCAGATTCACATCTACATAGTTCCT 59.387 38.462 0.00 0.00 37.71 3.36
2142 2284 7.655328 CCAGATTCACATCTACATAGTTCCTTC 59.345 40.741 0.00 0.00 37.71 3.46
2145 2287 9.606631 GATTCACATCTACATAGTTCCTTCTTT 57.393 33.333 0.00 0.00 0.00 2.52
2148 2290 9.256228 TCACATCTACATAGTTCCTTCTTTAGT 57.744 33.333 0.00 0.00 0.00 2.24
2228 2373 6.662414 TTTGTATTCTCATAAAGGCGTGAG 57.338 37.500 6.08 6.08 42.46 3.51
2229 2374 5.339008 TGTATTCTCATAAAGGCGTGAGT 57.661 39.130 10.44 0.00 41.92 3.41
2230 2375 5.109210 TGTATTCTCATAAAGGCGTGAGTG 58.891 41.667 10.44 0.00 41.92 3.51
2231 2376 3.953712 TTCTCATAAAGGCGTGAGTGA 57.046 42.857 10.44 0.00 41.92 3.41
2266 2411 7.278875 TGTTAATTCTTGGGATGCTTTGTTTT 58.721 30.769 0.00 0.00 0.00 2.43
2340 2487 7.106239 TCAAACTTGAGTTTCTCTCTGTTCTT 58.894 34.615 6.16 0.00 45.54 2.52
2395 2542 9.312904 TCTTTTCCCTTAAATTGAGATGACATT 57.687 29.630 0.00 0.00 0.00 2.71
2471 2723 6.127980 TGTTGTTTTGTTTTATCGTGTCCTGA 60.128 34.615 0.00 0.00 0.00 3.86
2499 2783 7.201920 GCCACTGGACATAATCTCTTCTACTTA 60.202 40.741 0.00 0.00 0.00 2.24
2608 2917 7.701539 ATACTTGCATTTTCTGTATCCAACA 57.298 32.000 0.00 0.00 36.42 3.33
2619 2928 7.581213 TTCTGTATCCAACAATTCACTGTTT 57.419 32.000 0.00 0.00 37.43 2.83
2978 3444 6.255596 TCGAATATGATTTAGACGCTAGCT 57.744 37.500 13.93 0.00 0.00 3.32
2986 3453 4.785511 TTTAGACGCTAGCTTGAGAGTT 57.214 40.909 13.93 0.00 28.71 3.01
2999 3466 6.276091 AGCTTGAGAGTTTCCAAAAATTGAC 58.724 36.000 0.00 0.00 0.00 3.18
3065 3542 8.359642 ACACATTTGTTAGCTCAACATTGTATT 58.640 29.630 15.98 9.54 46.38 1.89
3079 3556 2.113860 TGTATTGGCTGGCTTCACTC 57.886 50.000 2.00 0.00 0.00 3.51
3094 3571 1.133823 TCACTCAACACACAGCCCAAT 60.134 47.619 0.00 0.00 0.00 3.16
3095 3572 2.105649 TCACTCAACACACAGCCCAATA 59.894 45.455 0.00 0.00 0.00 1.90
3096 3573 2.226437 CACTCAACACACAGCCCAATAC 59.774 50.000 0.00 0.00 0.00 1.89
3097 3574 1.464608 CTCAACACACAGCCCAATACG 59.535 52.381 0.00 0.00 0.00 3.06
3098 3575 1.202710 TCAACACACAGCCCAATACGT 60.203 47.619 0.00 0.00 0.00 3.57
3099 3576 1.069296 CAACACACAGCCCAATACGTG 60.069 52.381 0.00 0.00 35.48 4.49
3100 3577 0.107831 ACACACAGCCCAATACGTGT 59.892 50.000 0.00 0.00 43.12 4.49
3101 3578 2.927004 ACACAGCCCAATACGTGTG 58.073 52.632 0.00 0.00 44.80 3.82
3102 3579 0.394938 ACACAGCCCAATACGTGTGA 59.605 50.000 8.24 0.00 42.43 3.58
3103 3580 1.003118 ACACAGCCCAATACGTGTGAT 59.997 47.619 8.24 0.00 42.43 3.06
3104 3581 2.083774 CACAGCCCAATACGTGTGATT 58.916 47.619 0.00 0.00 42.43 2.57
3105 3582 2.487762 CACAGCCCAATACGTGTGATTT 59.512 45.455 0.00 0.00 42.43 2.17
3106 3583 2.487762 ACAGCCCAATACGTGTGATTTG 59.512 45.455 0.00 0.00 0.00 2.32
3107 3584 2.091541 AGCCCAATACGTGTGATTTGG 58.908 47.619 0.00 3.83 38.66 3.28
3108 3585 2.088423 GCCCAATACGTGTGATTTGGA 58.912 47.619 0.00 0.00 40.89 3.53
3109 3586 2.490115 GCCCAATACGTGTGATTTGGAA 59.510 45.455 0.00 0.00 40.89 3.53
3110 3587 3.057174 GCCCAATACGTGTGATTTGGAAA 60.057 43.478 0.00 0.00 40.89 3.13
3111 3588 4.481463 CCCAATACGTGTGATTTGGAAAC 58.519 43.478 0.00 0.00 40.89 2.78
3112 3589 4.217550 CCCAATACGTGTGATTTGGAAACT 59.782 41.667 0.00 0.00 40.89 2.66
3113 3590 5.413213 CCCAATACGTGTGATTTGGAAACTA 59.587 40.000 0.00 0.00 40.89 2.24
3114 3591 6.403200 CCCAATACGTGTGATTTGGAAACTAG 60.403 42.308 0.00 0.00 40.89 2.57
3128 3605 6.048732 TGGAAACTAGATGTGTGATGCTAA 57.951 37.500 0.00 0.00 0.00 3.09
3142 3619 4.878397 GTGATGCTAACATAAGTCCTGCTT 59.122 41.667 0.00 0.00 36.35 3.91
3143 3620 4.877823 TGATGCTAACATAAGTCCTGCTTG 59.122 41.667 0.00 0.00 36.35 4.01
3169 3647 0.037232 GCGGGGCCTGCTAGTAATAG 60.037 60.000 30.08 0.00 0.00 1.73
3181 3659 6.316390 CCTGCTAGTAATAGAAAAACAGTGGG 59.684 42.308 0.38 0.00 0.00 4.61
3184 3662 6.315642 GCTAGTAATAGAAAAACAGTGGGACC 59.684 42.308 0.38 0.00 0.00 4.46
3199 3677 1.670967 GGGACCGTTGTACCTTCTTCG 60.671 57.143 0.00 0.00 42.88 3.79
3202 3680 3.237628 GACCGTTGTACCTTCTTCGTAC 58.762 50.000 0.00 0.00 37.25 3.67
3203 3681 2.622942 ACCGTTGTACCTTCTTCGTACA 59.377 45.455 0.00 0.00 43.24 2.90
3216 3694 6.347725 CCTTCTTCGTACAAACTCCAAATCAG 60.348 42.308 0.00 0.00 0.00 2.90
3235 3713 8.542132 CAAATCAGGCAAAATATGGTTATTTCG 58.458 33.333 0.00 0.00 37.09 3.46
3276 3754 6.605194 TGCCTGACAAAATATTTGCTACCATA 59.395 34.615 0.39 0.00 0.00 2.74
3278 3756 8.792633 GCCTGACAAAATATTTGCTACCATATA 58.207 33.333 0.39 0.00 0.00 0.86
3310 3789 7.751768 AATCATTAGCTGTATTTCTTAGGCC 57.248 36.000 0.00 0.00 0.00 5.19
3340 3819 9.729023 TGTTGATTAACATGTGAACTTTGTTAG 57.271 29.630 0.00 0.00 41.66 2.34
3360 3839 6.588756 TGTTAGGACAAAGTATTGAACTAGCG 59.411 38.462 0.00 0.00 37.50 4.26
3369 3848 1.568504 TTGAACTAGCGAGGGTGGAT 58.431 50.000 0.00 0.00 0.00 3.41
3370 3849 0.824109 TGAACTAGCGAGGGTGGATG 59.176 55.000 0.00 0.00 0.00 3.51
3392 3871 1.234821 TGAGCCTTACCTGCAAAACG 58.765 50.000 0.00 0.00 0.00 3.60
3410 3889 3.106242 ACGTACTTCAGATTGTGCACA 57.894 42.857 17.42 17.42 0.00 4.57
3435 3929 7.875327 TTTATTAGGCCAGGTTATGAACTTC 57.125 36.000 5.01 0.00 0.00 3.01
3539 4042 3.791539 CTGCAAGCTGCCTACGAG 58.208 61.111 0.00 0.00 44.23 4.18
3554 4057 4.321082 GCCTACGAGTTATCCTACACATCC 60.321 50.000 0.00 0.00 0.00 3.51
3579 4083 5.835113 TTTCCTTGTAGATAATTGCCAGC 57.165 39.130 0.00 0.00 0.00 4.85
3660 4165 8.203937 TCATAAGGTGTAATATGGAAAACACG 57.796 34.615 0.00 0.00 42.45 4.49
3661 4166 7.825270 TCATAAGGTGTAATATGGAAAACACGT 59.175 33.333 0.00 0.00 42.45 4.49
3662 4167 5.873179 AGGTGTAATATGGAAAACACGTG 57.127 39.130 15.48 15.48 42.45 4.49
3663 4168 5.310451 AGGTGTAATATGGAAAACACGTGT 58.690 37.500 17.22 17.22 42.45 4.49
3664 4169 6.465948 AGGTGTAATATGGAAAACACGTGTA 58.534 36.000 23.69 6.02 42.45 2.90
3665 4170 6.935771 AGGTGTAATATGGAAAACACGTGTAA 59.064 34.615 23.69 6.02 42.45 2.41
3666 4171 7.444792 AGGTGTAATATGGAAAACACGTGTAAA 59.555 33.333 23.69 6.39 42.45 2.01
3667 4172 8.074972 GGTGTAATATGGAAAACACGTGTAAAA 58.925 33.333 23.69 6.78 42.45 1.52
3668 4173 9.109533 GTGTAATATGGAAAACACGTGTAAAAG 57.890 33.333 23.69 0.00 33.60 2.27
3669 4174 8.838365 TGTAATATGGAAAACACGTGTAAAAGT 58.162 29.630 23.69 2.10 0.00 2.66
3670 4175 9.667989 GTAATATGGAAAACACGTGTAAAAGTT 57.332 29.630 23.69 9.35 0.00 2.66
3672 4177 9.667989 AATATGGAAAACACGTGTAAAAGTTAC 57.332 29.630 23.69 12.12 0.00 2.50
3673 4178 5.558307 TGGAAAACACGTGTAAAAGTTACG 58.442 37.500 23.69 0.00 42.98 3.18
3674 4179 4.963352 GGAAAACACGTGTAAAAGTTACGG 59.037 41.667 23.69 0.00 41.74 4.02
3675 4180 3.590720 AACACGTGTAAAAGTTACGGC 57.409 42.857 23.69 0.00 41.74 5.68
3676 4181 1.866601 ACACGTGTAAAAGTTACGGCC 59.133 47.619 21.98 0.00 41.74 6.13
3677 4182 1.195222 CACGTGTAAAAGTTACGGCCC 59.805 52.381 7.58 0.00 41.74 5.80
3678 4183 1.202627 ACGTGTAAAAGTTACGGCCCA 60.203 47.619 0.00 0.00 41.74 5.36
3679 4184 1.872313 CGTGTAAAAGTTACGGCCCAA 59.128 47.619 0.00 0.00 34.43 4.12
3680 4185 2.290093 CGTGTAAAAGTTACGGCCCAAA 59.710 45.455 0.00 0.00 34.43 3.28
3681 4186 3.243002 CGTGTAAAAGTTACGGCCCAAAA 60.243 43.478 0.00 0.00 34.43 2.44
3682 4187 4.557097 CGTGTAAAAGTTACGGCCCAAAAT 60.557 41.667 0.00 0.00 34.43 1.82
3683 4188 4.682401 GTGTAAAAGTTACGGCCCAAAATG 59.318 41.667 0.00 0.00 0.00 2.32
