Multiple sequence alignment - TraesCS7B01G502000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G502000 chr7B 100.000 3270 0 0 1 3270 750571689 750568420 0.000000e+00 6039.0
1 TraesCS7B01G502000 chr7B 90.586 2337 136 34 1 2271 741998610 742000928 0.000000e+00 3020.0
2 TraesCS7B01G502000 chr7B 90.867 646 29 4 94 713 741994207 741994848 0.000000e+00 839.0
3 TraesCS7B01G502000 chr7B 88.435 147 6 3 870 1010 741999369 741999510 2.020000e-37 167.0
4 TraesCS7B01G502000 chr7B 80.189 212 19 11 2398 2588 742000985 742001194 1.580000e-28 137.0
5 TraesCS7B01G502000 chr7A 91.120 2331 121 22 1 2271 732589578 732587274 0.000000e+00 3079.0
6 TraesCS7B01G502000 chr7A 81.296 679 52 28 2609 3270 732586943 732586323 6.350000e-132 481.0
7 TraesCS7B01G502000 chr7A 92.199 141 3 3 870 1010 732588826 732588694 3.330000e-45 193.0
8 TraesCS7B01G502000 chr7A 89.781 137 10 2 738 870 732588694 732588558 4.340000e-39 172.0
9 TraesCS7B01G502000 chr7D 90.621 2335 126 24 1 2271 633872932 633875237 0.000000e+00 3013.0
10 TraesCS7B01G502000 chr7D 80.987 689 65 25 2609 3270 633875571 633876220 1.360000e-133 486.0
11 TraesCS7B01G502000 chr7D 91.971 137 7 2 738 870 633873833 633873969 4.310000e-44 189.0
12 TraesCS7B01G502000 chr7D 80.184 217 17 14 2398 2588 633875294 633875510 4.400000e-29 139.0
13 TraesCS7B01G502000 chrUn 91.194 1658 98 16 649 2271 308271442 308273086 0.000000e+00 2209.0
14 TraesCS7B01G502000 chrUn 95.045 444 19 2 1 441 88895842 88895399 0.000000e+00 695.0
15 TraesCS7B01G502000 chrUn 94.430 395 20 1 36 428 308271050 308271444 1.000000e-169 606.0
16 TraesCS7B01G502000 chrUn 82.074 675 62 14 2609 3270 308273374 308274002 3.740000e-144 521.0
17 TraesCS7B01G502000 chrUn 91.241 137 8 2 738 870 308271675 308271811 2.000000e-42 183.0
18 TraesCS7B01G502000 chrUn 81.325 166 7 11 582 723 88895394 88895229 2.670000e-21 113.0
19 TraesCS7B01G502000 chrUn 83.200 125 6 6 2398 2507 308273143 308273267 2.080000e-17 100.0
20 TraesCS7B01G502000 chr5D 97.059 34 1 0 2312 2345 3034234 3034201 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G502000 chr7B 750568420 750571689 3269 True 6039.00 6039 100.00000 1 3270 1 chr7B.!!$R1 3269
1 TraesCS7B01G502000 chr7B 741994207 742001194 6987 False 1040.75 3020 87.51925 1 2588 4 chr7B.!!$F1 2587
2 TraesCS7B01G502000 chr7A 732586323 732589578 3255 True 981.25 3079 88.59900 1 3270 4 chr7A.!!$R1 3269
3 TraesCS7B01G502000 chr7D 633872932 633876220 3288 False 956.75 3013 85.94075 1 3270 4 chr7D.!!$F1 3269
4 TraesCS7B01G502000 chrUn 308271050 308274002 2952 False 723.80 2209 88.42780 36 3270 5 chrUn.!!$F1 3234
5 TraesCS7B01G502000 chrUn 88895229 88895842 613 True 404.00 695 88.18500 1 723 2 chrUn.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 4711 0.323725 TTGGATTGGCAAGAGGAGGC 60.324 55.0 5.96 0.0 0.0 4.70 F
1548 6021 0.250166 GGCCGACCTGTTGTAAGTGT 60.250 55.0 0.00 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 6298 0.038166 GGATCACCCACTTGAAGGCA 59.962 55.0 0.0 0.0 34.14 4.75 R
3047 7685 0.029989 GGTCCACCTATCTTCCCCCT 60.030 60.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 4532 6.902974 AGGGGTTAATAATGAAAGAGCCATTT 59.097 34.615 0.00 0.00 35.94 2.32
202 4619 3.150731 CGTTCGATAAAAGTTCGGCAAC 58.849 45.455 0.00 0.00 37.22 4.17
224 4641 0.691904 AGAGAAGCTTGCAAGAGCCT 59.308 50.000 30.39 20.27 43.74 4.58
294 4711 0.323725 TTGGATTGGCAAGAGGAGGC 60.324 55.000 5.96 0.00 0.00 4.70
358 4775 8.144862 TGAATAAGGTATTGCTTTCCCATTTT 57.855 30.769 0.00 0.00 0.00 1.82
598 5020 9.681062 TTAAACTATAAGAACTTGGAGGGAATG 57.319 33.333 0.00 0.00 0.00 2.67
701 5147 5.116882 AGAAGATATAGTGTTTTCGGTGGC 58.883 41.667 0.00 0.00 0.00 5.01
770 5216 1.624336 AGACAGCACACCAATTGCAT 58.376 45.000 0.00 0.00 42.83 3.96
780 5232 1.355381 ACCAATTGCATGAGGAGGACA 59.645 47.619 0.00 0.00 0.00 4.02
806 5258 1.745653 CAGTAGTGAGATCTGTCGCCA 59.254 52.381 0.00 0.00 0.00 5.69
828 5284 3.973973 AGGCCTCTATAAATGGCTGTACA 59.026 43.478 0.00 0.00 45.45 2.90
856 5318 5.538813 AGGTAGCTAAACATCATCCGTATCA 59.461 40.000 0.00 0.00 0.00 2.15
932 5394 5.242069 ACGTCAATCAGTAGTGAGATCTG 57.758 43.478 0.00 1.62 35.66 2.90
950 5412 4.574271 TCGATCGCCGGGCCTCTA 62.574 66.667 14.55 0.00 39.14 2.43
