Multiple sequence alignment - TraesCS7D01G001400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G001400 | chr7D | 100.000 | 3505 | 0 | 0 | 1 | 3505 | 1259902 | 1256398 | 0.000000e+00 | 6473.0 |
1 | TraesCS7D01G001400 | chr7D | 84.593 | 2025 | 268 | 22 | 1489 | 3500 | 1017984 | 1015991 | 0.000000e+00 | 1971.0 |
2 | TraesCS7D01G001400 | chr7D | 84.340 | 2037 | 279 | 27 | 1493 | 3505 | 1198096 | 1196076 | 0.000000e+00 | 1958.0 |
3 | TraesCS7D01G001400 | chr7D | 86.538 | 312 | 38 | 2 | 999 | 1310 | 1018406 | 1018099 | 1.200000e-89 | 340.0 |
4 | TraesCS7D01G001400 | chr7D | 85.350 | 314 | 41 | 5 | 1003 | 1316 | 550072499 | 550072807 | 1.570000e-83 | 320.0 |
5 | TraesCS7D01G001400 | chr7A | 84.570 | 2521 | 328 | 34 | 1001 | 3505 | 1417032 | 1419507 | 0.000000e+00 | 2444.0 |
6 | TraesCS7D01G001400 | chr7A | 84.289 | 2024 | 287 | 21 | 1497 | 3505 | 763551 | 761544 | 0.000000e+00 | 1947.0 |
7 | TraesCS7D01G001400 | chr7A | 88.580 | 324 | 32 | 3 | 1001 | 1324 | 680422 | 680104 | 4.240000e-104 | 388.0 |
8 | TraesCS7D01G001400 | chr7A | 88.814 | 295 | 22 | 6 | 592 | 885 | 1416577 | 1416861 | 5.570000e-93 | 351.0 |
9 | TraesCS7D01G001400 | chr7A | 85.375 | 253 | 24 | 8 | 208 | 448 | 1415835 | 1416086 | 2.090000e-62 | 250.0 |
10 | TraesCS7D01G001400 | chr7A | 84.426 | 122 | 11 | 6 | 1 | 121 | 1410003 | 1410117 | 2.860000e-21 | 113.0 |
11 | TraesCS7D01G001400 | chr4A | 84.990 | 2012 | 276 | 12 | 1509 | 3505 | 743758615 | 743756615 | 0.000000e+00 | 2019.0 |
12 | TraesCS7D01G001400 | chr4A | 84.352 | 2045 | 282 | 24 | 1493 | 3505 | 743128164 | 743126126 | 0.000000e+00 | 1969.0 |
13 | TraesCS7D01G001400 | chr4A | 83.621 | 2027 | 284 | 26 | 1493 | 3505 | 744039646 | 744041638 | 0.000000e+00 | 1860.0 |
14 | TraesCS7D01G001400 | chr4A | 82.575 | 2043 | 301 | 24 | 1493 | 3505 | 743648484 | 743646467 | 0.000000e+00 | 1749.0 |
15 | TraesCS7D01G001400 | chr4A | 81.209 | 1059 | 150 | 25 | 2458 | 3505 | 743771264 | 743770244 | 0.000000e+00 | 808.0 |
16 | TraesCS7D01G001400 | chr4A | 86.293 | 321 | 41 | 1 | 999 | 1319 | 743159116 | 743158799 | 2.590000e-91 | 346.0 |
17 | TraesCS7D01G001400 | chr3B | 83.978 | 2041 | 285 | 19 | 1493 | 3505 | 747710653 | 747712679 | 0.000000e+00 | 1919.0 |
18 | TraesCS7D01G001400 | chr3B | 89.420 | 293 | 28 | 1 | 998 | 1290 | 747709963 | 747710252 | 1.990000e-97 | 366.0 |
19 | TraesCS7D01G001400 | chrUn | 83.944 | 2018 | 301 | 19 | 1498 | 3505 | 89024233 | 89022229 | 0.000000e+00 | 1910.0 |
20 | TraesCS7D01G001400 | chrUn | 88.715 | 576 | 45 | 12 | 1 | 563 | 89026693 | 89026125 | 0.000000e+00 | 686.0 |
21 | TraesCS7D01G001400 | chrUn | 85.515 | 573 | 77 | 4 | 2926 | 3495 | 51459511 | 51460080 | 8.380000e-166 | 593.0 |
22 | TraesCS7D01G001400 | chrUn | 89.753 | 283 | 17 | 9 | 592 | 869 | 89025867 | 89025592 | 5.570000e-93 | 351.0 |
23 | TraesCS7D01G001400 | chrUn | 87.097 | 186 | 13 | 5 | 592 | 777 | 89033064 | 89032890 | 2.130000e-47 | 200.0 |
24 | TraesCS7D01G001400 | chr7B | 83.972 | 2034 | 262 | 36 | 1493 | 3499 | 59641145 | 59639149 | 0.000000e+00 | 1892.0 |
25 | TraesCS7D01G001400 | chr7B | 85.143 | 350 | 46 | 4 | 981 | 1329 | 111325717 | 111325373 | 1.550000e-93 | 353.0 |
26 | TraesCS7D01G001400 | chr7B | 89.209 | 278 | 30 | 0 | 1045 | 1322 | 59641482 | 59641205 | 7.200000e-92 | 348.0 |
27 | TraesCS7D01G001400 | chr6D | 84.050 | 1047 | 132 | 17 | 2487 | 3505 | 433469984 | 433468945 | 0.000000e+00 | 976.0 |
28 | TraesCS7D01G001400 | chr6B | 85.363 | 854 | 100 | 15 | 2655 | 3505 | 654643395 | 654642564 | 0.000000e+00 | 861.0 |
29 | TraesCS7D01G001400 | chr5D | 89.342 | 319 | 32 | 2 | 1001 | 1318 | 464451182 | 464451499 | 1.960000e-107 | 399.0 |
30 | TraesCS7D01G001400 | chr5D | 100.000 | 28 | 0 | 0 | 419 | 446 | 113380944 | 113380917 | 6.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G001400 | chr7D | 1256398 | 1259902 | 3504 | True | 6473.000000 | 6473 | 100.000000 | 1 | 3505 | 1 | chr7D.!!$R2 | 3504 |
1 | TraesCS7D01G001400 | chr7D | 1196076 | 1198096 | 2020 | True | 1958.000000 | 1958 | 84.340000 | 1493 | 3505 | 1 | chr7D.!!$R1 | 2012 |
2 | TraesCS7D01G001400 | chr7D | 1015991 | 1018406 | 2415 | True | 1155.500000 | 1971 | 85.565500 | 999 | 3500 | 2 | chr7D.!!$R3 | 2501 |
3 | TraesCS7D01G001400 | chr7A | 761544 | 763551 | 2007 | True | 1947.000000 | 1947 | 84.289000 | 1497 | 3505 | 1 | chr7A.!!$R2 | 2008 |
4 | TraesCS7D01G001400 | chr7A | 1415835 | 1419507 | 3672 | False | 1015.000000 | 2444 | 86.253000 | 208 | 3505 | 3 | chr7A.!!$F2 | 3297 |
5 | TraesCS7D01G001400 | chr4A | 743756615 | 743758615 | 2000 | True | 2019.000000 | 2019 | 84.990000 | 1509 | 3505 | 1 | chr4A.!!$R4 | 1996 |
6 | TraesCS7D01G001400 | chr4A | 743126126 | 743128164 | 2038 | True | 1969.000000 | 1969 | 84.352000 | 1493 | 3505 | 1 | chr4A.!!$R1 | 2012 |
7 | TraesCS7D01G001400 | chr4A | 744039646 | 744041638 | 1992 | False | 1860.000000 | 1860 | 83.621000 | 1493 | 3505 | 1 | chr4A.!!$F1 | 2012 |
8 | TraesCS7D01G001400 | chr4A | 743646467 | 743648484 | 2017 | True | 1749.000000 | 1749 | 82.575000 | 1493 | 3505 | 1 | chr4A.!!$R3 | 2012 |
9 | TraesCS7D01G001400 | chr4A | 743770244 | 743771264 | 1020 | True | 808.000000 | 808 | 81.209000 | 2458 | 3505 | 1 | chr4A.!!$R5 | 1047 |
10 | TraesCS7D01G001400 | chr3B | 747709963 | 747712679 | 2716 | False | 1142.500000 | 1919 | 86.699000 | 998 | 3505 | 2 | chr3B.!!$F1 | 2507 |
11 | TraesCS7D01G001400 | chrUn | 89022229 | 89026693 | 4464 | True | 982.333333 | 1910 | 87.470667 | 1 | 3505 | 3 | chrUn.!!$R2 | 3504 |
12 | TraesCS7D01G001400 | chrUn | 51459511 | 51460080 | 569 | False | 593.000000 | 593 | 85.515000 | 2926 | 3495 | 1 | chrUn.!!$F1 | 569 |
