Multiple sequence alignment - TraesCS7B01G501100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G501100 chr7B 100.000 5399 0 0 1 5399 750245440 750250838 0.000000e+00 9971
1 TraesCS7B01G501100 chr7B 91.020 3285 250 27 494 3759 750171869 750175127 0.000000e+00 4390
2 TraesCS7B01G501100 chr7B 90.126 2775 247 17 1000 3763 750437762 750440520 0.000000e+00 3581
3 TraesCS7B01G501100 chr7B 80.214 2800 492 45 1023 3801 750217732 750220490 0.000000e+00 2045
4 TraesCS7B01G501100 chr7B 87.525 1018 103 10 1771 2766 750108155 750109170 0.000000e+00 1155
5 TraesCS7B01G501100 chr7B 93.478 598 32 4 959 1555 750578357 750578948 0.000000e+00 881
6 TraesCS7B01G501100 chr7B 79.351 1109 202 22 2634 3736 750320106 750319019 0.000000e+00 754
7 TraesCS7B01G501100 chr7B 86.615 650 73 10 3111 3756 692847596 692848235 0.000000e+00 706
8 TraesCS7B01G501100 chr7B 92.073 328 26 0 109 436 750170974 750171301 3.810000e-126 462
9 TraesCS7B01G501100 chr7B 93.688 301 19 0 3796 4096 569765652 569765952 8.250000e-123 451
10 TraesCS7B01G501100 chr7A 90.640 3109 251 26 729 3813 732936680 732933588 0.000000e+00 4093
11 TraesCS7B01G501100 chr7A 90.506 3086 246 19 729 3801 733063647 733060596 0.000000e+00 4032
12 TraesCS7B01G501100 chr7A 93.508 1602 78 14 513 2095 732894797 732893203 0.000000e+00 2359
13 TraesCS7B01G501100 chr7A 87.245 2062 242 15 1714 3763 732922569 732920517 0.000000e+00 2331
14 TraesCS7B01G501100 chr7A 87.605 1307 138 14 2513 3801 732869790 732868490 0.000000e+00 1495
15 TraesCS7B01G501100 chr7A 88.997 718 40 7 4706 5399 732933043 732932341 0.000000e+00 852
16 TraesCS7B01G501100 chr7A 85.823 656 86 5 2125 2778 733001809 733001159 0.000000e+00 689
17 TraesCS7B01G501100 chr7A 90.421 522 30 6 4827 5335 732859122 732859636 0.000000e+00 669
18 TraesCS7B01G501100 chr7A 96.382 387 13 1 1 387 732899700 732899315 2.120000e-178 636
19 TraesCS7B01G501100 chr7A 91.004 478 21 5 4753 5217 732998716 732998248 4.590000e-175 625
20 TraesCS7B01G501100 chr7A 92.365 406 29 1 28 431 732939041 732938636 1.300000e-160 577
21 TraesCS7B01G501100 chr7A 88.110 471 23 7 4706 5145 733060068 733059600 3.700000e-146 529
22 TraesCS7B01G501100 chr7A 94.864 331 17 0 1 331 733064565 733064235 8.020000e-143 518
23 TraesCS7B01G501100 chr7A 87.003 377 27 13 4094 4451 732868491 732868118 6.510000e-109 405
24 TraesCS7B01G501100 chr7A 86.737 377 27 13 4094 4451 733060597 733060225 1.090000e-106 398
25 TraesCS7B01G501100 chr7A 91.549 284 24 0 28 311 732941159 732940876 5.070000e-105 392
26 TraesCS7B01G501100 chr7A 85.561 374 34 10 4092 4449 732933571 732933202 1.840000e-99 374
27 TraesCS7B01G501100 chr7A 95.614 114 3 1 4706 4819 732867961 732867850 1.190000e-41 182
28 TraesCS7B01G501100 chr7A 85.870 184 8 4 548 731 732898896 732898731 4.300000e-41 180
29 TraesCS7B01G501100 chr7A 92.437 119 9 0 502 620 732938175 732938057 2.590000e-38 171
30 TraesCS7B01G501100 chr7A 91.379 116 10 0 316 431 732940787 732940672 5.600000e-35 159
31 TraesCS7B01G501100 chr7A 90.351 114 11 0 4452 4565 732868080 732867967 3.370000e-32 150
32 TraesCS7B01G501100 chr7A 89.831 118 11 1 315 431 733064218 733064101 3.370000e-32 150
33 TraesCS7B01G501100 chr7A 88.596 114 13 0 4452 4565 733060187 733060074 7.290000e-29 139
34 TraesCS7B01G501100 chr7A 88.393 112 13 0 4454 4565 732933160 732933049 9.430000e-28 135
35 TraesCS7B01G501100 chr7A 93.902 82 5 0 501 582 732940454 732940373 2.040000e-24 124
36 TraesCS7B01G501100 chr7A 91.781 73 5 1 5325 5396 732862797 732862869 3.440000e-17 100
37 TraesCS7B01G501100 chr7D 84.686 2070 264 37 1023 3071 633670051 633672088 0.000000e+00 2017
38 TraesCS7B01G501100 chr7D 89.627 723 70 5 3081 3801 633672137 633672856 0.000000e+00 915
39 TraesCS7B01G501100 chr7D 90.099 202 8 2 4753 4943 633674180 633674380 8.980000e-63 252
40 TraesCS7B01G501100 chr1D 81.744 1583 280 8 1001 2579 416841915 416843492 0.000000e+00 1314
41 TraesCS7B01G501100 chr1D 94.788 307 12 4 3800 4105 281286462 281286159 4.890000e-130 475
42 TraesCS7B01G501100 chr1D 75.142 704 146 18 2878 3577 416843803 416844481 2.440000e-78 303
43 TraesCS7B01G501100 chr1B 81.853 1554 272 8 1031 2579 563673448 563674996 0.000000e+00 1299
44 TraesCS7B01G501100 chr1B 94.276 297 17 0 3799 4095 622759458 622759162 6.370000e-124 455
45 TraesCS7B01G501100 chr1A 81.190 1563 281 11 1025 2579 514135835 514137392 0.000000e+00 1245
46 TraesCS7B01G501100 chr4D 96.091 307 9 3 3800 4105 425017448 425017144 1.040000e-136 497
47 TraesCS7B01G501100 chr4D 94.737 304 14 2 3797 4100 314234539 314234840 6.330000e-129 472
48 TraesCS7B01G501100 chr2D 96.333 300 10 1 3800 4099 430879184 430879482 4.860000e-135 492
49 TraesCS7B01G501100 chr6D 93.312 314 19 2 3799 4112 258098310 258097999 3.810000e-126 462
50 TraesCS7B01G501100 chr3B 94.059 303 18 0 3793 4095 651374089 651373787 1.370000e-125 460
51 TraesCS7B01G501100 chr5D 93.750 304 16 3 3803 4105 334795001 334794700 2.290000e-123 453


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G501100 chr7B 750245440 750250838 5398 False 9971.000000 9971 100.000000 1 5399 1 chr7B.!!$F5 5398
1 TraesCS7B01G501100 chr7B 750437762 750440520 2758 False 3581.000000 3581 90.126000 1000 3763 1 chr7B.!!$F6 2763
2 TraesCS7B01G501100 chr7B 750170974 750175127 4153 False 2426.000000 4390 91.546500 109 3759 2 chr7B.!!$F8 3650
3 TraesCS7B01G501100 chr7B 750217732 750220490 2758 False 2045.000000 2045 80.214000 1023 3801 1 chr7B.!!$F4 2778
4 TraesCS7B01G501100 chr7B 750108155 750109170 1015 False 1155.000000 1155 87.525000 1771 2766 1 chr7B.!!$F3 995
5 TraesCS7B01G501100 chr7B 750578357 750578948 591 False 881.000000 881 93.478000 959 1555 1 chr7B.!!$F7 596
6 TraesCS7B01G501100 chr7B 750319019 750320106 1087 True 754.000000 754 79.351000 2634 3736 1 chr7B.!!$R1 1102
7 TraesCS7B01G501100 chr7B 692847596 692848235 639 False 706.000000 706 86.615000 3111 3756 1 chr7B.!!$F2 645
8 TraesCS7B01G501100 chr7A 732920517 732922569 2052 True 2331.000000 2331 87.245000 1714 3763 1 chr7A.!!$R1 2049
9 TraesCS7B01G501100 chr7A 732893203 732899700 6497 True 1058.333333 2359 91.920000 1 2095 3 chr7A.!!$R3 2094
10 TraesCS7B01G501100 chr7A 733059600 733064565 4965 True 961.000000 4032 89.774000 1 5145 6 chr7A.!!$R6 5144
11 TraesCS7B01G501100 chr7A 732932341 732941159 8818 True 764.111111 4093 90.580333 28 5399 9 chr7A.!!$R4 5371
12 TraesCS7B01G501100 chr7A 732998248 733001809 3561 True 657.000000 689 88.413500 2125 5217 2 chr7A.!!$R5 3092
13 TraesCS7B01G501100 chr7A 732867850 732869790 1940 True 558.000000 1495 90.143250 2513 4819 4 chr7A.!!$R2 2306