951 5413 3.374402 CGATCGCCGGGCCTCTAT 61.374 66.667 14.55 1.80 33.91 1.98
952 5414 2.044555 CGATCGCCGGGCCTCTATA 61.045 63.158 14.55 0.00 33.91 1.31
1471 5944 1.537814 TACCAATCTGACGGCGGTGT 61.538 55.000 13.24 0.00 0.00 4.16
1522 5995 1.300931 GTCGTCACAGCAGCCAAGA 60.301 57.895 0.00 0.00 0.00 3.02
1531 6004 0.969409 AGCAGCCAAGAATCAAGGGC 60.969 55.000 0.00 0.00 46.77 5.19
1533 6006 3.200522 GCCAAGAATCAAGGGCCG 58.799 61.111 0.00 0.00 40.55 6.13
1534 6007 1.378514 GCCAAGAATCAAGGGCCGA 60.379 57.895 0.00 0.00 40.55 5.54
1547 6020 0.953960 GGGCCGACCTGTTGTAAGTG 60.954 60.000 0.00 0.00 35.85 3.16
1548 6021 0.250166 GGCCGACCTGTTGTAAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
1553 6026 3.306088 CCGACCTGTTGTAAGTGTCATCT 60.306 47.826 0.00 0.00 0.00 2.90
1554 6027 4.307432 CGACCTGTTGTAAGTGTCATCTT 58.693 43.478 0.00 0.00 0.00 2.40
1555 6028 5.466819 CGACCTGTTGTAAGTGTCATCTTA 58.533 41.667 0.00 0.00 0.00 2.10
1556 6029 5.345202 CGACCTGTTGTAAGTGTCATCTTAC 59.655 44.000 13.83 13.83 45.59 2.34
1629 6119 6.038603 TCCATTGATGCAATTAGCTAAGTGTC 59.961 38.462 28.73 21.23 45.94 3.67
1630 6120 6.183360 CCATTGATGCAATTAGCTAAGTGTCA 60.183 38.462 28.73 25.72 45.94 3.58
1631 6121 7.423199 CATTGATGCAATTAGCTAAGTGTCAT 58.577 34.615 27.80 27.80 45.94 3.06
1632 6122 6.609237 TGATGCAATTAGCTAAGTGTCATC 57.391 37.500 34.14 34.14 45.94 2.92
1634 6124 6.825213 TGATGCAATTAGCTAAGTGTCATCTT 59.175 34.615 36.39 23.17 45.94 2.40
1635 6125 7.337689 TGATGCAATTAGCTAAGTGTCATCTTT 59.662 33.333 36.39 22.96 45.94 2.52
1636 6126 7.076842 TGCAATTAGCTAAGTGTCATCTTTC 57.923 36.000 28.73 14.01 45.94 2.62
1637 6127 6.881065 TGCAATTAGCTAAGTGTCATCTTTCT 59.119 34.615 28.73 0.00 45.94 2.52
1760 6260 1.673477 CAGCAGCTGGTGGACTGTA 59.327 57.895 33.27 0.00 39.67 2.74
1762 6262 1.743252 GCAGCTGGTGGACTGTAGC 60.743 63.158 17.12 0.00 36.26 3.58
1764 6264 0.671781 CAGCTGGTGGACTGTAGCAC 60.672 60.000 5.57 0.00 38.59 4.40
1767 6267 1.275291 GCTGGTGGACTGTAGCACTAA 59.725 52.381 0.00 0.00 36.24 2.24
1768 6268 2.289444 GCTGGTGGACTGTAGCACTAAA 60.289 50.000 0.00 0.00 36.24 1.85
1769 6269 3.619979 GCTGGTGGACTGTAGCACTAAAT 60.620 47.826 0.00 0.00 36.24 1.40
1798 6298 1.748879 CGGCGGTTGGATGGACAAT 60.749 57.895 0.00 0.00 32.24 2.71
1805 6305 2.170166 GTTGGATGGACAATGCCTTCA 58.830 47.619 10.12 0.00 34.65 3.02
1825 6325 2.668632 TGGGTGATCCAGAACGGC 59.331 61.111 0.00 0.00 41.46 5.68
1864 6364 1.342672 CCTACCCCTACACCGGCAAT 61.343 60.000 0.00 0.00 0.00 3.56
1866 6366 2.260088 TACCCCTACACCGGCAATGC 62.260 60.000 0.00 0.00 0.00 3.56
1867 6367 2.045438 CCCTACACCGGCAATGCA 60.045 61.111 7.79 0.00 0.00 3.96
1909 6409 3.482783 GTCGCGGTGAAGCTCAGC 61.483 66.667 6.13 0.00 41.16 4.26
1910 6410 3.989787 TCGCGGTGAAGCTCAGCA 61.990 61.111 6.13 0.00 44.51 4.41
2081 6581 3.121406 TACACCAAAGGGGCGTGCA 62.121 57.895 0.00 0.00 42.05 4.57
2082 6582 2.626255 TACACCAAAGGGGCGTGCAA 62.626 55.000 0.00 0.00 42.05 4.08
2174 6674 2.295349 GGTAAGAACTCGTGGACTGACA 59.705 50.000 0.00 0.00 0.00 3.58
2195 6695 0.467290 GTGGGGTGACAAAGGCTTCA 60.467 55.000 0.00 0.00 0.00 3.02
2201 6701 3.629398 GGGTGACAAAGGCTTCATCTATG 59.371 47.826 0.00 0.00 0.00 2.23
2233 6733 4.974721 CCGCCCTTGGGCTTGTGT 62.975 66.667 25.99 0.00 0.00 3.72
2242 6742 4.347453 GGCTTGTGTGGCCTTGCG 62.347 66.667 3.32 0.00 45.57 4.85
2243 6743 4.347453 GCTTGTGTGGCCTTGCGG 62.347 66.667 3.32 0.00 0.00 5.69
2261 6761 2.396157 GCGCTCCCGTTTTACCCTG 61.396 63.158 0.00 0.00 36.67 4.45
2271 6771 3.871594 CCGTTTTACCCTGTCATCTGATC 59.128 47.826 0.00 0.00 0.00 2.92
2272 6772 4.383118 CCGTTTTACCCTGTCATCTGATCT 60.383 45.833 0.00 0.00 0.00 2.75
2273 6773 4.568359 CGTTTTACCCTGTCATCTGATCTG 59.432 45.833 0.00 0.00 0.00 2.90
2274 6774 5.624509 CGTTTTACCCTGTCATCTGATCTGA 60.625 44.000 4.63 4.63 0.00 3.27
2275 6775 6.352516 GTTTTACCCTGTCATCTGATCTGAT 58.647 40.000 9.15 9.15 0.00 2.90
2282 6792 4.544683 TGTCATCTGATCTGATCACCTCT 58.455 43.478 16.06 0.00 35.06 3.69
2291 6801 5.185442 TGATCTGATCACCTCTATCATCTGC 59.815 44.000 16.06 0.00 33.08 4.26
2298 6808 2.760650 ACCTCTATCATCTGCGTGTGAA 59.239 45.455 0.00 0.00 0.00 3.18
2308 6818 0.390472 TGCGTGTGAATCCGTGCATA 60.390 50.000 0.00 0.00 0.00 3.14
