AutoCloner

Multiple sequence alignment - TraesCS7B01G501600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G501600	chr7B	100.000	5226	0	0	1	5226	750408792	750414017	0.000000e+00	9651.0
1	TraesCS7B01G501600	chr7B	98.260	4139	63	5	1040	5177	750611547	750607417	0.000000e+00	7236.0
2	TraesCS7B01G501600	chr7B	96.580	614	17	2	1	611	750612556	750611944	0.000000e+00	1014.0
3	TraesCS7B01G501600	chr7B	99.178	365	3	0	611	975	750611907	750611543	0.000000e+00	658.0
4	TraesCS7B01G501600	chr7B	100.000	52	0	0	5175	5226	750607272	750607221	4.310000e-16	97.1
5	TraesCS7B01G501600	chr7B	80.357	112	20	2	120	230	14142405	14142515	3.350000e-12	84.2
6	TraesCS7B01G501600	chr7B	97.826	46	1	0	1981	2026	568677006	568677051	4.340000e-11	80.5
7	TraesCS7B01G501600	chr7B	77.686	121	24	3	117	236	14194056	14194174	2.610000e-08	71.3
8	TraesCS7B01G501600	chr7B	91.837	49	4	0	1983	2031	443341207	443341255	9.390000e-08	69.4
9	TraesCS7B01G501600	chr7A	78.556	900	179	14	3899	4791	62728737	62727845	9.760000e-162	580.0
10	TraesCS7B01G501600	chr7A	83.908	87	13	1	141	227	14211791	14211706	1.210000e-11	82.4
11	TraesCS7B01G501600	chr4A	77.369	897	195	8	3899	4791	674616436	674615544	4.640000e-145	525.0
12	TraesCS7B01G501600	chr4A	82.418	91	8	3	1988	2078	34048188	34048106	7.260000e-09	73.1
13	TraesCS7B01G501600	chr4A	90.196	51	5	0	1988	2038	634544113	634544063	3.380000e-07	67.6
14	TraesCS7B01G501600	chr3B	77.186	938	188	14	3866	4786	814807834	814806906	1.670000e-144	523.0
15	TraesCS7B01G501600	chr3B	74.253	435	92	16	2672	3090	814745577	814745147	1.160000e-36	165.0
16	TraesCS7B01G501600	chrUn	78.986	552	93	15	803	1347	2380005	2379470	6.440000e-94	355.0
17	TraesCS7B01G501600	chrUn	77.966	118	23	3	120	236	84385352	84385237	2.610000e-08	71.3
18	TraesCS7B01G501600	chr1D	78.986	552	93	14	803	1347	9576677	9577212	6.440000e-94	355.0
19	TraesCS7B01G501600	chr1D	75.705	461	97	13	2639	3087	494939807	494940264	3.170000e-52	217.0
20	TraesCS7B01G501600	chr6B	78.450	413	78	7	803	1208	68394672	68394264	5.190000e-65	259.0
21	TraesCS7B01G501600	chr6B	79.355	155	24	7	2754	2904	717902743	717902593	9.260000e-18	102.0
22	TraesCS7B01G501600	chr4D	85.714	112	16	0	120	231	301983746	301983635	9.190000e-23	119.0
23	TraesCS7B01G501600	chr6D	79.085	153	28	4	2754	2904	472753489	472753339	9.260000e-18	102.0
24	TraesCS7B01G501600	chr6D	89.655	58	4	2	141	198	312828143	312828088	7.260000e-09	73.1
25	TraesCS7B01G501600	chr5A	82.051	117	21	0	120	236	455997793	455997677	3.330000e-17	100.0