13 | TraesCS7D01G001400 | chr7B | 59639149 | 59641482 | 2333 | True | 1120.000000 | 1892 | 86.590500 | 1045 | 3499 | 2 | chr7B.!!$R2 | 2454 |
14 | TraesCS7D01G001400 | chr6D | 433468945 | 433469984 | 1039 | True | 976.000000 | 976 | 84.050000 | 2487 | 3505 | 1 | chr6D.!!$R1 | 1018 |
15 | TraesCS7D01G001400 | chr6B | 654642564 | 654643395 | 831 | True | 861.000000 | 861 | 85.363000 | 2655 | 3505 | 1 | chr6B.!!$R1 | 850 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
969 | 1396 | 0.103026 | CGCATCGGGAGAGTTCATCA | 59.897 | 55.0 | 0.0 | 0.0 | 45.48 | 3.07 | F |
974 | 1401 | 0.179134 | CGGGAGAGTTCATCACCGTC | 60.179 | 60.0 | 0.0 | 0.0 | 42.45 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2409 | 3954 | 0.035056 | AGTGCAGGTACAATCCCAGC | 60.035 | 55.0 | 0.0 | 0.0 | 0.0 | 4.85 | R |
2868 | 4468 | 0.105039 | GGAGTCGGGGAGCTACAATG | 59.895 | 60.0 | 0.0 | 0.0 | 0.0 | 2.82 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 39 | 7.865706 | ATGATGAACGAATACTTTTTAGGCT | 57.134 | 32.000 | 0.00 | 0.00 | 0.00 | 4.58 |
44 | 46 | 5.064325 | ACGAATACTTTTTAGGCTAAAGGCG | 59.936 | 40.000 | 18.30 | 15.90 | 46.23 | 5.52 |
58 | 60 | 4.319549 | GCTAAAGGCGTAGGTATGCAATTC | 60.320 | 45.833 | 0.00 | 0.00 | 39.92 | 2.17 |
65 | 67 | 2.348411 | AGGTATGCAATTCTTCCCCG | 57.652 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
123 | 125 | 4.041723 | GCCAATGGTACGCAATTATTCAC | 58.958 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
128 | 130 | 7.415765 | CCAATGGTACGCAATTATTCACCTTAA | 60.416 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
129 | 131 | 7.817418 | ATGGTACGCAATTATTCACCTTAAT | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
130 | 132 | 7.633193 | TGGTACGCAATTATTCACCTTAATT | 57.367 | 32.000 | 0.00 | 0.00 | 31.13 | 1.40 |
131 | 133 | 8.734218 | TGGTACGCAATTATTCACCTTAATTA | 57.266 | 30.769 | 0.00 | 0.00 | 30.18 | 1.40 |
229 | 231 | 9.099454 | GTCTCTAGGTTTACAATTGTTATGAGG | 57.901 | 37.037 | 17.78 | 2.94 | 0.00 | 3.86 |
232 | 234 | 9.226606 | TCTAGGTTTACAATTGTTATGAGGTTG | 57.773 | 33.333 | 17.78 | 0.96 | 0.00 | 3.77 |
352 | 360 | 2.853705 | AGACTCGTAGGGCTGTAGATC | 58.146 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
359 | 367 | 0.820074 | AGGGCTGTAGATCGAGACCG | 60.820 | 60.000 | 8.26 | 0.00 | 42.97 | 4.79 |
367 | 375 | 0.179134 | AGATCGAGACCGCCTTTTCG | 60.179 | 55.000 | 0.00 | 0.00 | 35.37 | 3.46 |
368 | 376 | 1.753468 | GATCGAGACCGCCTTTTCGC | 61.753 | 60.000 | 0.00 | 0.00 | 35.37 | 4.70 |
378 | 386 | 0.955905 | GCCTTTTCGCAAACTACCCA | 59.044 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
453 | 466 | 8.783660 | TCTCTCCAATCCATATTACTACTTGT | 57.216 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
454 | 467 | 9.213777 | TCTCTCCAATCCATATTACTACTTGTT | 57.786 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
456 | 469 | 8.768397 | TCTCCAATCCATATTACTACTTGTTGT | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
469 | 599 | 6.351327 | CTACTTGTTGTAGCTTTATGGAGC | 57.649 | 41.667 | 0.00 | 0.00 | 41.68 | 4.70 |
493 | 623 | 6.541278 | GCGTAGGGAGTAATTTTATTTGGTCT | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
496 | 626 | 7.939784 | AGGGAGTAATTTTATTTGGTCTGTC | 57.060 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
527 | 657 | 1.604278 | CGCGTCCTCTGTCTATCATCA | 59.396 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
528 | 658 | 2.227626 | CGCGTCCTCTGTCTATCATCAT | 59.772 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
529 | 659 | 3.573598 | GCGTCCTCTGTCTATCATCATG | 58.426 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
539 | 669 | 3.993081 | GTCTATCATCATGCCCGAGAAAG | 59.007 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
542 | 672 | 0.749091 | CATCATGCCCGAGAAAGCCA | 60.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
548 | 678 | 1.460273 | GCCCGAGAAAGCCAAAACCA | 61.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
550 | 680 | 1.269569 | CCCGAGAAAGCCAAAACCAAC | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
551 | 681 | 1.407258 | CCGAGAAAGCCAAAACCAACA | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
552 | 682 | 2.459934 | CGAGAAAGCCAAAACCAACAC | 58.540 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
553 | 683 | 2.099098 | CGAGAAAGCCAAAACCAACACT | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
554 | 684 | 3.706698 | GAGAAAGCCAAAACCAACACTC | 58.293 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
555 | 685 | 3.096092 | AGAAAGCCAAAACCAACACTCA | 58.904 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
556 | 686 | 2.959507 | AAGCCAAAACCAACACTCAC | 57.040 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
557 | 687 | 1.111277 | AGCCAAAACCAACACTCACC | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
558 | 688 | 1.111277 | GCCAAAACCAACACTCACCT | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
559 | 689 | 2.092103 | AGCCAAAACCAACACTCACCTA | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
560 | 690 | 2.034179 | GCCAAAACCAACACTCACCTAC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
561 | 691 | 2.621526 | CCAAAACCAACACTCACCTACC | 59.378 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
562 | 692 | 3.551846 | CAAAACCAACACTCACCTACCT | 58.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
563 | 693 | 4.445162 | CCAAAACCAACACTCACCTACCTA | 60.445 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
564 | 694 | 5.127491 | CAAAACCAACACTCACCTACCTAA | 58.873 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
565 | 695 | 5.578157 | AAACCAACACTCACCTACCTAAT | 57.422 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