2309 6819 0.026285 GCGTGTGAATCCGTGCATAC 59.974 55.000 0.00 0.00 0.00 2.39
2310 6820 1.640428 CGTGTGAATCCGTGCATACT 58.360 50.000 0.00 0.00 0.00 2.12
2313 6823 3.802139 CGTGTGAATCCGTGCATACTTAT 59.198 43.478 0.00 0.00 0.00 1.73
2314 6824 4.979815 CGTGTGAATCCGTGCATACTTATA 59.020 41.667 0.00 0.00 0.00 0.98
2317 6827 7.201325 CGTGTGAATCCGTGCATACTTATATAC 60.201 40.741 0.00 0.00 0.00 1.47
2318 6828 7.813148 GTGTGAATCCGTGCATACTTATATACT 59.187 37.037 0.00 0.00 0.00 2.12
2319 6829 8.364894 TGTGAATCCGTGCATACTTATATACTT 58.635 33.333 0.00 0.00 0.00 2.24
2320 6830 8.861101 GTGAATCCGTGCATACTTATATACTTC 58.139 37.037 0.00 0.00 0.00 3.01
2321 6831 8.033038 TGAATCCGTGCATACTTATATACTTCC 58.967 37.037 0.00 0.00 0.00 3.46
2322 6832 7.719871 ATCCGTGCATACTTATATACTTCCT 57.280 36.000 0.00 0.00 0.00 3.36
2323 6833 7.154435 TCCGTGCATACTTATATACTTCCTC 57.846 40.000 0.00 0.00 0.00 3.71
2324 6834 6.946583 TCCGTGCATACTTATATACTTCCTCT 59.053 38.462 0.00 0.00 0.00 3.69
2325 6835 7.030165 CCGTGCATACTTATATACTTCCTCTG 58.970 42.308 0.00 0.00 0.00 3.35
2326 6836 7.309255 CCGTGCATACTTATATACTTCCTCTGT 60.309 40.741 0.00 0.00 0.00 3.41
2327 6837 8.727910 CGTGCATACTTATATACTTCCTCTGTA 58.272 37.037 0.00 0.00 0.00 2.74
2328 6838 9.843334 GTGCATACTTATATACTTCCTCTGTAC 57.157 37.037 0.00 0.00 0.00 2.90
2329 6839 9.021807 TGCATACTTATATACTTCCTCTGTACC 57.978 37.037 0.00 0.00 0.00 3.34
2330 6840 9.021807 GCATACTTATATACTTCCTCTGTACCA 57.978 37.037 0.00 0.00 0.00 3.25
2346 6856 9.273016 CCTCTGTACCATAATATTTGTAGTTGG 57.727 37.037 0.00 0.00 0.00 3.77
2347 6857 9.273016 CTCTGTACCATAATATTTGTAGTTGGG 57.727 37.037 0.00 0.00 0.00 4.12
2348 6858 8.215050 TCTGTACCATAATATTTGTAGTTGGGG 58.785 37.037 0.00 0.00 0.00 4.96
2349 6859 7.291566 TGTACCATAATATTTGTAGTTGGGGG 58.708 38.462 0.00 0.00 0.00 5.40
2350 6860 6.599986 ACCATAATATTTGTAGTTGGGGGA 57.400 37.500 0.00 0.00 0.00 4.81
2351 6861 6.987557 ACCATAATATTTGTAGTTGGGGGAA 58.012 36.000 0.00 0.00 0.00 3.97
2352 6862 6.837048 ACCATAATATTTGTAGTTGGGGGAAC 59.163 38.462 0.00 0.00 34.40 3.62
2354 6864 8.221944 CCATAATATTTGTAGTTGGGGGAACTA 58.778 37.037 0.00 0.00 43.54 2.24
2355 6865 9.284968 CATAATATTTGTAGTTGGGGGAACTAG 57.715 37.037 0.00 0.00 45.90 2.57
2356 6866 6.903340 ATATTTGTAGTTGGGGGAACTAGT 57.097 37.500 0.00 0.00 45.90 2.57
2357 6867 4.628963 TTTGTAGTTGGGGGAACTAGTC 57.371 45.455 0.00 0.00 45.90 2.59
2358 6868 3.555117 TGTAGTTGGGGGAACTAGTCT 57.445 47.619 0.00 0.00 45.90 3.24
2359 6869 4.680278 TGTAGTTGGGGGAACTAGTCTA 57.320 45.455 0.00 0.00 45.90 2.59
2360 6870 4.607239 TGTAGTTGGGGGAACTAGTCTAG 58.393 47.826 5.27 5.27 45.90 2.43
2361 6871 3.848978 AGTTGGGGGAACTAGTCTAGT 57.151 47.619 6.71 6.71 43.54 2.57
2374 6884 7.926674 AACTAGTCTAGTTCTCTCCAACTAC 57.073 40.000 17.91 0.00 45.38 2.73
2375 6885 7.018487 ACTAGTCTAGTTCTCTCCAACTACA 57.982 40.000 6.71 0.00 37.75 2.74
2376 6886 7.460071 ACTAGTCTAGTTCTCTCCAACTACAA 58.540 38.462 6.71 0.00 37.75 2.41
2377 6887 6.827586 AGTCTAGTTCTCTCCAACTACAAG 57.172 41.667 0.00 0.00 37.75 3.16
2378 6888 6.308566 AGTCTAGTTCTCTCCAACTACAAGT 58.691 40.000 0.00 0.00 37.75 3.16
2379 6889 7.460071 AGTCTAGTTCTCTCCAACTACAAGTA 58.540 38.462 0.00 0.00 37.75 2.24
2380 6890 8.110908 AGTCTAGTTCTCTCCAACTACAAGTAT 58.889 37.037 0.00 0.00 37.75 2.12
2381 6891 8.741841 GTCTAGTTCTCTCCAACTACAAGTATT 58.258 37.037 0.00 0.00 37.75 1.89
2382 6892 9.310449 TCTAGTTCTCTCCAACTACAAGTATTT 57.690 33.333 0.00 0.00 37.75 1.40
2385 6895 9.310449 AGTTCTCTCCAACTACAAGTATTTAGA 57.690 33.333 0.00 0.00 34.70 2.10
2437 6947 2.781681 AATTGCACGGTACCTAGCTT 57.218 45.000 21.37 9.55 0.00 3.74
2456 6966 4.757149 AGCTTTTCACTTGTGTACTCCATC 59.243 41.667 0.46 0.00 0.00 3.51
2475 6990 6.057533 TCCATCTCTATGCATGTAAAGGTTG 58.942 40.000 10.16 3.67 0.00 3.77
2558 7106 6.763303 AAAATTACAAATCGTCTTGGTTGC 57.237 33.333 4.66 0.00 0.00 4.17
2562 7110 2.033299 ACAAATCGTCTTGGTTGCTGTG 59.967 45.455 4.66 0.00 0.00 3.66
2599 7152 8.786826 TTTGCTATGCACCTATATAATACACC 57.213 34.615 0.00 0.00 38.71 4.16
2601 7154 7.555965 TGCTATGCACCTATATAATACACCAG 58.444 38.462 0.00 0.00 31.71 4.00
2602 7155 6.480320 GCTATGCACCTATATAATACACCAGC 59.520 42.308 0.00 0.00 0.00 4.85
2604 7157 5.793817 TGCACCTATATAATACACCAGCTG 58.206 41.667 6.78 6.78 0.00 4.24