26	TraesCS7B01G501600	chr5B	77.181	149	27	5	2748	2896	25332739	25332598	4.340000e-11	80.5
27	TraesCS7B01G501600	chr5B	78.151	119	24	2	5060	5177	81474592	81474709	2.020000e-09	75.0
28	TraesCS7B01G501600	chr3D	80.172	116	15	6	1980	2095	561434848	561434955	4.340000e-11	80.5
29	TraesCS7B01G501600	chr3D	89.831	59	6	0	1976	2034	558261137	558261195	5.610000e-10	76.8
30	TraesCS7B01G501600	chr5D	78.814	118	23	2	5060	5176	72544708	72544592	1.560000e-10	78.7
31	TraesCS7B01G501600	chr3A	95.652	46	2	0	1981	2026	584355108	584355063	2.020000e-09	75.0
32	TraesCS7B01G501600	chr3A	77.519	129	18	5	1970	2095	659015365	659015485	3.380000e-07	67.6
33	TraesCS7B01G501600	chr2A	77.778	117	21	5	120	235	103788847	103788959	3.380000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G501600	chr7B	750408792	750414017	5225	False	9651.000	9651	100.0000	1	5226	1	chr7B.!!$F5	5225
1	TraesCS7B01G501600	chr7B	750607221	750612556	5335	True	2251.275	7236	98.5045	1	5226	4	chr7B.!!$R1	5225
2	TraesCS7B01G501600	chr7A	62727845	62728737	892	True	580.000	580	78.5560	3899	4791	1	chr7A.!!$R2	892
3	TraesCS7B01G501600	chr4A	674615544	674616436	892	True	525.000	525	77.3690	3899	4791	1	chr4A.!!$R3	892
4	TraesCS7B01G501600	chr3B	814806906	814807834	928	True	523.000	523	77.1860	3866	4786	1	chr3B.!!$R2	920
5	TraesCS7B01G501600	chrUn	2379470	2380005	535	True	355.000	355	78.9860	803	1347	1	chrUn.!!$R1	544
6	TraesCS7B01G501600	chr1D	9576677	9577212	535	False	355.000	355	78.9860	803	1347	1	chr1D.!!$F1	544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
984	1025	0.764890	CGCATGAGGAGGGGGATTAA	59.235	55.000	1.40	F
1008	1052	0.401738	AGGTGGTCAAGATGTGGGTG	59.598	55.000	4.61	F
1763	1807	0.671781	CACAACAAGAGAGGGAGCCG	60.672	60.000	5.52	F
1933	1977	3.020984	GGGTGTTCTTCTGGTTTGTTCA	58.979	45.455	3.18	F
2760	2804	3.743521	TGGACAAGAACTTCAGGTGATG	58.256	45.455	3.07	F
3141	3185	3.496130	CCCTGAATTATGATGACGCTCAC	59.504	47.826	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2656	2700	1.032014	TCCTCCAAAGCAGCAAACAC	58.968	50.000	0.00	0.00	0.00	3.32	R
2760	2804	2.091333	ACCACCCATTCCCCATAATGAC	60.091	50.000	0.00	0.00	38.84	3.06	R
2983	3027	2.112380	TTGAATTCGGCAGCAGATGA	57.888	45.000	0.00	0.00	0.00	2.92	R
3000	3044	7.046652	TGGGAAAATGTTGTATTATGGCATTG	58.953	34.615	4.78	0.00	31.19	2.82	R
4223	4277	3.939740	AGCCATTTCCTCTGCAGATTA	57.060	42.857	18.63	5.38	0.00	1.75	R
