Multiple sequence alignment - TraesCS7B01G502300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G502300 chr7B 100.000 7092 0 0 1 7092 750612875 750605784 0.000000e+00 13097.0
1 TraesCS7B01G502300 chr7B 98.260 4139 63 5 1329 5459 750409831 750413968 0.000000e+00 7236.0
2 TraesCS7B01G502300 chr7B 96.185 865 29 2 69 932 750408541 750409402 0.000000e+00 1411.0
3 TraesCS7B01G502300 chr7B 98.273 521 9 0 5604 6124 750413966 750414486 0.000000e+00 913.0
4 TraesCS7B01G502300 chr7B 92.915 494 23 7 6601 7092 750429564 750430047 0.000000e+00 708.0
5 TraesCS7B01G502300 chr7B 99.178 365 3 0 969 1333 750409402 750409766 0.000000e+00 658.0
6 TraesCS7B01G502300 chr7B 86.140 570 50 13 6548 7092 750442020 750442585 7.920000e-164 588.0
7 TraesCS7B01G502300 chr7B 92.582 337 18 4 6757 7092 750415415 750415745 1.790000e-130 477.0
8 TraesCS7B01G502300 chr7B 85.055 455 48 14 6431 6880 750211056 750211495 5.050000e-121 446.0
9 TraesCS7B01G502300 chr7B 76.756 598 86 27 6128 6703 750414846 750415412 1.160000e-72 285.0
10 TraesCS7B01G502300 chr7B 96.386 83 3 0 1 83 750408401 750408483 3.450000e-28 137.0
11 TraesCS7B01G502300 chr7B 80.374 107 20 1 450 555 200893347 200893453 5.900000e-11 80.5
12 TraesCS7B01G502300 chr7A 91.858 479 30 4 6615 7092 732801747 732801277 0.000000e+00 660.0
13 TraesCS7B01G502300 chr7A 88.978 499 51 3 5632 6126 732808253 732807755 1.310000e-171 614.0
14 TraesCS7B01G502300 chr7A 78.444 900 180 14 4182 5074 62728737 62727845 6.170000e-160 575.0
15 TraesCS7B01G502300 chr7A 89.031 392 27 8 6714 7092 732862923 732863311 8.330000e-129 472.0
16 TraesCS7B01G502300 chr7A 81.853 259 18 10 6719 6966 733029741 733029501 2.610000e-44 191.0
17 TraesCS7B01G502300 chr7A 91.429 70 4 1 7023 7092 732807064 732806997 2.110000e-15 95.3
18 TraesCS7B01G502300 chr7D 88.672 512 29 12 6600 7092 633804131 633804632 1.320000e-166 597.0
19 TraesCS7B01G502300 chr7D 84.960 379 23 9 6719 7081 633674379 633674739 3.150000e-93 353.0
20 TraesCS7B01G502300 chr7D 90.686 204 16 1 6871 7074 633803507 633803707 1.170000e-67 268.0
21 TraesCS7B01G502300 chr3B 77.092 956 196 14 4149 5088 814807834 814806886 1.350000e-146 531.0
22 TraesCS7B01G502300 chr3B 81.043 211 40 0 2959 3169 814745577 814745367 1.220000e-37 169.0
23 TraesCS7B01G502300 chr4A 77.258 897 196 8 4182 5074 674616436 674615544 2.930000e-143 520.0
24 TraesCS7B01G502300 chr4A 90.566 53 5 0 2272 2324 477033331 477033279 3.550000e-08 71.3
25 TraesCS7B01G502300 chr4A 78.448 116 17 2 2269 2384 60654288 60654181 1.280000e-07 69.4
26 TraesCS7B01G502300 chr3D 86.612 366 23 11 6600 6949 15609173 15609528 1.440000e-101 381.0
27 TraesCS7B01G502300 chr1D 75.488 461 97 14 2926 3373 494939807 494940264 2.000000e-50 211.0
28 TraesCS7B01G502300 chr1D 78.358 268 48 5 1371 1636 9576953 9577212 1.580000e-36 165.0
29 TraesCS7B01G502300 chr1D 72.177 496 106 21 5400 5885 9087049 9086576 9.660000e-24 122.0
30 TraesCS7B01G502300 chr1D 82.474 97 15 2 460 555 305220032 305220127 4.560000e-12 84.2
31 TraesCS7B01G502300 chr1D 92.857 42 3 0 2283 2324 373653605 373653646 2.140000e-05 62.1
32 TraesCS7B01G502300 chr1D 92.857 42 1 2 82 122 250073556 250073596 7.680000e-05 60.2
33 TraesCS7B01G502300 chr6B 87.421 159 20 0 1161 1319 68394672 68394514 4.370000e-42 183.0
34 TraesCS7B01G502300 chr6B 80.645 155 22 7 3041 3191 717902743 717902593 5.810000e-21 113.0
35 TraesCS7B01G502300 chrUn 78.626 262 46 4 1380 1639 2379720 2379467 1.580000e-36 165.0
36 TraesCS7B01G502300 chr6D 80.392 153 26 4 3041 3191 472753489 472753339 5.810000e-21 113.0
37 TraesCS7B01G502300 chr1A 82.203 118 19 2 439 555 309765072 309764956 4.530000e-17 100.0
38 TraesCS7B01G502300 chr1A 84.146 82 10 3 444 525 257363349 257363427 7.630000e-10 76.8
39 TraesCS7B01G502300 chr1A 87.879 66 7 1 439 504 518467921 518467985 7.630000e-10 76.8
40 TraesCS7B01G502300 chr5B 77.852 149 26 5 3035 3183 25332739 25332598 1.270000e-12 86.1
41 TraesCS7B01G502300 chr5B 91.667 60 5 0 2369 2428 38829214 38829155 4.560000e-12 84.2
42 TraesCS7B01G502300 chr5B 78.814 118 24 1 5343 5459 81474592 81474709 2.120000e-10 78.7
43 TraesCS7B01G502300 chr2D 86.486 74 10 0 471 544 34000386 34000313 1.640000e-11 82.4
44 TraesCS7B01G502300 chr2D 96.875 32 1 0 2284 2315 3759480 3759449 4.000000e-03 54.7
45 TraesCS7B01G502300 chr5D 78.632 117 24 1 5343 5458 72544708 72544592 7.630000e-10 76.8
46 TraesCS7B01G502300 chr2B 80.198 101 16 4 450 549 33581030 33581127 9.870000e-09 73.1
47 TraesCS7B01G502300 chr1B 82.895 76 10 3 472 546 484135496 484135423 1.650000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G502300 chr7B 750605784 750612875 7091 True 13097.000000 13097 100.000000 1 7092 1 chr7B.!!$R1 7091
1 TraesCS7B01G502300 chr7B 750408401 750415745 7344 False 1588.142857 7236 93.945714 1 7092 7 chr7B.!!$F5 7091
2 TraesCS7B01G502300 chr7B 750442020 750442585 565 False 588.000000 588 86.140000 6548 7092 1 chr7B.!!$F4 544
3 TraesCS7B01G502300 chr7A 62727845 62728737 892 True 575.000000 575 78.444000 4182 5074 1 chr7A.!!$R1 892
4 TraesCS7B01G502300 chr7A 732806997 732808253 1256 True 354.650000 614 90.203500 5632 7092 2 chr7A.!!$R4 1460
5 TraesCS7B01G502300 chr7D 633803507 633804632 1125 False 432.500000 597 89.679000 6600 7092 2 chr7D.!!$F2 492
6 TraesCS7B01G502300 chr3B 814806886 814807834 948 True 531.000000 531 77.092000 4149 5088 1 chr3B.!!$R2 939
7 TraesCS7B01G502300 chr4A 674615544 674616436 892 True 520.000000 520 77.258000 4182 5074 1 chr4A.!!$R3 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 263 0.038618 GGGTCAAAATTGGTCCACGC 60.039 55.000 0.00 0.0 0.00 5.34 F
945 1019 0.108585 ATCGGATGCGCAATTACCCT 59.891 50.000 17.11 0.0 0.00 4.34 F
1357 1500 0.250553 TCCAGGATTTTGCCGTTCGT 60.251 50.000 0.00 0.0 0.00 3.85 F
2052 2195 0.397941 CACAACAAGAGAGGGAGCCA 59.602 55.000 0.00 0.0 0.00 4.75 F
2222 2365 2.032924 GGGTGTTCTTCTGGTTTGTTCG 59.967 50.000 0.00 0.0 0.00 3.95 F
3286 3432 3.282021 ACATACATCTGCTGCCGAATTT 58.718 40.909 0.00 0.0 0.00 1.82 F
4281 4440 3.140325 TGGCAAACCAACCAAAAACAA 57.860 38.095 0.00 0.0 45.37 2.83 F
5564 5724 0.039618 ATGTTTGGATGGAACGGCCT 59.960 50.000 0.00 0.0 37.63 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1482 0.168128 GACGAACGGCAAAATCCTGG 59.832 55.000 0.00 0.0 0.00 4.45 R