2606 7159 6.495526 TGCACCTATATAATACACCAGCTGTA 59.504 38.462 13.81 0.00 39.78 2.74
2607 7160 7.036220 GCACCTATATAATACACCAGCTGTAG 58.964 42.308 13.81 7.04 38.80 2.74
2627 7220 2.576648 AGATTTGGGGTGGAGGAAGTAC 59.423 50.000 0.00 0.00 0.00 2.73
2678 7276 2.741878 GCACCAGCGGTACATGAACTAT 60.742 50.000 0.00 0.00 32.11 2.12
2685 7283 3.181479 GCGGTACATGAACTATGGAGTGA 60.181 47.826 0.00 0.00 41.25 3.41
2698 7304 2.956132 TGGAGTGATCTCTCATCTCCC 58.044 52.381 22.63 8.59 42.71 4.30
2700 7306 1.885887 GAGTGATCTCTCATCTCCCGG 59.114 57.143 17.81 0.00 37.68 5.73
2738 7344 5.475564 GTCCCTAAACTTGCTAATTGGTTCA 59.524 40.000 0.00 0.00 0.00 3.18
2762 7368 6.114187 TGTGACACTCAAATCTCCATAACT 57.886 37.500 7.20 0.00 0.00 2.24
2776 7394 6.480763 TCTCCATAACTCACCTTAAATTGCA 58.519 36.000 0.00 0.00 0.00 4.08
2781 7399 4.616181 ACTCACCTTAAATTGCATACGC 57.384 40.909 0.00 0.00 39.24 4.42
2782 7400 3.063452 ACTCACCTTAAATTGCATACGCG 59.937 43.478 3.53 3.53 42.97 6.01
2783 7401 3.004171 TCACCTTAAATTGCATACGCGT 58.996 40.909 19.17 19.17 42.97 6.01
2784 7402 3.062909 TCACCTTAAATTGCATACGCGTC 59.937 43.478 18.63 1.04 42.97 5.19
2785 7403 3.004171 ACCTTAAATTGCATACGCGTCA 58.996 40.909 18.63 4.61 42.97 4.35
2786 7404 3.625764 ACCTTAAATTGCATACGCGTCAT 59.374 39.130 18.63 5.08 42.97 3.06
2787 7405 4.095782 ACCTTAAATTGCATACGCGTCATT 59.904 37.500 18.63 4.83 42.97 2.57
2788 7406 4.670621 CCTTAAATTGCATACGCGTCATTC 59.329 41.667 18.63 4.20 42.97 2.67
2789 7407 5.478233 TTAAATTGCATACGCGTCATTCT 57.522 34.783 18.63 0.00 42.97 2.40
2790 7408 3.323729 AATTGCATACGCGTCATTCTG 57.676 42.857 18.63 8.17 42.97 3.02
2791 7409 2.003196 TTGCATACGCGTCATTCTGA 57.997 45.000 18.63 0.00 42.97 3.27
2792 7410 1.277326 TGCATACGCGTCATTCTGAC 58.723 50.000 18.63 0.00 43.65 3.51
2796 7414 0.172578 TACGCGTCATTCTGACTGGG 59.827 55.000 18.63 9.20 44.85 4.45
2804 7422 2.093288 TCATTCTGACTGGGATGCTGAC 60.093 50.000 0.00 0.00 0.00 3.51
2806 7424 0.900182 TCTGACTGGGATGCTGACGT 60.900 55.000 0.00 0.00 0.00 4.34
2817 7435 2.126307 CTGACGTGTGGAGCGGAG 60.126 66.667 0.00 0.00 0.00 4.63
2821 7439 2.202797 CGTGTGGAGCGGAGGATG 60.203 66.667 0.00 0.00 0.00 3.51
2846 7464 1.614824 CAAGAGAGGCAGGAGGGGT 60.615 63.158 0.00 0.00 0.00 4.95
2847 7465 0.325671 CAAGAGAGGCAGGAGGGGTA 60.326 60.000 0.00 0.00 0.00 3.69
2848 7466 0.417841 AAGAGAGGCAGGAGGGGTAA 59.582 55.000 0.00 0.00 0.00 2.85
2849 7467 0.031616 AGAGAGGCAGGAGGGGTAAG 60.032 60.000 0.00 0.00 0.00 2.34
2850 7468 1.003573 AGAGGCAGGAGGGGTAAGG 59.996 63.158 0.00 0.00 0.00 2.69
2851 7469 2.042930 AGGCAGGAGGGGTAAGGG 59.957 66.667 0.00 0.00 0.00 3.95
2852 7470 3.097162 GGCAGGAGGGGTAAGGGG 61.097 72.222 0.00 0.00 0.00 4.79
2853 7471 3.097162 GCAGGAGGGGTAAGGGGG 61.097 72.222 0.00 0.00 0.00 5.40
2854 7472 2.792222 CAGGAGGGGTAAGGGGGA 59.208 66.667 0.00 0.00 0.00 4.81
2855 7473 1.384643 CAGGAGGGGTAAGGGGGAG 60.385 68.421 0.00 0.00 0.00 4.30
2856 7474 2.039724 GGAGGGGTAAGGGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
2857 7475 2.792951 GAGGGGTAAGGGGGAGGT 59.207 66.667 0.00 0.00 0.00 3.85
2858 7476 1.693103 GAGGGGTAAGGGGGAGGTG 60.693 68.421 0.00 0.00 0.00 4.00
2859 7477 2.188947 AGGGGTAAGGGGGAGGTGA 61.189 63.158 0.00 0.00 0.00 4.02
2860 7478 1.005690 GGGGTAAGGGGGAGGTGAT 59.994 63.158 0.00 0.00 0.00 3.06
2861 7479 1.060743 GGGGTAAGGGGGAGGTGATC 61.061 65.000 0.00 0.00 0.00 2.92
2862 7480 1.408453 GGGTAAGGGGGAGGTGATCG 61.408 65.000 0.00 0.00 0.00 3.69
2863 7481 1.446366 GTAAGGGGGAGGTGATCGC 59.554 63.158 0.00 0.00 40.10 4.58
2864 7482 1.049289 GTAAGGGGGAGGTGATCGCT 61.049 60.000 6.18 0.00 40.63 4.93
2898 7518 0.817634 AGAGGATGAGAGCGGAGTCG 60.818 60.000 0.00 0.00 39.81 4.18
2925 7553 0.467384 CTCTGGTGGTGCTGATAGGG 59.533 60.000 0.00 0.00 0.00 3.53
2933 7561 1.381191 TGCTGATAGGGCGAGGTCA 60.381 57.895 0.00 0.00 0.00 4.02
2935 7563 1.109920 GCTGATAGGGCGAGGTCAGA 61.110 60.000 10.72 0.00 40.30 3.27
2965 7593 3.114616 CAGGGTGAGCTTGACGCG 61.115 66.667 3.53 3.53 45.59 6.01
2966 7594 3.616721 AGGGTGAGCTTGACGCGT 61.617 61.111 13.85 13.85 45.59 6.01
3042 7680 7.502696 AGATCATTTGAGAGAAATGGAGAGAG 58.497 38.462 7.17 0.00 38.00 3.20
3043 7681 6.864151 TCATTTGAGAGAAATGGAGAGAGA 57.136 37.500 7.17 0.00 38.00 3.10