5099	5153	0.468214	TCATCTAGAGTGGCCTCCCG	60.468	60.000	3.32	0.00	38.58	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	2.759973	CTAGGGGCTGTCTGGCGA	60.760	66.667	0.00	0.00	42.84	5.54
72	73	2.743928	GCTGTCTGGCGAAGGGTG	60.744	66.667	0.00	0.00	0.00	4.61
152	153	5.239525	GCTCTGGTTTATATGAAAATCCGCT	59.760	40.000	0.00	0.00	0.00	5.52
169	170	2.318578	CGCTGTGTTCGCATGAATTTT	58.681	42.857	0.00	0.00	36.29	1.82
272	276	3.958147	TCCTATATCCTTGTCTGCGAACA	59.042	43.478	0.00	0.00	0.00	3.18
352	356	8.318412	TCTATATGCTTAGACACAAGGACAAAA	58.682	33.333	0.00	0.00	0.00	2.44
437	441	5.700722	TTTGATATACAGGCGATCGTACT	57.299	39.130	17.81	12.57	0.00	2.73
450	454	1.917273	TCGTACTATGAAACTGCCGC	58.083	50.000	0.00	0.00	0.00	6.53
553	557	2.744741	CACAGCTCACGAGTCTCTCTTA	59.255	50.000	0.00	0.00	0.00	2.10
627	668	3.539604	TCGGAAAAACGGTTCACCTTTA	58.460	40.909	6.96	0.00	0.00	1.85
629	670	4.213906	TCGGAAAAACGGTTCACCTTTATC	59.786	41.667	6.96	0.00	0.00	1.75
982	1023	3.125376	GCGCATGAGGAGGGGGATT	62.125	63.158	0.30	0.00	0.00	3.01
984	1025	0.764890	CGCATGAGGAGGGGGATTAA	59.235	55.000	0.00	0.00	0.00	1.40
985	1026	1.142870	CGCATGAGGAGGGGGATTAAA	59.857	52.381	0.00	0.00	0.00	1.52
986	1027	2.811873	CGCATGAGGAGGGGGATTAAAG	60.812	54.545	0.00	0.00	0.00	1.85
988	1029	1.979809	TGAGGAGGGGGATTAAAGCA	58.020	50.000	0.00	0.00	0.00	3.91
990	1031	2.242196	TGAGGAGGGGGATTAAAGCAAG	59.758	50.000	0.00	0.00	0.00	4.01
991	1032	1.570979	AGGAGGGGGATTAAAGCAAGG	59.429	52.381	0.00	0.00	0.00	3.61
992	1033	1.288037	GGAGGGGGATTAAAGCAAGGT	59.712	52.381	0.00	0.00	0.00	3.50
1000	1044	4.079253	GGATTAAAGCAAGGTGGTCAAGA	58.921	43.478	0.00	0.00	0.00	3.02
1008	1052	0.401738	AGGTGGTCAAGATGTGGGTG	59.598	55.000	0.00	0.00	0.00	4.61
1011	1055	2.154462	GTGGTCAAGATGTGGGTGAAG	58.846	52.381	0.00	0.00	0.00	3.02
1020	1064	2.847234	TGGGTGAAGCAGGTCCGT	60.847	61.111	0.00	0.00	0.00	4.69
1023	1067	1.296715	GGTGAAGCAGGTCCGTGAT	59.703	57.895	0.00	0.00	0.00	3.06
1032	1076	1.153429	GGTCCGTGATGTGGCCTAC	60.153	63.158	3.32	0.69	0.00	3.18
1033	1077	1.594833	GTCCGTGATGTGGCCTACA	59.405	57.895	3.32	7.45	44.87	2.74
1035	1079	0.908910	TCCGTGATGTGGCCTACAAT	59.091	50.000	3.32	0.00	43.77	2.71
1065	1109	3.817647	ACACTCTTCAGGATTTTGCTGTC	59.182	43.478	0.00	0.00	37.12	3.51
1067	1111	3.073650	ACTCTTCAGGATTTTGCTGTCCT	59.926	43.478	0.00	0.00	45.60	3.85
1074	1118	2.357569	GGATTTTGCTGTCCTCCTGGAT	60.358	50.000	0.00	0.00	45.29	3.41
1157	1201	2.570752	AGCAGATGAAGGAGCTCAAAGA	59.429	45.455	17.19	0.00	30.05	2.52
1176	1220	3.542648	AGACGATGTCGAGGATGTTAGA	58.457	45.455	9.67	0.00	43.02	2.10