2919 3064 0.577269 GTGTCGATGCGAGTAATGCC 59.423 55.000 0.00 0.0 36.23 4.40 R
2943 3088 1.321474 TCCTCCAAAGCAGCAAACAG 58.679 50.000 0.00 0.0 0.00 3.16 R
3307 3453 1.744320 AACTTCCCGCTGTTTTGGGC 61.744 55.000 0.00 0.0 45.60 5.36 R
3427 3573 9.561069 GCTTATACCTTCCTCATCAAAAGAATA 57.439 33.333 0.00 0.0 0.00 1.75 R
5039 5198 0.466922 GGATGATGGTCCTTGGCAGG 60.467 60.000 0.00 0.0 42.50 4.85 R
5899 6059 0.036952 CGATGCACTGTGAAGGGTCT 60.037 55.000 12.86 0.0 0.00 3.85 R
6704 7353 0.035152 TGTGTGGATGGGAGATGTGC 60.035 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.851098 ACATTGAGCTCCTAACTCGAAC 58.149 45.455 12.15 0.00 36.94 3.95
189 262 1.269448 CAGGGTCAAAATTGGTCCACG 59.731 52.381 0.00 0.00 0.00 4.94
190 263 0.038618 GGGTCAAAATTGGTCCACGC 60.039 55.000 0.00 0.00 0.00 5.34
240 313 2.100631 GTGGCCGTTGTCGATGAGG 61.101 63.158 0.00 0.00 39.71 3.86
295 368 0.675837 TCGAGGTGGTCTGGTAGACG 60.676 60.000 3.17 0.00 45.96 4.18
364 437 3.338250 TGTGAGGACCATGGGGGC 61.338 66.667 18.09 4.76 43.93 5.80
385 458 3.854669 CTAGGGGCTGTCTGGCGG 61.855 72.222 0.00 0.00 42.84 6.13
391 464 3.075005 GCTGTCTGGCGGAGGGTA 61.075 66.667 0.00 0.00 0.00 3.69
488 561 1.259316 GCCGTGTTCGCATGAATTTC 58.741 50.000 0.00 0.00 36.29 2.17
531 604 4.141937 TGTTTAGAAGGTATGCGAGCATCT 60.142 41.667 14.35 8.45 37.39 2.90
594 667 3.321111 TCCTATATCCTTGTCTGCGAACC 59.679 47.826 0.00 0.00 0.00 3.62
674 747 8.486210 TCTATATGCTTAGACACAAGGACAAAT 58.514 33.333 0.00 0.00 0.00 2.32
758 832 5.441709 TTTGATATACAGGCGATCGTACA 57.558 39.130 17.81 0.00 0.00 2.90
771 845 2.442212 TCGTACAATGAAACTGCCGA 57.558 45.000 0.00 0.00 0.00 5.54
874 948 1.539388 ACAGCTCACGAGTCTCTCTTG 59.461 52.381 0.00 0.00 32.13 3.02
915 989 3.120086 AAGCCTGGCAGGTTGACGT 62.120 57.895 32.80 13.00 37.80 4.34
933 1007 3.770765 CGTTATCGTTGGAATCGGATG 57.229 47.619 0.00 0.00 0.00 3.51
934 1008 2.096909 CGTTATCGTTGGAATCGGATGC 60.097 50.000 0.00 0.00 0.00 3.91
935 1009 1.778334 TATCGTTGGAATCGGATGCG 58.222 50.000 0.00 0.00 0.00 4.73
936 1010 1.498865 ATCGTTGGAATCGGATGCGC 61.499 55.000 0.00 0.00 0.00 6.09
937 1011 2.460275 CGTTGGAATCGGATGCGCA 61.460 57.895 14.96 14.96 0.00 6.09
938 1012 1.800032 GTTGGAATCGGATGCGCAA 59.200 52.632 17.11 0.00 0.00 4.85
939 1013 0.381801 GTTGGAATCGGATGCGCAAT 59.618 50.000 17.11 0.00 0.00 3.56
940 1014 1.102154 TTGGAATCGGATGCGCAATT 58.898 45.000 17.11 9.91 0.00 2.32
941 1015 1.960417 TGGAATCGGATGCGCAATTA 58.040 45.000 17.11 0.00 0.00 1.40
942 1016 1.601903 TGGAATCGGATGCGCAATTAC 59.398 47.619 17.11 11.31 0.00 1.89
943 1017 1.069227 GGAATCGGATGCGCAATTACC 60.069 52.381 17.11 14.80 0.00 2.85
944 1018 0.951558 AATCGGATGCGCAATTACCC 59.048 50.000 17.11 10.05 0.00 3.69
945 1019 0.108585 ATCGGATGCGCAATTACCCT 59.891 50.000 17.11 0.00 0.00 4.34
946 1020 0.813610 TCGGATGCGCAATTACCCTG 60.814 55.000 17.11 5.01 0.00 4.45
947 1021 1.785041 CGGATGCGCAATTACCCTGG 61.785 60.000 17.11 0.02 0.00 4.45
948 1022 1.455383 GGATGCGCAATTACCCTGGG 61.455 60.000 17.11 12.28 0.00 4.45
952 1026 4.329831 GCAATTACCCTGGGCGAA 57.670 55.556 14.08 7.97 0.00 4.70
953 1027 2.106844 GCAATTACCCTGGGCGAAG 58.893 57.895 14.08 0.17 0.00 3.79
954 1028 0.393808 GCAATTACCCTGGGCGAAGA 60.394 55.000 14.08 0.00 0.00 2.87
955 1029 1.668419 CAATTACCCTGGGCGAAGAG 58.332 55.000 14.08 0.67 0.00 2.85
966 1040 3.816524 CGAAGAGCCGGCTCGTCT 61.817 66.667 46.29 36.10 45.11 4.18
967 1041 2.470362 CGAAGAGCCGGCTCGTCTA 61.470 63.158 46.29 0.00 45.11 2.59
968 1042 1.807886 GAAGAGCCGGCTCGTCTAA 59.192 57.895 45.18 0.00 46.90 2.10
1333 1407 4.260609 ATGGCCGCGCATGAGGAT 62.261 61.111 8.75 0.00 37.19 3.24
1351 1494 3.481453 GGATACTCTCCAGGATTTTGCC 58.519 50.000 0.00 0.00 44.26 4.52
1354 1497 1.073923 ACTCTCCAGGATTTTGCCGTT 59.926 47.619 0.00 0.00 0.00 4.44
1356 1499 0.447801 CTCCAGGATTTTGCCGTTCG 59.552 55.000 0.00 0.00 0.00 3.95
1357 1500 0.250553 TCCAGGATTTTGCCGTTCGT 60.251 50.000 0.00 0.00 0.00 3.85
1363 1506 0.872388 ATTTTGCCGTTCGTCTGGAC 59.128 50.000 0.00 0.00 0.00 4.02
1373 1516 2.359230 GTCTGGACAGGCACAGGC 60.359 66.667 0.00 0.00 35.47 4.85
1446 1589 1.401199 GCAGATGAAGGAGCTCAAAGC 59.599 52.381 17.19 3.88 42.84 3.51
1465 1608 1.772182 CCGATGTCGAGGATGTTAGC 58.228 55.000 3.62 0.00 43.02 3.09
1479 1622 1.176527 GTTAGCCAAAGGAGCATGCA 58.823 50.000 21.98 0.00 0.00 3.96
1480 1623 1.135286 GTTAGCCAAAGGAGCATGCAC 60.135 52.381 21.98 14.31 0.00 4.57
1612 1755 5.674820 GCGGGAGAAATCAAAAGTGAATCTC 60.675 44.000 11.53 11.53 43.45 2.75
1637 1780 1.734465 GATTGCTCAACAAGAGGGACG 59.266 52.381 0.00 0.00 44.86 4.79
1746 1889 5.464722 CCTATGATCATTTGAAGAGACACGG 59.535 44.000 14.65 0.00 0.00 4.94
1754 1897 1.939934 TGAAGAGACACGGCAAGTTTG 59.060 47.619 0.00 0.00 0.00 2.93
1800 1943 2.023673 GTCGGCATTCAATCCAATGGA 58.976 47.619 3.67 3.67 34.75 3.41
1902 2045 2.702478 CCCAGATACTGAGGAGAATGCA 59.298 50.000 0.00 0.00 32.44 3.96
1904 2047 3.640498 CCAGATACTGAGGAGAATGCAGA 59.360 47.826 0.00 0.00 32.44 4.26
1999 2142 3.181486 TGTTGACGGATGTCTCTAGCATC 60.181 47.826 1.37 1.37 45.70 3.91
2000 2143 1.604278 TGACGGATGTCTCTAGCATCG 59.396 52.381 3.62 0.00 45.70 3.84
2022 2165 5.642063 TCGAACAGTGGGATCAGATAAAAAC 59.358 40.000 0.00 0.00 0.00 2.43
2052 2195 0.397941 CACAACAAGAGAGGGAGCCA 59.602 55.000 0.00 0.00 0.00 4.75
2222 2365 2.032924 GGGTGTTCTTCTGGTTTGTTCG 59.967 50.000 0.00 0.00 0.00 3.95
2292 2435 6.652205 AATACTCCCTCTGTCCCAAATTAA 57.348 37.500 0.00 0.00 0.00 1.40
2352 2495 6.696583 TGTATCTAACAGAAAAACGTGTCGAA 59.303 34.615 0.00 0.00 33.01 3.71
2388 2531 8.858003 ATCTAGATGTATCTAACACAAACACG 57.142 34.615 3.89 0.00 42.09 4.49
2402 2545 6.319229 CACAAACACGTGTCTAGATACATC 57.681 41.667 23.61 0.00 32.00 3.06
2700 2845 5.354234 AGTTAATTATGCCTTCCGTTGTCTG 59.646 40.000 0.00 0.00 0.00 3.51
2919 3064 4.321452 CCAACAACTCCATGGACAGAAATG 60.321 45.833 11.44 1.32 36.27 2.32
3047 3192 5.013079 ACATGGACAAGAACTTCAGGTGATA 59.987 40.000 0.00 0.00 0.00 2.15
3261 3406 7.279615 TGGAAAGAAGTACTTGATTGTTCTCA 58.720 34.615 14.14 6.62 38.98 3.27
3286 3432 3.282021 ACATACATCTGCTGCCGAATTT 58.718 40.909 0.00 0.00 0.00 1.82
3427 3573 4.202398 ACCCTGAATTATGATGACGCTCAT 60.202 41.667 0.91 0.91 40.34 2.90
3613 3759 4.752101 AGAACTAAGTGACTGCATGTTGAC 59.248 41.667 0.00 0.00 0.00 3.18