3044 7682 6.876155 TCATTTGAGAGAAATGGAGAGAGAG 58.124 40.000 7.17 0.00 38.00 3.20
3045 7683 5.674052 TTTGAGAGAAATGGAGAGAGAGG 57.326 43.478 0.00 0.00 0.00 3.69
3046 7684 4.599720 TGAGAGAAATGGAGAGAGAGGA 57.400 45.455 0.00 0.00 0.00 3.71
3047 7685 4.940483 TGAGAGAAATGGAGAGAGAGGAA 58.060 43.478 0.00 0.00 0.00 3.36
3048 7686 4.955450 TGAGAGAAATGGAGAGAGAGGAAG 59.045 45.833 0.00 0.00 0.00 3.46
3049 7687 4.289245 AGAGAAATGGAGAGAGAGGAAGG 58.711 47.826 0.00 0.00 0.00 3.46
3050 7688 3.383223 AGAAATGGAGAGAGAGGAAGGG 58.617 50.000 0.00 0.00 0.00 3.95
3051 7689 2.188818 AATGGAGAGAGAGGAAGGGG 57.811 55.000 0.00 0.00 0.00 4.79
3077 7725 0.473694 AGGTGGACCTGACATGTGGA 60.474 55.000 1.15 0.00 46.55 4.02
3079 7727 0.670546 GTGGACCTGACATGTGGACG 60.671 60.000 1.15 0.00 0.00 4.79
3080 7728 1.118965 TGGACCTGACATGTGGACGT 61.119 55.000 1.15 0.00 0.00 4.34
3082 7730 0.317160 GACCTGACATGTGGACGTCA 59.683 55.000 18.91 0.00 39.77 4.35
3083 7731 0.756294 ACCTGACATGTGGACGTCAA 59.244 50.000 18.91 2.10 41.39 3.18
3084 7732 1.148310 CCTGACATGTGGACGTCAAC 58.852 55.000 16.53 16.53 41.39 3.18
3085 7733 1.540146 CCTGACATGTGGACGTCAACA 60.540 52.381 27.27 27.27 41.39 3.33
3086 7734 1.526887 CTGACATGTGGACGTCAACAC 59.473 52.381 27.62 20.87 41.39 3.32
3090 7738 3.058115 TGTGGACGTCAACACACAG 57.942 52.632 21.95 0.00 42.20 3.66
3091 7739 0.248012 TGTGGACGTCAACACACAGT 59.752 50.000 21.95 0.00 42.20 3.55
3092 7740 0.928229 GTGGACGTCAACACACAGTC 59.072 55.000 18.41 0.00 37.54 3.51
3093 7741 0.533032 TGGACGTCAACACACAGTCA 59.467 50.000 18.91 0.00 33.84 3.41
3094 7742 1.066787 TGGACGTCAACACACAGTCAA 60.067 47.619 18.91 0.00 33.84 3.18
3095 7743 1.326548 GGACGTCAACACACAGTCAAC 59.673 52.381 18.91 0.00 33.84 3.18
3096 7744 1.996898 GACGTCAACACACAGTCAACA 59.003 47.619 11.55 0.00 32.57 3.33
3102 7750 4.036734 GTCAACACACAGTCAACATTCCAT 59.963 41.667 0.00 0.00 0.00 3.41
3129 7777 6.611613 TGCCATTTAACATGGGTTATGAAA 57.388 33.333 14.57 0.00 39.15 2.69
3177 7825 8.190784 CCATAAGCAAGTTTAGGGACTTAAATG 58.809 37.037 1.79 0.00 41.75 2.32
3178 7826 5.644977 AGCAAGTTTAGGGACTTAAATGC 57.355 39.130 5.07 5.07 40.18 3.56
3179 7827 5.076873 AGCAAGTTTAGGGACTTAAATGCA 58.923 37.500 12.14 0.00 41.38 3.96
3196 7844 0.958822 GCACATTTTGGGAGTTCGGT 59.041 50.000 0.00 0.00 0.00 4.69
3207 7855 2.629051 GGAGTTCGGTGACCTAAATGG 58.371 52.381 0.00 0.00 42.93 3.16
3213 7861 1.369625 GGTGACCTAAATGGCACTCG 58.630 55.000 0.00 0.00 40.36 4.18
3221 7869 2.128771 AAATGGCACTCGCTACCAAT 57.871 45.000 0.00 0.00 36.94 3.16
3225 7873 1.003118 TGGCACTCGCTACCAATTTCT 59.997 47.619 0.00 0.00 38.60 2.52
3231 7879 4.929808 CACTCGCTACCAATTTCTTGTACT 59.070 41.667 0.00 0.00 0.00 2.73
3255 7903 6.326375 TGCCCGTGCATTTTACTTTTTATAG 58.674 36.000 0.00 0.00 44.23 1.31
3256 7904 5.231357 GCCCGTGCATTTTACTTTTTATAGC 59.769 40.000 0.00 0.00 37.47 2.97
3257 7905 5.746721 CCCGTGCATTTTACTTTTTATAGCC 59.253 40.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 4469 0.462047 CTACCGCTTCCGCTCCAATT 60.462 55.000 0.00 0.00 0.00 2.32
119 4532 1.410882 TCATTGTATCACGCGGGATCA 59.589 47.619 30.07 21.70 0.00 2.92
202 4619 1.357907 CTCTTGCAAGCTTCTCTCCG 58.642 55.000 21.99 0.00 0.00 4.63
224 4641 2.305927 GAGGTTGGATCTTGGGAGTTCA 59.694 50.000 0.00 0.00 0.00 3.18
294 4711 1.247567 ACACCTGAATTTTGCTCCGG 58.752 50.000 0.00 0.00 0.00 5.14
363 4780 9.057089 CACTTGTTGGTTTATCTTCTTCTACTT 57.943 33.333 0.00 0.00 0.00 2.24
598 5020 4.399303 ACACCAGCCATTTATAAGTGCTTC 59.601 41.667 2.54 0.00 0.00 3.86
701 5147 6.321848 TCATATCACATGCTGGCAAATAAG 57.678 37.500 0.00 0.00 0.00 1.73
770 5216 4.403752 CACTACTGATTGATGTCCTCCTCA 59.596 45.833 0.00 0.00 0.00 3.86
780 5232 5.507149 GCGACAGATCTCACTACTGATTGAT 60.507 44.000 0.00 0.00 35.85 2.57
828 5284 4.876107 CGGATGATGTTTAGCTACCTTTGT 59.124 41.667 0.00 0.00 0.00 2.83
876 5338 1.021202 TGGTGTGCTGTCTTTTTCCG 58.979 50.000 0.00 0.00 0.00 4.30
949 5411 8.896658 ACCTTTGGGTACAGCCATTTATATATA 58.103 33.333 0.13 0.00 45.32 0.86
950 5412 7.765622 ACCTTTGGGTACAGCCATTTATATAT 58.234 34.615 0.13 0.00 45.32 0.86
951 5413 7.156694 ACCTTTGGGTACAGCCATTTATATA 57.843 36.000 0.13 0.00 45.32 0.86
952 5414 6.025793 ACCTTTGGGTACAGCCATTTATAT 57.974 37.500 0.13 0.00 45.32 0.86