566 | 696 | 6.691255 | AAACCAACACTCACCTACCTAATA | 57.309 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
567 | 697 | 5.934402 | ACCAACACTCACCTACCTAATAG | 57.066 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
570 | 700 | 3.990369 | ACACTCACCTACCTAATAGCCA | 58.010 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
584 | 714 | 2.024176 | TAGCCAACCTGGTGAGAGAA | 57.976 | 50.000 | 0.00 | 0.00 | 40.46 | 2.87 |
586 | 716 | 0.957888 | GCCAACCTGGTGAGAGAAGC | 60.958 | 60.000 | 0.00 | 0.00 | 40.46 | 3.86 |
587 | 717 | 0.671781 | CCAACCTGGTGAGAGAAGCG | 60.672 | 60.000 | 0.00 | 0.00 | 31.35 | 4.68 |
619 | 991 | 9.918630 | ATGTTCAGAGGTTGATTTTGAAATTAG | 57.081 | 29.630 | 0.00 | 0.00 | 35.27 | 1.73 |
714 | 1086 | 9.554395 | TCAAAATCAAATTTAAAGGGAGGAAAC | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
715 | 1087 | 9.336171 | CAAAATCAAATTTAAAGGGAGGAAACA | 57.664 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
716 | 1088 | 9.913310 | AAAATCAAATTTAAAGGGAGGAAACAA | 57.087 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
717 | 1089 | 8.902540 | AATCAAATTTAAAGGGAGGAAACAAC | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
718 | 1090 | 7.425224 | TCAAATTTAAAGGGAGGAAACAACA | 57.575 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
743 | 1115 | 7.175467 | CAGCAATCCATTTAATACTAGATGCCA | 59.825 | 37.037 | 0.00 | 0.00 | 0.00 | 4.92 |
807 | 1179 | 4.735369 | TCTTAAAATCTGTGGGAAGCCAA | 58.265 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
860 | 1232 | 7.345691 | TGGTGCAAAATCCTGAAATAGATAGA | 58.654 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
890 | 1262 | 9.710900 | TTGAATATGCCATACAAGATAGTACTG | 57.289 | 33.333 | 5.39 | 0.00 | 0.00 | 2.74 |
925 | 1326 | 2.012902 | GCCTCTGCAATCATGTGGCC | 62.013 | 60.000 | 0.00 | 0.00 | 37.47 | 5.36 |
926 | 1327 | 1.721664 | CCTCTGCAATCATGTGGCCG | 61.722 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
927 | 1328 | 1.002257 | TCTGCAATCATGTGGCCGT | 60.002 | 52.632 | 0.00 | 0.00 | 0.00 | 5.68 |
930 | 1331 | 0.680601 | TGCAATCATGTGGCCGTCAT | 60.681 | 50.000 | 7.32 | 7.32 | 0.00 | 3.06 |
931 | 1332 | 1.308047 | GCAATCATGTGGCCGTCATA | 58.692 | 50.000 | 11.94 | 3.64 | 0.00 | 2.15 |
932 | 1333 | 1.002468 | GCAATCATGTGGCCGTCATAC | 60.002 | 52.381 | 11.94 | 0.00 | 0.00 | 2.39 |
936 | 1337 | 2.384828 | TCATGTGGCCGTCATACTACT | 58.615 | 47.619 | 11.94 | 0.00 | 0.00 | 2.57 |
937 | 1338 | 3.558033 | TCATGTGGCCGTCATACTACTA | 58.442 | 45.455 | 11.94 | 0.00 | 0.00 | 1.82 |
940 | 1341 | 2.686405 | TGTGGCCGTCATACTACTAGTG | 59.314 | 50.000 | 5.39 | 0.00 | 0.00 | 2.74 |
941 | 1342 | 2.686915 | GTGGCCGTCATACTACTAGTGT | 59.313 | 50.000 | 5.39 | 4.48 | 0.00 | 3.55 |
942 | 1343 | 3.879295 | GTGGCCGTCATACTACTAGTGTA | 59.121 | 47.826 | 5.39 | 6.64 | 0.00 | 2.90 |
946 | 1347 | 5.936956 | GGCCGTCATACTACTAGTGTACTAT | 59.063 | 44.000 | 5.39 | 0.00 | 0.00 | 2.12 |
948 | 1349 | 7.360776 | GGCCGTCATACTACTAGTGTACTATTC | 60.361 | 44.444 | 5.39 | 0.00 | 0.00 | 1.75 |
950 | 1351 | 8.924691 | CCGTCATACTACTAGTGTACTATTCTC | 58.075 | 40.741 | 5.39 | 0.00 | 0.00 | 2.87 |
969 | 1396 | 0.103026 | CGCATCGGGAGAGTTCATCA | 59.897 | 55.000 | 0.00 | 0.00 | 45.48 | 3.07 |
970 | 1397 | 1.576356 | GCATCGGGAGAGTTCATCAC | 58.424 | 55.000 | 0.00 | 0.00 | 45.48 | 3.06 |
971 | 1398 | 1.808133 | GCATCGGGAGAGTTCATCACC | 60.808 | 57.143 | 0.00 | 0.00 | 45.48 | 4.02 |
974 | 1401 | 0.179134 | CGGGAGAGTTCATCACCGTC | 60.179 | 60.000 | 0.00 | 0.00 | 42.45 | 4.79 |
975 | 1402 | 0.895530 | GGGAGAGTTCATCACCGTCA | 59.104 | 55.000 | 0.00 | 0.00 | 39.44 | 4.35 |
976 | 1403 | 1.404315 | GGGAGAGTTCATCACCGTCAC | 60.404 | 57.143 | 0.00 | 0.00 | 39.44 | 3.67 |
977 | 1404 | 1.404315 | GGAGAGTTCATCACCGTCACC | 60.404 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
978 | 1405 | 1.546476 | GAGAGTTCATCACCGTCACCT | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
979 | 1406 | 1.273606 | AGAGTTCATCACCGTCACCTG | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
980 | 1407 | 0.320771 | AGTTCATCACCGTCACCTGC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
981 | 1408 | 1.003839 | TTCATCACCGTCACCTGCC | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
982 | 1409 | 2.779951 | TTCATCACCGTCACCTGCCG | 62.780 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1343 | 2869 | 6.267471 | TGTCCTGCCTTTCAATTTCAGTTTAT | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1344 | 2870 | 7.154656 | GTCCTGCCTTTCAATTTCAGTTTATT | 58.845 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1345 | 2871 | 7.657354 | GTCCTGCCTTTCAATTTCAGTTTATTT | 59.343 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1350 | 2876 | 9.650371 | GCCTTTCAATTTCAGTTTATTTGTTTC | 57.350 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
1373 | 2899 | 6.355747 | TCCAATTGGAAATGCAAGTCTTTTT | 58.644 | 32.000 | 25.13 | 0.00 | 42.18 | 1.94 |
1375 | 2901 | 7.656948 | TCCAATTGGAAATGCAAGTCTTTTTAG | 59.343 | 33.333 | 25.13 | 0.00 | 42.18 | 1.85 |
1379 | 2905 | 8.419076 | TTGGAAATGCAAGTCTTTTTAGTTTC | 57.581 | 30.769 | 0.00 | 0.00 | 0.00 | 2.78 |
1380 | 2906 | 7.551585 | TGGAAATGCAAGTCTTTTTAGTTTCA | 58.448 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
1381 | 2907 | 7.706179 | TGGAAATGCAAGTCTTTTTAGTTTCAG | 59.294 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
1382 | 2908 | 7.706607 | GGAAATGCAAGTCTTTTTAGTTTCAGT | 59.293 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1383 | 2909 | 9.087424 | GAAATGCAAGTCTTTTTAGTTTCAGTT | 57.913 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
1384 | 2910 | 9.435688 | AAATGCAAGTCTTTTTAGTTTCAGTTT | 57.564 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