3636 3782 8.511321 TGACGCTGATAAATAAAAAGTGACATT 58.489 29.630 0.00 0.00 0.00 2.71
3833 3983 6.084749 AGAATTCCTGGCCTCTTTTCTAAT 57.915 37.500 3.32 0.00 0.00 1.73
4281 4440 3.140325 TGGCAAACCAACCAAAAACAA 57.860 38.095 0.00 0.00 45.37 2.83
4544 4703 5.474578 TGGCTAGTAGCTATTTCATGGAG 57.525 43.478 21.20 0.00 41.99 3.86
4568 4727 8.548880 AGTTTATAAGCAGAAGTATGGTCCTA 57.451 34.615 1.97 0.00 0.00 2.94
5395 5555 2.285743 AAGGGGGAGGCCACTCTC 60.286 66.667 5.01 0.00 43.84 3.20
5459 5619 2.033299 AGTGGCATCAACAAGACAAACG 59.967 45.455 0.00 0.00 0.00 3.60
5460 5620 1.336440 TGGCATCAACAAGACAAACGG 59.664 47.619 0.00 0.00 0.00 4.44
5461 5621 1.408422 GCATCAACAAGACAAACGGC 58.592 50.000 0.00 0.00 0.00 5.68
5462 5622 1.930371 GCATCAACAAGACAAACGGCC 60.930 52.381 0.00 0.00 0.00 6.13
5463 5623 1.336440 CATCAACAAGACAAACGGCCA 59.664 47.619 2.24 0.00 0.00 5.36
5464 5624 1.464734 TCAACAAGACAAACGGCCAA 58.535 45.000 2.24 0.00 0.00 4.52
5465 5625 1.819288 TCAACAAGACAAACGGCCAAA 59.181 42.857 2.24 0.00 0.00 3.28
5466 5626 2.428890 TCAACAAGACAAACGGCCAAAT 59.571 40.909 2.24 0.00 0.00 2.32
5467 5627 2.507339 ACAAGACAAACGGCCAAATG 57.493 45.000 2.24 0.00 0.00 2.32
5468 5628 1.754226 ACAAGACAAACGGCCAAATGT 59.246 42.857 2.24 3.37 0.00 2.71
5469 5629 2.167487 ACAAGACAAACGGCCAAATGTT 59.833 40.909 2.24 0.00 0.00 2.71
5470 5630 3.381908 ACAAGACAAACGGCCAAATGTTA 59.618 39.130 2.24 0.00 0.00 2.41
5471 5631 4.038642 ACAAGACAAACGGCCAAATGTTAT 59.961 37.500 2.24 0.00 0.00 1.89
5472 5632 4.173036 AGACAAACGGCCAAATGTTATG 57.827 40.909 2.24 3.20 0.00 1.90
5473 5633 3.572255 AGACAAACGGCCAAATGTTATGT 59.428 39.130 2.24 6.22 0.00 2.29
5474 5634 4.038642 AGACAAACGGCCAAATGTTATGTT 59.961 37.500 2.24 0.00 0.00 2.71
5475 5635 4.303282 ACAAACGGCCAAATGTTATGTTC 58.697 39.130 2.24 0.00 0.00 3.18
5476 5636 4.202161 ACAAACGGCCAAATGTTATGTTCA 60.202 37.500 2.24 0.00 0.00 3.18
5477 5637 3.848272 ACGGCCAAATGTTATGTTCAG 57.152 42.857 2.24 0.00 0.00 3.02
5478 5638 2.094752 ACGGCCAAATGTTATGTTCAGC 60.095 45.455 2.24 0.00 0.00 4.26
5479 5639 2.094803 CGGCCAAATGTTATGTTCAGCA 60.095 45.455 2.24 0.00 0.00 4.41
5480 5640 3.514645 GGCCAAATGTTATGTTCAGCAG 58.485 45.455 0.00 0.00 0.00 4.24
5481 5641 3.056607 GGCCAAATGTTATGTTCAGCAGT 60.057 43.478 0.00 0.00 0.00 4.40
5482 5642 4.559153 GCCAAATGTTATGTTCAGCAGTT 58.441 39.130 0.00 0.00 0.00 3.16
5483 5643 4.386652 GCCAAATGTTATGTTCAGCAGTTG 59.613 41.667 0.00 0.00 35.39 3.16
5484 5644 4.386652 CCAAATGTTATGTTCAGCAGTTGC 59.613 41.667 0.00 0.00 34.63 4.17
5501 5661 4.504916 CTGGTCTCAGCCGCCTCG 62.505 72.222 0.00 0.00 33.86 4.63
5503 5663 4.200283 GGTCTCAGCCGCCTCGAG 62.200 72.222 5.13 5.13 0.00 4.04
5504 5664 3.444805 GTCTCAGCCGCCTCGAGT 61.445 66.667 12.31 0.00 0.00 4.18
5505 5665 3.134792 TCTCAGCCGCCTCGAGTC 61.135 66.667 12.31 0.00 0.00 3.36
5506 5666 3.443925 CTCAGCCGCCTCGAGTCA 61.444 66.667 12.31 0.00 0.00 3.41
5507 5667 2.755876 TCAGCCGCCTCGAGTCAT 60.756 61.111 12.31 0.00 0.00 3.06
5508 5668 2.185350 CAGCCGCCTCGAGTCATT 59.815 61.111 12.31 0.00 0.00 2.57
5509 5669 2.169789 CAGCCGCCTCGAGTCATTG 61.170 63.158 12.31 0.00 0.00 2.82
5510 5670 2.184322 GCCGCCTCGAGTCATTGA 59.816 61.111 12.31 0.00 0.00 2.57
5511 5671 2.167861 GCCGCCTCGAGTCATTGAC 61.168 63.158 12.31 8.82 0.00 3.18
5512 5672 1.874019 CCGCCTCGAGTCATTGACG 60.874 63.158 12.31 0.89 37.67 4.35
5513 5673 1.136774 CGCCTCGAGTCATTGACGA 59.863 57.895 12.31 5.31 37.67 4.20
5514 5674 0.248661 CGCCTCGAGTCATTGACGAT 60.249 55.000 12.31 0.00 37.67 3.73
5515 5675 1.203928 GCCTCGAGTCATTGACGATG 58.796 55.000 12.31 5.56 37.67 3.84
5516 5676 1.202302 GCCTCGAGTCATTGACGATGA 60.202 52.381 12.31 0.84 42.42 2.92
5517 5677 2.735444 GCCTCGAGTCATTGACGATGAA 60.735 50.000 12.31 0.00 45.96 2.57
5518 5678 3.111838 CCTCGAGTCATTGACGATGAAG 58.888 50.000 12.31 1.57 45.96 3.02
5519 5679 2.530177 TCGAGTCATTGACGATGAAGC 58.470 47.619 11.01 2.09 45.96 3.86
5520 5680 1.590238 CGAGTCATTGACGATGAAGCC 59.410 52.381 11.01 0.00 45.96 4.35
5521 5681 2.621338 GAGTCATTGACGATGAAGCCA 58.379 47.619 11.01 0.00 45.96 4.75
5522 5682 2.349886 GAGTCATTGACGATGAAGCCAC 59.650 50.000 11.01 0.00 45.96 5.01
5523 5683 2.076100 GTCATTGACGATGAAGCCACA 58.924 47.619 6.96 0.00 45.96 4.17
5524 5684 2.483877 GTCATTGACGATGAAGCCACAA 59.516 45.455 6.96 0.00 45.96 3.33
5525 5685 3.058293 GTCATTGACGATGAAGCCACAAA 60.058 43.478 6.96 0.00 45.96 2.83
5526 5686 3.567585 TCATTGACGATGAAGCCACAAAA 59.432 39.130 2.65 0.00 41.73 2.44
5527 5687 3.624326 TTGACGATGAAGCCACAAAAG 57.376 42.857 0.00 0.00 0.00 2.27
5528 5688 1.879380 TGACGATGAAGCCACAAAAGG 59.121 47.619 0.00 0.00 0.00 3.11
5529 5689 2.151202 GACGATGAAGCCACAAAAGGA 58.849 47.619 0.00 0.00 0.00 3.36
5530 5690 2.552315 GACGATGAAGCCACAAAAGGAA 59.448 45.455 0.00 0.00 0.00 3.36
5531 5691 3.157087 ACGATGAAGCCACAAAAGGAAT 58.843 40.909 0.00 0.00 0.00 3.01
5532 5692 3.191371 ACGATGAAGCCACAAAAGGAATC 59.809 43.478 0.00 0.00 0.00 2.52
5533 5693 3.191162 CGATGAAGCCACAAAAGGAATCA 59.809 43.478 0.00 0.00 31.98 2.57
5534 5694 4.673580 CGATGAAGCCACAAAAGGAATCAG 60.674 45.833 0.00 0.00 31.28 2.90
5535 5695 2.892852 TGAAGCCACAAAAGGAATCAGG 59.107 45.455 0.00 0.00 0.00 3.86
5536 5696 2.683211 AGCCACAAAAGGAATCAGGT 57.317 45.000 0.00 0.00 0.00 4.00
5537 5697 2.519013 AGCCACAAAAGGAATCAGGTC 58.481 47.619 0.00 0.00 0.00 3.85
5538 5698 2.108952 AGCCACAAAAGGAATCAGGTCT 59.891 45.455 0.00 0.00 0.00 3.85
5539 5699 2.229784 GCCACAAAAGGAATCAGGTCTG 59.770 50.000 0.00 0.00 0.00 3.51
5540 5700 3.490348 CCACAAAAGGAATCAGGTCTGT 58.510 45.455 0.00 0.00 0.00 3.41
5541 5701 3.254166 CCACAAAAGGAATCAGGTCTGTG 59.746 47.826 0.00 0.00 34.18 3.66
5542 5702 3.885297 CACAAAAGGAATCAGGTCTGTGT 59.115 43.478 0.00 0.00 0.00 3.72
5543 5703 3.885297 ACAAAAGGAATCAGGTCTGTGTG 59.115 43.478 0.00 0.00 0.00 3.82
5544 5704 2.867109 AAGGAATCAGGTCTGTGTGG 57.133 50.000 0.00 0.00 0.00 4.17
5545 5705 2.030027 AGGAATCAGGTCTGTGTGGA 57.970 50.000 0.00 0.00 0.00 4.02
5546 5706 2.555664 AGGAATCAGGTCTGTGTGGAT 58.444 47.619 0.00 0.00 0.00 3.41
5547 5707 2.238144 AGGAATCAGGTCTGTGTGGATG 59.762 50.000 0.00 0.00 0.00 3.51
5548 5708 2.026822 GGAATCAGGTCTGTGTGGATGT 60.027 50.000 0.00 0.00 0.00 3.06
5549 5709 3.560025 GGAATCAGGTCTGTGTGGATGTT 60.560 47.826 0.00 0.00 0.00 2.71
5550 5710 3.795688 ATCAGGTCTGTGTGGATGTTT 57.204 42.857 0.00 0.00 0.00 2.83