1471 5944 3.899981 AATCCACGCTCGCAGGCAA 62.900 57.895 0.00 0.00 0.00 4.52
1522 5995 0.609131 CAACAGGTCGGCCCTTGATT 60.609 55.000 0.08 0.00 42.73 2.57
1531 6004 2.519377 TGACACTTACAACAGGTCGG 57.481 50.000 0.00 0.00 0.00 4.79
1532 6005 3.914312 AGATGACACTTACAACAGGTCG 58.086 45.455 0.00 0.00 0.00 4.79
1533 6006 6.707599 GTAAGATGACACTTACAACAGGTC 57.292 41.667 16.49 0.00 46.39 3.85
1553 6026 9.887629 ATGCATGATTTATTTTGGATGTTGTAA 57.112 25.926 0.00 0.00 0.00 2.41
1554 6027 9.315525 CATGCATGATTTATTTTGGATGTTGTA 57.684 29.630 22.59 0.00 34.43 2.41
1555 6028 7.201661 GCATGCATGATTTATTTTGGATGTTGT 60.202 33.333 30.64 0.00 39.32 3.32
1556 6029 7.129622 GCATGCATGATTTATTTTGGATGTTG 58.870 34.615 30.64 0.00 39.32 3.33
1557 6030 6.018588 CGCATGCATGATTTATTTTGGATGTT 60.019 34.615 30.64 0.00 39.32 2.71
1558 6031 5.464057 CGCATGCATGATTTATTTTGGATGT 59.536 36.000 30.64 0.00 39.32 3.06
1629 6119 1.659098 GGCGGACACGTAAGAAAGATG 59.341 52.381 0.00 0.00 43.45 2.90
1630 6120 1.734707 CGGCGGACACGTAAGAAAGAT 60.735 52.381 0.00 0.00 43.45 2.40
1631 6121 0.387622 CGGCGGACACGTAAGAAAGA 60.388 55.000 0.00 0.00 43.45 2.52
1632 6122 0.665369 ACGGCGGACACGTAAGAAAG 60.665 55.000 13.24 0.00 43.60 2.62
1634 6124 1.372004 CACGGCGGACACGTAAGAA 60.372 57.895 13.24 0.00 43.58 2.52
1635 6125 2.256158 CACGGCGGACACGTAAGA 59.744 61.111 13.24 0.00 43.58 2.10
1636 6126 3.475774 GCACGGCGGACACGTAAG 61.476 66.667 13.24 0.00 43.58 2.34
1637 6127 4.281947 TGCACGGCGGACACGTAA 62.282 61.111 13.24 0.00 43.58 3.18
1760 6260 0.810031 CCGCAGCCGTATTTAGTGCT 60.810 55.000 0.00 0.00 31.74 4.40
1762 6262 1.641677 GCCGCAGCCGTATTTAGTG 59.358 57.895 0.00 0.00 0.00 2.74
1764 6264 2.594962 CCGCCGCAGCCGTATTTAG 61.595 63.158 0.00 0.00 34.57 1.85
1781 6281 1.809207 CATTGTCCATCCAACCGCC 59.191 57.895 0.00 0.00 0.00 6.13
1782 6282 1.139520 GCATTGTCCATCCAACCGC 59.860 57.895 0.00 0.00 0.00 5.68
1784 6284 1.478105 GAAGGCATTGTCCATCCAACC 59.522 52.381 0.00 0.00 0.00 3.77
1798 6298 0.038166 GGATCACCCACTTGAAGGCA 59.962 55.000 0.00 0.00 34.14 4.75
1805 6305 0.324943 CCGTTCTGGATCACCCACTT 59.675 55.000 0.00 0.00 40.82 3.16
1983 6483 3.285484 GGGTCACTGTAGTCGAAGGATA 58.715 50.000 0.00 0.00 0.00 2.59
2081 6581 2.665185 GTGGTTCTGCGCCGTCTT 60.665 61.111 4.18 0.00 0.00 3.01
2174 6674 0.261696 AAGCCTTTGTCACCCCACTT 59.738 50.000 0.00 0.00 0.00 3.16
2242 6742 3.129502 GGGTAAAACGGGAGCGCC 61.130 66.667 2.29 0.00 0.00 6.53
2243 6743 2.046604 AGGGTAAAACGGGAGCGC 60.047 61.111 0.00 0.00 0.00 5.92
2244 6744 1.004200 ACAGGGTAAAACGGGAGCG 60.004 57.895 0.00 0.00 0.00 5.03
2246 6746 2.236395 AGATGACAGGGTAAAACGGGAG 59.764 50.000 0.00 0.00 0.00 4.30
2247 6747 2.027561 CAGATGACAGGGTAAAACGGGA 60.028 50.000 0.00 0.00 0.00 5.14
2252 6752 6.156775 TGATCAGATCAGATGACAGGGTAAAA 59.843 38.462 9.21 0.00 33.59 1.52
2261 6761 6.433716 TGATAGAGGTGATCAGATCAGATGAC 59.566 42.308 13.78 7.23 40.53 3.06
2271 6771 3.255395 ACGCAGATGATAGAGGTGATCAG 59.745 47.826 0.00 0.00 36.77 2.90
2272 6772 3.005155 CACGCAGATGATAGAGGTGATCA 59.995 47.826 0.00 0.00 37.70 2.92
2273 6773 3.005261 ACACGCAGATGATAGAGGTGATC 59.995 47.826 0.00 0.00 0.00 2.92
2274 6774 2.961741 ACACGCAGATGATAGAGGTGAT 59.038 45.455 0.00 0.00 0.00 3.06
2275 6775 2.099756 CACACGCAGATGATAGAGGTGA 59.900 50.000 0.00 0.00 0.00 4.02
2282 6792 2.100749 ACGGATTCACACGCAGATGATA 59.899 45.455 0.00 0.00 0.00 2.15
2291 6801 1.640428 AGTATGCACGGATTCACACG 58.360 50.000 0.00 0.00 0.00 4.49
2298 6808 7.616150 AGAGGAAGTATATAAGTATGCACGGAT 59.384 37.037 0.00 0.00 0.00 4.18
2325 6835 7.519927 TCCCCCAACTACAAATATTATGGTAC 58.480 38.462 0.00 0.00 0.00 3.34
2326 6836 7.709024 TCCCCCAACTACAAATATTATGGTA 57.291 36.000 0.00 0.00 0.00 3.25
2327 6837 6.599986 TCCCCCAACTACAAATATTATGGT 57.400 37.500 0.00 0.00 0.00 3.55
2328 6838 7.066781 AGTTCCCCCAACTACAAATATTATGG 58.933 38.462 0.00 0.00 44.13 2.74
2329 6839 9.284968 CTAGTTCCCCCAACTACAAATATTATG 57.715 37.037 0.00 0.00 44.13 1.90
2330 6840 9.010767 ACTAGTTCCCCCAACTACAAATATTAT 57.989 33.333 0.00 0.00 44.13 1.28
2331 6841 8.396619 ACTAGTTCCCCCAACTACAAATATTA 57.603 34.615 0.00 0.00 44.13 0.98
2332 6842 7.184022 AGACTAGTTCCCCCAACTACAAATATT 59.816 37.037 0.00 0.00 44.13 1.28