1387 | 2913 | 9.567848 | TGCAAGTCTTTTTAGTTTCAGTTTAAG | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
1404 | 2938 | 9.267084 | TCAGTTTAAGGTTTTAATTGGAAATGC | 57.733 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
1413 | 2947 | 6.799926 | TTTAATTGGAAATGCAAGCCTTTC | 57.200 | 33.333 | 12.49 | 12.49 | 32.37 | 2.62 |
1423 | 2957 | 5.726980 | ATGCAAGCCTTTCAATTTCTGTA | 57.273 | 34.783 | 0.00 | 0.00 | 0.00 | 2.74 |
1424 | 2958 | 5.125100 | TGCAAGCCTTTCAATTTCTGTAG | 57.875 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
1425 | 2959 | 4.826733 | TGCAAGCCTTTCAATTTCTGTAGA | 59.173 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
1426 | 2960 | 5.048504 | TGCAAGCCTTTCAATTTCTGTAGAG | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1427 | 2961 | 5.620879 | GCAAGCCTTTCAATTTCTGTAGAGG | 60.621 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1428 | 2962 | 4.593956 | AGCCTTTCAATTTCTGTAGAGGG | 58.406 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1429 | 2963 | 3.129462 | GCCTTTCAATTTCTGTAGAGGGC | 59.871 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
1430 | 2964 | 4.593956 | CCTTTCAATTTCTGTAGAGGGCT | 58.406 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
1431 | 2965 | 5.012893 | CCTTTCAATTTCTGTAGAGGGCTT | 58.987 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1434 | 2968 | 5.241403 | TCAATTTCTGTAGAGGGCTTTCA | 57.759 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1447 | 2981 | 4.106324 | AGGGCTTTCATTTGGAAATGGAT | 58.894 | 39.130 | 11.30 | 0.00 | 44.18 | 3.41 |
1448 | 2982 | 4.162888 | AGGGCTTTCATTTGGAAATGGATC | 59.837 | 41.667 | 11.30 | 0.00 | 44.18 | 3.36 |
1449 | 2983 | 4.114794 | GGCTTTCATTTGGAAATGGATCG | 58.885 | 43.478 | 11.30 | 0.67 | 44.18 | 3.69 |
1450 | 2984 | 4.114794 | GCTTTCATTTGGAAATGGATCGG | 58.885 | 43.478 | 11.30 | 0.23 | 44.18 | 4.18 |
1451 | 2985 | 4.142182 | GCTTTCATTTGGAAATGGATCGGA | 60.142 | 41.667 | 11.30 | 0.00 | 44.18 | 4.55 |
1453 | 2987 | 5.581126 | TTCATTTGGAAATGGATCGGAAG | 57.419 | 39.130 | 11.30 | 0.00 | 44.51 | 3.46 |
1455 | 2989 | 1.762708 | TTGGAAATGGATCGGAAGCC | 58.237 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1460 | 2994 | 2.806945 | AATGGATCGGAAGCCTTTCA | 57.193 | 45.000 | 2.56 | 0.00 | 34.90 | 2.69 |
1467 | 3001 | 4.082245 | GGATCGGAAGCCTTTCAATTTCAA | 60.082 | 41.667 | 0.00 | 0.00 | 34.90 | 2.69 |
1468 | 3002 | 5.394553 | GGATCGGAAGCCTTTCAATTTCAAT | 60.395 | 40.000 | 0.00 | 0.00 | 34.90 | 2.57 |
1471 | 3005 | 5.695816 | TCGGAAGCCTTTCAATTTCAATTTG | 59.304 | 36.000 | 0.00 | 0.00 | 34.90 | 2.32 |
1472 | 3006 | 5.466393 | CGGAAGCCTTTCAATTTCAATTTGT | 59.534 | 36.000 | 0.00 | 0.00 | 34.90 | 2.83 |
1473 | 3007 | 6.018016 | CGGAAGCCTTTCAATTTCAATTTGTT | 60.018 | 34.615 | 0.00 | 0.00 | 34.90 | 2.83 |
1474 | 3008 | 7.467131 | CGGAAGCCTTTCAATTTCAATTTGTTT | 60.467 | 33.333 | 0.00 | 0.00 | 34.90 | 2.83 |
1475 | 3009 | 7.644945 | GGAAGCCTTTCAATTTCAATTTGTTTG | 59.355 | 33.333 | 0.00 | 0.79 | 34.90 | 2.93 |
1476 | 3010 | 7.628769 | AGCCTTTCAATTTCAATTTGTTTGT | 57.371 | 28.000 | 0.00 | 0.00 | 36.65 | 2.83 |
1477 | 3011 | 8.054152 | AGCCTTTCAATTTCAATTTGTTTGTT | 57.946 | 26.923 | 0.00 | 0.00 | 36.65 | 2.83 |
1479 | 3013 | 8.585436 | GCCTTTCAATTTCAATTTGTTTGTTTG | 58.415 | 29.630 | 0.00 | 0.00 | 36.65 | 2.93 |
1480 | 3014 | 9.623350 | CCTTTCAATTTCAATTTGTTTGTTTGT | 57.377 | 25.926 | 0.00 | 0.00 | 36.65 | 2.83 |
1484 | 3018 | 9.956720 | TCAATTTCAATTTGTTTGTTTGTTTGT | 57.043 | 22.222 | 0.00 | 0.00 | 36.65 | 2.83 |
1488 | 3022 | 9.573133 | TTTCAATTTGTTTGTTTGTTTGTTTGT | 57.427 | 22.222 | 0.00 | 0.00 | 36.65 | 2.83 |
1490 | 3024 | 9.573133 | TCAATTTGTTTGTTTGTTTGTTTGTTT | 57.427 | 22.222 | 0.00 | 0.00 | 36.65 | 2.83 |
1523 | 3057 | 1.565759 | TCATTTCAGGTGCTGGGCTAT | 59.434 | 47.619 | 0.00 | 0.00 | 31.51 | 2.97 |
1639 | 3173 | 5.008217 | TGAACAATTTCCACTTCCTACAACG | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1701 | 3235 | 4.989279 | TGTGTCGATGAATCAGAGATCA | 57.011 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
1772 | 3312 | 5.003160 | CACTCCAACAACAGTAATGATGGA | 58.997 | 41.667 | 5.42 | 8.08 | 44.50 | 3.41 |
1773 | 3313 | 5.003804 | ACTCCAACAACAGTAATGATGGAC | 58.996 | 41.667 | 5.42 | 0.00 | 42.63 | 4.02 |
1880 | 3422 | 4.624024 | GTGATGCATCATTTTGAGTTGGTG | 59.376 | 41.667 | 30.89 | 0.00 | 39.30 | 4.17 |
1909 | 3451 | 3.198068 | TCTGTGTCTCTGACAAGTTTGC | 58.802 | 45.455 | 1.73 | 0.00 | 44.49 | 3.68 |
1918 | 3460 | 4.245660 | TCTGACAAGTTTGCTATCGAAGG | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
1976 | 3518 | 2.622064 | AGTGTGGTTTGACTCAGACC | 57.378 | 50.000 | 11.17 | 11.17 | 38.84 | 3.85 |
1994 | 3536 | 2.031516 | CGAGGCACTGCACAAGGAG | 61.032 | 63.158 | 2.82 | 0.00 | 41.55 | 3.69 |
2085 | 3627 | 4.862902 | AAGTGGGACGATATGAGATCAG | 57.137 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2106 | 3648 | 2.270257 | TTGTGCTCACATGCTGGCC | 61.270 | 57.895 | 3.31 | 0.00 | 41.52 | 5.36 |
2107 | 3649 | 2.360852 | GTGCTCACATGCTGGCCT | 60.361 | 61.111 | 3.32 | 0.00 | 0.00 | 5.19 |
2116 | 3658 | 0.833287 | CATGCTGGCCTAGGTAGTGT | 59.167 | 55.000 | 11.31 | 0.43 | 0.00 | 3.55 |
2141 | 3683 | 3.782244 | GTGACAAGCCGCAGCGAG | 61.782 | 66.667 | 18.75 | 7.72 | 46.67 | 5.03 |
2225 | 3767 | 4.796038 | ATCATGGGAGCTTTTTCACAAG | 57.204 | 40.909 | 0.00 | 0.00 | 33.48 | 3.16 |
2264 | 3806 | 5.183904 | GGAAGCAGAAAAGCAAGAGGAATTA | 59.816 | 40.000 | 0.00 | 0.00 | 36.85 | 1.40 |
2279 | 3821 | 8.522830 | CAAGAGGAATTAGTTTCAATGGCTAAA | 58.477 | 33.333 | 0.00 | 0.00 | 35.94 | 1.85 |
2312 | 3854 | 3.274288 | CAAGTGTAAGGGATTGCCTCTC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2354 | 3896 | 4.377022 | GCTTTACTTCGTTCGAAGCATCAA | 60.377 | 41.667 | 27.36 | 16.55 | 43.76 | 2.57 |