14 TraesCS7B01G501100 chr7A 732859122 732862869 3747 False 384.500000 669 91.101000 4827 5396 2 chr7A.!!$F1 569
15 TraesCS7B01G501100 chr7D 633670051 633674380 4329 False 1061.333333 2017 88.137333 1023 4943 3 chr7D.!!$F1 3920
16 TraesCS7B01G501100 chr1D 416841915 416844481 2566 False 808.500000 1314 78.443000 1001 3577 2 chr1D.!!$F1 2576
17 TraesCS7B01G501100 chr1B 563673448 563674996 1548 False 1299.000000 1299 81.853000 1031 2579 1 chr1B.!!$F1 1548
18 TraesCS7B01G501100 chr1A 514135835 514137392 1557 False 1245.000000 1245 81.190000 1025 2579 1 chr1A.!!$F1 1554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 7477 0.526954 GCCCAATCTGCATCGCTTTG 60.527 55.0 0.00 0.00 0.00 2.77 F
978 9176 0.935898 GCATTCCATCTCAGTGAGCG 59.064 55.0 15.72 8.68 0.00 5.03 F
2779 12725 0.321653 AGATTTCACCTGCGACACCC 60.322 55.0 0.00 0.00 0.00 4.61 F
3815 13830 0.183014 TGCTACTCCCTCCGTCTAGG 59.817 60.0 0.00 0.00 42.97 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 10687 0.911769 TCCATGTGCCCTACTTCTGG 59.088 55.000 0.0 0.0 0.00 3.86 R
2932 12881 1.024579 GTAACGCCACCCATCCACAG 61.025 60.000 0.0 0.0 0.00 3.66 R
3841 13856 0.104672 TCCCTCCTCCTTGGTCACAA 60.105 55.000 0.0 0.0 37.07 3.33 R
4669 14808 1.220749 GTACCATCTCTGCCGCCAA 59.779 57.895 0.0 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 1.000385 TGCTTTGAGAAAATGCCACCG 60.000 47.619 0.00 0.00 0.00 4.94
113 114 1.178534 AAATGCCACCGGAACACCTG 61.179 55.000 9.46 0.00 0.00 4.00
145 146 3.328931 ACTGCTGATGGTAATATCCCCAG 59.671 47.826 0.00 0.00 33.39 4.45
189 190 3.060272 GTCTATCATGAACGGTTGCATCG 60.060 47.826 0.00 8.18 0.00 3.84
232 233 2.357637 TCCTTGAAACGTTCCAGCAAAG 59.642 45.455 0.00 0.00 0.00 2.77
384 473 3.133721 ACTGATGCAGATGAGGTAAGACC 59.866 47.826 0.82 0.00 35.28 3.85
424 572 7.090808 TGTATAATACTATTTCAGGCTCAGCG 58.909 38.462 0.00 0.00 0.00 5.18
434 4928 1.963338 GGCTCAGCGAAACTGCACT 60.963 57.895 0.00 0.00 46.76 4.40
448 4942 1.191489 TGCACTCCATCGACCCTTGA 61.191 55.000 0.00 0.00 0.00 3.02
537 7413 2.672478 CGAGAAGGGATGCGCCTATTAG 60.672 54.545 4.18 0.00 36.66 1.73
546 7422 1.444917 GCGCCTATTAGTTGTGGGCC 61.445 60.000 0.00 0.00 39.64 5.80
549 7425 2.024414 GCCTATTAGTTGTGGGCCTTG 58.976 52.381 4.53 0.00 37.12 3.61
580 7475 2.123428 GGCCCAATCTGCATCGCTT 61.123 57.895 0.00 0.00 0.00 4.68
582 7477 0.526954 GCCCAATCTGCATCGCTTTG 60.527 55.000 0.00 0.00 0.00 2.77
636 7531 1.000896 CCCCCAACAGATGACACCC 60.001 63.158 0.00 0.00 0.00 4.61
660 7555 3.855689 CCTGGAAAAGGTTGCTGTATG 57.144 47.619 0.00 0.00 41.74 2.39
661 7556 2.094545 CCTGGAAAAGGTTGCTGTATGC 60.095 50.000 0.00 0.00 41.74 3.14
700 8874 5.512753 TGATGCTAAAACTGCAACTCAAA 57.487 34.783 0.00 0.00 44.01 2.69
727 8924 1.332195 GTGGGGAGCTTCTTTGCTTT 58.668 50.000 0.00 0.00 44.17 3.51
747 8944 5.125417 GCTTTATACCTTGCCTTCATGTCAA 59.875 40.000 0.00 0.00 0.00 3.18
759 8956 5.222631 CCTTCATGTCAAAGCAAAGGTAAC 58.777 41.667 0.00 0.00 0.00 2.50
911 9109 1.327764 GACGCCATCAAATCGTTCCTC 59.672 52.381 0.00 0.00 36.50 3.71
944 9142 4.026052 CCTGCTTAATTTCTTCCACCCAT 58.974 43.478 0.00 0.00 0.00 4.00
952 9150 1.679981 TCTTCCACCCATTCATCCCA 58.320 50.000 0.00 0.00 0.00 4.37
971 9169 3.284617 CCACATCAAGCATTCCATCTCA 58.715 45.455 0.00 0.00 0.00 3.27
973 9171 3.945921 CACATCAAGCATTCCATCTCAGT 59.054 43.478 0.00 0.00 0.00 3.41
978 9176 0.935898 GCATTCCATCTCAGTGAGCG 59.064 55.000 15.72 8.68 0.00 5.03
979 9177 1.472201 GCATTCCATCTCAGTGAGCGA 60.472 52.381 15.72 7.68 0.00 4.93
980 9178 2.471818 CATTCCATCTCAGTGAGCGAG 58.528 52.381 15.72 7.23 0.00 5.03
981 9179 1.839424 TTCCATCTCAGTGAGCGAGA 58.161 50.000 15.72 8.32 43.41 4.04
982 9180 1.387539 TCCATCTCAGTGAGCGAGAG 58.612 55.000 15.72 2.60 42.56 3.20
1189 9387 1.079127 CTTGTGGCTACCTGGGTCG 60.079 63.158 0.00 0.00 0.00 4.79
1698 9911 7.286546 TGGGTCACTGTATCTCAAAAATTCAAA 59.713 33.333 0.00 0.00 0.00 2.69
1876 10091 6.750039 CGACACATGGGACCAAATAAATAAAC 59.250 38.462 0.00 0.00 0.00 2.01
2266 10497 4.765339 GCAGTTACAAGGACCTACCAAATT 59.235 41.667 0.00 0.00 42.04 1.82
2298 10529 4.629200 AGAGCTTGTTTTCTCTATCTTGCG 59.371 41.667 0.00 0.00 37.86 4.85
2334 10565 8.190326 AGGACTATGAAATATATGTGTCGGAA 57.810 34.615 0.00 0.00 0.00 4.30
2386 10617 4.771577 TCATTCCACATACACCAAAGCATT 59.228 37.500 0.00 0.00 0.00 3.56
2404 10635 7.510549 AAGCATTTACTAGAAGAAACAGCAA 57.489 32.000 0.00 0.00 0.00 3.91
2598 10837 4.224818 CCTTTGTCTCCTGATCTCTTCCTT 59.775 45.833 0.00 0.00 0.00 3.36
2655 10929 8.920174 TGTACTTATATGTGGCTAGCTTCTTTA 58.080 33.333 15.72 1.32 0.00 1.85
2680 10955 5.411361 TGACATGTGGTGCACTCTAAATAAC 59.589 40.000 17.98 0.00 35.11 1.89
2709 10988 1.067060 CCAAGCAGGTGCATCATCATG 59.933 52.381 0.00 0.00 45.16 3.07
2732 11011 9.334947 CATGGTCTGATAACTTGATGTCTTATT 57.665 33.333 0.00 0.00 0.00 1.40
2766 11045 6.377327 TCAAACTTTGAGTGGTCAGATTTC 57.623 37.500 0.00 0.00 34.08 2.17
2779 12725 0.321653 AGATTTCACCTGCGACACCC 60.322 55.000 0.00 0.00 0.00 4.61
2833 12782 2.180276 TCAGTGTCCCTTCCTAAGCTC 58.820 52.381 0.00 0.00 0.00 4.09
2838 12787 3.961408 GTGTCCCTTCCTAAGCTCAGATA 59.039 47.826 0.00 0.00 0.00 1.98
2941 12890 0.318120 GGTTGGCAAACTGTGGATGG 59.682 55.000 8.31 0.00 36.48 3.51
3009 12958 3.902881 AGATCTCAGAAGCACGGAATT 57.097 42.857 0.00 0.00 0.00 2.17
3010 12959 6.656632 ATAGATCTCAGAAGCACGGAATTA 57.343 37.500 0.00 0.00 0.00 1.40
3011 12960 5.543507 AGATCTCAGAAGCACGGAATTAT 57.456 39.130 0.00 0.00 0.00 1.28
3013 12962 6.352516 AGATCTCAGAAGCACGGAATTATTT 58.647 36.000 0.00 0.00 0.00 1.40
3027 12976 6.106673 CGGAATTATTTGAGTCAGTGGTACT 58.893 40.000 0.00 0.00 0.00 2.73
3152 13146 3.316308 ACAGAGCTTTGTGTTGGATGTTC 59.684 43.478 9.45 0.00 0.00 3.18
3155 13149 4.586001 AGAGCTTTGTGTTGGATGTTCATT 59.414 37.500 0.00 0.00 0.00 2.57
3230 13224 5.313712 TGAATCAACTAACAACCTTCTCCC 58.686 41.667 0.00 0.00 0.00 4.30
3274 13268 3.668447 AGCGGAGGTGCTCAATATATTG 58.332 45.455 17.82 17.82 42.95 1.90
3380 13378 4.599047 ACGTCGTCTTGTTCTATATGCTC 58.401 43.478 0.00 0.00 0.00 4.26
3487 13485 3.573229 TGCTGCTCTGCCCAAGGT 61.573 61.111 0.00 0.00 0.00 3.50
3551 13550 0.253327 GGTGTGGAGGATGGAGGAAC 59.747 60.000 0.00 0.00 0.00 3.62
3568 13567 0.314935 AACGGACAATGCCAAAGCTG 59.685 50.000 0.00 0.00 40.80 4.24
3596 13595 2.355756 CTGGAACTTTATCGGTGCATGG 59.644 50.000 0.00 0.00 0.00 3.66
3604 13603 1.417288 ATCGGTGCATGGAGATGAGA 58.583 50.000 0.00 0.00 0.00 3.27
3616 13615 3.356529 GAGATGAGAAAGCTCCCCAAA 57.643 47.619 0.00 0.00 40.55 3.28
3665 13664 3.963374 TCACCTGAAGCTGAGCTATATGT 59.037 43.478 7.68 0.09 38.25 2.29
3686 13685 9.698309 ATATGTACCAGATTTCTAAAGATGACG 57.302 33.333 0.00 0.00 0.00 4.35
3808 13823 3.696548 CCATTTTCTTTGCTACTCCCTCC 59.303 47.826 0.00 0.00 0.00 4.30