5551 5711 2.849942 TCAGGTCTGTGTGGATGTTTG 58.150 47.619 0.00 0.00 0.00 2.93
5552 5712 1.881973 CAGGTCTGTGTGGATGTTTGG 59.118 52.381 0.00 0.00 0.00 3.28
5553 5713 1.774254 AGGTCTGTGTGGATGTTTGGA 59.226 47.619 0.00 0.00 0.00 3.53
5554 5714 2.376518 AGGTCTGTGTGGATGTTTGGAT 59.623 45.455 0.00 0.00 0.00 3.41
5555 5715 2.489329 GGTCTGTGTGGATGTTTGGATG 59.511 50.000 0.00 0.00 0.00 3.51
5556 5716 2.489329 GTCTGTGTGGATGTTTGGATGG 59.511 50.000 0.00 0.00 0.00 3.51
5557 5717 2.374839 TCTGTGTGGATGTTTGGATGGA 59.625 45.455 0.00 0.00 0.00 3.41
5558 5718 3.156293 CTGTGTGGATGTTTGGATGGAA 58.844 45.455 0.00 0.00 0.00 3.53
5559 5719 2.890311 TGTGTGGATGTTTGGATGGAAC 59.110 45.455 0.00 0.00 0.00 3.62
5560 5720 2.095263 GTGTGGATGTTTGGATGGAACG 60.095 50.000 0.00 0.00 0.00 3.95
5561 5721 1.472480 GTGGATGTTTGGATGGAACGG 59.528 52.381 0.00 0.00 0.00 4.44
5562 5722 0.455815 GGATGTTTGGATGGAACGGC 59.544 55.000 0.00 0.00 0.00 5.68
5563 5723 0.455815 GATGTTTGGATGGAACGGCC 59.544 55.000 0.00 0.00 37.10 6.13
5564 5724 0.039618 ATGTTTGGATGGAACGGCCT 59.960 50.000 0.00 0.00 37.63 5.19
5565 5725 0.608035 TGTTTGGATGGAACGGCCTC 60.608 55.000 0.00 0.00 37.63 4.70
5566 5726 0.608035 GTTTGGATGGAACGGCCTCA 60.608 55.000 0.00 0.00 37.63 3.86
5567 5727 0.608035 TTTGGATGGAACGGCCTCAC 60.608 55.000 0.00 0.00 37.63 3.51
5568 5728 2.124695 GGATGGAACGGCCTCACC 60.125 66.667 0.00 1.16 37.63 4.02
5569 5729 2.670148 GGATGGAACGGCCTCACCT 61.670 63.158 0.00 0.00 37.63 4.00
5570 5730 1.153349 GATGGAACGGCCTCACCTC 60.153 63.158 0.00 0.00 37.63 3.85
5571 5731 2.595009 GATGGAACGGCCTCACCTCC 62.595 65.000 0.00 0.00 37.63 4.30
5572 5732 3.319198 GGAACGGCCTCACCTCCA 61.319 66.667 0.00 0.00 33.70 3.86
5573 5733 2.747686 GAACGGCCTCACCTCCAA 59.252 61.111 0.00 0.00 35.61 3.53
5574 5734 1.072505 GAACGGCCTCACCTCCAAA 59.927 57.895 0.00 0.00 35.61 3.28
5575 5735 0.536460 GAACGGCCTCACCTCCAAAA 60.536 55.000 0.00 0.00 35.61 2.44
5576 5736 0.106419 AACGGCCTCACCTCCAAAAA 60.106 50.000 0.00 0.00 35.61 1.94
5594 5754 2.481289 AAACCTAGAGTGCCTCAAGC 57.519 50.000 0.00 0.00 44.14 4.01
5595 5755 1.650528 AACCTAGAGTGCCTCAAGCT 58.349 50.000 0.00 0.00 44.23 3.74
5596 5756 0.901124 ACCTAGAGTGCCTCAAGCTG 59.099 55.000 0.00 0.00 44.23 4.24
5597 5757 1.189752 CCTAGAGTGCCTCAAGCTGA 58.810 55.000 0.00 0.00 44.23 4.26
5598 5758 1.761784 CCTAGAGTGCCTCAAGCTGAT 59.238 52.381 0.00 0.00 44.23 2.90
5599 5759 2.224018 CCTAGAGTGCCTCAAGCTGATC 60.224 54.545 0.00 0.00 44.23 2.92
5600 5760 0.175302 AGAGTGCCTCAAGCTGATCG 59.825 55.000 0.00 0.00 44.23 3.69
5601 5761 0.809241 GAGTGCCTCAAGCTGATCGG 60.809 60.000 0.00 0.00 44.23 4.18
5602 5762 2.124983 TGCCTCAAGCTGATCGGC 60.125 61.111 19.30 19.30 44.23 5.54
5603 5763 2.124983 GCCTCAAGCTGATCGGCA 60.125 61.111 27.81 7.08 37.57 5.69
5604 5764 1.746615 GCCTCAAGCTGATCGGCAA 60.747 57.895 27.81 12.05 37.57 4.52
5605 5765 1.986575 GCCTCAAGCTGATCGGCAAC 61.987 60.000 27.81 6.96 37.57 4.17
5899 6059 0.036164 AGCTGTTGCGGTATTGTGGA 59.964 50.000 0.00 0.00 45.42 4.02
5902 6062 1.732259 CTGTTGCGGTATTGTGGAGAC 59.268 52.381 0.00 0.00 0.00 3.36
6116 6276 0.513820 CGACGTAACCCGCACATTTT 59.486 50.000 0.00 0.00 41.42 1.82
6118 6278 2.157279 CGACGTAACCCGCACATTTTTA 59.843 45.455 0.00 0.00 41.42 1.52
6124 6284 6.316890 ACGTAACCCGCACATTTTTATAGATT 59.683 34.615 0.00 0.00 41.42 2.40
6125 6285 7.148205 ACGTAACCCGCACATTTTTATAGATTT 60.148 33.333 0.00 0.00 41.42 2.17
6126 6286 7.698970 CGTAACCCGCACATTTTTATAGATTTT 59.301 33.333 0.00 0.00 0.00 1.82
6145 6665 2.592623 TAGGCAGCGACACGACATCG 62.593 60.000 0.00 0.00 46.33 3.84
6168 6688 4.696899 CAGCAGCTCTGAATCATGAAAA 57.303 40.909 0.00 0.00 45.72 2.29
6169 6689 4.663166 CAGCAGCTCTGAATCATGAAAAG 58.337 43.478 0.00 0.00 45.72 2.27
6237 6757 1.299648 CATGGCAAAGAGGGTCCGA 59.700 57.895 0.00 0.00 0.00 4.55
6238 6758 1.026718 CATGGCAAAGAGGGTCCGAC 61.027 60.000 0.00 0.00 0.00 4.79
6240 6760 2.434359 GCAAAGAGGGTCCGACGG 60.434 66.667 7.84 7.84 0.00 4.79
6241 6761 2.939261 GCAAAGAGGGTCCGACGGA 61.939 63.158 13.88 13.88 0.00 4.69
6242 6762 1.669440 CAAAGAGGGTCCGACGGAA 59.331 57.895 20.26 0.00 31.38 4.30
6243 6763 0.389948 CAAAGAGGGTCCGACGGAAG 60.390 60.000 20.26 0.00 31.38 3.46
6244 6764 1.542187 AAAGAGGGTCCGACGGAAGG 61.542 60.000 20.26 0.00 31.38 3.46
6313 6833 2.103941 GCTCTGCCAATAAGTAGGAGCT 59.896 50.000 0.00 0.00 40.71 4.09
6314 6834 3.726607 CTCTGCCAATAAGTAGGAGCTG 58.273 50.000 0.00 0.00 0.00 4.24
6317 6837 2.092968 TGCCAATAAGTAGGAGCTGGTG 60.093 50.000 0.00 0.00 0.00 4.17
6318 6838 2.092914 GCCAATAAGTAGGAGCTGGTGT 60.093 50.000 0.00 0.00 0.00 4.16
6320 6840 3.452627 CCAATAAGTAGGAGCTGGTGTCT 59.547 47.826 0.00 0.00 0.00 3.41
6322 6842 2.310779 AAGTAGGAGCTGGTGTCTGA 57.689 50.000 0.00 0.00 0.00 3.27
6323 6843 2.541233 AGTAGGAGCTGGTGTCTGAT 57.459 50.000 0.00 0.00 0.00 2.90
6324 6844 3.671740 AGTAGGAGCTGGTGTCTGATA 57.328 47.619 0.00 0.00 0.00 2.15
6325 6845 4.191804 AGTAGGAGCTGGTGTCTGATAT 57.808 45.455 0.00 0.00 0.00 1.63
6326 6846 4.148838 AGTAGGAGCTGGTGTCTGATATC 58.851 47.826 0.00 0.00 0.00 1.63
6327 6847 3.037851 AGGAGCTGGTGTCTGATATCA 57.962 47.619 5.07 5.07 0.00 2.15
6328 6848 3.378512 AGGAGCTGGTGTCTGATATCAA 58.621 45.455 6.90 0.00 0.00 2.57
6329 6849 3.133721 AGGAGCTGGTGTCTGATATCAAC 59.866 47.826 6.90 8.62 0.00 3.18
6330 6850 3.118629 GGAGCTGGTGTCTGATATCAACA 60.119 47.826 6.90 10.93 0.00 3.33
6331 6851 4.507710 GAGCTGGTGTCTGATATCAACAA 58.492 43.478 16.96 3.46 30.70 2.83
6332 6852 5.108187 AGCTGGTGTCTGATATCAACAAT 57.892 39.130 16.96 4.82 30.70 2.71
6333 6853 4.880120 AGCTGGTGTCTGATATCAACAATG 59.120 41.667 16.96 12.62 30.70 2.82
6335 6855 3.947196 TGGTGTCTGATATCAACAATGGC 59.053 43.478 16.96 4.89 0.00 4.40
6336 6856 3.947196 GGTGTCTGATATCAACAATGGCA 59.053 43.478 16.96 7.07 0.00 4.92
6337 6857 4.201950 GGTGTCTGATATCAACAATGGCAC 60.202 45.833 14.90 14.90 0.00 5.01
6351 6871 0.107993 TGGCACATACTCTGCTCTGC 60.108 55.000 0.00 0.00 34.84 4.26
6352 6872 0.107993 GGCACATACTCTGCTCTGCA 60.108 55.000 0.00 0.00 36.92 4.41
6353 6873 1.474677 GGCACATACTCTGCTCTGCAT 60.475 52.381 0.00 0.00 38.13 3.96
6354 6874 1.598132 GCACATACTCTGCTCTGCATG 59.402 52.381 0.00 0.00 38.13 4.06
6355 6875 2.210961 CACATACTCTGCTCTGCATGG 58.789 52.381 0.00 0.00 38.13 3.66
6356 6876 1.227639 CATACTCTGCTCTGCATGGC 58.772 55.000 0.00 4.38 38.13 4.40