2333 6843 6.677076 AGACTAGTTCCCCCAACTACAAATAT 59.323 38.462 0.00 0.00 44.13 1.28
2334 6844 6.027482 AGACTAGTTCCCCCAACTACAAATA 58.973 40.000 0.00 0.00 44.13 1.40
2335 6845 4.850386 AGACTAGTTCCCCCAACTACAAAT 59.150 41.667 0.00 0.00 44.13 2.32
2336 6846 4.237018 AGACTAGTTCCCCCAACTACAAA 58.763 43.478 0.00 0.00 44.13 2.83
2337 6847 3.865571 AGACTAGTTCCCCCAACTACAA 58.134 45.455 0.00 0.00 44.13 2.41
2338 6848 3.555117 AGACTAGTTCCCCCAACTACA 57.445 47.619 0.00 0.00 44.13 2.74
2339 6849 4.608269 ACTAGACTAGTTCCCCCAACTAC 58.392 47.826 9.45 0.00 44.13 2.73
2340 6850 4.961440 ACTAGACTAGTTCCCCCAACTA 57.039 45.455 9.45 0.00 44.13 2.24
2341 6851 4.143406 AACTAGACTAGTTCCCCCAACT 57.857 45.455 20.07 0.00 45.38 3.16
2351 6861 7.018487 TGTAGTTGGAGAGAACTAGACTAGT 57.982 40.000 9.45 9.45 38.75 2.57
2352 6862 7.608761 ACTTGTAGTTGGAGAGAACTAGACTAG 59.391 40.741 8.00 8.00 38.75 2.57
2353 6863 7.460071 ACTTGTAGTTGGAGAGAACTAGACTA 58.540 38.462 0.00 0.00 38.75 2.59
2354 6864 6.308566 ACTTGTAGTTGGAGAGAACTAGACT 58.691 40.000 0.00 0.00 38.75 3.24
2355 6865 6.578163 ACTTGTAGTTGGAGAGAACTAGAC 57.422 41.667 0.00 0.00 38.75 2.59
2356 6866 8.880991 AATACTTGTAGTTGGAGAGAACTAGA 57.119 34.615 0.00 0.00 38.75 2.43
2359 6869 9.310449 TCTAAATACTTGTAGTTGGAGAGAACT 57.690 33.333 3.59 0.00 39.54 3.01
2406 6916 8.691797 AGGTACCGTGCAATTATTCATTATTTT 58.308 29.630 6.18 0.00 0.00 1.82
2408 6918 7.817418 AGGTACCGTGCAATTATTCATTATT 57.183 32.000 6.18 0.00 0.00 1.40
2409 6919 7.119262 GCTAGGTACCGTGCAATTATTCATTAT 59.881 37.037 21.70 0.00 0.00 1.28
2437 6947 5.808366 AGAGATGGAGTACACAAGTGAAA 57.192 39.130 7.28 0.00 0.00 2.69
2456 6966 3.885297 CCCCAACCTTTACATGCATAGAG 59.115 47.826 0.00 0.00 0.00 2.43
2508 7037 3.957497 AGAAGGAGTAGCATGTACTGGAG 59.043 47.826 11.22 0.00 0.00 3.86
2509 7038 3.982516 AGAAGGAGTAGCATGTACTGGA 58.017 45.455 11.22 0.00 0.00 3.86
2510 7039 4.744795 AAGAAGGAGTAGCATGTACTGG 57.255 45.455 11.22 0.00 0.00 4.00
2511 7040 8.547967 TTAAAAAGAAGGAGTAGCATGTACTG 57.452 34.615 11.22 0.00 0.00 2.74
2512 7041 9.569122 TTTTAAAAAGAAGGAGTAGCATGTACT 57.431 29.630 0.00 7.43 0.00 2.73
2542 7079 2.605338 CCACAGCAACCAAGACGATTTG 60.605 50.000 0.00 0.00 0.00 2.32
2550 7098 3.181493 GCTATGAATCCACAGCAACCAAG 60.181 47.826 0.00 0.00 42.20 3.61
2554 7102 4.708726 AAAGCTATGAATCCACAGCAAC 57.291 40.909 0.00 0.00 44.92 4.17
2557 7105 3.129988 AGCAAAAGCTATGAATCCACAGC 59.870 43.478 3.72 0.00 42.92 4.40
2558 7106 4.978083 AGCAAAAGCTATGAATCCACAG 57.022 40.909 3.72 0.00 0.00 3.66
2598 7151 1.683011 CCACCCCAAATCTACAGCTGG 60.683 57.143 19.93 0.36 0.00 4.85
2599 7152 1.281867 TCCACCCCAAATCTACAGCTG 59.718 52.381 13.48 13.48 0.00 4.24
2601 7154 1.408822 CCTCCACCCCAAATCTACAGC 60.409 57.143 0.00 0.00 0.00 4.40
2602 7155 2.196595 TCCTCCACCCCAAATCTACAG 58.803 52.381 0.00 0.00 0.00 2.74
2604 7157 2.576648 ACTTCCTCCACCCCAAATCTAC 59.423 50.000 0.00 0.00 0.00 2.59
2606 7159 1.760405 ACTTCCTCCACCCCAAATCT 58.240 50.000 0.00 0.00 0.00 2.40
2607 7160 2.356844 GGTACTTCCTCCACCCCAAATC 60.357 54.545 0.00 0.00 0.00 2.17
2637 7230 9.921637 CTGGTGCATTTTACTCCTTAATAAAAA 57.078 29.630 0.00 0.00 34.76 1.94
2648 7246 1.165270 ACCGCTGGTGCATTTTACTC 58.835 50.000 0.00 0.00 39.64 2.59
2657 7255 0.673644 AGTTCATGTACCGCTGGTGC 60.674 55.000 10.01 9.19 38.78 5.01
2678 7276 2.751143 CGGGAGATGAGAGATCACTCCA 60.751 54.545 16.33 6.29 46.00 3.86
2685 7283 1.622811 GCATTCCGGGAGATGAGAGAT 59.377 52.381 17.73 0.00 0.00 2.75
2698 7304 0.734889 GGACTCCAATGTGCATTCCG 59.265 55.000 0.00 0.00 0.00 4.30
2700 7306 2.134789 AGGGACTCCAATGTGCATTC 57.865 50.000 0.00 0.00 34.83 2.67
2738 7344 6.715280 AGTTATGGAGATTTGAGTGTCACAT 58.285 36.000 5.62 0.00 0.00 3.21
2762 7368 3.004171 ACGCGTATGCAATTTAAGGTGA 58.996 40.909 11.67 0.00 42.97 4.02
2784 7402 2.286872 GTCAGCATCCCAGTCAGAATG 58.713 52.381 0.00 0.00 37.54 2.67
2785 7403 1.134580 CGTCAGCATCCCAGTCAGAAT 60.135 52.381 0.00 0.00 0.00 2.40
2786 7404 0.247460 CGTCAGCATCCCAGTCAGAA 59.753 55.000 0.00 0.00 0.00 3.02
2787 7405 0.900182 ACGTCAGCATCCCAGTCAGA 60.900 55.000 0.00 0.00 0.00 3.27
2788 7406 0.738762 CACGTCAGCATCCCAGTCAG 60.739 60.000 0.00 0.00 0.00 3.51
2789 7407 1.293179 CACGTCAGCATCCCAGTCA 59.707 57.895 0.00 0.00 0.00 3.41