3684 4189 4.583489 TGTAAAAGTTACGGCCCAAAATGA 59.417 37.500 0.00 0.00 0.00 2.57
3685 4190 3.653539 AAAGTTACGGCCCAAAATGAC 57.346 42.857 0.00 0.00 0.00 3.06
3686 4191 1.161843 AGTTACGGCCCAAAATGACG 58.838 50.000 0.00 0.00 0.00 4.35
3687 4192 1.158434 GTTACGGCCCAAAATGACGA 58.842 50.000 0.00 0.00 0.00 4.20
3688 4193 1.536331 GTTACGGCCCAAAATGACGAA 59.464 47.619 0.00 0.00 0.00 3.85
3689 4194 1.158434 TACGGCCCAAAATGACGAAC 58.842 50.000 0.00 0.00 0.00 3.95
3690 4195 1.211709 CGGCCCAAAATGACGAACC 59.788 57.895 0.00 0.00 0.00 3.62
3691 4196 1.519751 CGGCCCAAAATGACGAACCA 61.520 55.000 0.00 0.00 0.00 3.67
3692 4197 0.676736 GGCCCAAAATGACGAACCAA 59.323 50.000 0.00 0.00 0.00 3.67
3693 4198 1.275010 GGCCCAAAATGACGAACCAAT 59.725 47.619 0.00 0.00 0.00 3.16
3694 4199 2.606108 GCCCAAAATGACGAACCAATC 58.394 47.619 0.00 0.00 0.00 2.67
3707 4212 4.342352 GAACCAATCGGCTAACTGAAAG 57.658 45.455 0.00 0.00 35.97 2.62
3708 4213 2.711542 ACCAATCGGCTAACTGAAAGG 58.288 47.619 0.00 0.00 34.24 3.11
3709 4214 2.017049 CCAATCGGCTAACTGAAAGGG 58.983 52.381 0.00 0.00 39.30 3.95
3710 4215 2.017049 CAATCGGCTAACTGAAAGGGG 58.983 52.381 0.00 0.00 39.30 4.79
3711 4216 0.107165 ATCGGCTAACTGAAAGGGGC 60.107 55.000 0.00 0.00 39.30 5.80
3712 4217 1.749258 CGGCTAACTGAAAGGGGCC 60.749 63.158 0.00 0.00 41.28 5.80
3713 4218 1.379977 GGCTAACTGAAAGGGGCCC 60.380 63.158 17.12 17.12 39.70 5.80
3714 4219 1.749258 GCTAACTGAAAGGGGCCCG 60.749 63.158 18.95 4.63 39.30 6.13
3715 4220 1.077716 CTAACTGAAAGGGGCCCGG 60.078 63.158 18.95 8.85 39.30 5.73
3716 4221 1.848886 CTAACTGAAAGGGGCCCGGT 61.849 60.000 18.95 9.19 39.30 5.28
3717 4222 1.428718 TAACTGAAAGGGGCCCGGTT 61.429 55.000 18.95 15.98 39.30 4.44
3718 4223 2.117423 CTGAAAGGGGCCCGGTTT 59.883 61.111 18.95 18.15 0.00 3.27
3719 4224 1.533033 CTGAAAGGGGCCCGGTTTT 60.533 57.895 18.95 16.18 0.00 2.43
3720 4225 1.075151 TGAAAGGGGCCCGGTTTTT 60.075 52.632 18.95 12.44 0.00 1.94
3721 4226 1.369692 GAAAGGGGCCCGGTTTTTG 59.630 57.895 18.95 0.00 0.00 2.44
3722 4227 2.107041 GAAAGGGGCCCGGTTTTTGG 62.107 60.000 18.95 0.00 0.00 3.28
3723 4228 2.900269 AAAGGGGCCCGGTTTTTGGT 62.900 55.000 18.95 0.00 0.00 3.67
3724 4229 2.845317 GGGGCCCGGTTTTTGGTT 60.845 61.111 17.79 0.00 0.00 3.67
3725 4230 1.533513 GGGGCCCGGTTTTTGGTTA 60.534 57.895 17.79 0.00 0.00 2.85
3726 4231 1.667151 GGGCCCGGTTTTTGGTTAC 59.333 57.895 5.69 0.00 0.00 2.50
3727 4232 1.286570 GGCCCGGTTTTTGGTTACG 59.713 57.895 0.00 0.00 0.00 3.18
3728 4233 1.286570 GCCCGGTTTTTGGTTACGG 59.713 57.895 0.00 0.00 43.89 4.02
3730 4235 1.958323 CCGGTTTTTGGTTACGGGG 59.042 57.895 0.00 0.00 40.79 5.73
3731 4236 1.525718 CCGGTTTTTGGTTACGGGGG 61.526 60.000 0.00 0.00 40.79 5.40
3732 4237 0.536915 CGGTTTTTGGTTACGGGGGA 60.537 55.000 0.00 0.00 0.00 4.81
3733 4238 1.250328 GGTTTTTGGTTACGGGGGAG 58.750 55.000 0.00 0.00 0.00 4.30
3734 4239 1.479205 GGTTTTTGGTTACGGGGGAGT 60.479 52.381 0.00 0.00 0.00 3.85
3735 4240 2.224744 GGTTTTTGGTTACGGGGGAGTA 60.225 50.000 0.00 0.00 0.00 2.59
3736 4241 3.561960 GGTTTTTGGTTACGGGGGAGTAT 60.562 47.826 0.00 0.00 0.00 2.12
3737 4242 4.081406 GTTTTTGGTTACGGGGGAGTATT 58.919 43.478 0.00 0.00 0.00 1.89
3738 4243 3.353370 TTTGGTTACGGGGGAGTATTG 57.647 47.619 0.00 0.00 0.00 1.90
3739 4244 1.955451 TGGTTACGGGGGAGTATTGT 58.045 50.000 0.00 0.00 0.00 2.71
3740 4245 3.113191 TGGTTACGGGGGAGTATTGTA 57.887 47.619 0.00 0.00 0.00 2.41
3741 4246 2.765699 TGGTTACGGGGGAGTATTGTAC 59.234 50.000 0.00 0.00 0.00 2.90
3742 4247 2.765699 GGTTACGGGGGAGTATTGTACA 59.234 50.000 0.00 0.00 0.00 2.90
3743 4248 3.181472 GGTTACGGGGGAGTATTGTACAG 60.181 52.174 0.00 0.00 0.00 2.74
3744 4249 1.492764 ACGGGGGAGTATTGTACAGG 58.507 55.000 0.00 0.00 0.00 4.00
3745 4250 1.273438 ACGGGGGAGTATTGTACAGGT 60.273 52.381 0.00 0.00 0.00 4.00
3746 4251 1.138266 CGGGGGAGTATTGTACAGGTG 59.862 57.143 0.00 0.00 0.00 4.00
3747 4252 2.193993 GGGGGAGTATTGTACAGGTGT 58.806 52.381 0.00 0.00 0.00 4.16
3748 4253 3.377573 GGGGGAGTATTGTACAGGTGTA 58.622 50.000 0.00 0.00 0.00 2.90
3749 4254 3.971971 GGGGGAGTATTGTACAGGTGTAT 59.028 47.826 0.00 0.00 32.54 2.29
3750 4255 5.149976 GGGGGAGTATTGTACAGGTGTATA 58.850 45.833 0.00 0.00 32.54 1.47
3751 4256 5.011431 GGGGGAGTATTGTACAGGTGTATAC 59.989 48.000 6.55 6.55 32.54 1.47
3752 4257 5.599656 GGGGAGTATTGTACAGGTGTATACA 59.400 44.000 14.18 0.08 32.54 2.29
3753 4258 6.239232 GGGGAGTATTGTACAGGTGTATACAG 60.239 46.154 5.62 0.00 33.03 2.74
3754 4259 6.214399 GGAGTATTGTACAGGTGTATACAGC 58.786 44.000 24.29 24.29 44.12 4.40
3765 4270 5.446031 GGTGTATACAGCTGTAAAACGAC 57.554 43.478 29.26 23.98 40.88 4.34
3766 4271 4.030977 GGTGTATACAGCTGTAAAACGACG 59.969 45.833 29.26 0.00 40.88 5.12
3767 4272 4.618489 GTGTATACAGCTGTAAAACGACGT 59.382 41.667 29.26 13.40 33.76 4.34
3768 4273 5.117592 GTGTATACAGCTGTAAAACGACGTT 59.882 40.000 29.26 12.70 33.76 3.99
3769 4274 4.898328 ATACAGCTGTAAAACGACGTTC 57.102 40.909 29.26 2.16 33.76 3.95
3770 4275 1.862827 ACAGCTGTAAAACGACGTTCC 59.137 47.619 20.16 5.92 0.00 3.62
3771 4276 1.862201 CAGCTGTAAAACGACGTTCCA 59.138 47.619 14.58 10.13 0.00 3.53
3772 4277 2.285756 CAGCTGTAAAACGACGTTCCAA 59.714 45.455 14.58 0.00 0.00 3.53
3773 4278 2.542595 AGCTGTAAAACGACGTTCCAAG 59.457 45.455 14.58 10.38 0.00 3.61
3774 4279 2.899977 CTGTAAAACGACGTTCCAAGC 58.100 47.619 14.58 4.05 0.00 4.01
3775 4280 1.258458 TGTAAAACGACGTTCCAAGCG 59.742 47.619 14.58 0.00 0.00 4.68
3776 4281 0.860533 TAAAACGACGTTCCAAGCGG 59.139 50.000 14.58 0.00 0.00 5.52
3777 4282 1.778027 AAAACGACGTTCCAAGCGGG 61.778 55.000 14.58 0.00 38.37 6.13
3778 4283 4.675029 ACGACGTTCCAAGCGGGG 62.675 66.667 0.00 0.00 37.22 5.73
3782 4287 4.090588 CGTTCCAAGCGGGGCCTA 62.091 66.667 0.84 0.00 37.22 3.93
3783 4288 2.353573 GTTCCAAGCGGGGCCTAA 59.646 61.111 0.84 0.00 37.22 2.69
3784 4289 1.303806 GTTCCAAGCGGGGCCTAAA 60.304 57.895 0.84 0.00 37.22 1.85
3785 4290 0.683179 GTTCCAAGCGGGGCCTAAAT 60.683 55.000 0.84 0.00 37.22 1.40
3786 4291 0.920438 TTCCAAGCGGGGCCTAAATA 59.080 50.000 0.84 0.00 37.22 1.40
3789 4294 1.478654 CCAAGCGGGGCCTAAATATGT 60.479 52.381 0.84 0.00 0.00 2.29
3803 4308 8.754080 GGCCTAAATATGTACATCTGATAGAGT 58.246 37.037 12.68 0.00 0.00 3.24
3845 4353 5.794894 TGAGGTTATTCAGGTTGAGTCTTC 58.205 41.667 0.00 0.00 0.00 2.87
3846 4354 5.544176 TGAGGTTATTCAGGTTGAGTCTTCT 59.456 40.000 0.00 0.00 0.00 2.85
3847 4355 6.043243 TGAGGTTATTCAGGTTGAGTCTTCTT 59.957 38.462 0.00 0.00 0.00 2.52
3940 4448 1.903183 TCCCACATGGACGATGTAACA 59.097 47.619 2.49 0.00 43.96 2.41
4120 4632 8.304596 TGTTTTGTTAACTTGTTTGGTGACATA 58.695 29.630 7.22 0.00 42.32 2.29
4201 4722 5.395324 CCACTATAGTTTCTCGATTGGGTGT 60.395 44.000 1.56 0.00 0.00 4.16
4406 4932 9.067986 GTCCTTTAAATACTTAGGGATTCATGG 57.932 37.037 0.00 0.00 0.00 3.66
4431 4963 8.984764 GGTACAATAGTTGAATTGCACGATATA 58.015 33.333 0.00 0.00 39.93 0.86
4447 4979 6.129431 GCACGATATATTGTCACTTGAGTACG 60.129 42.308 2.33 0.00 0.00 3.67
4448 4980 7.130269 CACGATATATTGTCACTTGAGTACGA 58.870 38.462 2.33 0.00 0.00 3.43
4449 4981 7.321509 CACGATATATTGTCACTTGAGTACGAG 59.678 40.741 2.33 0.00 0.00 4.18