6357 6877 0.835276 ATACTCTGCTCTGCATGGCA 59.165 50.000 12.13 12.13 38.13 4.92
6358 6878 0.614812 TACTCTGCTCTGCATGGCAA 59.385 50.000 13.37 5.80 38.41 4.52
6359 6879 0.034380 ACTCTGCTCTGCATGGCAAT 60.034 50.000 13.37 2.10 38.41 3.56
6360 6880 1.103803 CTCTGCTCTGCATGGCAATT 58.896 50.000 13.37 0.00 38.41 2.32
6361 6881 1.476891 CTCTGCTCTGCATGGCAATTT 59.523 47.619 13.37 0.00 38.41 1.82
6364 6884 2.164827 CTGCTCTGCATGGCAATTTGTA 59.835 45.455 13.37 0.00 38.41 2.41
6365 6885 2.094597 TGCTCTGCATGGCAATTTGTAC 60.095 45.455 10.63 0.00 38.41 2.90
6366 6886 2.165030 GCTCTGCATGGCAATTTGTACT 59.835 45.455 0.00 0.00 38.41 2.73
6393 6913 2.489329 CCACCAACAAATACTCTGCTGG 59.511 50.000 0.00 0.00 36.33 4.85
6400 6920 3.018856 CAAATACTCTGCTGGATGGCAA 58.981 45.455 0.00 0.00 41.94 4.52
6401 6921 3.589951 AATACTCTGCTGGATGGCAAT 57.410 42.857 0.00 0.00 41.94 3.56
6405 6925 0.040058 TCTGCTGGATGGCAATTGGT 59.960 50.000 7.72 0.00 41.94 3.67
6407 6927 1.406539 CTGCTGGATGGCAATTGGTAC 59.593 52.381 7.72 0.00 41.94 3.34
6408 6928 1.005805 TGCTGGATGGCAATTGGTACT 59.994 47.619 7.72 0.00 39.43 2.73
6409 6929 1.406539 GCTGGATGGCAATTGGTACTG 59.593 52.381 7.72 0.00 0.00 2.74
6410 6930 1.406539 CTGGATGGCAATTGGTACTGC 59.593 52.381 7.72 0.00 37.86 4.40
6411 6931 1.272369 TGGATGGCAATTGGTACTGCA 60.272 47.619 7.72 0.00 40.46 4.41
6412 6932 1.824230 GGATGGCAATTGGTACTGCAA 59.176 47.619 7.72 0.00 40.46 4.08
6413 6933 2.233431 GGATGGCAATTGGTACTGCAAA 59.767 45.455 7.72 0.00 40.46 3.68
6417 6992 2.403259 GCAATTGGTACTGCAAACCAC 58.597 47.619 17.90 5.53 46.56 4.16
6441 7016 3.201290 AGCATCGATCTCCAATCAACAC 58.799 45.455 0.00 0.00 0.00 3.32
6455 7030 6.538021 TCCAATCAACACATTTGAAAAGTTGG 59.462 34.615 15.93 9.41 39.84 3.77
6459 7034 7.593875 TCAACACATTTGAAAAGTTGGAAAG 57.406 32.000 15.93 0.00 39.84 2.62
6467 7046 8.490355 CATTTGAAAAGTTGGAAAGAGTATTGC 58.510 33.333 0.00 0.00 0.00 3.56
6470 7049 7.725251 TGAAAAGTTGGAAAGAGTATTGCATT 58.275 30.769 0.00 0.00 30.43 3.56
6493 7072 5.874895 CAGCAACTCTGAATCATGAAAGA 57.125 39.130 0.00 2.72 45.72 2.52
6494 7073 6.438259 CAGCAACTCTGAATCATGAAAGAT 57.562 37.500 0.00 0.00 45.72 2.40
6495 7074 6.853720 CAGCAACTCTGAATCATGAAAGATT 58.146 36.000 0.00 0.00 45.72 2.40
6507 7086 5.434408 TCATGAAAGATTCCCTGTGATCTG 58.566 41.667 0.00 0.00 0.00 2.90
6527 7106 4.802999 CTGAGTTCAGAATTTCCTTTGGC 58.197 43.478 2.97 0.00 46.59 4.52
6572 7151 4.890158 TGAGAATACCAGAAACAGCTCA 57.110 40.909 0.00 0.00 0.00 4.26
6579 7158 1.815003 CCAGAAACAGCTCAATGTCCC 59.185 52.381 0.00 0.00 31.50 4.46
6625 7213 1.153549 GCTTCCCTCAGTAGCCACG 60.154 63.158 0.00 0.00 0.00 4.94
6626 7214 1.517832 CTTCCCTCAGTAGCCACGG 59.482 63.158 0.00 0.00 0.00 4.94
6646 7235 3.091545 GGGAAATTTGCAGGATCACAGA 58.908 45.455 12.05 0.00 0.00 3.41
6649 7238 4.479619 GAAATTTGCAGGATCACAGACAC 58.520 43.478 0.00 0.00 0.00 3.67
6673 7262 3.898123 ACCACACACAGAGAGACAGTAAT 59.102 43.478 0.00 0.00 0.00 1.89
6703 7352 4.756642 TCAGAGTATGCACAAAGAAACCAG 59.243 41.667 0.00 0.00 0.00 4.00
6704 7353 4.074970 AGAGTATGCACAAAGAAACCAGG 58.925 43.478 0.00 0.00 0.00 4.45
6711 7360 2.624838 CACAAAGAAACCAGGCACATCT 59.375 45.455 0.00 0.00 0.00 2.90
6727 7376 4.525996 CACATCTCCCATCCACACAAATA 58.474 43.478 0.00 0.00 0.00 1.40
6736 7385 5.874261 CCCATCCACACAAATAAATGGTTTC 59.126 40.000 0.00 0.00 33.37 2.78
6745 7394 5.304101 ACAAATAAATGGTTTCTGCACTGGA 59.696 36.000 0.00 0.00 0.00 3.86
6883 7546 6.398918 GGTCAGATGTATAATTAGCCGATGT 58.601 40.000 0.00 0.00 0.00 3.06
6884 7547 7.363530 GGGTCAGATGTATAATTAGCCGATGTA 60.364 40.741 0.00 0.00 0.00 2.29
6885 7548 8.198109 GGTCAGATGTATAATTAGCCGATGTAT 58.802 37.037 0.00 0.00 0.00 2.29
7074 7800 2.036731 TGGTCGACGTGAGGGGAT 59.963 61.111 9.92 0.00 0.00 3.85
7077 7803 1.392710 GGTCGACGTGAGGGGATGAT 61.393 60.000 9.92 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.188163 TGTGATTAATGGGTTCGAGTTAGGA 59.812 40.000 0.00 0.00 0.00 2.94
190 263 4.379243 AAGCCTCGCCTGACCACG 62.379 66.667 0.00 0.00 0.00 4.94
252 325 1.608336 CCCCTGGTCCTCACACGTA 60.608 63.158 0.00 0.00 0.00 3.57
279 352 1.272536 ACATCGTCTACCAGACCACCT 60.273 52.381 0.89 0.00 42.12 4.00
295 368 2.125106 GACCGCCACCTCCACATC 60.125 66.667 0.00 0.00 0.00 3.06
364 437 3.854669 CAGACAGCCCCTAGCCCG 61.855 72.222 0.00 0.00 45.47 6.13
385 458 1.122019 ATCGCCACCTCCATACCCTC 61.122 60.000 0.00 0.00 0.00 4.30
391 464 2.502492 CCTCGATCGCCACCTCCAT 61.502 63.158 11.09 0.00 0.00 3.41
445 518 6.459573 GCGGATTTTCATATAAACCAGAGCAA 60.460 38.462 0.00 0.00 0.00 3.91
488 561 2.220133 CACTGTTTCAACTAACCGGACG 59.780 50.000 9.46 0.00 0.00 4.79
531 604 2.272146 GAGAGCCGGCCATCCAAA 59.728 61.111 26.15 0.00 0.00 3.28
562 635 0.690762 GGATATAGGAGCCGCCCAAA 59.309 55.000 1.37 0.00 37.37 3.28
563 636 0.178903 AGGATATAGGAGCCGCCCAA 60.179 55.000 1.37 0.00 39.29 4.12
564 637 0.178903 AAGGATATAGGAGCCGCCCA 60.179 55.000 1.37 0.00 39.29 5.36
565 638 0.250513 CAAGGATATAGGAGCCGCCC 59.749 60.000 0.00 0.00 39.29 6.13
594 667 3.155998 CTGTAAATTTGCTTCTGCGTCG 58.844 45.455 7.80 0.00 43.34 5.12
674 747 7.011499 TGCCAAGAGTTAAGTGATTACCTAA 57.989 36.000 0.00 0.00 0.00 2.69
694 768 2.302260 TCAACGGAAACAAGAATGCCA 58.698 42.857 0.00 0.00 0.00 4.92
758 832 0.179004 TGTGGGTCGGCAGTTTCATT 60.179 50.000 0.00 0.00 0.00 2.57
771 845 3.135994 GTCTACATGTTCGTTTGTGGGT 58.864 45.455 2.30 0.00 0.00 4.51
874 948 8.755941 GCTTCAATGTTTTCTTTTACCTTCTTC 58.244 33.333 0.00 0.00 0.00 2.87
915 989 2.131972 CGCATCCGATTCCAACGATAA 58.868 47.619 0.00 0.00 36.29 1.75
932 1006 2.753849 GCCCAGGGTAATTGCGCA 60.754 61.111 5.66 5.66 0.00 6.09
933 1007 3.887868 CGCCCAGGGTAATTGCGC 61.888 66.667 7.55 0.00 38.69 6.09
934 1008 1.714899 CTTCGCCCAGGGTAATTGCG 61.715 60.000 7.55 2.95 46.09 4.85
935 1009 0.393808 TCTTCGCCCAGGGTAATTGC 60.394 55.000 7.55 0.00 0.00 3.56
936 1010 1.668419 CTCTTCGCCCAGGGTAATTG 58.332 55.000 7.55 0.00 0.00 2.32
937 1011 0.107165 GCTCTTCGCCCAGGGTAATT 60.107 55.000 7.55 0.00 0.00 1.40
938 1012 1.527370 GCTCTTCGCCCAGGGTAAT 59.473 57.895 7.55 0.00 0.00 1.89
939 1013 2.987125 GCTCTTCGCCCAGGGTAA 59.013 61.111 7.55 1.00 0.00 2.85
949 1023 1.989966 TTAGACGAGCCGGCTCTTCG 61.990 60.000 40.82 35.16 44.38 3.79
950 1024 0.172803 TTTAGACGAGCCGGCTCTTC 59.827 55.000 41.22 41.22 44.38 2.87