3811 13826 1.183549 TCTTTGCTACTCCCTCCGTC 58.816 55.000 0.00 0.00 0.00 4.79
3812 13827 1.187087 CTTTGCTACTCCCTCCGTCT 58.813 55.000 0.00 0.00 0.00 4.18
3813 13828 2.025605 TCTTTGCTACTCCCTCCGTCTA 60.026 50.000 0.00 0.00 0.00 2.59
3814 13829 2.054232 TTGCTACTCCCTCCGTCTAG 57.946 55.000 0.00 0.00 0.00 2.43
3815 13830 0.183014 TGCTACTCCCTCCGTCTAGG 59.817 60.000 0.00 0.00 42.97 3.02
3816 13831 0.183252 GCTACTCCCTCCGTCTAGGT 59.817 60.000 0.00 0.00 41.99 3.08
3817 13832 1.970092 CTACTCCCTCCGTCTAGGTG 58.030 60.000 0.00 0.00 41.99 4.00
3818 13833 1.489649 CTACTCCCTCCGTCTAGGTGA 59.510 57.143 0.00 0.00 41.99 4.02
3820 13835 1.288335 ACTCCCTCCGTCTAGGTGAAT 59.712 52.381 0.00 0.00 41.99 2.57
3821 13836 2.512896 ACTCCCTCCGTCTAGGTGAATA 59.487 50.000 0.00 0.00 41.99 1.75
3822 13837 3.053095 ACTCCCTCCGTCTAGGTGAATAA 60.053 47.826 0.00 0.00 41.99 1.40
3825 13840 3.318557 CCCTCCGTCTAGGTGAATAAGTC 59.681 52.174 0.00 0.00 41.99 3.01
3826 13841 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
3828 13843 5.278561 CCTCCGTCTAGGTGAATAAGTCATC 60.279 48.000 0.00 0.00 38.90 2.92
3830 13845 5.892119 TCCGTCTAGGTGAATAAGTCATCTT 59.108 40.000 0.00 0.00 46.15 2.40
3831 13846 7.058525 TCCGTCTAGGTGAATAAGTCATCTTA 58.941 38.462 0.00 0.00 46.15 2.10
3832 13847 7.228906 TCCGTCTAGGTGAATAAGTCATCTTAG 59.771 40.741 0.00 0.00 46.15 2.18
3833 13848 7.364200 CGTCTAGGTGAATAAGTCATCTTAGG 58.636 42.308 0.00 0.00 46.15 2.69
3834 13849 7.013464 CGTCTAGGTGAATAAGTCATCTTAGGT 59.987 40.741 0.00 0.00 46.15 3.08
3835 13850 8.697292 GTCTAGGTGAATAAGTCATCTTAGGTT 58.303 37.037 0.00 0.00 46.15 3.50
3836 13851 8.696374 TCTAGGTGAATAAGTCATCTTAGGTTG 58.304 37.037 0.00 0.00 46.15 3.77
3837 13852 7.259088 AGGTGAATAAGTCATCTTAGGTTGT 57.741 36.000 0.00 0.00 46.15 3.32
3838 13853 7.106239 AGGTGAATAAGTCATCTTAGGTTGTG 58.894 38.462 0.00 0.00 46.15 3.33
3839 13854 6.183360 GGTGAATAAGTCATCTTAGGTTGTGC 60.183 42.308 0.00 0.00 39.17 4.57
3840 13855 6.371548 GTGAATAAGTCATCTTAGGTTGTGCA 59.628 38.462 0.00 0.00 39.17 4.57
3841 13856 7.066284 GTGAATAAGTCATCTTAGGTTGTGCAT 59.934 37.037 0.00 0.00 39.17 3.96
3842 13857 7.611467 TGAATAAGTCATCTTAGGTTGTGCATT 59.389 33.333 0.00 0.00 39.17 3.56
3843 13858 5.633830 AAGTCATCTTAGGTTGTGCATTG 57.366 39.130 0.00 0.00 31.46 2.82
3844 13859 4.655963 AGTCATCTTAGGTTGTGCATTGT 58.344 39.130 0.00 0.00 0.00 2.71
3845 13860 4.456911 AGTCATCTTAGGTTGTGCATTGTG 59.543 41.667 0.00 0.00 0.00 3.33
3846 13861 4.455533 GTCATCTTAGGTTGTGCATTGTGA 59.544 41.667 0.00 0.00 0.00 3.58
3847 13862 4.455533 TCATCTTAGGTTGTGCATTGTGAC 59.544 41.667 0.00 0.00 0.00 3.67
3848 13863 3.146066 TCTTAGGTTGTGCATTGTGACC 58.854 45.455 0.00 0.00 0.00 4.02
3849 13864 2.647683 TAGGTTGTGCATTGTGACCA 57.352 45.000 0.00 0.00 32.81 4.02
3850 13865 1.774110 AGGTTGTGCATTGTGACCAA 58.226 45.000 0.00 0.00 32.81 3.67
3851 13866 1.682854 AGGTTGTGCATTGTGACCAAG 59.317 47.619 0.00 0.00 33.17 3.61
3852 13867 1.269726 GGTTGTGCATTGTGACCAAGG 60.270 52.381 0.00 0.00 35.51 3.61
3853 13868 1.680735 GTTGTGCATTGTGACCAAGGA 59.319 47.619 0.00 0.00 34.33 3.36
3854 13869 1.608055 TGTGCATTGTGACCAAGGAG 58.392 50.000 0.00 0.00 34.33 3.69
3855 13870 0.883833 GTGCATTGTGACCAAGGAGG 59.116 55.000 0.00 0.00 45.67 4.30
3856 13871 0.770499 TGCATTGTGACCAAGGAGGA 59.230 50.000 0.00 0.00 41.22 3.71
3857 13872 1.271543 TGCATTGTGACCAAGGAGGAG 60.272 52.381 0.00 0.00 41.22 3.69
3858 13873 1.952367 GCATTGTGACCAAGGAGGAGG 60.952 57.143 0.00 0.00 41.22 4.30
3859 13874 0.995024 ATTGTGACCAAGGAGGAGGG 59.005 55.000 0.00 0.00 41.22 4.30
3860 13875 0.104672 TTGTGACCAAGGAGGAGGGA 60.105 55.000 0.00 0.00 41.22 4.20
3861 13876 0.104672 TGTGACCAAGGAGGAGGGAA 60.105 55.000 0.00 0.00 41.22 3.97
3862 13877 1.064825 GTGACCAAGGAGGAGGGAAA 58.935 55.000 0.00 0.00 41.22 3.13
3863 13878 1.423921 GTGACCAAGGAGGAGGGAAAA 59.576 52.381 0.00 0.00 41.22 2.29
3864 13879 2.140224 TGACCAAGGAGGAGGGAAAAA 58.860 47.619 0.00 0.00 41.22 1.94
3865 13880 2.158519 TGACCAAGGAGGAGGGAAAAAC 60.159 50.000 0.00 0.00 41.22 2.43
3866 13881 1.856920 ACCAAGGAGGAGGGAAAAACA 59.143 47.619 0.00 0.00 41.22 2.83
3867 13882 2.246327 ACCAAGGAGGAGGGAAAAACAA 59.754 45.455 0.00 0.00 41.22 2.83
3868 13883 2.893489 CCAAGGAGGAGGGAAAAACAAG 59.107 50.000 0.00 0.00 41.22 3.16
3869 13884 3.436470 CCAAGGAGGAGGGAAAAACAAGA 60.436 47.826 0.00 0.00 41.22 3.02
3870 13885 3.797559 AGGAGGAGGGAAAAACAAGAG 57.202 47.619 0.00 0.00 0.00 2.85
3871 13886 3.327439 AGGAGGAGGGAAAAACAAGAGA 58.673 45.455 0.00 0.00 0.00 3.10
3872 13887 3.722101 AGGAGGAGGGAAAAACAAGAGAA 59.278 43.478 0.00 0.00 0.00 2.87
3873 13888 3.821600 GGAGGAGGGAAAAACAAGAGAAC 59.178 47.826 0.00 0.00 0.00 3.01
3874 13889 4.446455 GGAGGAGGGAAAAACAAGAGAACT 60.446 45.833 0.00 0.00 0.00 3.01
3875 13890 5.130705 AGGAGGGAAAAACAAGAGAACTT 57.869 39.130 0.00 0.00 36.73 2.66
3876 13891 6.262056 AGGAGGGAAAAACAAGAGAACTTA 57.738 37.500 0.00 0.00 34.70 2.24
3877 13892 6.669631 AGGAGGGAAAAACAAGAGAACTTAA 58.330 36.000 0.00 0.00 34.70 1.85
3878 13893 7.298374 AGGAGGGAAAAACAAGAGAACTTAAT 58.702 34.615 0.00 0.00 34.70 1.40
3879 13894 7.231519 AGGAGGGAAAAACAAGAGAACTTAATG 59.768 37.037 0.00 0.00 34.70 1.90
3880 13895 7.014326 GGAGGGAAAAACAAGAGAACTTAATGT 59.986 37.037 0.00 0.00 34.70 2.71
3881 13896 8.306313 AGGGAAAAACAAGAGAACTTAATGTT 57.694 30.769 0.00 0.00 42.38 2.71
3882 13897 8.758829 AGGGAAAAACAAGAGAACTTAATGTTT 58.241 29.630 0.00 0.00 39.30 2.83
3925 13940 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
3926 13941 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
3927 13942 2.293122 TGCAATGAACTAACCACTGCAC 59.707 45.455 0.00 0.00 33.65 4.57
3928 13943 2.665519 GCAATGAACTAACCACTGCACG 60.666 50.000 0.00 0.00 0.00 5.34
3929 13944 2.543777 ATGAACTAACCACTGCACGT 57.456 45.000 0.00 0.00 0.00 4.49
3930 13945 2.319136 TGAACTAACCACTGCACGTT 57.681 45.000 0.00 0.00 0.00 3.99
3931 13946 3.455990 TGAACTAACCACTGCACGTTA 57.544 42.857 0.00 0.00 0.00 3.18
3932 13947 3.997762 TGAACTAACCACTGCACGTTAT 58.002 40.909 0.00 0.00 0.00 1.89
3933 13948 3.991773 TGAACTAACCACTGCACGTTATC 59.008 43.478 0.00 0.00 0.00 1.75
3934 13949 3.955650 ACTAACCACTGCACGTTATCT 57.044 42.857 0.00 0.00 0.00 1.98
3935 13950 4.267349 ACTAACCACTGCACGTTATCTT 57.733 40.909 0.00 0.00 0.00 2.40
3936 13951 4.638304 ACTAACCACTGCACGTTATCTTT 58.362 39.130 0.00 0.00 0.00 2.52
3937 13952 3.896648 AACCACTGCACGTTATCTTTG 57.103 42.857 0.00 0.00 0.00 2.77
3938 13953 2.151202 ACCACTGCACGTTATCTTTGG 58.849 47.619 0.00 0.00 0.00 3.28
3939 13954 2.151202 CCACTGCACGTTATCTTTGGT 58.849 47.619 0.00 0.00 0.00 3.67
3940 13955 3.244284 ACCACTGCACGTTATCTTTGGTA 60.244 43.478 2.33 0.00 34.30 3.25