4450 4982 6.303496 CGATATATTGTCACTTGAGTACGAGC 59.697 42.308 0.00 0.00 0.00 5.03
4505 5040 4.334481 ACGGTTCTCCCTAAATTTATTGCG 59.666 41.667 0.00 0.00 0.00 4.85
4569 5105 8.462589 TTGCTATTCAATAGGTTATGAATGCA 57.537 30.769 6.55 13.18 43.95 3.96
4665 5201 8.762481 AAACACTAAGGTAATTTCTTTCCACT 57.238 30.769 0.16 0.00 0.00 4.00
4668 5204 7.230712 ACACTAAGGTAATTTCTTTCCACTTGG 59.769 37.037 0.00 0.00 0.00 3.61
4689 5555 9.057089 ACTTGGAGTTAGTAAAAGATTCTGTTG 57.943 33.333 0.00 0.00 0.00 3.33
4752 5618 7.939039 ACCTCTGTTTTGAGAATATTTCTGACA 59.061 33.333 0.00 0.00 40.87 3.58
4848 5922 4.542735 AGTTTAACATTACGCTGTTTGCC 58.457 39.130 0.00 0.00 39.88 4.52
4990 6064 6.098552 GCTTAACCTTATCTTGTACTCCCTCT 59.901 42.308 0.00 0.00 0.00 3.69
4991 6065 5.941555 AACCTTATCTTGTACTCCCTCTG 57.058 43.478 0.00 0.00 0.00 3.35
4993 6067 6.088541 ACCTTATCTTGTACTCCCTCTGTA 57.911 41.667 0.00 0.00 0.00 2.74
4994 6068 6.500336 ACCTTATCTTGTACTCCCTCTGTAA 58.500 40.000 0.00 0.00 0.00 2.41
4995 6069 6.958192 ACCTTATCTTGTACTCCCTCTGTAAA 59.042 38.462 0.00 0.00 0.00 2.01
4996 6070 7.093421 ACCTTATCTTGTACTCCCTCTGTAAAC 60.093 40.741 0.00 0.00 0.00 2.01
4997 6071 7.124448 CCTTATCTTGTACTCCCTCTGTAAACT 59.876 40.741 0.00 0.00 0.00 2.66
5002 6076 9.710818 TCTTGTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
5008 6082 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5009 6083 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
5010 6084 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
5060 6141 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
5061 6142 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
5128 6210 9.874205 CTGATCATGGTTTGGTATTGTTTAATT 57.126 29.630 0.00 0.00 0.00 1.40
5194 6519 1.108727 TGGGTGTGGCTTTGCTCTTG 61.109 55.000 0.00 0.00 0.00 3.02
5197 6522 0.746659 GTGTGGCTTTGCTCTTGGTT 59.253 50.000 0.00 0.00 0.00 3.67
5222 6547 4.963276 TCTTTATCATCAAAAGGCGTGG 57.037 40.909 0.00 0.00 35.18 4.94
5224 6549 4.394920 TCTTTATCATCAAAAGGCGTGGTC 59.605 41.667 0.00 0.00 35.18 4.02
5272 6601 1.192534 GACGAGTTGCCTTTTCGACTG 59.807 52.381 0.00 0.00 37.73 3.51
5283 6612 4.298332 CCTTTTCGACTGTTTTTCCATGG 58.702 43.478 4.97 4.97 0.00 3.66
5355 6684 9.748708 TCCTTTCAAATTCTTACATTTGTTCTG 57.251 29.630 6.15 0.00 42.51 3.02
5368 6697 5.360714 ACATTTGTTCTGTTGACAGTTGGAT 59.639 36.000 10.66 0.00 44.12 3.41
5380 6709 5.547465 TGACAGTTGGATTACTTTGTCGAT 58.453 37.500 0.00 0.00 0.00 3.59
5440 6769 2.358737 GGCACAAGTGAGGGGACG 60.359 66.667 4.04 0.00 0.00 4.79
5473 6802 1.879380 CCTGTGAAAAACGATCCTGCA 59.121 47.619 0.00 0.00 0.00 4.41
5647 7154 1.297967 CTCGGACGATGTCGCAGAG 60.298 63.158 1.77 7.30 44.43 3.35
5648 7155 1.706287 CTCGGACGATGTCGCAGAGA 61.706 60.000 15.65 6.00 44.43 3.10
5756 7263 4.081254 CCAAGATTGATGTCTGGTCTCTCA 60.081 45.833 0.00 0.00 0.00 3.27
5780 7287 8.147704 TCAGTTAACGCATCCATATGAGATTTA 58.852 33.333 3.65 0.00 36.50 1.40
5817 7325 2.905681 GATAACGGCGGGTCCCTT 59.094 61.111 13.24 0.00 0.00 3.95
5911 7463 0.865769 AGTGCGTTTGTCGTGATTCC 59.134 50.000 0.00 0.00 42.13 3.01
5912 7464 0.865769 GTGCGTTTGTCGTGATTCCT 59.134 50.000 0.00 0.00 42.13 3.36
5913 7465 1.136336 GTGCGTTTGTCGTGATTCCTC 60.136 52.381 0.00 0.00 42.13 3.71
5914 7466 0.442699 GCGTTTGTCGTGATTCCTCC 59.557 55.000 0.00 0.00 42.13 4.30
5917 7469 2.347731 GTTTGTCGTGATTCCTCCTCC 58.652 52.381 0.00 0.00 0.00 4.30
6031 7591 8.671384 TCCACTTGTATAGTTGCATTATAACC 57.329 34.615 0.00 0.00 33.85 2.85
6041 7601 7.259290 AGTTGCATTATAACCGAACCTTATG 57.741 36.000 0.00 0.00 0.00 1.90
6044 7604 6.588204 TGCATTATAACCGAACCTTATGACT 58.412 36.000 0.00 0.00 0.00 3.41
6126 7693 8.439993 TGCAAACATACTAAAACTGTGTCTTA 57.560 30.769 0.00 0.00 0.00 2.10
6127 7694 9.062524 TGCAAACATACTAAAACTGTGTCTTAT 57.937 29.630 0.00 0.00 0.00 1.73
6128 7695 9.329913 GCAAACATACTAAAACTGTGTCTTATG 57.670 33.333 0.00 0.00 0.00 1.90
6150 7721 7.865706 ATGATGAACGAATACTTTTTAGGCT 57.134 32.000 0.00 0.00 0.00 4.58
6171 7742 4.319549 GCTAAAGGCGTAGGTATGCAATTC 60.320 45.833 0.00 0.00 39.92 2.17
6178 7749 2.348411 AGGTATGCAATTCTTCCCCG 57.652 50.000 0.00 0.00 0.00 5.73
6236 7807 4.041723 GCCAATGGTACGCAATTATTCAC 58.958 43.478 0.00 0.00 0.00 3.18
6241 7812 7.415765 CCAATGGTACGCAATTATTCACCTTAA 60.416 37.037 0.00 0.00 0.00 1.85
6242 7813 7.817418 ATGGTACGCAATTATTCACCTTAAT 57.183 32.000 0.00 0.00 0.00 1.40
6243 7814 7.633193 TGGTACGCAATTATTCACCTTAATT 57.367 32.000 0.00 0.00 31.13 1.40
6244 7815 8.734218 TGGTACGCAATTATTCACCTTAATTA 57.266 30.769 0.00 0.00 30.18 1.40
6342 7913 9.099454 GTCTCTAGGTTTACAATTGTTATGAGG 57.901 37.037 17.78 2.94 0.00 3.86
6345 7916 9.226606 TCTAGGTTTACAATTGTTATGAGGTTG 57.773 33.333 17.78 0.96 0.00 3.77
6458 8030 1.686110 CCCCAAGACTCGTAGGGCT 60.686 63.158 0.00 0.00 40.07 5.19
6465 8037 2.853705 AGACTCGTAGGGCTGTAGATC 58.146 52.381 0.00 0.00 0.00 2.75
6472 8044 0.820074 AGGGCTGTAGATCGAGACCG 60.820 60.000 8.26 0.00 42.97 4.79
6480 8052 0.179134 AGATCGAGACCGCCTTTTCG 60.179 55.000 0.00 0.00 35.37 3.46
6481 8053 1.753468 GATCGAGACCGCCTTTTCGC 61.753 60.000 0.00 0.00 35.37 4.70
6491 8063 0.955905 GCCTTTTCGCAAACTACCCA 59.044 50.000 0.00 0.00 0.00 4.51
6566 8143 8.783660 TCTCTCCAATCCATATTACTACTTGT 57.216 34.615 0.00 0.00 0.00 3.16
6567 8144 9.213777 TCTCTCCAATCCATATTACTACTTGTT 57.786 33.333 0.00 0.00 0.00 2.83
6569 8146 8.768397 TCTCCAATCCATATTACTACTTGTTGT 58.232 33.333 0.00 0.00 0.00 3.32
6582 8159 6.351327 CTACTTGTTGTAGCTTTATGGAGC 57.649 41.667 0.00 0.00 41.68 4.70
6606 8184 6.541278 GCGTAGGGAGTAATTTTATTTGGTCT 59.459 38.462 0.00 0.00 0.00 3.85
6609 8187 7.939784 AGGGAGTAATTTTATTTGGTCTGTC 57.060 36.000 0.00 0.00 0.00 3.51
6630 8208 0.456221 ATTGGTACTCGCGTCCTCTG 59.544 55.000 5.77 0.00 0.00 3.35
6633 8211 1.025647 GGTACTCGCGTCCTCTGTCT 61.026 60.000 5.77 0.00 0.00 3.41
6640 8218 1.604278 CGCGTCCTCTGTCTATCATCA 59.396 52.381 0.00 0.00 0.00 3.07
6641 8219 2.227626 CGCGTCCTCTGTCTATCATCAT 59.772 50.000 0.00 0.00 0.00 2.45
6642 8220 3.573598 GCGTCCTCTGTCTATCATCATG 58.426 50.000 0.00 0.00 0.00 3.07
6652 8231 3.993081 GTCTATCATCATGCCCGAGAAAG 59.007 47.826 0.00 0.00 0.00 2.62
6658 8237 0.602562 CATGCCCGAGAAAGCCAAAA 59.397 50.000 0.00 0.00 0.00 2.44
6663 8242 1.269569 CCCGAGAAAGCCAAAACCAAC 60.270 52.381 0.00 0.00 0.00 3.77
6664 8243 1.407258 CCGAGAAAGCCAAAACCAACA 59.593 47.619 0.00 0.00 0.00 3.33
6676 8255 4.445162 CCAAAACCAACACTCACCTACCTA 60.445 45.833 0.00 0.00 0.00 3.08
6677 8256 5.127491 CAAAACCAACACTCACCTACCTAA 58.873 41.667 0.00 0.00 0.00 2.69
6678 8257 5.578157 AAACCAACACTCACCTACCTAAT 57.422 39.130 0.00 0.00 0.00 1.73
6679 8258 6.691255 AAACCAACACTCACCTACCTAATA 57.309 37.500 0.00 0.00 0.00 0.98
6680 8259 5.934402 ACCAACACTCACCTACCTAATAG 57.066 43.478 0.00 0.00 0.00 1.73
6681 8260 4.161754 ACCAACACTCACCTACCTAATAGC 59.838 45.833 0.00 0.00 0.00 2.97
6682 8261 4.443034 CCAACACTCACCTACCTAATAGCC 60.443 50.000 0.00 0.00 0.00 3.93
6683 8262 3.990369 ACACTCACCTACCTAATAGCCA 58.010 45.455 0.00 0.00 0.00 4.75
6684 8263 4.359105 ACACTCACCTACCTAATAGCCAA 58.641 43.478 0.00 0.00 0.00 4.52