951 1025 0.606604 TTTTAGACGAGCCGGCTCTT 59.393 50.000 44.11 39.19 44.38 2.85
952 1026 0.606604 TTTTTAGACGAGCCGGCTCT 59.393 50.000 44.11 33.50 44.38 4.09
953 1027 3.132863 TTTTTAGACGAGCCGGCTC 57.867 52.632 40.89 40.89 44.38 4.70
968 1042 3.512329 ACCAAGAAAGGTGAACCGTTTTT 59.488 39.130 2.13 0.59 41.30 1.94
985 1059 1.308069 CGGGTGGCTCATCAACCAAG 61.308 60.000 0.00 0.00 44.50 3.61
987 1061 2.350895 CGGGTGGCTCATCAACCA 59.649 61.111 0.00 0.00 44.50 3.67
1333 1407 1.906574 ACGGCAAAATCCTGGAGAGTA 59.093 47.619 1.52 0.00 0.00 2.59
1339 1482 0.168128 GACGAACGGCAAAATCCTGG 59.832 55.000 0.00 0.00 0.00 4.45
1351 1494 2.022129 GTGCCTGTCCAGACGAACG 61.022 63.158 0.00 0.00 0.00 3.95
1354 1497 2.574018 CCTGTGCCTGTCCAGACGA 61.574 63.158 0.00 0.00 0.00 4.20
1356 1499 2.359230 GCCTGTGCCTGTCCAGAC 60.359 66.667 0.00 0.00 0.00 3.51
1357 1500 1.782201 ATTGCCTGTGCCTGTCCAGA 61.782 55.000 0.00 0.00 36.33 3.86
1363 1506 0.968901 ACCATGATTGCCTGTGCCTG 60.969 55.000 0.00 0.00 36.33 4.85
1373 1516 1.238439 GGGATACGCCACCATGATTG 58.762 55.000 0.00 0.00 38.95 2.67
1446 1589 1.603172 GGCTAACATCCTCGACATCGG 60.603 57.143 0.73 0.00 40.29 4.18
1465 1608 1.098050 GGTAGTGCATGCTCCTTTGG 58.902 55.000 20.33 0.00 0.00 3.28
1479 1622 0.912486 GCCCTTGATGAGGTGGTAGT 59.088 55.000 0.00 0.00 44.71 2.73
1480 1623 1.139853 GAGCCCTTGATGAGGTGGTAG 59.860 57.143 0.00 0.00 44.71 3.18
1570 1713 3.672295 CTGCCGCCTTGACTCCTCC 62.672 68.421 0.00 0.00 0.00 4.30
1612 1755 1.391485 CTCTTGTTGAGCAATCGGACG 59.609 52.381 0.00 0.00 36.36 4.79
1746 1889 2.825205 AGGCACAACAATCAAACTTGC 58.175 42.857 0.00 0.00 0.00 4.01
1800 1943 5.716228 TGCCTAATGATGTTTTGGATGAACT 59.284 36.000 0.00 0.00 0.00 3.01
1902 2045 7.013823 TCATCTTCTTCTTCCTTGTTCATCT 57.986 36.000 0.00 0.00 0.00 2.90
1904 2047 7.631933 AGATCATCTTCTTCTTCCTTGTTCAT 58.368 34.615 0.00 0.00 0.00 2.57
1999 2142 5.411361 TGTTTTTATCTGATCCCACTGTTCG 59.589 40.000 0.00 0.00 0.00 3.95
2000 2143 6.817765 TGTTTTTATCTGATCCCACTGTTC 57.182 37.500 0.00 0.00 0.00 3.18
2022 2165 6.349611 CCCTCTCTTGTTGTGTGGAAATAATG 60.350 42.308 0.00 0.00 0.00 1.90
2515 2658 9.530633 GACCTTAACTGTGTAGAACCATATAAG 57.469 37.037 0.00 0.00 0.00 1.73
2654 2797 2.554032 CAGTTGTTTAGGTGGAAGCAGG 59.446 50.000 0.00 0.00 36.26 4.85
2655 2798 3.476552 TCAGTTGTTTAGGTGGAAGCAG 58.523 45.455 0.00 0.00 36.26 4.24
2700 2845 4.096833 TGCAGCTCAATGGTGTATTCATTC 59.903 41.667 0.00 0.00 45.23 2.67
2739 2884 1.151668 CTCTAGCAAGCCACACACAC 58.848 55.000 0.00 0.00 0.00 3.82
2843 2988 1.270893 GGCTCCGGTGATATTTCCTCC 60.271 57.143 7.92 0.00 0.00 4.30
2919 3064 0.577269 GTGTCGATGCGAGTAATGCC 59.423 55.000 0.00 0.00 36.23 4.40
2943 3088 1.321474 TCCTCCAAAGCAGCAAACAG 58.679 50.000 0.00 0.00 0.00 3.16
3047 3192 2.797162 ACCACCCATTCCCCATAATGAT 59.203 45.455 0.00 0.00 38.84 2.45
3087 3232 9.585099 CTCTTGGCTTTGATATATATCTCTGAC 57.415 37.037 20.74 13.60 33.88 3.51
3261 3406 2.158914 TCGGCAGCAGATGTATGTCATT 60.159 45.455 0.00 0.00 36.83 2.57
3286 3432 6.098838 TGGGCAAATGTTGTATTATGGCATTA 59.901 34.615 4.78 0.00 35.31 1.90
3307 3453 1.744320 AACTTCCCGCTGTTTTGGGC 61.744 55.000 0.00 0.00 45.60 5.36
3427 3573 9.561069 GCTTATACCTTCCTCATCAAAAGAATA 57.439 33.333 0.00 0.00 0.00 1.75
4281 4440 9.883142 CTGATTAAACTTTCTCCATTCTAGAGT 57.117 33.333 0.00 0.00 32.93 3.24
4544 4703 7.656542 GGTAGGACCATACTTCTGCTTATAAAC 59.343 40.741 0.00 0.00 38.42 2.01
4568 4727 7.055667 ACTATACATTGATCGTTGAGATGGT 57.944 36.000 2.03 1.44 40.26 3.55
5039 5198 0.466922 GGATGATGGTCCTTGGCAGG 60.467 60.000 0.00 0.00 42.50 4.85
5149 5308 7.290061 ACAAAGCATAGAGAATAAGGGCATAA 58.710 34.615 0.00 0.00 0.00 1.90
5286 5445 4.171005 TGTACACTTAGACGCATTAGCAC 58.829 43.478 0.00 0.00 42.27 4.40
5395 5555 4.562789 TGAGCGAGTCTTTTTATGTCATCG 59.437 41.667 0.00 0.00 0.00 3.84
5459 5619 3.056607 ACTGCTGAACATAACATTTGGCC 60.057 43.478 0.00 0.00 0.00 5.36
5460 5620 4.178545 ACTGCTGAACATAACATTTGGC 57.821 40.909 0.00 0.00 0.00 4.52
5461 5621 4.386652 GCAACTGCTGAACATAACATTTGG 59.613 41.667 0.00 0.00 38.21 3.28
5462 5622 5.505165 GCAACTGCTGAACATAACATTTG 57.495 39.130 0.00 0.00 38.21 2.32
5484 5644 4.504916 CGAGGCGGCTGAGACCAG 62.505 72.222 19.63 0.00 43.22 4.00
5486 5646 4.200283 CTCGAGGCGGCTGAGACC 62.200 72.222 19.63 0.00 31.31 3.85
5487 5647 3.404141 GACTCGAGGCGGCTGAGAC 62.404 68.421 30.66 24.41 33.93 3.36
5488 5648 3.134792 GACTCGAGGCGGCTGAGA 61.135 66.667 30.66 22.58 33.93 3.27
5489 5649 2.290122 AATGACTCGAGGCGGCTGAG 62.290 60.000 25.75 25.75 35.85 3.35
5490 5650 2.351244 AATGACTCGAGGCGGCTGA 61.351 57.895 19.63 13.44 0.00 4.26
5491 5651 2.169789 CAATGACTCGAGGCGGCTG 61.170 63.158 19.63 9.30 0.00 4.85
5492 5652 2.185350 CAATGACTCGAGGCGGCT 59.815 61.111 13.09 13.09 0.00 5.52
5493 5653 2.167861 GTCAATGACTCGAGGCGGC 61.168 63.158 18.41 0.00 0.00 6.53
5494 5654 1.874019 CGTCAATGACTCGAGGCGG 60.874 63.158 18.41 7.76 0.00 6.13
5495 5655 0.248661 ATCGTCAATGACTCGAGGCG 60.249 55.000 18.41 2.11 37.04 5.52
5496 5656 1.202302 TCATCGTCAATGACTCGAGGC 60.202 52.381 18.41 15.78 39.52 4.70
5497 5657 2.851805 TCATCGTCAATGACTCGAGG 57.148 50.000 18.41 6.69 39.52 4.63
5498 5658 2.533535 GCTTCATCGTCAATGACTCGAG 59.466 50.000 11.84 11.84 44.14 4.04
5499 5659 2.530177 GCTTCATCGTCAATGACTCGA 58.470 47.619 11.92 5.12 44.14 4.04
5500 5660 1.590238 GGCTTCATCGTCAATGACTCG 59.410 52.381 11.92 0.00 44.14 4.18
5501 5661 2.349886 GTGGCTTCATCGTCAATGACTC 59.650 50.000 11.92 0.00 44.14 3.36
5502 5662 2.289631 TGTGGCTTCATCGTCAATGACT 60.290 45.455 11.92 0.00 44.14 3.41
5503 5663 2.076100 TGTGGCTTCATCGTCAATGAC 58.924 47.619 2.75 2.75 44.14 3.06
5504 5664 2.470983 TGTGGCTTCATCGTCAATGA 57.529 45.000 0.00 0.00 42.76 2.57
5505 5665 3.557577 TTTGTGGCTTCATCGTCAATG 57.442 42.857 0.00 0.00 36.65 2.82
5506 5666 3.057315 CCTTTTGTGGCTTCATCGTCAAT 60.057 43.478 0.00 0.00 0.00 2.57
5507 5667 2.293122 CCTTTTGTGGCTTCATCGTCAA 59.707 45.455 0.00 0.00 0.00 3.18
5508 5668 1.879380 CCTTTTGTGGCTTCATCGTCA 59.121 47.619 0.00 0.00 0.00 4.35
5509 5669 2.151202 TCCTTTTGTGGCTTCATCGTC 58.849 47.619 0.00 0.00 0.00 4.20
5510 5670 2.270352 TCCTTTTGTGGCTTCATCGT 57.730 45.000 0.00 0.00 0.00 3.73
5511 5671 3.191162 TGATTCCTTTTGTGGCTTCATCG 59.809 43.478 0.00 0.00 0.00 3.84
5512 5672 4.381292 CCTGATTCCTTTTGTGGCTTCATC 60.381 45.833 0.00 0.00 0.00 2.92