3941 13956 3.370978 CCACTGCACGTTATCTTTGGTAG 59.629 47.826 0.00 0.00 0.00 3.18
3942 13957 3.994392 CACTGCACGTTATCTTTGGTAGT 59.006 43.478 0.00 0.00 0.00 2.73
3943 13958 4.091509 CACTGCACGTTATCTTTGGTAGTC 59.908 45.833 0.00 0.00 0.00 2.59
3944 13959 4.021368 ACTGCACGTTATCTTTGGTAGTCT 60.021 41.667 0.00 0.00 0.00 3.24
3945 13960 4.491676 TGCACGTTATCTTTGGTAGTCTC 58.508 43.478 0.00 0.00 0.00 3.36
3946 13961 4.021807 TGCACGTTATCTTTGGTAGTCTCA 60.022 41.667 0.00 0.00 0.00 3.27
3947 13962 4.927425 GCACGTTATCTTTGGTAGTCTCAA 59.073 41.667 0.00 0.00 0.00 3.02
3948 13963 5.062308 GCACGTTATCTTTGGTAGTCTCAAG 59.938 44.000 0.00 0.00 0.00 3.02
3949 13964 6.157211 CACGTTATCTTTGGTAGTCTCAAGT 58.843 40.000 0.00 0.00 0.00 3.16
3950 13965 6.308282 CACGTTATCTTTGGTAGTCTCAAGTC 59.692 42.308 0.00 0.00 0.00 3.01
3951 13966 6.015688 ACGTTATCTTTGGTAGTCTCAAGTCA 60.016 38.462 0.00 0.00 0.00 3.41
3952 13967 7.036220 CGTTATCTTTGGTAGTCTCAAGTCAT 58.964 38.462 0.00 0.00 0.00 3.06
3953 13968 7.545965 CGTTATCTTTGGTAGTCTCAAGTCATT 59.454 37.037 0.00 0.00 0.00 2.57
3954 13969 9.871238 GTTATCTTTGGTAGTCTCAAGTCATTA 57.129 33.333 0.00 0.00 0.00 1.90
3957 13972 9.793259 ATCTTTGGTAGTCTCAAGTCATTAAAA 57.207 29.630 0.00 0.00 0.00 1.52
3958 13973 9.621629 TCTTTGGTAGTCTCAAGTCATTAAAAA 57.378 29.630 0.00 0.00 0.00 1.94
3959 13974 9.665264 CTTTGGTAGTCTCAAGTCATTAAAAAC 57.335 33.333 0.00 0.00 0.00 2.43
3960 13975 8.740123 TTGGTAGTCTCAAGTCATTAAAAACA 57.260 30.769 0.00 0.00 0.00 2.83
3961 13976 8.918202 TGGTAGTCTCAAGTCATTAAAAACAT 57.082 30.769 0.00 0.00 0.00 2.71
3962 13977 8.783093 TGGTAGTCTCAAGTCATTAAAAACATG 58.217 33.333 0.00 0.00 0.00 3.21
3963 13978 7.750903 GGTAGTCTCAAGTCATTAAAAACATGC 59.249 37.037 0.00 0.00 0.00 4.06
3964 13979 7.275888 AGTCTCAAGTCATTAAAAACATGCA 57.724 32.000 0.00 0.00 0.00 3.96
3965 13980 7.141363 AGTCTCAAGTCATTAAAAACATGCAC 58.859 34.615 0.00 0.00 0.00 4.57
3966 13981 6.917477 GTCTCAAGTCATTAAAAACATGCACA 59.083 34.615 0.00 0.00 0.00 4.57
3967 13982 6.917477 TCTCAAGTCATTAAAAACATGCACAC 59.083 34.615 0.00 0.00 0.00 3.82
3968 13983 5.982516 TCAAGTCATTAAAAACATGCACACC 59.017 36.000 0.00 0.00 0.00 4.16
3969 13984 4.881920 AGTCATTAAAAACATGCACACCC 58.118 39.130 0.00 0.00 0.00 4.61
3970 13985 3.993736 GTCATTAAAAACATGCACACCCC 59.006 43.478 0.00 0.00 0.00 4.95
3971 13986 3.643320 TCATTAAAAACATGCACACCCCA 59.357 39.130 0.00 0.00 0.00 4.96
3972 13987 3.460857 TTAAAAACATGCACACCCCAC 57.539 42.857 0.00 0.00 0.00 4.61
3973 13988 1.198713 AAAAACATGCACACCCCACA 58.801 45.000 0.00 0.00 0.00 4.17
3974 13989 1.422531 AAAACATGCACACCCCACAT 58.577 45.000 0.00 0.00 0.00 3.21
3975 13990 0.968405 AAACATGCACACCCCACATC 59.032 50.000 0.00 0.00 0.00 3.06
3976 13991 0.112995 AACATGCACACCCCACATCT 59.887 50.000 0.00 0.00 0.00 2.90
3977 13992 0.112995 ACATGCACACCCCACATCTT 59.887 50.000 0.00 0.00 0.00 2.40
3978 13993 1.259609 CATGCACACCCCACATCTTT 58.740 50.000 0.00 0.00 0.00 2.52
3979 13994 1.619827 CATGCACACCCCACATCTTTT 59.380 47.619 0.00 0.00 0.00 2.27
3980 13995 2.666272 TGCACACCCCACATCTTTTA 57.334 45.000 0.00 0.00 0.00 1.52
3981 13996 3.168035 TGCACACCCCACATCTTTTAT 57.832 42.857 0.00 0.00 0.00 1.40
3982 13997 3.505386 TGCACACCCCACATCTTTTATT 58.495 40.909 0.00 0.00 0.00 1.40
3983 13998 3.257873 TGCACACCCCACATCTTTTATTG 59.742 43.478 0.00 0.00 0.00 1.90
3984 13999 3.368323 GCACACCCCACATCTTTTATTGG 60.368 47.826 0.00 0.00 0.00 3.16
3985 14000 3.831911 CACACCCCACATCTTTTATTGGT 59.168 43.478 0.00 0.00 0.00 3.67
3986 14001 4.283212 CACACCCCACATCTTTTATTGGTT 59.717 41.667 0.00 0.00 0.00 3.67
3987 14002 4.283212 ACACCCCACATCTTTTATTGGTTG 59.717 41.667 0.00 0.00 0.00 3.77
3988 14003 4.526262 CACCCCACATCTTTTATTGGTTGA 59.474 41.667 0.00 0.00 0.00 3.18
3989 14004 5.187576 CACCCCACATCTTTTATTGGTTGAT 59.812 40.000 0.00 0.00 0.00 2.57
3990 14005 6.379703 CACCCCACATCTTTTATTGGTTGATA 59.620 38.462 0.00 0.00 0.00 2.15
3991 14006 7.069826 CACCCCACATCTTTTATTGGTTGATAT 59.930 37.037 0.00 0.00 0.00 1.63
3992 14007 7.069826 ACCCCACATCTTTTATTGGTTGATATG 59.930 37.037 0.00 0.00 0.00 1.78
3993 14008 7.069826 CCCCACATCTTTTATTGGTTGATATGT 59.930 37.037 0.00 0.00 0.00 2.29
3994 14009 8.137437 CCCACATCTTTTATTGGTTGATATGTC 58.863 37.037 0.00 0.00 0.00 3.06
3995 14010 8.685427 CCACATCTTTTATTGGTTGATATGTCA 58.315 33.333 0.00 0.00 0.00 3.58
4005 14020 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
4006 14021 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
4007 14022 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
4008 14023 8.859090 TGGTTGATATGTCAAGAAACAAGAAAT 58.141 29.630 4.98 0.00 44.58 2.17
4009 14024 9.132521 GGTTGATATGTCAAGAAACAAGAAATG 57.867 33.333 4.98 0.00 44.58 2.32
4010 14025 9.897744 GTTGATATGTCAAGAAACAAGAAATGA 57.102 29.630 4.98 0.00 44.58 2.57
4016 14031 8.675705 TGTCAAGAAACAAGAAATGATGTAGA 57.324 30.769 0.00 0.00 0.00 2.59
4017 14032 9.119418 TGTCAAGAAACAAGAAATGATGTAGAA 57.881 29.630 0.00 0.00 0.00 2.10
4018 14033 9.604626 GTCAAGAAACAAGAAATGATGTAGAAG 57.395 33.333 0.00 0.00 0.00 2.85
4019 14034 9.342308 TCAAGAAACAAGAAATGATGTAGAAGT 57.658 29.630 0.00 0.00 0.00 3.01
4020 14035 9.956720 CAAGAAACAAGAAATGATGTAGAAGTT 57.043 29.630 0.00 0.00 0.00 2.66
4025 14040 9.846248 AACAAGAAATGATGTAGAAGTTAATGC 57.154 29.630 0.00 0.00 0.00 3.56
4026 14041 9.013229 ACAAGAAATGATGTAGAAGTTAATGCA 57.987 29.630 0.00 0.00 0.00 3.96
4027 14042 9.282247 CAAGAAATGATGTAGAAGTTAATGCAC 57.718 33.333 0.00 0.00 0.00 4.57
4028 14043 7.989826 AGAAATGATGTAGAAGTTAATGCACC 58.010 34.615 0.00 0.00 0.00 5.01
4029 14044 5.991328 ATGATGTAGAAGTTAATGCACCG 57.009 39.130 0.00 0.00 0.00 4.94
4030 14045 3.621268 TGATGTAGAAGTTAATGCACCGC 59.379 43.478 0.00 0.00 0.00 5.68
4031 14046 1.996898 TGTAGAAGTTAATGCACCGCG 59.003 47.619 0.00 0.00 0.00 6.46
4032 14047 1.003851 TAGAAGTTAATGCACCGCGC 58.996 50.000 0.00 0.00 42.89 6.86
4033 14048 1.226295 GAAGTTAATGCACCGCGCC 60.226 57.895 0.00 0.00 41.33 6.53
4034 14049 1.644786 GAAGTTAATGCACCGCGCCT 61.645 55.000 0.00 0.00 41.33 5.52
4035 14050 0.391927 AAGTTAATGCACCGCGCCTA 60.392 50.000 0.00 0.00 41.33 3.93
4036 14051 0.391927 AGTTAATGCACCGCGCCTAA 60.392 50.000 0.00 0.00 41.33 2.69
4037 14052 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.000 0.00 0.00 41.33 2.18
4038 14053 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
4039 14054 1.087202 TAATGCACCGCGCCTAAGTG 61.087 55.000 0.00 4.02 41.33 3.16
4040 14055 3.605749 ATGCACCGCGCCTAAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
4041 14056 3.047877 GCACCGCGCCTAAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
4042 14057 2.613506 GCACCGCGCCTAAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