6685 8264 4.161754 ACACTCACCTACCTAATAGCCAAC 59.838 45.833 0.00 0.00 0.00 3.77
6686 8265 3.710165 ACTCACCTACCTAATAGCCAACC 59.290 47.826 0.00 0.00 0.00 3.77
6687 8266 3.967987 CTCACCTACCTAATAGCCAACCT 59.032 47.826 0.00 0.00 0.00 3.50
6688 8267 3.709653 TCACCTACCTAATAGCCAACCTG 59.290 47.826 0.00 0.00 0.00 4.00
6689 8268 3.046374 ACCTACCTAATAGCCAACCTGG 58.954 50.000 0.00 0.00 41.55 4.45
6690 8269 3.046374 CCTACCTAATAGCCAACCTGGT 58.954 50.000 0.00 0.00 40.46 4.00
6691 8270 3.181454 CCTACCTAATAGCCAACCTGGTG 60.181 52.174 0.00 0.00 40.46 4.17
6692 8271 2.557869 ACCTAATAGCCAACCTGGTGA 58.442 47.619 0.00 0.00 40.46 4.02
6693 8272 2.505819 ACCTAATAGCCAACCTGGTGAG 59.494 50.000 0.00 0.00 40.46 3.51
6694 8273 2.771943 CCTAATAGCCAACCTGGTGAGA 59.228 50.000 0.00 0.00 40.46 3.27
6695 8274 3.181461 CCTAATAGCCAACCTGGTGAGAG 60.181 52.174 0.00 0.00 40.46 3.20
6696 8275 2.254152 ATAGCCAACCTGGTGAGAGA 57.746 50.000 0.00 0.00 40.46 3.10
6697 8276 2.024176 TAGCCAACCTGGTGAGAGAA 57.976 50.000 0.00 0.00 40.46 2.87
6698 8277 0.689623 AGCCAACCTGGTGAGAGAAG 59.310 55.000 0.00 0.00 40.46 2.85
6699 8278 0.957888 GCCAACCTGGTGAGAGAAGC 60.958 60.000 0.00 0.00 40.46 3.86
6700 8279 0.671781 CCAACCTGGTGAGAGAAGCG 60.672 60.000 0.00 0.00 31.35 4.68
6701 8280 0.034059 CAACCTGGTGAGAGAAGCGT 59.966 55.000 0.00 0.00 0.00 5.07
6702 8281 0.034059 AACCTGGTGAGAGAAGCGTG 59.966 55.000 0.00 0.00 0.00 5.34
6703 8282 1.739562 CCTGGTGAGAGAAGCGTGC 60.740 63.158 0.00 0.00 0.00 5.34
6704 8283 1.291588 CTGGTGAGAGAAGCGTGCT 59.708 57.895 0.00 0.00 0.00 4.40
6705 8284 0.528017 CTGGTGAGAGAAGCGTGCTA 59.472 55.000 0.00 0.00 0.00 3.49
6706 8285 0.966179 TGGTGAGAGAAGCGTGCTAA 59.034 50.000 0.00 0.00 0.00 3.09
6707 8286 1.550524 TGGTGAGAGAAGCGTGCTAAT 59.449 47.619 0.00 0.00 0.00 1.73
6708 8287 1.929836 GGTGAGAGAAGCGTGCTAATG 59.070 52.381 0.00 0.00 0.00 1.90
6709 8288 2.611518 GTGAGAGAAGCGTGCTAATGT 58.388 47.619 0.00 0.00 0.00 2.71
6710 8289 2.996621 GTGAGAGAAGCGTGCTAATGTT 59.003 45.455 0.00 0.00 0.00 2.71
6711 8290 3.061429 GTGAGAGAAGCGTGCTAATGTTC 59.939 47.826 0.00 0.00 0.00 3.18
6712 8291 3.254060 GAGAGAAGCGTGCTAATGTTCA 58.746 45.455 0.00 0.00 0.00 3.18
6713 8292 3.257393 AGAGAAGCGTGCTAATGTTCAG 58.743 45.455 0.00 0.00 0.00 3.02
6714 8293 3.056536 AGAGAAGCGTGCTAATGTTCAGA 60.057 43.478 0.00 0.00 0.00 3.27
6715 8294 3.257393 AGAAGCGTGCTAATGTTCAGAG 58.743 45.455 0.00 0.00 0.00 3.35
6716 8295 2.015736 AGCGTGCTAATGTTCAGAGG 57.984 50.000 0.00 0.00 0.00 3.69
6717 8296 1.276421 AGCGTGCTAATGTTCAGAGGT 59.724 47.619 0.00 0.00 0.00 3.85
6718 8297 2.076863 GCGTGCTAATGTTCAGAGGTT 58.923 47.619 0.00 0.00 0.00 3.50
6719 8298 2.159653 GCGTGCTAATGTTCAGAGGTTG 60.160 50.000 0.00 0.00 0.00 3.77
6720 8299 3.325870 CGTGCTAATGTTCAGAGGTTGA 58.674 45.455 0.00 0.00 0.00 3.18
6721 8300 3.935203 CGTGCTAATGTTCAGAGGTTGAT 59.065 43.478 0.00 0.00 35.27 2.57
6722 8301 4.393062 CGTGCTAATGTTCAGAGGTTGATT 59.607 41.667 0.00 0.00 35.27 2.57
6723 8302 5.106555 CGTGCTAATGTTCAGAGGTTGATTT 60.107 40.000 0.00 0.00 35.27 2.17
6724 8303 6.568462 CGTGCTAATGTTCAGAGGTTGATTTT 60.568 38.462 0.00 0.00 35.27 1.82
6725 8304 6.583806 GTGCTAATGTTCAGAGGTTGATTTTG 59.416 38.462 0.00 0.00 35.27 2.44
6726 8305 6.489700 TGCTAATGTTCAGAGGTTGATTTTGA 59.510 34.615 0.00 0.00 35.27 2.69
6727 8306 7.014134 TGCTAATGTTCAGAGGTTGATTTTGAA 59.986 33.333 0.00 0.00 35.27 2.69
6728 8307 7.867403 GCTAATGTTCAGAGGTTGATTTTGAAA 59.133 33.333 0.00 0.00 35.27 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.486726 CTTTCATAAGTCCCTCGGGCT 59.513 52.381 0.00 0.00 34.68 5.19
19 20 9.630098 AATGTTAATGTTGCACTCTTTCATAAG 57.370 29.630 0.00 0.00 0.00 1.73
71 72 1.341531 CGTCAGTTCCCAGTTGACTCT 59.658 52.381 2.84 0.00 39.18 3.24
80 81 0.765135 TTCCCCTTCGTCAGTTCCCA 60.765 55.000 0.00 0.00 0.00 4.37
83 84 2.289444 TGTGATTCCCCTTCGTCAGTTC 60.289 50.000 0.00 0.00 0.00 3.01
131 133 5.463392 GCAATGATAGAGACATCGCAACTTA 59.537 40.000 0.00 0.00 29.47 2.24
148 150 8.500753 TGTAACTATTTTAAGACCGCAATGAT 57.499 30.769 0.00 0.00 0.00 2.45
155 157 9.075519 TGTAACGATGTAACTATTTTAAGACCG 57.924 33.333 0.00 0.00 0.00 4.79
247 249 4.476628 ACGGTTTCCTCATAACGGTAAT 57.523 40.909 0.00 0.00 37.31 1.89
248 250 3.959535 ACGGTTTCCTCATAACGGTAA 57.040 42.857 0.00 0.00 37.31 2.85
249 251 4.269183 TCTACGGTTTCCTCATAACGGTA 58.731 43.478 0.00 0.00 39.07 4.02
250 252 3.091545 TCTACGGTTTCCTCATAACGGT 58.908 45.455 0.00 0.00 40.61 4.83
251 253 3.788333 TCTACGGTTTCCTCATAACGG 57.212 47.619 0.00 0.00 33.56 4.44
252 254 6.069684 AGTATCTACGGTTTCCTCATAACG 57.930 41.667 0.00 0.00 0.00 3.18
274 276 2.085320 CCGGTCGATATCCCTACAGAG 58.915 57.143 0.00 0.00 0.00 3.35
277 279 0.479815 ACCCGGTCGATATCCCTACA 59.520 55.000 0.00 0.00 0.00 2.74
286 288 1.205966 TTAAATGGGACCCGGTCGAT 58.794 50.000 11.55 3.37 32.65 3.59
289 291 2.304092 GGAATTAAATGGGACCCGGTC 58.696 52.381 9.30 9.30 0.00 4.79
348 358 5.893824 AGCTTTATAGTTCATTTTCCCCAGG 59.106 40.000 0.00 0.00 0.00 4.45
352 362 7.809546 AGCTAGCTTTATAGTTCATTTTCCC 57.190 36.000 12.68 0.00 0.00 3.97
367 377 5.900123 TCCATAAGTCTCCTTAGCTAGCTTT 59.100 40.000 24.88 10.86 36.63 3.51
379 389 0.824759 AGTGGCGTCCATAAGTCTCC 59.175 55.000 1.90 0.00 35.28 3.71
380 390 2.674796 AAGTGGCGTCCATAAGTCTC 57.325 50.000 1.90 0.00 35.28 3.36
381 391 4.755266 AATAAGTGGCGTCCATAAGTCT 57.245 40.909 1.90 0.00 35.28 3.24
410 431 5.222048 TGGTGGGCTATTAGGGATGTAAATC 60.222 44.000 0.00 0.00 0.00 2.17
411 432 4.667858 TGGTGGGCTATTAGGGATGTAAAT 59.332 41.667 0.00 0.00 0.00 1.40
412 433 4.048600 TGGTGGGCTATTAGGGATGTAAA 58.951 43.478 0.00 0.00 0.00 2.01
413 434 3.393278 GTGGTGGGCTATTAGGGATGTAA 59.607 47.826 0.00 0.00 0.00 2.41
428 449 0.600255 GTCTCTCACGTTGTGGTGGG 60.600 60.000 0.00 0.00 39.83 4.61
440 461 1.269723 ACAAAGTCGCGATGTCTCTCA 59.730 47.619 14.06 0.00 0.00 3.27
450 471 1.837747 GTGACAAACAACAAAGTCGCG 59.162 47.619 0.00 0.00 32.70 5.87
463 484 0.534203 GCCACCTTCCTCGTGACAAA 60.534 55.000 0.00 0.00 32.77 2.83
468 489 3.691342 TCGGCCACCTTCCTCGTG 61.691 66.667 2.24 0.00 0.00 4.35
494 515 1.493950 GGTCGAATGCATGCTCGAGG 61.494 60.000 26.57 10.34 44.19 4.63
496 517 0.528466 GAGGTCGAATGCATGCTCGA 60.528 55.000 23.43 23.43 41.54 4.04
501 522 1.741706 AGCTTTGAGGTCGAATGCATG 59.258 47.619 0.00 0.00 0.00 4.06
516 537 7.327214 TGTGTTTTCAAGTTAAATCCAGCTTT 58.673 30.769 0.00 0.00 0.00 3.51
739 774 2.130073 AAAAAGAGACGCTTGCCCGC 62.130 55.000 0.00 0.00 36.80 6.13
911 1011 3.426568 GCACCTTGTCGCAGGAGC 61.427 66.667 2.45 2.59 42.41 4.70
921 1021 2.791383 TGTCCAAAAATCGCACCTTG 57.209 45.000 0.00 0.00 0.00 3.61
948 1048 4.702131 ACCCAGAAAGAACAATCAGCATAC 59.298 41.667 0.00 0.00 0.00 2.39
949 1049 4.701651 CACCCAGAAAGAACAATCAGCATA 59.298 41.667 0.00 0.00 0.00 3.14
971 1071 2.305928 CCCTTGAATCAACACACACCA 58.694 47.619 0.00 0.00 0.00 4.17
1064 1164 2.603652 GGGGTCAGGGTCAGGGAAC 61.604 68.421 0.00 0.00 0.00 3.62
1065 1165 2.204090 GGGGTCAGGGTCAGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
1066 1166 4.348495 GGGGGTCAGGGTCAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1124 1231 1.168714 GTTGGTCTGGATGCTGTTCC 58.831 55.000 0.00 0.00 36.24 3.62