5513 5673 3.512724 CCTGATTCCTTTTGTGGCTTCAT 59.487 43.478 0.00 0.00 0.00 2.57
5514 5674 2.892852 CCTGATTCCTTTTGTGGCTTCA 59.107 45.455 0.00 0.00 0.00 3.02
5515 5675 2.893489 ACCTGATTCCTTTTGTGGCTTC 59.107 45.455 0.00 0.00 0.00 3.86
5516 5676 2.893489 GACCTGATTCCTTTTGTGGCTT 59.107 45.455 0.00 0.00 0.00 4.35
5517 5677 2.108952 AGACCTGATTCCTTTTGTGGCT 59.891 45.455 0.00 0.00 0.00 4.75
5518 5678 2.229784 CAGACCTGATTCCTTTTGTGGC 59.770 50.000 0.00 0.00 0.00 5.01
5519 5679 3.254166 CACAGACCTGATTCCTTTTGTGG 59.746 47.826 3.76 0.00 33.06 4.17
5520 5680 3.885297 ACACAGACCTGATTCCTTTTGTG 59.115 43.478 3.76 0.00 40.22 3.33
5521 5681 3.885297 CACACAGACCTGATTCCTTTTGT 59.115 43.478 3.76 0.00 0.00 2.83
5522 5682 3.254166 CCACACAGACCTGATTCCTTTTG 59.746 47.826 3.76 0.00 0.00 2.44
5523 5683 3.138283 TCCACACAGACCTGATTCCTTTT 59.862 43.478 3.76 0.00 0.00 2.27
5524 5684 2.711009 TCCACACAGACCTGATTCCTTT 59.289 45.455 3.76 0.00 0.00 3.11
5525 5685 2.338809 TCCACACAGACCTGATTCCTT 58.661 47.619 3.76 0.00 0.00 3.36
5526 5686 2.030027 TCCACACAGACCTGATTCCT 57.970 50.000 3.76 0.00 0.00 3.36
5527 5687 2.026822 ACATCCACACAGACCTGATTCC 60.027 50.000 3.76 0.00 0.00 3.01
5528 5688 3.340814 ACATCCACACAGACCTGATTC 57.659 47.619 3.76 0.00 0.00 2.52
5529 5689 3.795688 AACATCCACACAGACCTGATT 57.204 42.857 3.76 0.00 0.00 2.57
5530 5690 3.415212 CAAACATCCACACAGACCTGAT 58.585 45.455 3.76 0.00 0.00 2.90
5531 5691 2.487086 CCAAACATCCACACAGACCTGA 60.487 50.000 3.76 0.00 0.00 3.86
5532 5692 1.881973 CCAAACATCCACACAGACCTG 59.118 52.381 0.00 0.00 0.00 4.00
5533 5693 1.774254 TCCAAACATCCACACAGACCT 59.226 47.619 0.00 0.00 0.00 3.85
5534 5694 2.270352 TCCAAACATCCACACAGACC 57.730 50.000 0.00 0.00 0.00 3.85
5535 5695 2.489329 CCATCCAAACATCCACACAGAC 59.511 50.000 0.00 0.00 0.00 3.51
5536 5696 2.374839 TCCATCCAAACATCCACACAGA 59.625 45.455 0.00 0.00 0.00 3.41
5537 5697 2.794103 TCCATCCAAACATCCACACAG 58.206 47.619 0.00 0.00 0.00 3.66
5538 5698 2.890311 GTTCCATCCAAACATCCACACA 59.110 45.455 0.00 0.00 0.00 3.72
5539 5699 2.095263 CGTTCCATCCAAACATCCACAC 60.095 50.000 0.00 0.00 0.00 3.82
5540 5700 2.158559 CGTTCCATCCAAACATCCACA 58.841 47.619 0.00 0.00 0.00 4.17
5541 5701 1.472480 CCGTTCCATCCAAACATCCAC 59.528 52.381 0.00 0.00 0.00 4.02
5542 5702 1.832883 CCGTTCCATCCAAACATCCA 58.167 50.000 0.00 0.00 0.00 3.41
5543 5703 0.455815 GCCGTTCCATCCAAACATCC 59.544 55.000 0.00 0.00 0.00 3.51
5544 5704 0.455815 GGCCGTTCCATCCAAACATC 59.544 55.000 0.00 0.00 34.01 3.06
5545 5705 0.039618 AGGCCGTTCCATCCAAACAT 59.960 50.000 0.00 0.00 37.29 2.71
5546 5706 0.608035 GAGGCCGTTCCATCCAAACA 60.608 55.000 0.00 0.00 37.29 2.83
5547 5707 0.608035 TGAGGCCGTTCCATCCAAAC 60.608 55.000 0.00 0.00 37.29 2.93
5548 5708 0.608035 GTGAGGCCGTTCCATCCAAA 60.608 55.000 0.00 0.00 37.29 3.28
5549 5709 1.002624 GTGAGGCCGTTCCATCCAA 60.003 57.895 0.00 0.00 37.29 3.53
5550 5710 2.668632 GTGAGGCCGTTCCATCCA 59.331 61.111 0.00 0.00 37.29 3.41
5551 5711 2.124695 GGTGAGGCCGTTCCATCC 60.125 66.667 0.00 0.00 37.29 3.51
5552 5712 1.153349 GAGGTGAGGCCGTTCCATC 60.153 63.158 13.80 4.67 43.70 3.51
5553 5713 2.670148 GGAGGTGAGGCCGTTCCAT 61.670 63.158 13.80 0.00 43.70 3.41
5554 5714 3.319198 GGAGGTGAGGCCGTTCCA 61.319 66.667 13.80 1.68 43.70 3.53
5555 5715 2.406002 TTTGGAGGTGAGGCCGTTCC 62.406 60.000 0.00 0.39 43.70 3.62
5556 5716 0.536460 TTTTGGAGGTGAGGCCGTTC 60.536 55.000 0.00 0.00 43.70 3.95
5557 5717 0.106419 TTTTTGGAGGTGAGGCCGTT 60.106 50.000 0.00 0.00 43.70 4.44
5558 5718 1.534697 TTTTTGGAGGTGAGGCCGT 59.465 52.632 0.00 0.00 43.70 5.68
5559 5719 4.492604 TTTTTGGAGGTGAGGCCG 57.507 55.556 0.00 0.00 43.70 6.13
5583 5743 2.866085 GCCGATCAGCTTGAGGCACT 62.866 60.000 12.71 0.00 46.48 4.40
5584 5744 2.467826 GCCGATCAGCTTGAGGCAC 61.468 63.158 12.71 0.00 46.48 5.01
5585 5745 2.124983 GCCGATCAGCTTGAGGCA 60.125 61.111 12.71 0.00 46.48 4.75
5587 5747 0.392193 AGTTGCCGATCAGCTTGAGG 60.392 55.000 2.00 0.00 31.84 3.86
5588 5748 1.446907 AAGTTGCCGATCAGCTTGAG 58.553 50.000 2.00 0.00 43.31 3.02
5589 5749 3.631453 AAGTTGCCGATCAGCTTGA 57.369 47.368 2.00 0.00 43.31 3.02
5591 5751 0.962356 CCCAAGTTGCCGATCAGCTT 60.962 55.000 2.00 2.04 45.39 3.74
5592 5752 1.377725 CCCAAGTTGCCGATCAGCT 60.378 57.895 2.00 0.00 37.90 4.24
5593 5753 3.056313 GCCCAAGTTGCCGATCAGC 62.056 63.158 0.00 0.00 0.00 4.26
5594 5754 1.243342 TTGCCCAAGTTGCCGATCAG 61.243 55.000 0.00 0.00 0.00 2.90
5595 5755 0.825425 TTTGCCCAAGTTGCCGATCA 60.825 50.000 0.00 0.00 0.00 2.92
5596 5756 0.388520 GTTTGCCCAAGTTGCCGATC 60.389 55.000 0.00 0.00 0.00 3.69
5597 5757 0.827507 AGTTTGCCCAAGTTGCCGAT 60.828 50.000 0.00 0.00 0.00 4.18
5598 5758 1.454847 AGTTTGCCCAAGTTGCCGA 60.455 52.632 0.00 0.00 0.00 5.54
5599 5759 1.300080 CAGTTTGCCCAAGTTGCCG 60.300 57.895 0.00 0.00 0.00 5.69
5600 5760 1.595109 GCAGTTTGCCCAAGTTGCC 60.595 57.895 0.00 0.00 37.42 4.52
5601 5761 4.032356 GCAGTTTGCCCAAGTTGC 57.968 55.556 0.00 4.02 37.42 4.17
5858 6018 0.329596 AGCTTAGGGGTTGCTCCTTG 59.670 55.000 0.00 0.00 35.92 3.61
5899 6059 0.036952 CGATGCACTGTGAAGGGTCT 60.037 55.000 12.86 0.00 0.00 3.85
5902 6062 2.401766 GGCGATGCACTGTGAAGGG 61.402 63.158 12.86 0.00 0.00 3.95
6116 6276 4.743151 CGTGTCGCTGCCTAAAATCTATAA 59.257 41.667 0.00 0.00 0.00 0.98
6118 6278 3.123804 CGTGTCGCTGCCTAAAATCTAT 58.876 45.455 0.00 0.00 0.00 1.98
6124 6284 0.037697 ATGTCGTGTCGCTGCCTAAA 60.038 50.000 0.00 0.00 0.00 1.85
6125 6285 0.457853 GATGTCGTGTCGCTGCCTAA 60.458 55.000 0.00 0.00 0.00 2.69
6126 6286 1.138883 GATGTCGTGTCGCTGCCTA 59.861 57.895 0.00 0.00 0.00 3.93
6153 6673 4.015084 ACAGGCCTTTTCATGATTCAGAG 58.985 43.478 0.00 0.00 0.00 3.35
6154 6674 4.012374 GACAGGCCTTTTCATGATTCAGA 58.988 43.478 0.00 0.00 0.00 3.27
6158 6678 3.094572 CCTGACAGGCCTTTTCATGATT 58.905 45.455 8.99 0.00 0.00 2.57
6159 6679 2.731572 CCTGACAGGCCTTTTCATGAT 58.268 47.619 8.99 0.00 0.00 2.45
6160 6680 2.205022 CCTGACAGGCCTTTTCATGA 57.795 50.000 8.99 0.00 0.00 3.07
6213 6733 1.039233 CCCTCTTTGCCATGGCGATT 61.039 55.000 30.87 0.00 45.51 3.34
6225 6745 1.542187 CCTTCCGTCGGACCCTCTTT 61.542 60.000 15.07 0.00 0.00 2.52
6226 6746 1.982938 CCTTCCGTCGGACCCTCTT 60.983 63.158 15.07 0.00 0.00 2.85
6238 6758 4.772231 TCCTCGGTCCCCCTTCCG 62.772 72.222 0.00 0.00 46.93 4.30
6240 6760 3.108288 GCATCCTCGGTCCCCCTTC 62.108 68.421 0.00 0.00 0.00 3.46