4043 14058 1.946267 CACCGCGCCTAAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
4044 14059 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
4045 14060 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
4046 14061 1.209127 CGCGCCTAAGTGTTTTGGG 59.791 57.895 0.00 0.00 30.91 4.12
4047 14062 1.231958 CGCGCCTAAGTGTTTTGGGA 61.232 55.000 0.00 0.00 30.91 4.37
4048 14063 1.173913 GCGCCTAAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 30.91 3.85
4049 14064 1.544246 GCGCCTAAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 30.91 3.01
4050 14065 2.750712 GCGCCTAAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 30.91 1.75
4051 14066 3.380320 GCGCCTAAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 30.91 1.28
4052 14067 4.142249 GCGCCTAAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 30.91 1.40
4053 14068 5.623596 GCGCCTAAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 30.91 1.40
4054 14069 5.804979 CGCCTAAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 30.91 2.32
4055 14070 6.106003 GCCTAAGTGTTTTGGGATTATTTGG 58.894 40.000 0.00 0.00 30.91 3.28
4056 14071 6.295632 GCCTAAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 30.91 3.67
4057 14072 7.676004 CCTAAGTGTTTTGGGATTATTTGGTT 58.324 34.615 0.00 0.00 0.00 3.67
4058 14073 8.154203 CCTAAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
4059 14074 9.554395 CTAAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
4060 14075 8.445275 AAGTGTTTTGGGATTATTTGGTTTTC 57.555 30.769 0.00 0.00 0.00 2.29
4061 14076 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
4062 14077 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
4063 14078 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
4064 14079 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
4065 14080 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
4083 14098 5.496133 GTAAGATGACTTACGCACCTAGA 57.504 43.478 0.00 0.00 45.47 2.43
4084 14099 6.074544 GTAAGATGACTTACGCACCTAGAT 57.925 41.667 0.00 0.00 45.47 1.98
4085 14100 4.576216 AGATGACTTACGCACCTAGATG 57.424 45.455 0.00 0.00 0.00 2.90
4086 14101 3.319405 AGATGACTTACGCACCTAGATGG 59.681 47.826 0.00 0.00 42.93 3.51
4087 14102 2.730382 TGACTTACGCACCTAGATGGA 58.270 47.619 0.00 0.00 39.71 3.41
4088 14103 2.688446 TGACTTACGCACCTAGATGGAG 59.312 50.000 0.00 0.00 39.71 3.86
4089 14104 2.032620 ACTTACGCACCTAGATGGAGG 58.967 52.381 0.00 0.00 42.89 4.30
4090 14105 2.307768 CTTACGCACCTAGATGGAGGA 58.692 52.381 0.00 0.00 39.15 3.71
4091 14106 2.447408 TACGCACCTAGATGGAGGAA 57.553 50.000 0.00 0.00 39.15 3.36
4092 14107 1.115467 ACGCACCTAGATGGAGGAAG 58.885 55.000 0.00 0.00 39.15 3.46
4093 14108 1.115467 CGCACCTAGATGGAGGAAGT 58.885 55.000 0.00 0.00 39.15 3.01
4094 14109 2.307768 CGCACCTAGATGGAGGAAGTA 58.692 52.381 0.00 0.00 39.15 2.24
4125 14140 6.594744 TCTATGCATGTCTATTTGTCCACAT 58.405 36.000 10.16 0.00 0.00 3.21
4163 14181 2.579207 TTAAGGCGGTTGATCGAGAG 57.421 50.000 0.00 0.00 0.00 3.20
4172 14190 3.744660 GGTTGATCGAGAGGCCATATTT 58.255 45.455 5.01 0.00 0.00 1.40
4192 14210 6.642707 ATTTGTTCGTTCATTCAACCCTTA 57.357 33.333 0.00 0.00 0.00 2.69
4207 14226 6.186957 TCAACCCTTATGCATGTTCACTAAT 58.813 36.000 10.16 0.00 0.00 1.73
4244 14277 4.318831 GCACCGTAGCAAATCAATACTAGC 60.319 45.833 0.00 0.00 0.00 3.42
4275 14314 8.682936 ATGTAGATTGGATGAGTTAATGTTCC 57.317 34.615 0.00 0.00 0.00 3.62
4286 14325 7.435068 TGAGTTAATGTTCCTTAGTTTCAGC 57.565 36.000 0.00 0.00 0.00 4.26
4299 14338 6.016777 CCTTAGTTTCAGCATCAACTTCACTT 60.017 38.462 0.40 0.00 34.92 3.16
4444 14501 1.482177 CCCCTCGAATCCATCTCTCCT 60.482 57.143 0.00 0.00 0.00 3.69
4447 14504 3.230134 CCTCGAATCCATCTCTCCTTCT 58.770 50.000 0.00 0.00 0.00 2.85
4448 14505 3.255642 CCTCGAATCCATCTCTCCTTCTC 59.744 52.174 0.00 0.00 0.00 2.87
4487 14582 2.203394 CCCCTCCCGATGCCAATG 60.203 66.667 0.00 0.00 0.00 2.82
4493 14588 0.179020 TCCCGATGCCAATGTCATCC 60.179 55.000 0.00 0.00 37.60 3.51
4501 14596 1.288508 CCAATGTCATCCCCTCCCCA 61.289 60.000 0.00 0.00 0.00 4.96
4513 14608 2.285368 TCCCCATTCTCCGGTGCT 60.285 61.111 0.00 0.00 0.00 4.40
4541 14636 0.318762 GCCCTGTACGAGATGGATCC 59.681 60.000 4.20 4.20 0.00 3.36
4546 14641 1.030457 GTACGAGATGGATCCGTGGT 58.970 55.000 12.38 9.01 36.01 4.16
4565 14660 1.623811 GTGGTCTAGGAGAGTGCCAAA 59.376 52.381 0.00 0.00 34.65 3.28
4616 14755 4.856801 CGGCCGCCTGCACCTATT 62.857 66.667 14.67 0.00 43.89 1.73
4623 14762 1.812571 CGCCTGCACCTATTTCAAACT 59.187 47.619 0.00 0.00 0.00 2.66
4624 14763 2.414559 CGCCTGCACCTATTTCAAACTG 60.415 50.000 0.00 0.00 0.00 3.16
4629 14768 2.989166 GCACCTATTTCAAACTGCAAGC 59.011 45.455 0.00 0.00 37.60 4.01
4669 14808 4.394712 CCAACGGCGCCTCTTCCT 62.395 66.667 26.68 0.00 0.00 3.36
4679 14819 2.665000 CTCTTCCTTGGCGGCAGA 59.335 61.111 12.87 3.97 33.79 4.26
4686 14826 1.522092 CTTGGCGGCAGAGATGGTA 59.478 57.895 12.87 0.00 0.00 3.25
4689 14829 0.396556 TGGCGGCAGAGATGGTACTA 60.397 55.000 7.97 0.00 0.00 1.82
4692 14832 2.224305 GGCGGCAGAGATGGTACTAATT 60.224 50.000 3.07 0.00 0.00 1.40
4693 14833 3.467803 GCGGCAGAGATGGTACTAATTT 58.532 45.455 0.00 0.00 0.00 1.82
4696 14836 5.360591 CGGCAGAGATGGTACTAATTTTCT 58.639 41.667 0.00 0.00 0.00 2.52
4825 15608 4.876125 TGAACGCCAATAAAAATGCTTCA 58.124 34.783 0.00 0.00 0.00 3.02
4853 15636 3.919216 AGGCGATGCTATGAGTAATGAC 58.081 45.455 0.00 0.00 0.00 3.06
4893 15690 2.603075 AACCTGGCTTGGCAATCTTA 57.397 45.000 0.00 0.00 0.00 2.10
4984 15807 2.902705 TGACATCCGTATAGCCAACC 57.097 50.000 0.00 0.00 0.00 3.77
5047 15870 3.442273 GTCCCGCCTTAAATTTGTCATCA 59.558 43.478 0.00 0.00 0.00 3.07
5120 15947 1.745653 GCCACCAAATAACCTCTCTGC 59.254 52.381 0.00 0.00 0.00 4.26
5162 15989 4.746535 ATCCAAACCGTTCAAAACCTTT 57.253 36.364 0.00 0.00 0.00 3.11
5199 16027 8.934023 ACAACAGACCTTCAAATATTTCCTTA 57.066 30.769 0.00 0.00 0.00 2.69
5200 16028 9.362151 ACAACAGACCTTCAAATATTTCCTTAA 57.638 29.630 0.00 0.00 0.00 1.85
5249 16077 3.819337 CCAAATATCTCCATGTCCTGCAG 59.181 47.826 6.78 6.78 0.00 4.41
5259 16087 0.692476 TGTCCTGCAGGCATAACTGT 59.308 50.000 28.91 0.00 40.59 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 2.572104 AGTAGTGATTCCCAGGTGTTCC 59.428 50.000 0.00 0.00 0.00 3.62
113 114 2.171448 ACCATCAGCAGTAGTGATTCCC 59.829 50.000 0.42 0.00 32.06 3.97
145 146 0.464554 GCACTACAAGGGGATCCTGC 60.465 60.000 12.58 7.16 44.07 4.85
189 190 2.059541 CGACCGAAAGAAACCTCACTC 58.940 52.381 0.00 0.00 0.00 3.51
232 233 1.001378 CCTGTGCTTTGTAGGTGTTGC 60.001 52.381 0.00 0.00 0.00 4.17
408 556 3.265791 AGTTTCGCTGAGCCTGAAATAG 58.734 45.455 10.00 0.00 34.47 1.73
424 572 1.079503 GGTCGATGGAGTGCAGTTTC 58.920 55.000 0.00 0.00 0.00 2.78