1204 1311 1.668419 ATCTGCAGCCAAACCGTATC 58.332 50.000 9.47 0.00 0.00 2.24
1206 1313 1.448985 GAATCTGCAGCCAAACCGTA 58.551 50.000 9.47 0.00 0.00 4.02
1207 1314 1.244019 GGAATCTGCAGCCAAACCGT 61.244 55.000 9.47 0.00 0.00 4.83
1208 1315 1.508088 GGAATCTGCAGCCAAACCG 59.492 57.895 9.47 0.00 0.00 4.44
1209 1316 1.607801 GGGGAATCTGCAGCCAAACC 61.608 60.000 9.47 7.27 0.00 3.27
1228 1335 6.947464 TCTTATCTGAACCCAAGTAGAAAGG 58.053 40.000 0.00 0.00 0.00 3.11
1229 1336 7.878127 TGTTCTTATCTGAACCCAAGTAGAAAG 59.122 37.037 5.15 0.00 43.96 2.62
1230 1337 7.741785 TGTTCTTATCTGAACCCAAGTAGAAA 58.258 34.615 5.15 0.00 43.96 2.52
1277 1418 3.143728 GAGCAACGGGAAGGAAAAACTA 58.856 45.455 0.00 0.00 0.00 2.24
1323 1464 9.698309 ATATATCAAGTACTGTAGCATGTGTTC 57.302 33.333 0.00 0.00 0.00 3.18
1929 2071 0.796312 GCGATGACGGAGCTGAAAAA 59.204 50.000 0.00 0.00 40.15 1.94
1959 2101 1.085091 CATCACCAGAGCAAGAGCAC 58.915 55.000 0.00 0.00 45.49 4.40
2030 2172 2.959516 TCAACAATCAGGACGTAGCAG 58.040 47.619 0.00 0.00 0.00 4.24
2031 2173 3.394674 TTCAACAATCAGGACGTAGCA 57.605 42.857 0.00 0.00 0.00 3.49
2032 2174 4.213482 ACTTTTCAACAATCAGGACGTAGC 59.787 41.667 0.00 0.00 0.00 3.58
2069 2211 8.760569 CACGCACAGTCATGTAATACATTAATA 58.239 33.333 2.67 0.00 36.53 0.98
2076 2218 5.492854 CAATCACGCACAGTCATGTAATAC 58.507 41.667 0.00 0.00 37.65 1.89
2078 2220 3.181507 GCAATCACGCACAGTCATGTAAT 60.182 43.478 0.00 0.00 37.65 1.89
2079 2221 2.159430 GCAATCACGCACAGTCATGTAA 59.841 45.455 0.00 0.00 37.65 2.41
2083 2225 0.606130 TGGCAATCACGCACAGTCAT 60.606 50.000 0.00 0.00 0.00 3.06
2087 2229 2.068837 AATTTGGCAATCACGCACAG 57.931 45.000 0.00 0.00 0.00 3.66
2101 2243 7.424803 TGTGAATCTGGTACTGACAAAATTTG 58.575 34.615 3.89 3.89 39.59 2.32
2104 2246 7.170965 AGATGTGAATCTGGTACTGACAAAAT 58.829 34.615 0.00 0.00 39.59 1.82
2113 2255 7.868415 GGAACTATGTAGATGTGAATCTGGTAC 59.132 40.741 0.00 0.00 32.36 3.34
2118 2260 8.546083 AGAAGGAACTATGTAGATGTGAATCT 57.454 34.615 0.00 0.00 38.49 2.40
2119 2261 9.606631 AAAGAAGGAACTATGTAGATGTGAATC 57.393 33.333 0.00 0.00 38.49 2.52
2154 2296 9.486123 ACATACTGATGAGCTGGAATATAGTAT 57.514 33.333 0.00 0.00 36.48 2.12
2155 2297 8.885693 ACATACTGATGAGCTGGAATATAGTA 57.114 34.615 0.00 0.00 36.48 1.82
2156 2298 7.789202 ACATACTGATGAGCTGGAATATAGT 57.211 36.000 0.00 0.00 36.48 2.12
2157 2299 9.149225 GAAACATACTGATGAGCTGGAATATAG 57.851 37.037 0.00 0.00 36.48 1.31
2168 2310 7.412781 GCAGAAACTGAGAAACATACTGATGAG 60.413 40.741 2.81 0.00 33.55 2.90
2228 2373 7.492344 CCCAAGAATTAACAATTAATGCCTCAC 59.508 37.037 0.00 0.00 36.06 3.51
2229 2374 7.398618 TCCCAAGAATTAACAATTAATGCCTCA 59.601 33.333 0.00 0.00 36.06 3.86
2230 2375 7.781056 TCCCAAGAATTAACAATTAATGCCTC 58.219 34.615 0.00 0.00 36.06 4.70
2231 2376 7.732222 TCCCAAGAATTAACAATTAATGCCT 57.268 32.000 0.00 0.00 36.06 4.75
2340 2487 2.766263 AGTTGTCCAGTGTGAACAGAGA 59.234 45.455 0.00 0.00 0.00 3.10
2395 2542 7.395772 TCAGTGGAAGGAATTTGTATTTGCATA 59.604 33.333 0.00 0.00 0.00 3.14
2406 2642 9.753674 TTATTTCTATGTCAGTGGAAGGAATTT 57.246 29.630 0.00 0.00 0.00 1.82
2471 2723 4.411540 AGAAGAGATTATGTCCAGTGGCAT 59.588 41.667 18.89 18.89 0.00 4.40
2499 2783 6.127535 CCAGATCAAAACTATGCCAGTGAATT 60.128 38.462 0.00 0.00 37.63 2.17
2608 2917 7.147976 GGCAGACATTTAGAAAACAGTGAATT 58.852 34.615 0.00 0.00 0.00 2.17
2619 2928 7.012704 GCAAAGATATCTGGCAGACATTTAGAA 59.987 37.037 21.37 0.00 0.00 2.10
2896 3240 3.207452 CCAAGGGGTATGGCCTTTC 57.793 57.895 3.32 0.00 37.43 2.62
2915 3380 8.089625 TCTGGGTTCTGTTTCTGAATGATATA 57.910 34.615 0.00 0.00 0.00 0.86
2919 3384 4.705110 TCTGGGTTCTGTTTCTGAATGA 57.295 40.909 0.00 0.00 0.00 2.57
2928 3393 2.170607 CGGTGGATATCTGGGTTCTGTT 59.829 50.000 2.05 0.00 0.00 3.16
2958 3424 7.661968 TCTCAAGCTAGCGTCTAAATCATATT 58.338 34.615 9.55 0.00 0.00 1.28
2978 3444 7.169158 ACAGTCAATTTTTGGAAACTCTCAA 57.831 32.000 0.00 0.00 0.00 3.02
2999 3466 6.625362 AGACACAATCCGATATAGCATACAG 58.375 40.000 0.00 0.00 0.00 2.74
3065 3542 0.819259 GTGTTGAGTGAAGCCAGCCA 60.819 55.000 0.00 0.00 0.00 4.75
3079 3556 1.069296 CACGTATTGGGCTGTGTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
3094 3571 6.367695 CACATCTAGTTTCCAAATCACACGTA 59.632 38.462 0.00 0.00 0.00 3.57
3095 3572 5.179368 CACATCTAGTTTCCAAATCACACGT 59.821 40.000 0.00 0.00 0.00 4.49
3096 3573 5.179368 ACACATCTAGTTTCCAAATCACACG 59.821 40.000 0.00 0.00 0.00 4.49
3097 3574 6.204688 TCACACATCTAGTTTCCAAATCACAC 59.795 38.462 0.00 0.00 0.00 3.82
3098 3575 6.295249 TCACACATCTAGTTTCCAAATCACA 58.705 36.000 0.00 0.00 0.00 3.58
3099 3576 6.801539 TCACACATCTAGTTTCCAAATCAC 57.198 37.500 0.00 0.00 0.00 3.06
3100 3577 6.127925 GCATCACACATCTAGTTTCCAAATCA 60.128 38.462 0.00 0.00 0.00 2.57
3101 3578 6.094603 AGCATCACACATCTAGTTTCCAAATC 59.905 38.462 0.00 0.00 0.00 2.17
3102 3579 5.948162 AGCATCACACATCTAGTTTCCAAAT 59.052 36.000 0.00 0.00 0.00 2.32
3103 3580 5.316167 AGCATCACACATCTAGTTTCCAAA 58.684 37.500 0.00 0.00 0.00 3.28
3104 3581 4.910195 AGCATCACACATCTAGTTTCCAA 58.090 39.130 0.00 0.00 0.00 3.53
3105 3582 4.558226 AGCATCACACATCTAGTTTCCA 57.442 40.909 0.00 0.00 0.00 3.53
3106 3583 5.874810 TGTTAGCATCACACATCTAGTTTCC 59.125 40.000 0.00 0.00 0.00 3.13
3107 3584 6.968131 TGTTAGCATCACACATCTAGTTTC 57.032 37.500 0.00 0.00 0.00 2.78
3108 3585 9.102757 CTTATGTTAGCATCACACATCTAGTTT 57.897 33.333 0.00 0.00 36.58 2.66
3109 3586 8.260818 ACTTATGTTAGCATCACACATCTAGTT 58.739 33.333 0.00 0.00 36.58 2.24
3110 3587 7.786030 ACTTATGTTAGCATCACACATCTAGT 58.214 34.615 0.00 0.00 36.58 2.57
3111 3588 7.383572 GGACTTATGTTAGCATCACACATCTAG 59.616 40.741 0.00 0.00 36.58 2.43
3112 3589 7.069950 AGGACTTATGTTAGCATCACACATCTA 59.930 37.037 0.00 0.00 36.58 1.98
3113 3590 6.051717 GGACTTATGTTAGCATCACACATCT 58.948 40.000 0.00 0.00 36.58 2.90
3114 3591 6.018425 CAGGACTTATGTTAGCATCACACATC 60.018 42.308 0.00 0.00 36.58 3.06
3128 3605 2.185004 AACGCAAGCAGGACTTATGT 57.815 45.000 0.00 0.00 45.62 2.29
3169 3647 1.746787 ACAACGGTCCCACTGTTTTTC 59.253 47.619 0.00 0.00 44.74 2.29
3181 3659 2.428888 ACGAAGAAGGTACAACGGTC 57.571 50.000 0.00 0.00 0.00 4.79
3199 3677 4.846779 TTGCCTGATTTGGAGTTTGTAC 57.153 40.909 0.00 0.00 0.00 2.90
3202 3680 6.314400 CCATATTTTGCCTGATTTGGAGTTTG 59.686 38.462 0.00 0.00 0.00 2.93
3203 3681 6.013466 ACCATATTTTGCCTGATTTGGAGTTT 60.013 34.615 0.00 0.00 31.39 2.66
3235 3713 0.179119 GGCATCATGCTGAACCAAGC 60.179 55.000 10.11 0.00 44.28 4.01
3285 3763 8.436778 TGGCCTAAGAAATACAGCTAATGATTA 58.563 33.333 3.32 0.00 0.00 1.75
3286 3764 7.290061 TGGCCTAAGAAATACAGCTAATGATT 58.710 34.615 3.32 0.00 0.00 2.57
3306 3785 2.969821 TGTTAATCAACACCTGGCCT 57.030 45.000 3.32 0.00 39.75 5.19
3335 3814 6.588756 CGCTAGTTCAATACTTTGTCCTAACA 59.411 38.462 0.00 0.00 38.33 2.41
3340 3819 4.567159 CCTCGCTAGTTCAATACTTTGTCC 59.433 45.833 0.00 0.00 38.33 4.02
3360 3839 1.077429 GGCTCAACCATCCACCCTC 60.077 63.158 0.00 0.00 38.86 4.30
3369 3848 0.476338 TTGCAGGTAAGGCTCAACCA 59.524 50.000 18.21 0.00 43.14 3.67