1191	1235	1.398390	GTTAGACAAAGGAGCATGCGG	59.602	52.381	13.01	1.65	0.00	5.69
1323	1367	5.335976	GCGGGAGAAATCAAAAGTGAATCTT	60.336	40.000	0.00	0.00	37.30	2.40
1348	1392	2.783135	GATTGCTCAACAAGAGGGACA	58.217	47.619	0.00	0.00	44.86	4.02
1457	1501	6.276091	CCTATGATCATTTGAAGAGACACGA	58.724	40.000	14.65	0.00	0.00	4.35
1465	1509	6.759356	TCATTTGAAGAGACACGACAAGTTTA	59.241	34.615	0.00	0.00	0.00	2.01
1511	1555	1.067516	GTCGGCATTCAATCCAATGGG	59.932	52.381	0.00	0.00	34.75	4.00
1613	1657	2.288702	CCCAGATACTGAGGAGAATGCG	60.289	54.545	0.00	0.00	32.44	4.73
1615	1659	1.967066	AGATACTGAGGAGAATGCGGG	59.033	52.381	0.00	0.00	0.00	6.13
1710	1754	3.195610	TGTTGACGGATGTCTCTAGCATT	59.804	43.478	0.00	0.00	45.70	3.56
1711	1755	4.401202	TGTTGACGGATGTCTCTAGCATTA	59.599	41.667	0.00	0.00	45.70	1.90
1763	1807	0.671781	CACAACAAGAGAGGGAGCCG	60.672	60.000	0.00	0.00	0.00	5.52
1933	1977	3.020984	GGGTGTTCTTCTGGTTTGTTCA	58.979	45.455	0.00	0.00	0.00	3.18
2003	2047	5.896073	ATACTCCCTCTGTCCCAAATTAG	57.104	43.478	0.00	0.00	0.00	1.73
2063	2107	5.824243	ATCTAACAGAAAAACGTGTCGAG	57.176	39.130	0.00	0.00	0.00	4.04
2113	2157	8.677148	AACACAAACACTTGTCTAGATACATT	57.323	30.769	0.00	0.00	44.15	2.71
2413	2457	5.944007	AGTTAATTATGCCTTCCGTTGTCTT	59.056	36.000	0.00	0.00	0.00	3.01
2632	2676	5.009631	CCAACAACTCCATGGACAGAAATA	58.990	41.667	11.44	0.00	36.27	1.40
2760	2804	3.743521	TGGACAAGAACTTCAGGTGATG	58.256	45.455	0.00	0.00	0.00	3.07
2974	3018	6.423905	TGGAAAGAAGTACTTGATTGTTCTCG	59.576	38.462	14.14	0.00	38.98	4.04
2983	3027	8.417106	AGTACTTGATTGTTCTCGATGACATAT	58.583	33.333	0.00	0.75	0.00	1.78
3000	3044	3.750130	ACATATCATCTGCTGCCGAATTC	59.250	43.478	0.00	0.00	0.00	2.17
3141	3185	3.496130	CCCTGAATTATGATGACGCTCAC	59.504	47.826	0.00	0.00	0.00	3.51
3327	3371	5.555017	AGAACTAAGTGACTGCATGTTGAT	58.445	37.500	0.00	0.00	0.00	2.57
3551	3595	5.504853	AGAATTCCTGGCCTCTTTTCTAAG	58.495	41.667	3.32	0.00	0.00	2.18
4137	4191	4.974645	AGTCATGTTTTCTGTACCTGGA	57.025	40.909	0.00	0.00	0.00	3.86
4223	4277	0.911769	TTCAAGGGAGATGCGTGGAT	59.088	50.000	0.00	0.00	0.00	3.41
4231	4285	2.548707	GGAGATGCGTGGATAATCTGCA	60.549	50.000	0.00	0.00	38.31	4.41
4604	4658	5.923733	AGACTTAGAAGGTGTATCAGGTG	57.076	43.478	0.00	0.00	0.00	4.00
5099	5153	1.154150	GCAGTGAACATCGCAAGGC	60.154	57.895	0.00	0.00	38.47	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	3.483869	CAGACAGCCCCTAGCCCC	61.484	72.222	0.00	0.00	45.47	5.80
66	67	3.953775	CGCCACCTCCACACCCTT	61.954	66.667	0.00	0.00	0.00	3.95
72	73	2.105128	CTCGATCGCCACCTCCAC	59.895	66.667	11.09	0.00	0.00	4.02