2409 | 3954 | 2.208431 | GGAAGAATGACATCCTCGCAG | 58.792 | 52.381 | 0.00 | 0.00 | 34.02 | 5.18 |
2466 | 4011 | 5.428496 | TCACTTGTCATCAGAAGCAAAAG | 57.572 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
2557 | 4102 | 8.416329 | AGTTATGGATGGCAAATGACTTTATTC | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
2766 | 4359 | 7.228108 | TCCATTCTACAAGAATCTTCATCATGC | 59.772 | 37.037 | 0.00 | 0.00 | 42.67 | 4.06 |
2787 | 4380 | 3.194116 | GCCAAGAAATTCTGCAAGGATCA | 59.806 | 43.478 | 0.00 | 0.00 | 22.58 | 2.92 |
2808 | 4408 | 6.968131 | TCAACAGATAGTTCATTACAGCAC | 57.032 | 37.500 | 0.00 | 0.00 | 38.74 | 4.40 |
2830 | 4430 | 4.331717 | ACGAAGTTCGACATTTGTCACTTT | 59.668 | 37.500 | 30.77 | 0.74 | 43.74 | 2.66 |
2868 | 4468 | 3.550437 | ACTATTGCAGTCATGGAGGAC | 57.450 | 47.619 | 0.00 | 0.00 | 38.08 | 3.85 |
2872 | 4472 | 2.118313 | TGCAGTCATGGAGGACATTG | 57.882 | 50.000 | 0.00 | 0.00 | 40.29 | 2.82 |
2885 | 4485 | 0.824759 | GACATTGTAGCTCCCCGACT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2893 | 4493 | 3.461773 | CTCCCCGACTCCGCACAT | 61.462 | 66.667 | 0.00 | 0.00 | 0.00 | 3.21 |
2923 | 4541 | 4.431661 | CAAAAGGAGTTGGAGCAGATTC | 57.568 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2934 | 4570 | 3.949132 | GGAGCAGATTCAGACTCCTTTT | 58.051 | 45.455 | 10.69 | 0.00 | 44.41 | 2.27 |
2955 | 4591 | 7.877612 | CCTTTTAGTATGGCCAAGTCAAAATTT | 59.122 | 33.333 | 10.96 | 0.00 | 0.00 | 1.82 |
3009 | 4645 | 9.500785 | TCAATCAAGACACATATGACAAACTTA | 57.499 | 29.630 | 10.38 | 0.00 | 0.00 | 2.24 |
3132 | 4768 | 9.811995 | GGTTGTGAAAAACTTAAGAAATTACCT | 57.188 | 29.630 | 10.09 | 0.00 | 0.00 | 3.08 |
3270 | 4906 | 3.812262 | TGTCATTGATAGTGATGCAGGG | 58.188 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
3309 | 4945 | 7.573968 | ACTCAAATATTTGAATCTAGGTGGC | 57.426 | 36.000 | 26.57 | 0.00 | 45.61 | 5.01 |
3369 | 5005 | 3.676646 | CAGAAAATGCTAAACAAGGCAGC | 59.323 | 43.478 | 0.00 | 0.00 | 41.88 | 5.25 |
3421 | 5060 | 3.127030 | GTCACTCGATTGGGAAAATGGAC | 59.873 | 47.826 | 2.65 | 0.00 | 0.00 | 4.02 |
3422 | 5061 | 2.423538 | CACTCGATTGGGAAAATGGACC | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3455 | 5097 | 4.209911 | CACACATGCTGGATATGAAGTACG | 59.790 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
3460 | 5102 | 6.646653 | ACATGCTGGATATGAAGTACGTAATG | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 19 | 7.361457 | GCCTTTAGCCTAAAAAGTATTCGTTCA | 60.361 | 37.037 | 0.00 | 0.00 | 33.05 | 3.18 |
37 | 39 | 5.031066 | AGAATTGCATACCTACGCCTTTA | 57.969 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
44 | 46 | 3.139077 | CGGGGAAGAATTGCATACCTAC | 58.861 | 50.000 | 0.00 | 0.00 | 38.65 | 3.18 |
58 | 60 | 8.424918 | AGCTATAAATATCATGATACGGGGAAG | 58.575 | 37.037 | 17.60 | 11.61 | 0.00 | 3.46 |
173 | 175 | 3.637229 | TGATCTTGGCAGGTAGTACTAGC | 59.363 | 47.826 | 21.85 | 21.85 | 0.00 | 3.42 |
177 | 179 | 4.572389 | CACATTGATCTTGGCAGGTAGTAC | 59.428 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
247 | 254 | 7.029563 | GCCACATCGATTTGAGTTAATTTCTT | 58.970 | 34.615 | 13.10 | 0.00 | 0.00 | 2.52 |
327 | 335 | 1.686110 | AGCCCTACGAGTCTTGGGG | 60.686 | 63.158 | 13.26 | 13.26 | 39.99 | 4.96 |
330 | 338 | 2.366533 | TCTACAGCCCTACGAGTCTTG | 58.633 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
352 | 360 | 1.837538 | TTTGCGAAAAGGCGGTCTCG | 61.838 | 55.000 | 0.00 | 0.00 | 39.81 | 4.04 |
359 | 367 | 0.955905 | TGGGTAGTTTGCGAAAAGGC | 59.044 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
429 | 442 | 9.265901 | CAACAAGTAGTAATATGGATTGGAGAG | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
448 | 461 | 3.684788 | CGCTCCATAAAGCTACAACAAGT | 59.315 | 43.478 | 0.00 | 0.00 | 40.23 | 3.16 |
449 | 462 | 3.684788 | ACGCTCCATAAAGCTACAACAAG | 59.315 | 43.478 | 0.00 | 0.00 | 40.23 | 3.16 |
451 | 464 | 3.328382 | ACGCTCCATAAAGCTACAACA | 57.672 | 42.857 | 0.00 | 0.00 | 40.23 | 3.33 |
453 | 466 | 3.181469 | CCCTACGCTCCATAAAGCTACAA | 60.181 | 47.826 | 0.00 | 0.00 | 40.23 | 2.41 |
454 | 467 | 2.364324 | CCCTACGCTCCATAAAGCTACA | 59.636 | 50.000 | 0.00 | 0.00 | 40.23 | 2.74 |
456 | 469 | 2.891580 | CTCCCTACGCTCCATAAAGCTA | 59.108 | 50.000 | 0.00 | 0.00 | 40.23 | 3.32 |
457 | 470 | 1.689273 | CTCCCTACGCTCCATAAAGCT | 59.311 | 52.381 | 0.00 | 0.00 | 40.23 | 3.74 |
458 | 471 | 1.413077 | ACTCCCTACGCTCCATAAAGC | 59.587 | 52.381 | 0.00 | 0.00 | 38.97 | 3.51 |
459 | 472 | 4.931661 | TTACTCCCTACGCTCCATAAAG | 57.068 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
460 | 473 | 5.881923 | AATTACTCCCTACGCTCCATAAA | 57.118 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
461 | 474 | 5.881923 | AAATTACTCCCTACGCTCCATAA | 57.118 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
463 | 476 | 4.772886 | AAAATTACTCCCTACGCTCCAT | 57.227 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
464 | 477 | 5.881923 | ATAAAATTACTCCCTACGCTCCA | 57.118 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
465 | 478 | 6.017357 | CCAAATAAAATTACTCCCTACGCTCC | 60.017 | 42.308 | 0.00 | 0.00 | 0.00 | 4.70 |
469 | 599 | 7.551617 | ACAGACCAAATAAAATTACTCCCTACG | 59.448 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
527 | 657 | 0.603065 | GTTTTGGCTTTCTCGGGCAT | 59.397 | 50.000 | 0.00 | 0.00 | 38.95 | 4.40 |
528 | 658 | 1.460273 | GGTTTTGGCTTTCTCGGGCA | 61.460 | 55.000 | 0.00 | 0.00 | 37.47 | 5.36 |
529 | 659 | 1.289066 | GGTTTTGGCTTTCTCGGGC | 59.711 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
539 | 669 | 1.111277 | AGGTGAGTGTTGGTTTTGGC | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