3370 3849 1.616159 TTTGCAGGTAAGGCTCAACC 58.384 50.000 10.27 10.27 39.61 3.77
3392 3871 9.708222 CTAATAAATGTGCACAATCTGAAGTAC 57.292 33.333 25.72 0.00 0.00 2.73
3410 3889 7.228706 CGAAGTTCATAACCTGGCCTAATAAAT 59.771 37.037 3.32 0.00 0.00 1.40
3435 3929 4.934001 AGCATATAGAGATGAATTGGCACG 59.066 41.667 0.00 0.00 0.00 5.34
3539 4042 5.855045 AGGAAATCGGATGTGTAGGATAAC 58.145 41.667 0.00 0.00 0.00 1.89
3554 4057 6.618287 TGGCAATTATCTACAAGGAAATCG 57.382 37.500 0.00 0.00 0.00 3.34
3579 4083 4.634004 TGCTATGGGAAAACATGAACTACG 59.366 41.667 0.00 0.00 32.39 3.51
3641 4146 5.616488 ACACGTGTTTTCCATATTACACC 57.384 39.130 17.22 0.00 38.06 4.16
3642 4147 9.109533 CTTTTACACGTGTTTTCCATATTACAC 57.890 33.333 28.55 0.00 37.97 2.90
3643 4148 8.838365 ACTTTTACACGTGTTTTCCATATTACA 58.162 29.630 28.55 0.00 0.00 2.41
3644 4149 9.667989 AACTTTTACACGTGTTTTCCATATTAC 57.332 29.630 28.55 0.00 0.00 1.89
3646 4151 9.667989 GTAACTTTTACACGTGTTTTCCATATT 57.332 29.630 28.55 13.17 0.00 1.28
3648 4153 7.343691 CGTAACTTTTACACGTGTTTTCCATA 58.656 34.615 28.55 11.18 0.00 2.74
3649 4154 6.193761 CGTAACTTTTACACGTGTTTTCCAT 58.806 36.000 28.55 12.18 0.00 3.41
3650 4155 5.447010 CCGTAACTTTTACACGTGTTTTCCA 60.447 40.000 28.55 5.03 33.93 3.53
3651 4156 4.963352 CCGTAACTTTTACACGTGTTTTCC 59.037 41.667 28.55 7.75 33.93 3.13
3652 4157 4.434266 GCCGTAACTTTTACACGTGTTTTC 59.566 41.667 28.55 11.21 33.93 2.29
3653 4158 4.341935 GCCGTAACTTTTACACGTGTTTT 58.658 39.130 28.55 14.16 33.93 2.43
3654 4159 3.242706 GGCCGTAACTTTTACACGTGTTT 60.243 43.478 28.55 16.77 33.93 2.83
3655 4160 2.287644 GGCCGTAACTTTTACACGTGTT 59.712 45.455 28.55 10.23 33.93 3.32
3656 4161 1.866601 GGCCGTAACTTTTACACGTGT 59.133 47.619 26.52 26.52 33.93 4.49
3657 4162 1.195222 GGGCCGTAACTTTTACACGTG 59.805 52.381 15.48 15.48 33.93 4.49
3658 4163 1.202627 TGGGCCGTAACTTTTACACGT 60.203 47.619 0.00 0.00 33.93 4.49
3659 4164 1.510776 TGGGCCGTAACTTTTACACG 58.489 50.000 0.00 0.00 35.50 4.49
3660 4165 3.986442 TTTGGGCCGTAACTTTTACAC 57.014 42.857 0.00 0.00 0.00 2.90
3661 4166 4.583489 TCATTTTGGGCCGTAACTTTTACA 59.417 37.500 0.00 0.00 0.00 2.41
3662 4167 4.919168 GTCATTTTGGGCCGTAACTTTTAC 59.081 41.667 0.00 0.00 0.00 2.01
3663 4168 4.320348 CGTCATTTTGGGCCGTAACTTTTA 60.320 41.667 0.00 0.00 0.00 1.52
3664 4169 3.551250 CGTCATTTTGGGCCGTAACTTTT 60.551 43.478 0.00 0.00 0.00 2.27
3665 4170 2.030628 CGTCATTTTGGGCCGTAACTTT 60.031 45.455 0.00 0.00 0.00 2.66
3666 4171 1.538075 CGTCATTTTGGGCCGTAACTT 59.462 47.619 0.00 0.00 0.00 2.66
3667 4172 1.161843 CGTCATTTTGGGCCGTAACT 58.838 50.000 0.00 0.00 0.00 2.24
3668 4173 1.158434 TCGTCATTTTGGGCCGTAAC 58.842 50.000 0.00 0.00 0.00 2.50
3669 4174 1.536331 GTTCGTCATTTTGGGCCGTAA 59.464 47.619 0.00 0.00 0.00 3.18
3670 4175 1.158434 GTTCGTCATTTTGGGCCGTA 58.842 50.000 0.00 0.00 0.00 4.02
3671 4176 1.520600 GGTTCGTCATTTTGGGCCGT 61.521 55.000 0.00 0.00 0.00 5.68
3672 4177 1.211709 GGTTCGTCATTTTGGGCCG 59.788 57.895 0.00 0.00 0.00 6.13
3673 4178 0.676736 TTGGTTCGTCATTTTGGGCC 59.323 50.000 0.00 0.00 0.00 5.80
3674 4179 2.606108 GATTGGTTCGTCATTTTGGGC 58.394 47.619 0.00 0.00 0.00 5.36
3675 4180 2.415357 CCGATTGGTTCGTCATTTTGGG 60.415 50.000 0.00 0.00 46.65 4.12
3676 4181 2.862512 CCGATTGGTTCGTCATTTTGG 58.137 47.619 0.00 0.00 46.65 3.28
3677 4182 2.095263 AGCCGATTGGTTCGTCATTTTG 60.095 45.455 0.00 0.00 46.65 2.44
3678 4183 2.159382 AGCCGATTGGTTCGTCATTTT 58.841 42.857 0.00 0.00 46.65 1.82
3679 4184 1.821216 AGCCGATTGGTTCGTCATTT 58.179 45.000 0.00 0.00 46.65 2.32
3680 4185 2.676342 GTTAGCCGATTGGTTCGTCATT 59.324 45.455 0.00 0.00 46.65 2.57
3681 4186 2.093658 AGTTAGCCGATTGGTTCGTCAT 60.094 45.455 0.00 0.00 46.65 3.06
3682 4187 1.274167 AGTTAGCCGATTGGTTCGTCA 59.726 47.619 0.00 0.00 46.65 4.35
3683 4188 1.659098 CAGTTAGCCGATTGGTTCGTC 59.341 52.381 0.00 0.00 46.65 4.20
3684 4189 1.274167 TCAGTTAGCCGATTGGTTCGT 59.726 47.619 0.00 0.00 46.65 3.85
3686 4191 3.127030 CCTTTCAGTTAGCCGATTGGTTC 59.873 47.826 0.00 0.00 37.67 3.62
3687 4192 3.081804 CCTTTCAGTTAGCCGATTGGTT 58.918 45.455 0.00 0.00 37.67 3.67
3688 4193 2.618045 CCCTTTCAGTTAGCCGATTGGT 60.618 50.000 0.00 0.00 37.67 3.67
3689 4194 2.017049 CCCTTTCAGTTAGCCGATTGG 58.983 52.381 0.00 0.00 38.77 3.16
3690 4195 2.017049 CCCCTTTCAGTTAGCCGATTG 58.983 52.381 0.00 0.00 0.00 2.67
3691 4196 1.682087 GCCCCTTTCAGTTAGCCGATT 60.682 52.381 0.00 0.00 0.00 3.34
3692 4197 0.107165 GCCCCTTTCAGTTAGCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
3693 4198 1.298667 GCCCCTTTCAGTTAGCCGA 59.701 57.895 0.00 0.00 0.00 5.54
3694 4199 1.749258 GGCCCCTTTCAGTTAGCCG 60.749 63.158 0.00 0.00 0.00 5.52
3695 4200 1.379977 GGGCCCCTTTCAGTTAGCC 60.380 63.158 12.23 0.00 39.73 3.93
3696 4201 1.749258 CGGGCCCCTTTCAGTTAGC 60.749 63.158 18.66 0.00 0.00 3.09
3697 4202 1.077716 CCGGGCCCCTTTCAGTTAG 60.078 63.158 18.66 0.00 0.00 2.34
3698 4203 1.428718 AACCGGGCCCCTTTCAGTTA 61.429 55.000 18.66 0.00 0.00 2.24
3699 4204 2.306715 AAACCGGGCCCCTTTCAGTT 62.307 55.000 18.66 7.66 0.00 3.16
3700 4205 2.306715 AAAACCGGGCCCCTTTCAGT 62.307 55.000 18.66 0.81 0.00 3.41
3701 4206 1.118965 AAAAACCGGGCCCCTTTCAG 61.119 55.000 18.66 0.00 0.00 3.02
3702 4207 1.075151 AAAAACCGGGCCCCTTTCA 60.075 52.632 18.66 0.00 0.00 2.69
3703 4208 1.369692 CAAAAACCGGGCCCCTTTC 59.630 57.895 18.66 0.00 0.00 2.62
3704 4209 2.144078 CCAAAAACCGGGCCCCTTT 61.144 57.895 18.66 11.47 0.00 3.11
3705 4210 2.525629 CCAAAAACCGGGCCCCTT 60.526 61.111 18.66 4.57 0.00 3.95
3706 4211 2.021318 TAACCAAAAACCGGGCCCCT 62.021 55.000 18.66 0.00 0.00 4.79
3707 4212 1.533513 TAACCAAAAACCGGGCCCC 60.534 57.895 18.66 0.00 0.00 5.80
3708 4213 1.667151 GTAACCAAAAACCGGGCCC 59.333 57.895 13.57 13.57 0.00 5.80
3709 4214 1.286570 CGTAACCAAAAACCGGGCC 59.713 57.895 6.32 0.00 0.00 5.80
3710 4215 1.286570 CCGTAACCAAAAACCGGGC 59.713 57.895 6.32 0.00 35.11 6.13
3712 4217 1.525718 CCCCCGTAACCAAAAACCGG 61.526 60.000 0.00 0.00 38.39 5.28
3713 4218 0.536915 TCCCCCGTAACCAAAAACCG 60.537 55.000 0.00 0.00 0.00 4.44
3714 4219 1.250328 CTCCCCCGTAACCAAAAACC 58.750 55.000 0.00 0.00 0.00 3.27
3715 4220 1.985473 ACTCCCCCGTAACCAAAAAC 58.015 50.000 0.00 0.00 0.00 2.43
3716 4221 4.080687 CAATACTCCCCCGTAACCAAAAA 58.919 43.478 0.00 0.00 0.00 1.94
3717 4222 3.074242 ACAATACTCCCCCGTAACCAAAA 59.926 43.478 0.00 0.00 0.00 2.44
3718 4223 2.643801 ACAATACTCCCCCGTAACCAAA 59.356 45.455 0.00 0.00 0.00 3.28
3719 4224 2.268107 ACAATACTCCCCCGTAACCAA 58.732 47.619 0.00 0.00 0.00 3.67
3720 4225 1.955451 ACAATACTCCCCCGTAACCA 58.045 50.000 0.00 0.00 0.00 3.67
3721 4226 2.765699 TGTACAATACTCCCCCGTAACC 59.234 50.000 0.00 0.00 0.00 2.85
3722 4227 3.181472 CCTGTACAATACTCCCCCGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
3723 4228 3.033184 CCTGTACAATACTCCCCCGTAA 58.967 50.000 0.00 0.00 0.00 3.18
3724 4229 2.024080 ACCTGTACAATACTCCCCCGTA 60.024 50.000 0.00 0.00 0.00 4.02
3725 4230 1.273438 ACCTGTACAATACTCCCCCGT 60.273 52.381 0.00 0.00 0.00 5.28
3726 4231 1.138266 CACCTGTACAATACTCCCCCG 59.862 57.143 0.00 0.00 0.00 5.73
3727 4232 2.193993 ACACCTGTACAATACTCCCCC 58.806 52.381 0.00 0.00 0.00 5.40