434 4928 1.550524 CTTGACTCAAGGGTCGATGGA 59.449 52.381 10.57 0.00 37.77 3.41
448 4942 3.390135 TCGCGTTTCTTGATTCTTGACT 58.610 40.909 5.77 0.00 0.00 3.41
478 4972 8.287904 TCTCTCCTATTAATCTCTCTTCCTCT 57.712 38.462 0.00 0.00 0.00 3.69
483 4977 7.831955 TCCCTTCTCTCCTATTAATCTCTCTT 58.168 38.462 0.00 0.00 0.00 2.85
537 7413 1.756561 ACACACCAAGGCCCACAAC 60.757 57.895 0.00 0.00 0.00 3.32
546 7422 2.320587 GCCTCGAGCACACACCAAG 61.321 63.158 6.99 0.00 42.97 3.61
580 7475 1.596934 GGCCTCATGGTCTCGTCAA 59.403 57.895 0.00 0.00 34.49 3.18
582 7477 2.359169 TGGGCCTCATGGTCTCGTC 61.359 63.158 4.53 0.00 38.23 4.20
657 7552 4.463891 TCATTCGATCCTATCTGCAGCATA 59.536 41.667 9.47 7.22 0.00 3.14
659 7554 2.629617 TCATTCGATCCTATCTGCAGCA 59.370 45.455 9.47 0.00 0.00 4.41
660 7555 3.309961 TCATTCGATCCTATCTGCAGC 57.690 47.619 9.47 0.00 0.00 5.25
661 7556 3.617706 GCATCATTCGATCCTATCTGCAG 59.382 47.826 7.63 7.63 0.00 4.41
669 8843 4.274459 GCAGTTTTAGCATCATTCGATCCT 59.726 41.667 0.00 0.00 0.00 3.24
700 8874 0.178990 GAAGCTCCCCACACCTTTGT 60.179 55.000 0.00 0.00 35.84 2.83
759 8956 2.134933 GGGGAGGGCTAGAGGTTCG 61.135 68.421 0.00 0.00 0.00 3.95
911 9109 0.602638 TTAAGCAGGTGTGGCTGACG 60.603 55.000 0.00 0.00 41.66 4.35
944 9142 3.025978 GGAATGCTTGATGTGGGATGAA 58.974 45.455 0.00 0.00 0.00 2.57
952 9150 3.945921 CACTGAGATGGAATGCTTGATGT 59.054 43.478 0.00 0.00 0.00 3.06
971 9169 2.124693 GGGCTAGCTCTCGCTCACT 61.125 63.158 15.72 0.00 45.15 3.41
973 9171 3.212682 CGGGCTAGCTCTCGCTCA 61.213 66.667 13.91 0.00 45.15 4.26
978 9176 0.103390 GTTTCTCCGGGCTAGCTCTC 59.897 60.000 13.91 3.22 0.00 3.20
979 9177 0.324830 AGTTTCTCCGGGCTAGCTCT 60.325 55.000 13.91 0.00 0.00 4.09
980 9178 1.400737 TAGTTTCTCCGGGCTAGCTC 58.599 55.000 15.72 10.26 0.00 4.09
981 9179 1.861982 TTAGTTTCTCCGGGCTAGCT 58.138 50.000 15.72 0.00 0.00 3.32
982 9180 2.484889 CATTAGTTTCTCCGGGCTAGC 58.515 52.381 6.04 6.04 0.00 3.42
983 9181 2.807108 GCCATTAGTTTCTCCGGGCTAG 60.807 54.545 0.00 0.00 37.00 3.42
984 9182 1.140252 GCCATTAGTTTCTCCGGGCTA 59.860 52.381 0.00 0.00 37.00 3.93
1189 9387 2.281345 CGCATCCCTGATCTGGCC 60.281 66.667 13.02 0.00 0.00 5.36
1599 9812 1.164041 CGAGTGTTGTTTTCCCCGCT 61.164 55.000 0.00 0.00 0.00 5.52
1651 9864 4.381932 CCAAGAAGTTGCCTCAAAGTGTTT 60.382 41.667 0.00 0.00 31.64 2.83
1876 10091 3.673323 GCATCTGGAAAAGCTTTAACCCG 60.673 47.826 23.52 19.48 0.00 5.28
1921 10140 1.272807 TCTTCCTTCCGGGTGGTTAG 58.727 55.000 0.00 6.87 36.30 2.34
2298 10529 1.485066 TCATAGTCCTCGGGAAAAGCC 59.515 52.381 0.00 0.00 31.38 4.35
2334 10565 9.941325 CTCTCTGCTATCCATAATTCAATAAGT 57.059 33.333 0.00 0.00 0.00 2.24
2358 10589 3.609853 TGGTGTATGTGGAATGAAGCTC 58.390 45.455 0.00 0.00 0.00 4.09
2404 10635 3.689649 GCCAACTCGGTCACATAATTCTT 59.310 43.478 0.00 0.00 36.97 2.52
2453 10687 0.911769 TCCATGTGCCCTACTTCTGG 59.088 55.000 0.00 0.00 0.00 3.86
2622 10886 8.634444 GCTAGCCACATATAAGTACATATAGCT 58.366 37.037 2.29 11.80 31.33 3.32
2655 10929 3.701205 TTAGAGTGCACCACATGTCAT 57.299 42.857 14.63 0.00 36.74 3.06
2709 10988 8.723942 ACAATAAGACATCAAGTTATCAGACC 57.276 34.615 0.00 0.00 0.00 3.85
2732 11011 8.962679 ACCACTCAAAGTTTGATAACTAAAACA 58.037 29.630 18.35 0.00 43.74 2.83
2742 11021 6.547141 TGAAATCTGACCACTCAAAGTTTGAT 59.453 34.615 18.35 3.96 39.30 2.57
2766 11045 1.577328 GACATTGGGTGTCGCAGGTG 61.577 60.000 0.00 0.00 46.99 4.00
2779 12725 1.466167 CCAAGCAGACTTCGGACATTG 59.534 52.381 0.00 0.00 32.29 2.82
2833 12782 4.825422 TGCAAAGAACTCTCAGGTATCTG 58.175 43.478 0.00 0.00 42.21 2.90
2838 12787 4.090761 TCAATGCAAAGAACTCTCAGGT 57.909 40.909 0.00 0.00 0.00 4.00
2875 12824 5.009631 CCACCAATTACACTGGAGAAATCA 58.990 41.667 0.00 0.00 37.40 2.57
2932 12881 1.024579 GTAACGCCACCCATCCACAG 61.025 60.000 0.00 0.00 0.00 3.66
2941 12890 1.886886 TTGAAGAAGGTAACGCCACC 58.113 50.000 0.00 0.00 46.39 4.61
3009 12958 8.418597 AGAGTTTAGTACCACTGACTCAAATA 57.581 34.615 18.58 0.00 41.29 1.40
3010 12959 7.233757 AGAGAGTTTAGTACCACTGACTCAAAT 59.766 37.037 18.58 6.25 41.29 2.32
3011 12960 6.550108 AGAGAGTTTAGTACCACTGACTCAAA 59.450 38.462 18.58 0.00 41.29 2.69
3013 12962 5.632118 AGAGAGTTTAGTACCACTGACTCA 58.368 41.667 18.58 0.00 41.29 3.41
3152 13146 3.242413 CGGAAATCGGTGCTAACAGAATG 60.242 47.826 0.00 0.00 34.05 2.67
3155 13149 2.004583 CGGAAATCGGTGCTAACAGA 57.995 50.000 0.00 0.00 34.89 3.41
3230 13224 2.492449 ATATCGGGGCGCATCGACAG 62.492 60.000 22.74 3.28 36.10 3.51
3380 13378 3.548745 TGGGTCTTGCTCTATGACATG 57.451 47.619 0.00 0.00 35.69 3.21
3487 13485 0.108585 ACTCTTGCAGCCGAGGAAAA 59.891 50.000 12.09 0.00 0.00 2.29
3551 13550 0.109597 GACAGCTTTGGCATTGTCCG 60.110 55.000 9.46 0.00 37.55 4.79
3596 13595 3.277715 CTTTGGGGAGCTTTCTCATCTC 58.722 50.000 0.00 0.00 41.13 2.75
3614 13613 3.252554 TGGAAGGTGCATTAACCCTTT 57.747 42.857 6.97 0.00 41.54 3.11
3616 13615 2.358195 GGATGGAAGGTGCATTAACCCT 60.358 50.000 0.00 0.00 41.54 4.34
3622 13621 0.107017 CGAGGGATGGAAGGTGCATT 60.107 55.000 0.00 0.00 0.00 3.56
3623 13622 1.528824 CGAGGGATGGAAGGTGCAT 59.471 57.895 0.00 0.00 0.00 3.96
3665 13664 7.033791 GTGACGTCATCTTTAGAAATCTGGTA 58.966 38.462 23.12 0.00 0.00 3.25
3686 13685 1.071605 CGCAGCTCCTTTAGTGTGAC 58.928 55.000 0.00 0.00 0.00 3.67
3742 13748 7.992608 CCAAGGGGCAAATTAATTAAGCTTAAT 59.007 33.333 23.22 23.22 34.98 1.40
3808 13823 7.013464 ACCTAAGATGACTTATTCACCTAGACG 59.987 40.741 0.00 0.00 36.92 4.18
3811 13826 8.478877 ACAACCTAAGATGACTTATTCACCTAG 58.521 37.037 0.00 0.00 36.92 3.02
3812 13827 8.258007 CACAACCTAAGATGACTTATTCACCTA 58.742 37.037 0.00 0.00 36.92 3.08
3813 13828 7.106239 CACAACCTAAGATGACTTATTCACCT 58.894 38.462 0.00 0.00 36.92 4.00
3814 13829 6.183360 GCACAACCTAAGATGACTTATTCACC 60.183 42.308 0.00 0.00 36.92 4.02
3815 13830 6.371548 TGCACAACCTAAGATGACTTATTCAC 59.628 38.462 0.00 0.00 36.92 3.18
3816 13831 6.472016 TGCACAACCTAAGATGACTTATTCA 58.528 36.000 0.00 0.00 37.85 2.57
3817 13832 6.985188 TGCACAACCTAAGATGACTTATTC 57.015 37.500 0.00 0.00 37.85 1.75
3818 13833 7.394359 ACAATGCACAACCTAAGATGACTTATT 59.606 33.333 0.00 0.00 37.85 1.40
3820 13835 6.149308 CACAATGCACAACCTAAGATGACTTA 59.851 38.462 0.00 0.00 37.53 2.24
3821 13836 5.048504 CACAATGCACAACCTAAGATGACTT 60.049 40.000 0.00 0.00 39.81 3.01
3822 13837 4.456911 CACAATGCACAACCTAAGATGACT 59.543 41.667 0.00 0.00 0.00 3.41
3825 13840 4.379813 GGTCACAATGCACAACCTAAGATG 60.380 45.833 0.00 0.00 0.00 2.90
3826 13841 3.758554 GGTCACAATGCACAACCTAAGAT 59.241 43.478 0.00 0.00 0.00 2.40
3828 13843 2.884012 TGGTCACAATGCACAACCTAAG 59.116 45.455 0.00 0.00 0.00 2.18
3829 13844 2.937519 TGGTCACAATGCACAACCTAA 58.062 42.857 0.00 0.00 0.00 2.69