542 | 672 | 3.945640 | AGGTAGGTGAGTGTTGGTTTT | 57.054 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
548 | 678 | 4.359105 | TGGCTATTAGGTAGGTGAGTGTT | 58.641 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
550 | 680 | 4.443034 | GGTTGGCTATTAGGTAGGTGAGTG | 60.443 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
551 | 681 | 3.710165 | GGTTGGCTATTAGGTAGGTGAGT | 59.290 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
552 | 682 | 3.967987 | AGGTTGGCTATTAGGTAGGTGAG | 59.032 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
553 | 683 | 3.709653 | CAGGTTGGCTATTAGGTAGGTGA | 59.290 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
554 | 684 | 3.181454 | CCAGGTTGGCTATTAGGTAGGTG | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
555 | 685 | 3.046374 | CCAGGTTGGCTATTAGGTAGGT | 58.954 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
556 | 686 | 3.046374 | ACCAGGTTGGCTATTAGGTAGG | 58.954 | 50.000 | 0.00 | 0.00 | 42.67 | 3.18 |
557 | 687 | 3.709653 | TCACCAGGTTGGCTATTAGGTAG | 59.290 | 47.826 | 0.00 | 0.00 | 42.67 | 3.18 |
558 | 688 | 3.709653 | CTCACCAGGTTGGCTATTAGGTA | 59.290 | 47.826 | 0.00 | 0.00 | 42.67 | 3.08 |
559 | 689 | 2.505819 | CTCACCAGGTTGGCTATTAGGT | 59.494 | 50.000 | 0.00 | 0.00 | 42.67 | 3.08 |
560 | 690 | 2.771943 | TCTCACCAGGTTGGCTATTAGG | 59.228 | 50.000 | 0.00 | 0.00 | 42.67 | 2.69 |
561 | 691 | 3.706594 | TCTCTCACCAGGTTGGCTATTAG | 59.293 | 47.826 | 0.00 | 0.00 | 42.67 | 1.73 |
562 | 692 | 3.719871 | TCTCTCACCAGGTTGGCTATTA | 58.280 | 45.455 | 0.00 | 0.00 | 42.67 | 0.98 |
563 | 693 | 2.551270 | TCTCTCACCAGGTTGGCTATT | 58.449 | 47.619 | 0.00 | 0.00 | 42.67 | 1.73 |
564 | 694 | 2.254152 | TCTCTCACCAGGTTGGCTAT | 57.746 | 50.000 | 0.00 | 0.00 | 42.67 | 2.97 |
565 | 695 | 1.902508 | CTTCTCTCACCAGGTTGGCTA | 59.097 | 52.381 | 0.00 | 0.00 | 42.67 | 3.93 |
566 | 696 | 0.689623 | CTTCTCTCACCAGGTTGGCT | 59.310 | 55.000 | 0.00 | 0.00 | 42.67 | 4.75 |
567 | 697 | 0.957888 | GCTTCTCTCACCAGGTTGGC | 60.958 | 60.000 | 0.00 | 0.00 | 42.67 | 4.52 |
570 | 700 | 0.034059 | CACGCTTCTCTCACCAGGTT | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
584 | 714 | 1.276421 | ACCTCTGAACATTAGCACGCT | 59.724 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
586 | 716 | 3.325870 | TCAACCTCTGAACATTAGCACG | 58.674 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
587 | 717 | 5.886960 | AATCAACCTCTGAACATTAGCAC | 57.113 | 39.130 | 0.00 | 0.00 | 37.67 | 4.40 |
704 | 1076 | 2.519013 | GATTGCTGTTGTTTCCTCCCT | 58.481 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
707 | 1079 | 4.525912 | AATGGATTGCTGTTGTTTCCTC | 57.474 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
708 | 1080 | 4.961438 | AAATGGATTGCTGTTGTTTCCT | 57.039 | 36.364 | 0.00 | 0.00 | 0.00 | 3.36 |
710 | 1082 | 8.986477 | AGTATTAAATGGATTGCTGTTGTTTC | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 2.78 |
713 | 1085 | 9.632638 | ATCTAGTATTAAATGGATTGCTGTTGT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
714 | 1086 | 9.888878 | CATCTAGTATTAAATGGATTGCTGTTG | 57.111 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
715 | 1087 | 8.571336 | GCATCTAGTATTAAATGGATTGCTGTT | 58.429 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
716 | 1088 | 7.175641 | GGCATCTAGTATTAAATGGATTGCTGT | 59.824 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
717 | 1089 | 7.175467 | TGGCATCTAGTATTAAATGGATTGCTG | 59.825 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
718 | 1090 | 7.233632 | TGGCATCTAGTATTAAATGGATTGCT | 58.766 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
743 | 1115 | 7.206981 | AGAGATTTCACGTGTTTCATTTCAT | 57.793 | 32.000 | 16.51 | 0.00 | 0.00 | 2.57 |
783 | 1155 | 3.696548 | GGCTTCCCACAGATTTTAAGAGG | 59.303 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
872 | 1244 | 6.816640 | TGTTGAACAGTACTATCTTGTATGGC | 59.183 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
873 | 1245 | 8.771920 | TTGTTGAACAGTACTATCTTGTATGG | 57.228 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
874 | 1246 | 9.639601 | TCTTGTTGAACAGTACTATCTTGTATG | 57.360 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
882 | 1254 | 9.765795 | GGCTATTATCTTGTTGAACAGTACTAT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
883 | 1255 | 8.978472 | AGGCTATTATCTTGTTGAACAGTACTA | 58.022 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
884 | 1256 | 7.852263 | AGGCTATTATCTTGTTGAACAGTACT | 58.148 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
885 | 1257 | 7.982354 | AGAGGCTATTATCTTGTTGAACAGTAC | 59.018 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
886 | 1258 | 7.981789 | CAGAGGCTATTATCTTGTTGAACAGTA | 59.018 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
887 | 1259 | 6.820656 | CAGAGGCTATTATCTTGTTGAACAGT | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
888 | 1260 | 6.238320 | GCAGAGGCTATTATCTTGTTGAACAG | 60.238 | 42.308 | 0.00 | 0.00 | 36.96 | 3.16 |
889 | 1261 | 5.586243 | GCAGAGGCTATTATCTTGTTGAACA | 59.414 | 40.000 | 0.00 | 0.00 | 36.96 | 3.18 |
890 | 1262 | 5.586243 | TGCAGAGGCTATTATCTTGTTGAAC | 59.414 | 40.000 | 0.00 | 0.00 | 41.91 | 3.18 |
925 | 1326 | 8.637704 | CGAGAATAGTACACTAGTAGTATGACG | 58.362 | 40.741 | 1.57 | 0.00 | 43.01 | 4.35 |
926 | 1327 | 8.434661 | GCGAGAATAGTACACTAGTAGTATGAC | 58.565 | 40.741 | 1.57 | 1.73 | 43.01 | 3.06 |
927 | 1328 | 8.146412 | TGCGAGAATAGTACACTAGTAGTATGA | 58.854 | 37.037 | 1.57 | 0.00 | 43.01 | 2.15 |
930 | 1331 | 7.328005 | CGATGCGAGAATAGTACACTAGTAGTA | 59.672 | 40.741 | 1.57 | 0.00 | 39.70 | 1.82 |
931 | 1332 | 6.145858 | CGATGCGAGAATAGTACACTAGTAGT | 59.854 | 42.308 | 0.00 | 0.00 | 37.61 | 2.73 |
932 | 1333 | 6.401260 | CCGATGCGAGAATAGTACACTAGTAG | 60.401 | 46.154 | 0.00 | 0.00 | 0.00 | 2.57 |