122	123	9.455847	GATTTTCATATAAACCAGAGCACATTC	57.544	33.333	0.00	0.00	0.00	2.67
126	127	6.430451	CGGATTTTCATATAAACCAGAGCAC	58.570	40.000	0.00	0.00	0.00	4.40
152	153	3.637432	GGACAAAATTCATGCGAACACA	58.363	40.909	0.00	0.00	32.81	3.72
169	170	3.199677	CACTGTTTCAACTAACCGGACA	58.800	45.455	9.46	0.00	0.00	4.02
272	276	3.815401	ACTGTAAATTTGCTTCTGCGTCT	59.185	39.130	7.80	0.00	43.34	4.18
352	356	6.157994	TGCCCAGAGTTAAGTGATTACCTTAT	59.842	38.462	0.00	0.00	0.00	1.73
354	358	4.288626	TGCCCAGAGTTAAGTGATTACCTT	59.711	41.667	0.00	0.00	0.00	3.50
373	377	1.611491	TCAACGGAAACAAGAATGCCC	59.389	47.619	0.00	0.00	0.00	5.36
437	441	1.377987	GTGGGGCGGCAGTTTCATA	60.378	57.895	12.47	0.00	0.00	2.15
450	454	2.482721	GTCTACATGTTCGTTTGTGGGG	59.517	50.000	2.30	0.00	0.00	4.96
553	557	9.098355	GCTTCAATGTTTTCTTTTACCTTCTTT	57.902	29.630	0.00	0.00	0.00	2.52
594	598	4.493545	CCGTTTTTCCGATTCCAACGATAG	60.494	45.833	4.40	0.00	42.18	2.08
627	668	1.224592	GGGTGGCTCATCAACCGAT	59.775	57.895	0.00	0.00	34.49	4.18
976	1017	2.100197	GACCACCTTGCTTTAATCCCC	58.900	52.381	0.00	0.00	0.00	4.81
978	1019	4.079253	TCTTGACCACCTTGCTTTAATCC	58.921	43.478	0.00	0.00	0.00	3.01
979	1020	5.183904	ACATCTTGACCACCTTGCTTTAATC	59.816	40.000	0.00	0.00	0.00	1.75
982	1023	3.820467	CACATCTTGACCACCTTGCTTTA	59.180	43.478	0.00	0.00	0.00	1.85
984	1025	2.233271	CACATCTTGACCACCTTGCTT	58.767	47.619	0.00	0.00	0.00	3.91
985	1026	1.546323	CCACATCTTGACCACCTTGCT	60.546	52.381	0.00	0.00	0.00	3.91
986	1027	0.883833	CCACATCTTGACCACCTTGC	59.116	55.000	0.00	0.00	0.00	4.01
988	1029	1.149101	ACCCACATCTTGACCACCTT	58.851	50.000	0.00	0.00	0.00	3.50
990	1031	0.400213	TCACCCACATCTTGACCACC	59.600	55.000	0.00	0.00	0.00	4.61
991	1032	2.154462	CTTCACCCACATCTTGACCAC	58.846	52.381	0.00	0.00	0.00	4.16
992	1033	1.545428	GCTTCACCCACATCTTGACCA	60.545	52.381	0.00	0.00	0.00	4.02
1000	1044	1.380302	GGACCTGCTTCACCCACAT	59.620	57.895	0.00	0.00	0.00	3.21
1008	1052	1.021390	CCACATCACGGACCTGCTTC	61.021	60.000	0.00	0.00	0.00	3.86
1011	1055	3.127533	GCCACATCACGGACCTGC	61.128	66.667	0.00	0.00	0.00	4.85
1020	1064	1.552792	TCGACATTGTAGGCCACATCA	59.447	47.619	5.01	0.00	36.90	3.07
1023	1067	0.249120	CCTCGACATTGTAGGCCACA	59.751	55.000	5.01	4.49	34.51	4.17
1032	1076	3.249091	CTGAAGAGTGTCCTCGACATTG	58.751	50.000	0.00	0.00	44.63	2.82
1033	1077	2.232452	CCTGAAGAGTGTCCTCGACATT	59.768	50.000	0.00	0.00	44.63	2.71
1035	1079	1.202891	TCCTGAAGAGTGTCCTCGACA	60.203	52.381	0.00	0.00	42.86	4.35