3830 13845 2.647683 TGGTCACAATGCACAACCTA 57.352 45.000 0.00 0.00 0.00 3.08
3831 13846 1.682854 CTTGGTCACAATGCACAACCT 59.317 47.619 0.00 0.00 35.73 3.50
3832 13847 1.269726 CCTTGGTCACAATGCACAACC 60.270 52.381 0.00 0.00 35.73 3.77
3833 13848 1.680735 TCCTTGGTCACAATGCACAAC 59.319 47.619 0.00 0.00 35.73 3.32
3834 13849 1.955778 CTCCTTGGTCACAATGCACAA 59.044 47.619 0.00 0.00 35.73 3.33
3835 13850 1.608055 CTCCTTGGTCACAATGCACA 58.392 50.000 0.00 0.00 35.73 4.57
3836 13851 0.883833 CCTCCTTGGTCACAATGCAC 59.116 55.000 0.00 0.00 35.73 4.57
3837 13852 0.770499 TCCTCCTTGGTCACAATGCA 59.230 50.000 0.00 0.00 35.73 3.96
3838 13853 1.457346 CTCCTCCTTGGTCACAATGC 58.543 55.000 0.00 0.00 35.73 3.56
3839 13854 1.340405 CCCTCCTCCTTGGTCACAATG 60.340 57.143 0.00 0.00 35.73 2.82
3840 13855 0.995024 CCCTCCTCCTTGGTCACAAT 59.005 55.000 0.00 0.00 35.73 2.71
3841 13856 0.104672 TCCCTCCTCCTTGGTCACAA 60.105 55.000 0.00 0.00 37.07 3.33
3842 13857 0.104672 TTCCCTCCTCCTTGGTCACA 60.105 55.000 0.00 0.00 37.07 3.58
3843 13858 1.064825 TTTCCCTCCTCCTTGGTCAC 58.935 55.000 0.00 0.00 37.07 3.67
3844 13859 1.827792 TTTTCCCTCCTCCTTGGTCA 58.172 50.000 0.00 0.00 37.07 4.02
3845 13860 2.158519 TGTTTTTCCCTCCTCCTTGGTC 60.159 50.000 0.00 0.00 37.07 4.02
3846 13861 1.856920 TGTTTTTCCCTCCTCCTTGGT 59.143 47.619 0.00 0.00 37.07 3.67
3847 13862 2.675658 TGTTTTTCCCTCCTCCTTGG 57.324 50.000 0.00 0.00 37.10 3.61
3848 13863 3.823304 CTCTTGTTTTTCCCTCCTCCTTG 59.177 47.826 0.00 0.00 0.00 3.61
3849 13864 3.722101 TCTCTTGTTTTTCCCTCCTCCTT 59.278 43.478 0.00 0.00 0.00 3.36
3850 13865 3.327439 TCTCTTGTTTTTCCCTCCTCCT 58.673 45.455 0.00 0.00 0.00 3.69
3851 13866 3.790089 TCTCTTGTTTTTCCCTCCTCC 57.210 47.619 0.00 0.00 0.00 4.30
3852 13867 4.720046 AGTTCTCTTGTTTTTCCCTCCTC 58.280 43.478 0.00 0.00 0.00 3.71
3853 13868 4.797912 AGTTCTCTTGTTTTTCCCTCCT 57.202 40.909 0.00 0.00 0.00 3.69
3854 13869 6.954487 TTAAGTTCTCTTGTTTTTCCCTCC 57.046 37.500 0.00 0.00 35.36 4.30
3855 13870 7.941919 ACATTAAGTTCTCTTGTTTTTCCCTC 58.058 34.615 0.00 0.00 35.36 4.30
3856 13871 7.898014 ACATTAAGTTCTCTTGTTTTTCCCT 57.102 32.000 0.00 0.00 35.36 4.20
3857 13872 8.942338 AAACATTAAGTTCTCTTGTTTTTCCC 57.058 30.769 0.00 0.00 40.26 3.97
3900 13915 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
3901 13916 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
3902 13917 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
3903 13918 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
3904 13919 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
3905 13920 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
3907 13922 2.665519 CGTGCAGTGGTTAGTTCATTGC 60.666 50.000 4.92 4.92 44.56 3.56
3908 13923 2.548057 ACGTGCAGTGGTTAGTTCATTG 59.452 45.455 0.00 0.00 0.00 2.82
3909 13924 2.846193 ACGTGCAGTGGTTAGTTCATT 58.154 42.857 0.00 0.00 0.00 2.57
3910 13925 2.543777 ACGTGCAGTGGTTAGTTCAT 57.456 45.000 0.00 0.00 0.00 2.57
3911 13926 2.319136 AACGTGCAGTGGTTAGTTCA 57.681 45.000 0.00 0.00 0.00 3.18
3912 13927 4.243270 AGATAACGTGCAGTGGTTAGTTC 58.757 43.478 9.82 5.10 32.64 3.01
3913 13928 4.267349 AGATAACGTGCAGTGGTTAGTT 57.733 40.909 9.82 1.77 32.64 2.24
3914 13929 3.955650 AGATAACGTGCAGTGGTTAGT 57.044 42.857 9.82 0.11 32.64 2.24
3915 13930 4.142902 CCAAAGATAACGTGCAGTGGTTAG 60.143 45.833 9.82 0.00 32.64 2.34
3916 13931 3.749088 CCAAAGATAACGTGCAGTGGTTA 59.251 43.478 7.22 7.22 33.56 2.85
3917 13932 2.552315 CCAAAGATAACGTGCAGTGGTT 59.448 45.455 0.00 0.00 0.00 3.67
3918 13933 2.151202 CCAAAGATAACGTGCAGTGGT 58.849 47.619 0.00 0.00 0.00 4.16
3919 13934 2.151202 ACCAAAGATAACGTGCAGTGG 58.849 47.619 0.00 0.00 0.00 4.00
3920 13935 3.994392 ACTACCAAAGATAACGTGCAGTG 59.006 43.478 0.00 0.00 0.00 3.66
3921 13936 4.021368 AGACTACCAAAGATAACGTGCAGT 60.021 41.667 0.00 0.00 0.00 4.40
3922 13937 4.495422 AGACTACCAAAGATAACGTGCAG 58.505 43.478 0.00 0.00 0.00 4.41
3923 13938 4.021807 TGAGACTACCAAAGATAACGTGCA 60.022 41.667 0.00 0.00 0.00 4.57
3924 13939 4.491676 TGAGACTACCAAAGATAACGTGC 58.508 43.478 0.00 0.00 0.00 5.34
3925 13940 6.157211 ACTTGAGACTACCAAAGATAACGTG 58.843 40.000 0.00 0.00 0.00 4.49
3926 13941 6.015688 TGACTTGAGACTACCAAAGATAACGT 60.016 38.462 0.00 0.00 0.00 3.99
3927 13942 6.387465 TGACTTGAGACTACCAAAGATAACG 58.613 40.000 0.00 0.00 0.00 3.18
3928 13943 8.779354 AATGACTTGAGACTACCAAAGATAAC 57.221 34.615 0.00 0.00 0.00 1.89
3931 13946 9.793259 TTTTAATGACTTGAGACTACCAAAGAT 57.207 29.630 0.00 0.00 0.00 2.40
3932 13947 9.621629 TTTTTAATGACTTGAGACTACCAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
3933 13948 9.665264 GTTTTTAATGACTTGAGACTACCAAAG 57.335 33.333 0.00 0.00 0.00 2.77
3934 13949 9.179909 TGTTTTTAATGACTTGAGACTACCAAA 57.820 29.630 0.00 0.00 0.00 3.28
3935 13950 8.740123 TGTTTTTAATGACTTGAGACTACCAA 57.260 30.769 0.00 0.00 0.00 3.67
3936 13951 8.783093 CATGTTTTTAATGACTTGAGACTACCA 58.217 33.333 0.00 0.00 0.00 3.25
3937 13952 7.750903 GCATGTTTTTAATGACTTGAGACTACC 59.249 37.037 0.00 0.00 0.00 3.18
3938 13953 8.289618 TGCATGTTTTTAATGACTTGAGACTAC 58.710 33.333 0.00 0.00 0.00 2.73
3939 13954 8.289618 GTGCATGTTTTTAATGACTTGAGACTA 58.710 33.333 0.00 0.00 0.00 2.59
3940 13955 7.141363 GTGCATGTTTTTAATGACTTGAGACT 58.859 34.615 0.00 0.00 0.00 3.24
3941 13956 6.917477 TGTGCATGTTTTTAATGACTTGAGAC 59.083 34.615 0.00 5.36 0.00 3.36
3942 13957 6.917477 GTGTGCATGTTTTTAATGACTTGAGA 59.083 34.615 0.00 0.00 0.00 3.27
3943 13958 6.144402 GGTGTGCATGTTTTTAATGACTTGAG 59.856 38.462 0.00 0.00 0.00 3.02
3944 13959 5.982516 GGTGTGCATGTTTTTAATGACTTGA 59.017 36.000 0.00 0.00 0.00 3.02
3945 13960 5.177327 GGGTGTGCATGTTTTTAATGACTTG 59.823 40.000 0.00 0.00 0.00 3.16
3946 13961 5.296748 GGGTGTGCATGTTTTTAATGACTT 58.703 37.500 0.00 0.00 0.00 3.01
3947 13962 4.262420 GGGGTGTGCATGTTTTTAATGACT 60.262 41.667 0.00 0.00 0.00 3.41
3948 13963 3.993736 GGGGTGTGCATGTTTTTAATGAC 59.006 43.478 0.00 0.00 0.00 3.06
3949 13964 3.643320 TGGGGTGTGCATGTTTTTAATGA 59.357 39.130 0.00 0.00 0.00 2.57
3950 13965 3.745458 GTGGGGTGTGCATGTTTTTAATG 59.255 43.478 0.00 0.00 0.00 1.90
3951 13966 3.389329 TGTGGGGTGTGCATGTTTTTAAT 59.611 39.130 0.00 0.00 0.00 1.40
3952 13967 2.766263 TGTGGGGTGTGCATGTTTTTAA 59.234 40.909 0.00 0.00 0.00 1.52
3953 13968 2.388735 TGTGGGGTGTGCATGTTTTTA 58.611 42.857 0.00 0.00 0.00 1.52
3954 13969 1.198713 TGTGGGGTGTGCATGTTTTT 58.801 45.000 0.00 0.00 0.00 1.94
3955 13970 1.344114 GATGTGGGGTGTGCATGTTTT 59.656 47.619 0.00 0.00 0.00 2.43
3956 13971 0.968405 GATGTGGGGTGTGCATGTTT 59.032 50.000 0.00 0.00 0.00 2.83
3957 13972 0.112995 AGATGTGGGGTGTGCATGTT 59.887 50.000 0.00 0.00 0.00 2.71
3958 13973 0.112995 AAGATGTGGGGTGTGCATGT 59.887 50.000 0.00 0.00 0.00 3.21