936 | 1337 | 3.501062 | CCCGATGCGAGAATAGTACACTA | 59.499 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
937 | 1338 | 2.293677 | CCCGATGCGAGAATAGTACACT | 59.706 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
940 | 1341 | 2.812591 | TCTCCCGATGCGAGAATAGTAC | 59.187 | 50.000 | 0.00 | 0.00 | 33.44 | 2.73 |
941 | 1342 | 3.075148 | CTCTCCCGATGCGAGAATAGTA | 58.925 | 50.000 | 0.00 | 0.00 | 35.98 | 1.82 |
942 | 1343 | 1.883275 | CTCTCCCGATGCGAGAATAGT | 59.117 | 52.381 | 0.00 | 0.00 | 35.98 | 2.12 |
946 | 1347 | 0.456221 | GAACTCTCCCGATGCGAGAA | 59.544 | 55.000 | 0.00 | 0.00 | 35.98 | 2.87 |
948 | 1349 | 0.387202 | ATGAACTCTCCCGATGCGAG | 59.613 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
950 | 1351 | 0.103026 | TGATGAACTCTCCCGATGCG | 59.897 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
986 | 1413 | 2.202987 | CCATCTGGGAGCAGTCGC | 60.203 | 66.667 | 0.00 | 0.00 | 40.01 | 5.19 |
988 | 1415 | 0.463474 | GAAGCCATCTGGGAGCAGTC | 60.463 | 60.000 | 0.00 | 0.00 | 40.01 | 3.51 |
993 | 1420 | 1.530771 | CAGGGAAGCCATCTGGGAG | 59.469 | 63.158 | 0.00 | 0.00 | 40.01 | 4.30 |
995 | 1422 | 2.123982 | GCAGGGAAGCCATCTGGG | 60.124 | 66.667 | 0.00 | 0.00 | 40.85 | 4.45 |
996 | 1423 | 1.153005 | GAGCAGGGAAGCCATCTGG | 60.153 | 63.158 | 0.00 | 0.00 | 38.53 | 3.86 |
1183 | 2148 | 3.637273 | GTCCTTGACCCACCGGCT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
1277 | 2245 | 4.335647 | AGCAGCGGTGGAACTGGG | 62.336 | 66.667 | 17.54 | 0.00 | 45.56 | 4.45 |
1278 | 2246 | 2.743928 | GAGCAGCGGTGGAACTGG | 60.744 | 66.667 | 17.54 | 0.00 | 45.56 | 4.00 |
1282 | 2250 | 4.680237 | CGTGGAGCAGCGGTGGAA | 62.680 | 66.667 | 17.54 | 0.00 | 0.00 | 3.53 |
1350 | 2876 | 6.622833 | AAAAAGACTTGCATTTCCAATTGG | 57.377 | 33.333 | 19.08 | 19.08 | 0.00 | 3.16 |
1353 | 2879 | 8.962884 | AAACTAAAAAGACTTGCATTTCCAAT | 57.037 | 26.923 | 0.00 | 0.00 | 0.00 | 3.16 |
1379 | 2905 | 9.050601 | TGCATTTCCAATTAAAACCTTAAACTG | 57.949 | 29.630 | 0.00 | 0.00 | 30.87 | 3.16 |
1380 | 2906 | 9.620259 | TTGCATTTCCAATTAAAACCTTAAACT | 57.380 | 25.926 | 0.00 | 0.00 | 30.87 | 2.66 |
1381 | 2907 | 9.877137 | CTTGCATTTCCAATTAAAACCTTAAAC | 57.123 | 29.630 | 0.00 | 0.00 | 30.87 | 2.01 |
1382 | 2908 | 8.563732 | GCTTGCATTTCCAATTAAAACCTTAAA | 58.436 | 29.630 | 0.00 | 0.00 | 30.87 | 1.52 |
1383 | 2909 | 7.174080 | GGCTTGCATTTCCAATTAAAACCTTAA | 59.826 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1384 | 2910 | 6.652900 | GGCTTGCATTTCCAATTAAAACCTTA | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1385 | 2911 | 5.473162 | GGCTTGCATTTCCAATTAAAACCTT | 59.527 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1386 | 2912 | 5.003160 | GGCTTGCATTTCCAATTAAAACCT | 58.997 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
1387 | 2913 | 5.003160 | AGGCTTGCATTTCCAATTAAAACC | 58.997 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
1392 | 2918 | 5.480642 | TGAAAGGCTTGCATTTCCAATTA | 57.519 | 34.783 | 23.63 | 7.65 | 35.08 | 1.40 |
1394 | 2920 | 4.354893 | TTGAAAGGCTTGCATTTCCAAT | 57.645 | 36.364 | 23.63 | 0.00 | 35.08 | 3.16 |
1404 | 2938 | 5.105997 | CCCTCTACAGAAATTGAAAGGCTTG | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1413 | 2947 | 6.521151 | AATGAAAGCCCTCTACAGAAATTG | 57.479 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
1423 | 2957 | 3.516700 | CCATTTCCAAATGAAAGCCCTCT | 59.483 | 43.478 | 12.72 | 0.00 | 46.72 | 3.69 |
1424 | 2958 | 3.515104 | TCCATTTCCAAATGAAAGCCCTC | 59.485 | 43.478 | 12.72 | 0.00 | 46.72 | 4.30 |
1425 | 2959 | 3.519667 | TCCATTTCCAAATGAAAGCCCT | 58.480 | 40.909 | 12.72 | 0.00 | 46.72 | 5.19 |
1426 | 2960 | 3.979101 | TCCATTTCCAAATGAAAGCCC | 57.021 | 42.857 | 12.72 | 0.00 | 46.72 | 5.19 |
1427 | 2961 | 4.114794 | CGATCCATTTCCAAATGAAAGCC | 58.885 | 43.478 | 12.72 | 0.00 | 46.72 | 4.35 |
1428 | 2962 | 4.114794 | CCGATCCATTTCCAAATGAAAGC | 58.885 | 43.478 | 12.72 | 3.85 | 46.72 | 3.51 |
1429 | 2963 | 5.581126 | TCCGATCCATTTCCAAATGAAAG | 57.419 | 39.130 | 12.72 | 0.00 | 46.72 | 2.62 |
1430 | 2964 | 5.624281 | GCTTCCGATCCATTTCCAAATGAAA | 60.624 | 40.000 | 12.72 | 2.46 | 46.72 | 2.69 |
1431 | 2965 | 4.142182 | GCTTCCGATCCATTTCCAAATGAA | 60.142 | 41.667 | 12.72 | 0.00 | 46.72 | 2.57 |
1434 | 2968 | 2.695147 | GGCTTCCGATCCATTTCCAAAT | 59.305 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1447 | 2981 | 5.467035 | AATTGAAATTGAAAGGCTTCCGA | 57.533 | 34.783 | 0.00 | 0.00 | 0.00 | 4.55 |
1448 | 2982 | 5.466393 | ACAAATTGAAATTGAAAGGCTTCCG | 59.534 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1449 | 2983 | 6.866010 | ACAAATTGAAATTGAAAGGCTTCC | 57.134 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
1450 | 2984 | 8.183536 | ACAAACAAATTGAAATTGAAAGGCTTC | 58.816 | 29.630 | 0.00 | 0.00 | 41.85 | 3.86 |
1451 | 2985 | 8.054152 | ACAAACAAATTGAAATTGAAAGGCTT | 57.946 | 26.923 | 0.00 | 0.00 | 41.85 | 4.35 |
1453 | 2987 | 8.585436 | CAAACAAACAAATTGAAATTGAAAGGC | 58.415 | 29.630 | 0.00 | 0.00 | 41.85 | 4.35 |
1467 | 3001 | 8.917415 | ACAAACAAACAAACAAACAAACAAAT | 57.083 | 23.077 | 0.00 | 0.00 | 0.00 | 2.32 |
1468 | 3002 | 8.742554 | AACAAACAAACAAACAAACAAACAAA | 57.257 | 23.077 | 0.00 | 0.00 | 0.00 | 2.83 |
1471 | 3005 | 8.162906 | ACAAACAAACAAACAAACAAACAAAC | 57.837 | 26.923 | 0.00 | 0.00 | 0.00 | 2.93 |
1472 | 3006 | 8.742554 | AACAAACAAACAAACAAACAAACAAA | 57.257 | 23.077 | 0.00 | 0.00 | 0.00 | 2.83 |
1473 | 3007 | 8.638565 | CAAACAAACAAACAAACAAACAAACAA | 58.361 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
1474 | 3008 | 7.807907 | ACAAACAAACAAACAAACAAACAAACA | 59.192 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