6241 6761 3.090532 GCATCCTCGGTCCCCCTT 61.091 66.667 0.00 0.00 0.00 3.95
6244 6764 3.171388 ATGGCATCCTCGGTCCCC 61.171 66.667 0.00 0.00 0.00 4.81
6246 6766 2.427753 GGATGGCATCCTCGGTCC 59.572 66.667 34.15 12.12 46.19 4.46
6305 6825 3.891977 TGATATCAGACACCAGCTCCTAC 59.108 47.826 0.00 0.00 0.00 3.18
6310 6830 4.558226 TTGTTGATATCAGACACCAGCT 57.442 40.909 15.73 0.00 0.00 4.24
6313 6833 3.947196 GCCATTGTTGATATCAGACACCA 59.053 43.478 15.73 7.24 0.00 4.17
6314 6834 3.947196 TGCCATTGTTGATATCAGACACC 59.053 43.478 15.73 8.74 0.00 4.16
6317 6837 5.762825 ATGTGCCATTGTTGATATCAGAC 57.237 39.130 5.39 8.05 0.00 3.51
6318 6838 6.594744 AGTATGTGCCATTGTTGATATCAGA 58.405 36.000 5.39 0.00 0.00 3.27
6320 6840 6.484308 CAGAGTATGTGCCATTGTTGATATCA 59.516 38.462 0.00 0.00 0.00 2.15
6322 6842 6.872628 CAGAGTATGTGCCATTGTTGATAT 57.127 37.500 0.00 0.00 0.00 1.63
6335 6855 2.210961 CCATGCAGAGCAGAGTATGTG 58.789 52.381 0.00 0.00 43.65 3.21
6336 6856 1.474677 GCCATGCAGAGCAGAGTATGT 60.475 52.381 5.90 0.00 43.65 2.29
6337 6857 1.227639 GCCATGCAGAGCAGAGTATG 58.772 55.000 5.90 0.00 43.65 2.39
6339 6859 0.614812 TTGCCATGCAGAGCAGAGTA 59.385 50.000 12.61 0.00 43.65 2.59
6340 6860 0.034380 ATTGCCATGCAGAGCAGAGT 60.034 50.000 12.61 2.50 43.65 3.24
6341 6861 1.103803 AATTGCCATGCAGAGCAGAG 58.896 50.000 12.61 0.00 43.65 3.35
6342 6862 1.203758 CAAATTGCCATGCAGAGCAGA 59.796 47.619 12.61 5.98 43.65 4.26
6343 6863 1.067142 ACAAATTGCCATGCAGAGCAG 60.067 47.619 12.61 5.16 43.65 4.24
6344 6864 0.970640 ACAAATTGCCATGCAGAGCA 59.029 45.000 9.24 9.24 44.86 4.26
6345 6865 2.165030 AGTACAAATTGCCATGCAGAGC 59.835 45.455 3.84 3.84 40.61 4.09
6346 6866 3.766151 CAGTACAAATTGCCATGCAGAG 58.234 45.455 0.00 0.00 40.61 3.35
6347 6867 2.094597 GCAGTACAAATTGCCATGCAGA 60.095 45.455 10.63 0.00 40.61 4.26
6348 6868 2.264813 GCAGTACAAATTGCCATGCAG 58.735 47.619 10.63 0.00 40.61 4.41
6349 6869 1.617357 TGCAGTACAAATTGCCATGCA 59.383 42.857 13.22 13.22 37.53 3.96
6350 6870 2.367030 TGCAGTACAAATTGCCATGC 57.633 45.000 9.13 9.13 37.53 4.06
6359 6879 2.826128 TGTTGGTGGTTTGCAGTACAAA 59.174 40.909 0.00 0.00 46.01 2.83
6360 6880 2.447443 TGTTGGTGGTTTGCAGTACAA 58.553 42.857 0.00 0.00 36.13 2.41
6361 6881 2.130272 TGTTGGTGGTTTGCAGTACA 57.870 45.000 0.00 0.00 0.00 2.90
6364 6884 3.704061 AGTATTTGTTGGTGGTTTGCAGT 59.296 39.130 0.00 0.00 0.00 4.40
6365 6885 4.037923 AGAGTATTTGTTGGTGGTTTGCAG 59.962 41.667 0.00 0.00 0.00 4.41
6366 6886 3.957497 AGAGTATTTGTTGGTGGTTTGCA 59.043 39.130 0.00 0.00 0.00 4.08
6376 6896 3.181493 GCCATCCAGCAGAGTATTTGTTG 60.181 47.826 0.00 0.00 0.00 3.33
6378 6898 2.025981 TGCCATCCAGCAGAGTATTTGT 60.026 45.455 0.00 0.00 38.00 2.83
6393 6913 3.253230 GTTTGCAGTACCAATTGCCATC 58.747 45.455 0.00 0.00 37.53 3.51
6400 6920 2.675658 AGGTGGTTTGCAGTACCAAT 57.324 45.000 20.48 11.91 46.62 3.16
6401 6921 2.812613 GCTAGGTGGTTTGCAGTACCAA 60.813 50.000 20.48 8.10 46.62 3.67
6405 6925 2.676750 CGATGCTAGGTGGTTTGCAGTA 60.677 50.000 0.00 0.00 38.87 2.74
6407 6927 0.729116 CGATGCTAGGTGGTTTGCAG 59.271 55.000 0.00 0.00 38.87 4.41
6408 6928 0.323302 TCGATGCTAGGTGGTTTGCA 59.677 50.000 0.00 0.00 39.83 4.08
6409 6929 1.599542 GATCGATGCTAGGTGGTTTGC 59.400 52.381 0.54 0.00 0.00 3.68
6410 6930 3.126831 GAGATCGATGCTAGGTGGTTTG 58.873 50.000 0.54 0.00 0.00 2.93
6411 6931 2.103263 GGAGATCGATGCTAGGTGGTTT 59.897 50.000 0.54 0.00 0.00 3.27
6412 6932 1.689273 GGAGATCGATGCTAGGTGGTT 59.311 52.381 0.54 0.00 0.00 3.67
6413 6933 1.333177 GGAGATCGATGCTAGGTGGT 58.667 55.000 0.54 0.00 0.00 4.16
6417 6992 3.949842 TGATTGGAGATCGATGCTAGG 57.050 47.619 0.54 0.00 0.00 3.02
6441 7016 8.490355 GCAATACTCTTTCCAACTTTTCAAATG 58.510 33.333 0.00 0.00 0.00 2.32
6483 7062 6.062749 CAGATCACAGGGAATCTTTCATGAT 58.937 40.000 0.00 0.00 0.00 2.45
6484 7063 5.190330 TCAGATCACAGGGAATCTTTCATGA 59.810 40.000 0.00 0.00 0.00 3.07
6489 7068 5.013495 TGAACTCAGATCACAGGGAATCTTT 59.987 40.000 0.00 0.00 0.00 2.52
6490 7069 4.533707 TGAACTCAGATCACAGGGAATCTT 59.466 41.667 0.00 0.00 0.00 2.40
6491 7070 4.099633 TGAACTCAGATCACAGGGAATCT 58.900 43.478 0.00 0.00 0.00 2.40
6492 7071 4.440880 CTGAACTCAGATCACAGGGAATC 58.559 47.826 0.03 0.00 46.59 2.52
6493 7072 4.484537 CTGAACTCAGATCACAGGGAAT 57.515 45.455 0.03 0.00 46.59 3.01
6494 7073 3.969287 CTGAACTCAGATCACAGGGAA 57.031 47.619 0.03 0.00 46.59 3.97
6507 7086 3.573967 TGGCCAAAGGAAATTCTGAACTC 59.426 43.478 0.61 0.00 0.00 3.01
6517 7096 7.661027 CAGAAATCTTTTAATGGCCAAAGGAAA 59.339 33.333 10.96 8.10 31.86 3.13
6519 7098 6.496565 TCAGAAATCTTTTAATGGCCAAAGGA 59.503 34.615 10.96 6.18 31.86 3.36
6548 7127 6.061441 TGAGCTGTTTCTGGTATTCTCAAAA 58.939 36.000 0.00 0.00 0.00 2.44
6549 7128 5.620206 TGAGCTGTTTCTGGTATTCTCAAA 58.380 37.500 0.00 0.00 0.00 2.69
6572 7151 7.873719 TTTCATTATATGTTCACGGGACATT 57.126 32.000 7.82 1.20 38.58 2.71
6599 7183 5.310594 TGGCTACTGAGGGAAGCATATATTT 59.689 40.000 6.15 0.00 38.01 1.40
6600 7184 4.846367 TGGCTACTGAGGGAAGCATATATT 59.154 41.667 6.15 0.00 38.01 1.28
6602 7186 3.578716 GTGGCTACTGAGGGAAGCATATA 59.421 47.826 6.15 0.00 38.01 0.86
6604 7188 1.762957 GTGGCTACTGAGGGAAGCATA 59.237 52.381 6.15 0.00 38.01 3.14
6607 7191 1.153549 CGTGGCTACTGAGGGAAGC 60.154 63.158 0.00 0.00 35.47 3.86
6611 7199 1.550130 TTTCCCGTGGCTACTGAGGG 61.550 60.000 5.44 5.44 43.32 4.30
6613 7201 2.403252 AATTTCCCGTGGCTACTGAG 57.597 50.000 0.00 0.00 0.00 3.35
6625 7213 3.091545 TCTGTGATCCTGCAAATTTCCC 58.908 45.455 0.00 0.00 0.00 3.97
6626 7214 3.507233 TGTCTGTGATCCTGCAAATTTCC 59.493 43.478 0.00 0.00 0.00 3.13
6646 7235 1.831106 TCTCTCTGTGTGTGGTTGTGT 59.169 47.619 0.00 0.00 0.00 3.72
6649 7238 2.159043 ACTGTCTCTCTGTGTGTGGTTG 60.159 50.000 0.00 0.00 0.00 3.77
6673 7262 4.806640 TTGTGCATACTCTGATGACTGA 57.193 40.909 0.00 0.00 0.00 3.41
6703 7352 0.749454 GTGTGGATGGGAGATGTGCC 60.749 60.000 0.00 0.00 33.79 5.01
6704 7353 0.035152 TGTGTGGATGGGAGATGTGC 60.035 55.000 0.00 0.00 0.00 4.57
6711 7360 4.682563 ACCATTTATTTGTGTGGATGGGA 58.317 39.130 5.31 0.00 38.63 4.37
6727 7376 2.365293 GGTTCCAGTGCAGAAACCATTT 59.635 45.455 12.29 0.00 0.00 2.32
6736 7385 1.102809 TGCTGTTGGTTCCAGTGCAG 61.103 55.000 12.30 12.30 32.41 4.41
6745 7394 1.329171 TGGCTTGCTTGCTGTTGGTT 61.329 50.000 1.96 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.