1074	1118	2.357050	CCACCATGATTTCCTGTGCCTA	60.357	50.000	0.00	0.00	0.00	3.93
1157	1201	3.014623	TGTCTAACATCCTCGACATCGT	58.985	45.455	0.54	0.00	40.80	3.73
1176	1220	0.676782	GGTACCGCATGCTCCTTTGT	60.677	55.000	17.13	5.70	0.00	2.83
1191	1235	0.912486	AGCCCTTGATGAGGTGGTAC	59.088	55.000	0.00	0.00	44.71	3.34
1323	1367	2.416747	CTCTTGTTGAGCAATCGGACA	58.583	47.619	0.00	0.00	36.36	4.02
1511	1555	5.105392	TGCCTAATGATGTTTTGGATGAACC	60.105	40.000	0.00	0.00	39.54	3.62
1613	1657	4.086706	TCTTCTTCTTCCTTGTTCACCC	57.913	45.455	0.00	0.00	0.00	4.61
1615	1659	6.878389	AGATCATCTTCTTCTTCCTTGTTCAC	59.122	38.462	0.00	0.00	0.00	3.18
1733	1777	6.884295	CCCTCTCTTGTTGTGTGGAAATAATA	59.116	38.462	0.00	0.00	0.00	0.98
2226	2270	9.880157	GACCTTAACTGTGTAGAACCATATAAA	57.120	33.333	0.00	0.00	0.00	1.40
2365	2409	4.819630	CAGTTGTTTAGGTGGAAGCAAGTA	59.180	41.667	0.00	0.00	33.12	2.24
2366	2410	3.632145	CAGTTGTTTAGGTGGAAGCAAGT	59.368	43.478	0.00	0.00	34.61	3.16
2367	2411	3.882888	TCAGTTGTTTAGGTGGAAGCAAG	59.117	43.478	0.00	0.00	36.26	4.01
2368	2412	3.882888	CTCAGTTGTTTAGGTGGAAGCAA	59.117	43.478	0.00	0.00	36.26	3.91
2413	2457	5.192176	TGCAGCTCAATGGTGTATTCATTA	58.808	37.500	0.00	0.00	45.23	1.90
2452	2496	1.625315	TCTCTAGCAAGCCACACACAT	59.375	47.619	0.00	0.00	0.00	3.21
2556	2600	1.694696	GGCTCCGGTGATATTTCCTCT	59.305	52.381	7.92	0.00	0.00	3.69
2632	2676	1.560923	GTGTCGATGCGAGTAATGCT	58.439	50.000	0.00	0.00	36.23	3.79
2656	2700	1.032014	TCCTCCAAAGCAGCAAACAC	58.968	50.000	0.00	0.00	0.00	3.32
2760	2804	2.091333	ACCACCCATTCCCCATAATGAC	60.091	50.000	0.00	0.00	38.84	3.06
2983	3027	2.112380	TTGAATTCGGCAGCAGATGA	57.888	45.000	0.00	0.00	0.00	2.92
3000	3044	7.046652	TGGGAAAATGTTGTATTATGGCATTG	58.953	34.615	4.78	0.00	31.19	2.82
3141	3185	8.348507	GCTTATACCTTCCTCATCAAAAGAATG	58.651	37.037	0.00	0.00	0.00	2.67
4137	4191	4.324099	CCTCATGGTCTTCAGGAAAGATGT	60.324	45.833	0.00	0.00	45.57	3.06
4223	4277	3.939740	AGCCATTTCCTCTGCAGATTA	57.060	42.857	18.63	5.38	0.00	1.75
4231	4285	6.755542	AAATAGCTACTAGCCATTTCCTCT	57.244	37.500	8.23	0.00	37.90	3.69
4604	4658	5.106197	TGTGCACAAGGTGATGATCAAATAC	60.106	40.000	19.28	0.00	35.23	1.89
4866	4920	6.712547	ACAAAGCATAGAGAATAAGGGCATAC	59.287	38.462	0.00	0.00	0.00	2.39
5003	5057	5.006153	TGTACACTTAGACGCATTAGCAT	57.994	39.130	0.00	0.00	42.27	3.79
5099	5153	0.468214	TCATCTAGAGTGGCCTCCCG	60.468	60.000	3.32	0.00	38.58	5.14
5113	5167	5.724328	TGAGCGAGTCTTTTTATGTCATCT	58.276	37.500	0.00	0.00	0.00	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.