3728 4233 5.599656 TGTATACACCTGTACAATACTCCCC 59.400 44.000 0.08 0.00 32.72 4.81
3729 4234 6.720112 TGTATACACCTGTACAATACTCCC 57.280 41.667 0.08 0.00 32.72 4.30
3730 4235 6.040616 AGCTGTATACACCTGTACAATACTCC 59.959 42.308 0.08 6.60 32.72 3.85
3731 4236 6.918569 CAGCTGTATACACCTGTACAATACTC 59.081 42.308 16.88 7.37 32.72 2.59
3732 4237 6.380274 ACAGCTGTATACACCTGTACAATACT 59.620 38.462 25.60 5.29 40.05 2.12
3733 4238 6.570692 ACAGCTGTATACACCTGTACAATAC 58.429 40.000 25.60 2.45 40.05 1.89
3734 4239 6.785337 ACAGCTGTATACACCTGTACAATA 57.215 37.500 25.60 0.00 40.05 1.90
3735 4240 5.677319 ACAGCTGTATACACCTGTACAAT 57.323 39.130 25.60 7.11 40.05 2.71
3736 4241 6.593268 TTACAGCTGTATACACCTGTACAA 57.407 37.500 28.75 19.74 41.86 2.41
3737 4242 6.593268 TTTACAGCTGTATACACCTGTACA 57.407 37.500 28.75 23.15 41.86 2.90
3738 4243 6.034256 CGTTTTACAGCTGTATACACCTGTAC 59.966 42.308 28.75 22.26 41.86 2.90
3739 4244 6.072008 TCGTTTTACAGCTGTATACACCTGTA 60.072 38.462 26.59 26.59 40.05 2.74
3740 4245 4.927425 CGTTTTACAGCTGTATACACCTGT 59.073 41.667 28.22 28.22 43.15 4.00
3741 4246 5.061808 GTCGTTTTACAGCTGTATACACCTG 59.938 44.000 26.54 21.56 36.05 4.00
3742 4247 5.166398 GTCGTTTTACAGCTGTATACACCT 58.834 41.667 26.54 0.00 0.00 4.00
3743 4248 4.030977 CGTCGTTTTACAGCTGTATACACC 59.969 45.833 26.54 17.06 0.00 4.16
3744 4249 4.618489 ACGTCGTTTTACAGCTGTATACAC 59.382 41.667 26.54 20.09 0.00 2.90
3745 4250 4.797471 ACGTCGTTTTACAGCTGTATACA 58.203 39.130 26.54 10.02 0.00 2.29
3746 4251 5.220098 GGAACGTCGTTTTACAGCTGTATAC 60.220 44.000 26.54 23.33 0.00 1.47
3747 4252 4.858692 GGAACGTCGTTTTACAGCTGTATA 59.141 41.667 26.54 19.27 0.00 1.47
3748 4253 3.676646 GGAACGTCGTTTTACAGCTGTAT 59.323 43.478 26.54 8.92 0.00 2.29
3749 4254 3.052036 GGAACGTCGTTTTACAGCTGTA 58.948 45.455 22.67 22.67 0.00 2.74
3750 4255 1.862827 GGAACGTCGTTTTACAGCTGT 59.137 47.619 25.12 25.12 0.00 4.40
3751 4256 1.862201 TGGAACGTCGTTTTACAGCTG 59.138 47.619 13.48 13.48 0.00 4.24
3752 4257 2.228138 TGGAACGTCGTTTTACAGCT 57.772 45.000 12.67 0.00 0.00 4.24
3753 4258 2.899977 CTTGGAACGTCGTTTTACAGC 58.100 47.619 12.67 0.00 0.00 4.40
3754 4259 2.658224 CGCTTGGAACGTCGTTTTACAG 60.658 50.000 12.67 7.49 0.00 2.74
3755 4260 1.258458 CGCTTGGAACGTCGTTTTACA 59.742 47.619 12.67 9.25 0.00 2.41
3756 4261 1.397567 CCGCTTGGAACGTCGTTTTAC 60.398 52.381 12.67 6.75 33.02 2.01
3757 4262 0.860533 CCGCTTGGAACGTCGTTTTA 59.139 50.000 12.67 1.60 33.02 1.52
3758 4263 1.644913 CCGCTTGGAACGTCGTTTT 59.355 52.632 12.67 0.00 33.02 2.43
3759 4264 2.248835 CCCGCTTGGAACGTCGTTT 61.249 57.895 12.67 0.00 35.39 3.60
3760 4265 2.663852 CCCGCTTGGAACGTCGTT 60.664 61.111 11.08 11.08 35.39 3.85
3761 4266 4.675029 CCCCGCTTGGAACGTCGT 62.675 66.667 0.00 0.00 35.39 4.34
3765 4270 3.615509 TTAGGCCCCGCTTGGAACG 62.616 63.158 0.00 0.00 35.39 3.95
3766 4271 0.683179 ATTTAGGCCCCGCTTGGAAC 60.683 55.000 0.00 0.00 35.39 3.62
3767 4272 0.920438 TATTTAGGCCCCGCTTGGAA 59.080 50.000 0.00 0.00 35.39 3.53
3768 4273 1.145571 ATATTTAGGCCCCGCTTGGA 58.854 50.000 0.00 0.00 35.39 3.53
3769 4274 1.247567 CATATTTAGGCCCCGCTTGG 58.752 55.000 0.00 0.00 0.00 3.61
3770 4275 1.981256 ACATATTTAGGCCCCGCTTG 58.019 50.000 0.00 0.00 0.00 4.01
3771 4276 2.440253 TGTACATATTTAGGCCCCGCTT 59.560 45.455 0.00 0.00 0.00 4.68
3772 4277 2.051692 TGTACATATTTAGGCCCCGCT 58.948 47.619 0.00 0.00 0.00 5.52
3773 4278 2.554370 TGTACATATTTAGGCCCCGC 57.446 50.000 0.00 0.00 0.00 6.13
3774 4279 4.020573 TCAGATGTACATATTTAGGCCCCG 60.021 45.833 8.71 0.00 0.00 5.73
3775 4280 5.499004 TCAGATGTACATATTTAGGCCCC 57.501 43.478 8.71 0.00 0.00 5.80
3776 4281 8.079211 TCTATCAGATGTACATATTTAGGCCC 57.921 38.462 8.71 0.00 0.00 5.80
3777 4282 8.754080 ACTCTATCAGATGTACATATTTAGGCC 58.246 37.037 8.71 0.00 0.00 5.19
3812 4318 5.014123 ACCTGAATAACCTCATGAAACCTCA 59.986 40.000 0.00 0.00 35.56 3.86
3813 4319 5.501156 ACCTGAATAACCTCATGAAACCTC 58.499 41.667 0.00 0.00 0.00 3.85
3940 4448 5.046304 ACTCTGTAGAACAATGCATACCTGT 60.046 40.000 0.00 0.00 0.00 4.00
4120 4632 4.881019 AGTATGAACACTGAAGACAGCT 57.119 40.909 0.00 0.00 46.95 4.24
4201 4722 6.822667 ATCAGCACAACAATGACTGATAAA 57.177 33.333 13.46 0.00 44.50 1.40
4332 4853 6.870439 CAGATAGCAAATGATCGTCCTCATTA 59.130 38.462 9.77 0.00 43.37 1.90
4382 4906 8.996651 ACCATGAATCCCTAAGTATTTAAAGG 57.003 34.615 0.00 0.00 0.00 3.11
4409 4935 9.882996 ACAATATATCGTGCAATTCAACTATTG 57.117 29.630 0.00 0.00 38.31 1.90
4420 4947 6.106003 ACTCAAGTGACAATATATCGTGCAA 58.894 36.000 0.00 0.00 0.00 4.08
4431 4963 3.005897 ACTGCTCGTACTCAAGTGACAAT 59.994 43.478 0.00 0.00 0.00 2.71
4450 4982 7.981789 TCTTGTAAGCAGACCTGATAAATACTG 59.018 37.037 0.47 0.00 0.00 2.74
4569 5105 3.181450 CCACCTTGGAAACAGAAGTCTCT 60.181 47.826 0.00 0.00 40.96 3.10
4665 5201 9.621629 TTCAACAGAATCTTTTACTAACTCCAA 57.378 29.630 0.00 0.00 0.00 3.53
4689 5555 8.659491 GGAGTTTCTTTGCCAATTGAATAATTC 58.341 33.333 7.12 0.00 34.34 2.17
4752 5618 3.500471 GGGGTGAAAACAGGGAAGAATCT 60.500 47.826 0.00 0.00 0.00 2.40
4822 5896 6.344702 GCAAACAGCGTAATGTTAAACTTGTC 60.345 38.462 3.75 0.00 42.49 3.18
4848 5922 4.977963 CCCAAGTGCTGCGATAATTAAATG 59.022 41.667 0.00 0.00 0.00 2.32
5034 6108 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
5035 6109 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
5039 6113 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5040 6114 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5041 6115 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
5045 6119 7.781693 AGAATGTACTCCCTCCGTAAACTAATA 59.218 37.037 0.00 0.00 0.00 0.98
5046 6120 6.610425 AGAATGTACTCCCTCCGTAAACTAAT 59.390 38.462 0.00 0.00 0.00 1.73
5048 6122 5.513233 AGAATGTACTCCCTCCGTAAACTA 58.487 41.667 0.00 0.00 0.00 2.24
5050 6124 4.732672 AGAATGTACTCCCTCCGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
5051 6125 7.418254 GGAAATAGAATGTACTCCCTCCGTAAA 60.418 40.741 0.00 0.00 0.00 2.01
5056 6137 5.888982 TGGAAATAGAATGTACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
5197 6522 6.644592 CCACGCCTTTTGATGATAAAGAAAAA 59.355 34.615 0.00 0.00 35.16 1.94
5272 6601 3.124578 ACAATGCACCCATGGAAAAAC 57.875 42.857 15.22 0.00 0.00 2.43
5283 6612 4.619973 TCTCATTTCAACAACAATGCACC 58.380 39.130 0.00 0.00 31.47 5.01
5329 6658 9.748708 CAGAACAAATGTAAGAATTTGAAAGGA 57.251 29.630 14.70 0.00 46.13 3.36
5355 6684 5.235616 TCGACAAAGTAATCCAACTGTCAAC 59.764 40.000 0.00 0.00 0.00 3.18
5368 6697 4.890088 AGTAGTGGCAATCGACAAAGTAA 58.110 39.130 0.00 0.00 0.00 2.24
5380 6709 0.610174 CAGGCAGAGAGTAGTGGCAA 59.390 55.000 0.00 0.00 41.59 4.52
5440 6769 3.975168 TTCACAGGGAAGTAACCTAGC 57.025 47.619 0.00 0.00 36.32 3.42
5473 6802 0.748005 CCGCCAAACCGATCATTCCT 60.748 55.000 0.00 0.00 0.00 3.36
5477 6806 1.153168 CCTCCGCCAAACCGATCAT 60.153 57.895 0.00 0.00 0.00 2.45
5478 6807 2.267642 CCTCCGCCAAACCGATCA 59.732 61.111 0.00 0.00 0.00 2.92
5647 7154 0.879765 TCCAGGACTTCTTCGTCGTC 59.120 55.000 0.00 0.00 34.75 4.20
5648 7155 1.473278 GATCCAGGACTTCTTCGTCGT 59.527 52.381 0.00 0.00 34.75 4.34