2790 7408 1.016130 CACACGTCAGCATCCCAGTC 61.016 60.000 0.00 0.00 0.00 3.51
2791 7409 1.004560 CACACGTCAGCATCCCAGT 60.005 57.895 0.00 0.00 0.00 4.00
2792 7410 1.742880 CCACACGTCAGCATCCCAG 60.743 63.158 0.00 0.00 0.00 4.45
2796 7414 2.447887 CGCTCCACACGTCAGCATC 61.448 63.158 6.24 0.00 32.27 3.91
2804 7422 2.202797 CATCCTCCGCTCCACACG 60.203 66.667 0.00 0.00 0.00 4.49
2806 7424 3.083349 CCCATCCTCCGCTCCACA 61.083 66.667 0.00 0.00 0.00 4.17
2817 7435 0.758123 CCTCTCTTGCTCTCCCATCC 59.242 60.000 0.00 0.00 0.00 3.51
2821 7439 1.521616 CTGCCTCTCTTGCTCTCCC 59.478 63.158 0.00 0.00 0.00 4.30
2846 7464 1.048724 CAGCGATCACCTCCCCCTTA 61.049 60.000 0.00 0.00 0.00 2.69
2847 7465 2.041265 AGCGATCACCTCCCCCTT 59.959 61.111 0.00 0.00 0.00 3.95
2848 7466 2.765807 CAGCGATCACCTCCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
2849 7467 3.866582 CCAGCGATCACCTCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
2850 7468 3.083997 ACCAGCGATCACCTCCCC 61.084 66.667 0.00 0.00 0.00 4.81
2851 7469 2.187946 CACCAGCGATCACCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
2852 7470 1.153549 GTCACCAGCGATCACCTCC 60.154 63.158 0.00 0.00 0.00 4.30
2853 7471 1.153549 GGTCACCAGCGATCACCTC 60.154 63.158 0.00 0.00 0.00 3.85
2854 7472 1.267574 ATGGTCACCAGCGATCACCT 61.268 55.000 1.19 0.00 36.75 4.00
2855 7473 1.091771 CATGGTCACCAGCGATCACC 61.092 60.000 1.19 0.00 36.75 4.02
2856 7474 1.091771 CCATGGTCACCAGCGATCAC 61.092 60.000 1.19 0.00 36.75 3.06
2857 7475 1.221566 CCATGGTCACCAGCGATCA 59.778 57.895 1.19 0.00 36.75 2.92
2858 7476 1.524621 CCCATGGTCACCAGCGATC 60.525 63.158 11.73 0.00 36.75 3.69
2859 7477 2.591753 CCCATGGTCACCAGCGAT 59.408 61.111 11.73 0.00 36.75 4.58
2860 7478 3.716195 CCCCATGGTCACCAGCGA 61.716 66.667 11.73 0.00 36.75 4.93
2861 7479 4.802051 CCCCCATGGTCACCAGCG 62.802 72.222 11.73 0.00 36.75 5.18
2862 7480 3.338250 TCCCCCATGGTCACCAGC 61.338 66.667 11.73 0.00 36.75 4.85
2863 7481 1.616327 TCTCCCCCATGGTCACCAG 60.616 63.158 11.73 0.00 36.75 4.00
2864 7482 1.616327 CTCTCCCCCATGGTCACCA 60.616 63.158 11.73 0.00 38.19 4.17
2898 7518 2.997897 ACCACCAGAGCTCGTCCC 60.998 66.667 8.37 0.00 0.00 4.46
2943 7571 1.842920 TCAAGCTCACCCTGCCTCA 60.843 57.895 0.00 0.00 0.00 3.86
3016 7644 7.499292 TCTCTCCATTTCTCTCAAATGATCTC 58.501 38.462 8.35 0.00 39.36 2.75
3042 7680 2.050918 CACCTATCTTCCCCCTTCCTC 58.949 57.143 0.00 0.00 0.00 3.71
3043 7681 1.345526 CCACCTATCTTCCCCCTTCCT 60.346 57.143 0.00 0.00 0.00 3.36
3044 7682 1.141185 CCACCTATCTTCCCCCTTCC 58.859 60.000 0.00 0.00 0.00 3.46
3045 7683 1.769465 GTCCACCTATCTTCCCCCTTC 59.231 57.143 0.00 0.00 0.00 3.46
3046 7684 1.628327 GGTCCACCTATCTTCCCCCTT 60.628 57.143 0.00 0.00 0.00 3.95
3047 7685 0.029989 GGTCCACCTATCTTCCCCCT 60.030 60.000 0.00 0.00 0.00 4.79
3048 7686 0.029989 AGGTCCACCTATCTTCCCCC 60.030 60.000 0.00 0.00 46.48 5.40
3049 7687 1.132500 CAGGTCCACCTATCTTCCCC 58.868 60.000 0.00 0.00 46.65 4.81
3050 7688 1.763545 GTCAGGTCCACCTATCTTCCC 59.236 57.143 0.00 0.00 46.65 3.97
3051 7689 2.467880 TGTCAGGTCCACCTATCTTCC 58.532 52.381 0.00 0.00 46.65 3.46
3077 7725 2.087501 TGTTGACTGTGTGTTGACGT 57.912 45.000 0.00 0.00 0.00 4.34
3079 7727 3.376859 TGGAATGTTGACTGTGTGTTGAC 59.623 43.478 0.00 0.00 0.00 3.18
3080 7728 3.615155 TGGAATGTTGACTGTGTGTTGA 58.385 40.909 0.00 0.00 0.00 3.18
3082 7730 4.572985 CATGGAATGTTGACTGTGTGTT 57.427 40.909 0.00 0.00 40.20 3.32
3096 7744 4.757019 TGTTAAATGGCATGCATGGAAT 57.243 36.364 27.34 2.60 0.00 3.01
3102 7750 2.186243 ACCCATGTTAAATGGCATGCA 58.814 42.857 21.36 6.13 40.63 3.96
3145 7793 4.770010 CCCTAAACTTGCTTATGGGTTCAA 59.230 41.667 0.00 0.00 0.00 2.69
3177 7825 0.958822 ACCGAACTCCCAAAATGTGC 59.041 50.000 0.00 0.00 0.00 4.57
3178 7826 2.031157 GTCACCGAACTCCCAAAATGTG 60.031 50.000 0.00 0.00 0.00 3.21
3179 7827 2.227194 GTCACCGAACTCCCAAAATGT 58.773 47.619 0.00 0.00 0.00 2.71
3196 7844 0.613260 AGCGAGTGCCATTTAGGTCA 59.387 50.000 0.00 0.00 44.31 4.02
3207 7855 2.484264 ACAAGAAATTGGTAGCGAGTGC 59.516 45.455 0.00 0.00 43.24 4.40
3213 7861 3.128764 GGGCAGTACAAGAAATTGGTAGC 59.871 47.826 0.00 0.00 0.00 3.58
3221 7869 2.624169 GCACGGGCAGTACAAGAAA 58.376 52.632 3.77 0.00 40.72 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.