1475 | 3009 | 8.162906 | ACAAACAAACAAACAAACAAACAAAC | 57.837 | 26.923 | 0.00 | 0.00 | 0.00 | 2.93 |
1476 | 3010 | 8.742554 | AACAAACAAACAAACAAACAAACAAA | 57.257 | 23.077 | 0.00 | 0.00 | 0.00 | 2.83 |
1477 | 3011 | 8.742554 | AAACAAACAAACAAACAAACAAACAA | 57.257 | 23.077 | 0.00 | 0.00 | 0.00 | 2.83 |
1479 | 3013 | 8.850452 | TGAAAACAAACAAACAAACAAACAAAC | 58.150 | 25.926 | 0.00 | 0.00 | 0.00 | 2.93 |
1480 | 3014 | 8.964420 | TGAAAACAAACAAACAAACAAACAAA | 57.036 | 23.077 | 0.00 | 0.00 | 0.00 | 2.83 |
1484 | 3018 | 9.787532 | TGAAATGAAAACAAACAAACAAACAAA | 57.212 | 22.222 | 0.00 | 0.00 | 0.00 | 2.83 |
1485 | 3019 | 9.443283 | CTGAAATGAAAACAAACAAACAAACAA | 57.557 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
1486 | 3020 | 8.072567 | CCTGAAATGAAAACAAACAAACAAACA | 58.927 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
1487 | 3021 | 8.073167 | ACCTGAAATGAAAACAAACAAACAAAC | 58.927 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
1488 | 3022 | 8.072567 | CACCTGAAATGAAAACAAACAAACAAA | 58.927 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
1490 | 3024 | 6.348050 | GCACCTGAAATGAAAACAAACAAACA | 60.348 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1523 | 3057 | 2.281484 | GGGCTGTCGGCTGTGAAA | 60.281 | 61.111 | 3.10 | 0.00 | 41.46 | 2.69 |
1533 | 3067 | 1.876664 | GGAAAAGAAGCGGGCTGTC | 59.123 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
1545 | 3079 | 4.631813 | CCTACTCATGGAAAGACGGAAAAG | 59.368 | 45.833 | 0.00 | 0.00 | 0.00 | 2.27 |
1639 | 3173 | 0.322187 | AATGGTTGGTGCCTCGGTAC | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1701 | 3235 | 0.317160 | TTGTCGTCTTGTCTGCCGAT | 59.683 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1772 | 3312 | 1.406887 | GGGAGCACCGTGACATTATGT | 60.407 | 52.381 | 1.65 | 0.00 | 36.97 | 2.29 |
1773 | 3313 | 1.299541 | GGGAGCACCGTGACATTATG | 58.700 | 55.000 | 1.65 | 0.00 | 36.97 | 1.90 |
1783 | 3323 | 1.153168 | CCAACTATGGGGAGCACCG | 60.153 | 63.158 | 0.00 | 0.00 | 43.51 | 4.94 |
1880 | 3422 | 5.781210 | TGTCAGAGACACAGATCCATATC | 57.219 | 43.478 | 0.00 | 0.00 | 37.67 | 1.63 |
1976 | 3518 | 2.031012 | TCCTTGTGCAGTGCCTCG | 59.969 | 61.111 | 13.72 | 0.00 | 0.00 | 4.63 |
1994 | 3536 | 2.038837 | GCCCAACACCCGACTAAGC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 3.09 |
2030 | 3572 | 1.838112 | TCCAAACATCATCCAGCACC | 58.162 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2085 | 3627 | 0.039798 | CCAGCATGTGAGCACAACAC | 60.040 | 55.000 | 7.46 | 0.63 | 45.41 | 3.32 |
2106 | 3648 | 8.818057 | GCTTGTCACAATTATAACACTACCTAG | 58.182 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2107 | 3649 | 7.767198 | GGCTTGTCACAATTATAACACTACCTA | 59.233 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2116 | 3658 | 3.181501 | GCTGCGGCTTGTCACAATTATAA | 60.182 | 43.478 | 11.21 | 0.00 | 35.22 | 0.98 |
2141 | 3683 | 2.223665 | GCCCATGATAGAAGCAACTTGC | 60.224 | 50.000 | 5.55 | 5.55 | 45.46 | 4.01 |
2225 | 3767 | 2.627699 | TGCTTCCCTTCCAAATGTGTTC | 59.372 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2264 | 3806 | 7.669722 | TGGAGAATACTTTTAGCCATTGAAACT | 59.330 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2279 | 3821 | 5.546499 | TCCCTTACACTTGTGGAGAATACTT | 59.454 | 40.000 | 5.72 | 0.00 | 0.00 | 2.24 |
2354 | 3896 | 4.770010 | TCCAAAACAGAAAACCACTGACTT | 59.230 | 37.500 | 0.00 | 0.00 | 38.55 | 3.01 |
2409 | 3954 | 0.035056 | AGTGCAGGTACAATCCCAGC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2476 | 4021 | 2.647299 | TGGGGAAAATAGCACAGAAGGA | 59.353 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2557 | 4102 | 2.205022 | TGGCCTCTTGTTTCTGATGG | 57.795 | 50.000 | 3.32 | 0.00 | 0.00 | 3.51 |
2766 | 4359 | 5.166398 | GTTGATCCTTGCAGAATTTCTTGG | 58.834 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2787 | 4380 | 5.720202 | TCGTGCTGTAATGAACTATCTGTT | 58.280 | 37.500 | 0.00 | 0.00 | 42.38 | 3.16 |
2868 | 4468 | 0.105039 | GGAGTCGGGGAGCTACAATG | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2872 | 4472 | 3.902086 | GCGGAGTCGGGGAGCTAC | 61.902 | 72.222 | 0.00 | 0.00 | 36.79 | 3.58 |
2885 | 4485 | 5.888724 | TCCTTTTGGATTAATAATGTGCGGA | 59.111 | 36.000 | 0.00 | 0.00 | 45.19 | 5.54 |
2923 | 4541 | 4.487714 | TGGCCATACTAAAAGGAGTCTG | 57.512 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2934 | 4570 | 6.266558 | ACACAAATTTTGACTTGGCCATACTA | 59.733 | 34.615 | 6.09 | 0.00 | 0.00 | 1.82 |
2955 | 4591 | 3.006430 | TCTTCAATGCTCGTAAGGACACA | 59.994 | 43.478 | 0.00 | 0.00 | 38.47 | 3.72 |
3009 | 4645 | 6.109359 | ACAGTCTAAATAGCGAAGATGCTTT | 58.891 | 36.000 | 0.00 | 0.00 | 44.46 | 3.51 |
3057 | 4693 | 1.362224 | ACATGGTAGTGGCTTCAGGT | 58.638 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3132 | 4768 | 7.892771 | AGACTACTCATATATCTCATGCCTTCA | 59.107 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
3270 | 4906 | 3.829886 | TTGAGTTGATCAATTCCACGC | 57.170 | 42.857 | 23.53 | 9.37 | 43.09 | 5.34 |
3309 | 4945 | 0.519077 | GCTCAGTCAAAGAAAGGGCG | 59.481 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3369 | 5005 | 7.641411 | CGTTTCAAATTATGCTTGGTAGAGATG | 59.359 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
3372 | 5008 | 7.072177 | TCGTTTCAAATTATGCTTGGTAGAG | 57.928 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3440 | 5082 | 6.868339 | TGCATCATTACGTACTTCATATCCAG | 59.132 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
3455 | 5097 | 9.160496 | CCTCTAATATTCCTTCTGCATCATTAC | 57.840 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3460 | 5102 | 4.940654 | GGCCTCTAATATTCCTTCTGCATC | 59.059 | 45.833 | 0.00 | 0.00 | 0.00 | 3.91 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.