5730 7237 5.191323 AGAGACCAGACATCAATCTTGGAAT 59.809 40.000 0.00 0.00 0.00 3.01
5756 7263 8.150945 ACTAAATCTCATATGGATGCGTTAACT 58.849 33.333 2.13 0.00 32.62 2.24
5780 7287 2.494073 TCGCCTTGGACAAACAAAAACT 59.506 40.909 0.00 0.00 0.00 2.66
5793 7300 3.269347 CCGCCGTTATCGCCTTGG 61.269 66.667 0.00 0.00 35.54 3.61
5794 7301 3.269347 CCCGCCGTTATCGCCTTG 61.269 66.667 0.00 0.00 35.54 3.61
5795 7302 3.728279 GACCCGCCGTTATCGCCTT 62.728 63.158 0.00 0.00 35.54 4.35
5817 7325 5.353394 ACAGGATCGTAGGCAAGAAAATA 57.647 39.130 0.00 0.00 0.00 1.40
5900 7441 0.041238 AGGGAGGAGGAATCACGACA 59.959 55.000 0.00 0.00 0.00 4.35
5911 7463 5.443230 AAGGAGAAAATTGTAGGGAGGAG 57.557 43.478 0.00 0.00 0.00 3.69
5912 7464 5.860648 AAAGGAGAAAATTGTAGGGAGGA 57.139 39.130 0.00 0.00 0.00 3.71
5913 7465 9.868160 AATATAAAGGAGAAAATTGTAGGGAGG 57.132 33.333 0.00 0.00 0.00 4.30
6031 7591 4.386867 TCTAGGCAAGTCATAAGGTTCG 57.613 45.455 0.00 0.00 0.00 3.95
6096 7658 7.700656 ACACAGTTTTAGTATGTTTGCAAGTTC 59.299 33.333 0.00 0.00 0.00 3.01
6126 7693 7.865706 AGCCTAAAAAGTATTCGTTCATCAT 57.134 32.000 0.00 0.00 0.00 2.45
6127 7694 8.780846 TTAGCCTAAAAAGTATTCGTTCATCA 57.219 30.769 0.00 0.00 0.00 3.07
6128 7695 9.704098 CTTTAGCCTAAAAAGTATTCGTTCATC 57.296 33.333 0.00 0.00 0.00 2.92
6129 7696 8.674607 CCTTTAGCCTAAAAAGTATTCGTTCAT 58.325 33.333 0.00 0.00 33.05 2.57
6130 7697 7.361457 GCCTTTAGCCTAAAAAGTATTCGTTCA 60.361 37.037 0.00 0.00 33.05 3.18
6131 7698 6.965500 GCCTTTAGCCTAAAAAGTATTCGTTC 59.035 38.462 0.00 0.00 33.05 3.95
6132 7699 6.402875 CGCCTTTAGCCTAAAAAGTATTCGTT 60.403 38.462 0.00 0.00 38.78 3.85
6150 7721 5.031066 AGAATTGCATACCTACGCCTTTA 57.969 39.130 0.00 0.00 0.00 1.85
6171 7742 8.424918 AGCTATAAATATCATGATACGGGGAAG 58.575 37.037 17.60 11.61 0.00 3.46
6286 7857 3.637229 TGATCTTGGCAGGTAGTACTAGC 59.363 47.826 21.85 21.85 0.00 3.42
6290 7861 4.572389 CACATTGATCTTGGCAGGTAGTAC 59.428 45.833 0.00 0.00 0.00 2.73
6360 7931 7.029563 GCCACATCGATTTGAGTTAATTTCTT 58.970 34.615 13.10 0.00 0.00 2.52
6376 7947 2.254546 AAAACAGTGAGCCACATCGA 57.745 45.000 0.00 0.00 36.74 3.59
6440 8012 1.686110 AGCCCTACGAGTCTTGGGG 60.686 63.158 13.26 13.26 39.99 4.96
6443 8015 2.366533 TCTACAGCCCTACGAGTCTTG 58.633 52.381 0.00 0.00 0.00 3.02
6458 8030 1.471119 AAAGGCGGTCTCGATCTACA 58.529 50.000 0.00 0.00 39.00 2.74
6465 8037 1.837538 TTTGCGAAAAGGCGGTCTCG 61.838 55.000 0.00 0.00 39.81 4.04
6472 8044 0.955905 TGGGTAGTTTGCGAAAAGGC 59.044 50.000 0.00 0.00 0.00 4.35
6542 8119 9.265901 CAACAAGTAGTAATATGGATTGGAGAG 57.734 37.037 0.00 0.00 0.00 3.20
6561 8138 3.684788 CGCTCCATAAAGCTACAACAAGT 59.315 43.478 0.00 0.00 40.23 3.16
6562 8139 3.684788 ACGCTCCATAAAGCTACAACAAG 59.315 43.478 0.00 0.00 40.23 3.16
6564 8141 3.328382 ACGCTCCATAAAGCTACAACA 57.672 42.857 0.00 0.00 40.23 3.33
6566 8143 3.181469 CCCTACGCTCCATAAAGCTACAA 60.181 47.826 0.00 0.00 40.23 2.41
6567 8144 2.364324 CCCTACGCTCCATAAAGCTACA 59.636 50.000 0.00 0.00 40.23 2.74
6569 8146 2.891580 CTCCCTACGCTCCATAAAGCTA 59.108 50.000 0.00 0.00 40.23 3.32
6570 8147 1.689273 CTCCCTACGCTCCATAAAGCT 59.311 52.381 0.00 0.00 40.23 3.74
6571 8148 1.413077 ACTCCCTACGCTCCATAAAGC 59.587 52.381 0.00 0.00 38.97 3.51
6572 8149 4.931661 TTACTCCCTACGCTCCATAAAG 57.068 45.455 0.00 0.00 0.00 1.85
6573 8150 5.881923 AATTACTCCCTACGCTCCATAAA 57.118 39.130 0.00 0.00 0.00 1.40
6574 8151 5.881923 AAATTACTCCCTACGCTCCATAA 57.118 39.130 0.00 0.00 0.00 1.90
6576 8153 4.772886 AAAATTACTCCCTACGCTCCAT 57.227 40.909 0.00 0.00 0.00 3.41
6577 8154 5.881923 ATAAAATTACTCCCTACGCTCCA 57.118 39.130 0.00 0.00 0.00 3.86
6578 8155 6.017357 CCAAATAAAATTACTCCCTACGCTCC 60.017 42.308 0.00 0.00 0.00 4.70
6580 8157 6.420638 ACCAAATAAAATTACTCCCTACGCT 58.579 36.000 0.00 0.00 0.00 5.07
6581 8158 6.541278 AGACCAAATAAAATTACTCCCTACGC 59.459 38.462 0.00 0.00 0.00 4.42
6582 8159 7.551617 ACAGACCAAATAAAATTACTCCCTACG 59.448 37.037 0.00 0.00 0.00 3.51
6583 8160 8.803397 ACAGACCAAATAAAATTACTCCCTAC 57.197 34.615 0.00 0.00 0.00 3.18
6584 8161 8.832735 AGACAGACCAAATAAAATTACTCCCTA 58.167 33.333 0.00 0.00 0.00 3.53
6585 8162 7.699878 AGACAGACCAAATAAAATTACTCCCT 58.300 34.615 0.00 0.00 0.00 4.20
6586 8163 7.939784 AGACAGACCAAATAAAATTACTCCC 57.060 36.000 0.00 0.00 0.00 4.30
6630 8208 3.667497 TTCTCGGGCATGATGATAGAC 57.333 47.619 0.00 0.00 0.00 2.59
6633 8211 2.550855 GGCTTTCTCGGGCATGATGATA 60.551 50.000 0.00 0.00 0.00 2.15
6640 8218 0.603065 GTTTTGGCTTTCTCGGGCAT 59.397 50.000 0.00 0.00 38.95 4.40
6641 8219 1.460273 GGTTTTGGCTTTCTCGGGCA 61.460 55.000 0.00 0.00 37.47 5.36
6642 8220 1.289066 GGTTTTGGCTTTCTCGGGC 59.711 57.895 0.00 0.00 0.00 6.13
6652 8231 1.111277 AGGTGAGTGTTGGTTTTGGC 58.889 50.000 0.00 0.00 0.00 4.52
6658 8237 4.161754 GCTATTAGGTAGGTGAGTGTTGGT 59.838 45.833 0.00 0.00 0.00 3.67
6663 8242 4.443034 GGTTGGCTATTAGGTAGGTGAGTG 60.443 50.000 0.00 0.00 0.00 3.51
6664 8243 3.710165 GGTTGGCTATTAGGTAGGTGAGT 59.290 47.826 0.00 0.00 0.00 3.41
6676 8255 2.551270 TCTCTCACCAGGTTGGCTATT 58.449 47.619 0.00 0.00 42.67 1.73
6677 8256 2.254152 TCTCTCACCAGGTTGGCTAT 57.746 50.000 0.00 0.00 42.67 2.97
6678 8257 1.902508 CTTCTCTCACCAGGTTGGCTA 59.097 52.381 0.00 0.00 42.67 3.93
6679 8258 0.689623 CTTCTCTCACCAGGTTGGCT 59.310 55.000 0.00 0.00 42.67 4.75
6680 8259 0.957888 GCTTCTCTCACCAGGTTGGC 60.958 60.000 0.00 0.00 42.67 4.52
6681 8260 0.671781 CGCTTCTCTCACCAGGTTGG 60.672 60.000 0.00 0.00 45.02 3.77
6682 8261 0.034059 ACGCTTCTCTCACCAGGTTG 59.966 55.000 0.00 0.00 0.00 3.77
6683 8262 0.034059 CACGCTTCTCTCACCAGGTT 59.966 55.000 0.00 0.00 0.00 3.50
6684 8263 1.668294 CACGCTTCTCTCACCAGGT 59.332 57.895 0.00 0.00 0.00 4.00
6685 8264 1.739562 GCACGCTTCTCTCACCAGG 60.740 63.158 0.00 0.00 0.00 4.45
6686 8265 0.528017 TAGCACGCTTCTCTCACCAG 59.472 55.000 0.00 0.00 0.00 4.00
6687 8266 0.966179 TTAGCACGCTTCTCTCACCA 59.034 50.000 0.00 0.00 0.00 4.17
6688 8267 1.929836 CATTAGCACGCTTCTCTCACC 59.070 52.381 0.00 0.00 0.00 4.02
6689 8268 2.611518 ACATTAGCACGCTTCTCTCAC 58.388 47.619 0.00 0.00 0.00 3.51
6690 8269 3.254060 GAACATTAGCACGCTTCTCTCA 58.746 45.455 0.00 0.00 0.00 3.27
6691 8270 3.254060 TGAACATTAGCACGCTTCTCTC 58.746 45.455 0.00 0.00 0.00 3.20
6692 8271 3.056536 TCTGAACATTAGCACGCTTCTCT 60.057 43.478 0.00 0.00 0.00 3.10
6693 8272 3.254060 TCTGAACATTAGCACGCTTCTC 58.746 45.455 0.00 0.00 0.00 2.87
6694 8273 3.257393 CTCTGAACATTAGCACGCTTCT 58.743 45.455 0.00 0.00 0.00 2.85
6695 8274 2.349886 CCTCTGAACATTAGCACGCTTC 59.650 50.000 0.00 0.00 0.00 3.86
6696 8275 2.289694 ACCTCTGAACATTAGCACGCTT 60.290 45.455 0.00 0.00 0.00 4.68
6697 8276 1.276421 ACCTCTGAACATTAGCACGCT 59.724 47.619 0.00 0.00 0.00 5.07
6698 8277 1.726853 ACCTCTGAACATTAGCACGC 58.273 50.000 0.00 0.00 0.00 5.34
6699 8278 3.325870 TCAACCTCTGAACATTAGCACG 58.674 45.455 0.00 0.00 0.00 5.34
6700 8279 5.886960 AATCAACCTCTGAACATTAGCAC 57.113 39.130 0.00 0.00 37.67 4.40
6701 8280 6.489700 TCAAAATCAACCTCTGAACATTAGCA 59.510 34.615 0.00 0.00 37.67 3.49
6702 8281 6.913170 TCAAAATCAACCTCTGAACATTAGC 58.087 36.000 0.00 0.00 37.67 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.