3959 13974 1.259609 AAAGATGTGGGGTGTGCATG 58.740 50.000 0.00 0.00 0.00 4.06
3960 13975 2.014010 AAAAGATGTGGGGTGTGCAT 57.986 45.000 0.00 0.00 0.00 3.96
3961 13976 2.666272 TAAAAGATGTGGGGTGTGCA 57.334 45.000 0.00 0.00 0.00 4.57
3962 13977 3.368323 CCAATAAAAGATGTGGGGTGTGC 60.368 47.826 0.00 0.00 0.00 4.57
3963 13978 3.831911 ACCAATAAAAGATGTGGGGTGTG 59.168 43.478 0.00 0.00 35.32 3.82
3964 13979 4.126520 ACCAATAAAAGATGTGGGGTGT 57.873 40.909 0.00 0.00 35.32 4.16
3965 13980 4.526262 TCAACCAATAAAAGATGTGGGGTG 59.474 41.667 0.00 0.00 35.32 4.61
3966 13981 4.746466 TCAACCAATAAAAGATGTGGGGT 58.254 39.130 0.00 0.00 35.32 4.95
3967 13982 5.937975 ATCAACCAATAAAAGATGTGGGG 57.062 39.130 0.00 0.00 35.32 4.96
3968 13983 8.010733 ACATATCAACCAATAAAAGATGTGGG 57.989 34.615 0.00 0.00 33.74 4.61
3969 13984 8.685427 TGACATATCAACCAATAAAAGATGTGG 58.315 33.333 0.00 0.00 33.74 4.17
3979 13994 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
3980 13995 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
3981 13996 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
3982 13997 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
3983 13998 9.132521 CATTTCTTGTTTCTTGACATATCAACC 57.867 33.333 0.00 0.00 40.01 3.77
3984 13999 9.897744 TCATTTCTTGTTTCTTGACATATCAAC 57.102 29.630 0.00 0.00 40.01 3.18
3990 14005 9.288576 TCTACATCATTTCTTGTTTCTTGACAT 57.711 29.630 0.00 0.00 0.00 3.06
3991 14006 8.675705 TCTACATCATTTCTTGTTTCTTGACA 57.324 30.769 0.00 0.00 0.00 3.58
3992 14007 9.604626 CTTCTACATCATTTCTTGTTTCTTGAC 57.395 33.333 0.00 0.00 0.00 3.18
3993 14008 9.342308 ACTTCTACATCATTTCTTGTTTCTTGA 57.658 29.630 0.00 0.00 0.00 3.02
3994 14009 9.956720 AACTTCTACATCATTTCTTGTTTCTTG 57.043 29.630 0.00 0.00 0.00 3.02
3999 14014 9.846248 GCATTAACTTCTACATCATTTCTTGTT 57.154 29.630 0.00 0.00 0.00 2.83
4000 14015 9.013229 TGCATTAACTTCTACATCATTTCTTGT 57.987 29.630 0.00 0.00 0.00 3.16
4001 14016 9.282247 GTGCATTAACTTCTACATCATTTCTTG 57.718 33.333 0.00 0.00 0.00 3.02
4002 14017 8.462016 GGTGCATTAACTTCTACATCATTTCTT 58.538 33.333 0.00 0.00 0.00 2.52
4003 14018 7.201644 CGGTGCATTAACTTCTACATCATTTCT 60.202 37.037 0.00 0.00 0.00 2.52
4004 14019 6.907212 CGGTGCATTAACTTCTACATCATTTC 59.093 38.462 0.00 0.00 0.00 2.17
4005 14020 6.677920 GCGGTGCATTAACTTCTACATCATTT 60.678 38.462 0.00 0.00 0.00 2.32
4006 14021 5.220854 GCGGTGCATTAACTTCTACATCATT 60.221 40.000 0.00 0.00 0.00 2.57
4007 14022 4.273480 GCGGTGCATTAACTTCTACATCAT 59.727 41.667 0.00 0.00 0.00 2.45
4008 14023 3.621268 GCGGTGCATTAACTTCTACATCA 59.379 43.478 0.00 0.00 0.00 3.07
4009 14024 3.302480 CGCGGTGCATTAACTTCTACATC 60.302 47.826 0.00 0.00 0.00 3.06
4010 14025 2.607635 CGCGGTGCATTAACTTCTACAT 59.392 45.455 0.00 0.00 0.00 2.29
4011 14026 1.996898 CGCGGTGCATTAACTTCTACA 59.003 47.619 0.00 0.00 0.00 2.74
4012 14027 1.267383 GCGCGGTGCATTAACTTCTAC 60.267 52.381 8.83 0.00 45.45 2.59
4013 14028 1.003851 GCGCGGTGCATTAACTTCTA 58.996 50.000 8.83 0.00 45.45 2.10
4014 14029 1.794222 GCGCGGTGCATTAACTTCT 59.206 52.632 8.83 0.00 45.45 2.85
4015 14030 4.360101 GCGCGGTGCATTAACTTC 57.640 55.556 8.83 0.00 45.45 3.01
4024 14039 2.125202 AAAACACTTAGGCGCGGTGC 62.125 55.000 8.83 4.64 45.38 5.01
4025 14040 0.385473 CAAAACACTTAGGCGCGGTG 60.385 55.000 8.83 9.75 37.05 4.94
4026 14041 1.512156 CCAAAACACTTAGGCGCGGT 61.512 55.000 8.83 0.00 0.00 5.68
4027 14042 1.209127 CCAAAACACTTAGGCGCGG 59.791 57.895 8.83 0.00 0.00 6.46
4028 14043 1.209127 CCCAAAACACTTAGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
4029 14044 1.173913 ATCCCAAAACACTTAGGCGC 58.826 50.000 0.00 0.00 0.00 6.53
4030 14045 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
4031 14046 6.106003 CCAAATAATCCCAAAACACTTAGGC 58.894 40.000 0.00 0.00 0.00 3.93
4032 14047 7.239763 ACCAAATAATCCCAAAACACTTAGG 57.760 36.000 0.00 0.00 0.00 2.69
4033 14048 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
4034 14049 9.549078 GAAAACCAAATAATCCCAAAACACTTA 57.451 29.630 0.00 0.00 0.00 2.24
4035 14050 7.225734 CGAAAACCAAATAATCCCAAAACACTT 59.774 33.333 0.00 0.00 0.00 3.16
4036 14051 6.704050 CGAAAACCAAATAATCCCAAAACACT 59.296 34.615 0.00 0.00 0.00 3.55
4037 14052 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
4038 14053 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
4039 14054 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
4040 14055 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
4041 14056 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
4042 14057 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
4043 14058 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
4044 14059 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
4045 14060 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
4061 14076 9.073890 TCCATCTAGGTGCGTAAGTCATCTTAC 62.074 44.444 0.00 7.74 43.52 2.34
4062 14077 5.009710 CCATCTAGGTGCGTAAGTCATCTTA 59.990 44.000 0.00 0.00 36.49 2.10
4063 14078 4.202161 CCATCTAGGTGCGTAAGTCATCTT 60.202 45.833 0.00 0.00 36.49 2.40
4064 14079 3.319405 CCATCTAGGTGCGTAAGTCATCT 59.681 47.826 0.00 0.00 38.19 2.90
4065 14080 3.318275 TCCATCTAGGTGCGTAAGTCATC 59.682 47.826 0.00 0.00 39.02 2.92
4066 14081 3.296854 TCCATCTAGGTGCGTAAGTCAT 58.703 45.455 0.00 0.00 39.02 3.06
4067 14082 2.688446 CTCCATCTAGGTGCGTAAGTCA 59.312 50.000 0.00 0.00 39.02 3.41
4068 14083 2.034812 CCTCCATCTAGGTGCGTAAGTC 59.965 54.545 0.00 0.00 39.02 3.01
4069 14084 2.032620 CCTCCATCTAGGTGCGTAAGT 58.967 52.381 0.00 0.00 39.02 2.24
4070 14085 2.307768 TCCTCCATCTAGGTGCGTAAG 58.692 52.381 0.00 0.00 37.91 2.34
4071 14086 2.447408 TCCTCCATCTAGGTGCGTAA 57.553 50.000 0.00 0.00 37.91 3.18
4072 14087 2.307768 CTTCCTCCATCTAGGTGCGTA 58.692 52.381 0.00 0.00 37.91 4.42
4073 14088 1.115467 CTTCCTCCATCTAGGTGCGT 58.885 55.000 0.00 0.00 37.91 5.24
4074 14089 1.115467 ACTTCCTCCATCTAGGTGCG 58.885 55.000 0.00 0.00 37.91 5.34
4075 14090 4.156477 AGATACTTCCTCCATCTAGGTGC 58.844 47.826 0.00 0.00 37.91 5.01
4076 14091 9.349713 GATATAGATACTTCCTCCATCTAGGTG 57.650 40.741 0.00 0.00 35.37 4.00
4077 14092 9.303922 AGATATAGATACTTCCTCCATCTAGGT 57.696 37.037 0.00 0.00 35.37 3.08
4081 14096 9.586732 GCATAGATATAGATACTTCCTCCATCT 57.413 37.037 0.00 0.00 33.66 2.90
4082 14097 9.360901 TGCATAGATATAGATACTTCCTCCATC 57.639 37.037 0.00 0.00 0.00 3.51
4083 14098 9.895507 ATGCATAGATATAGATACTTCCTCCAT 57.104 33.333 0.00 0.00 0.00 3.41
4084 14099 9.140874 CATGCATAGATATAGATACTTCCTCCA 57.859 37.037 0.00 0.00 0.00 3.86
4085 14100 9.142014 ACATGCATAGATATAGATACTTCCTCC 57.858 37.037 0.00 0.00 0.00 4.30
4087 14102 9.934784 AGACATGCATAGATATAGATACTTCCT 57.065 33.333 0.00 0.00 0.00 3.36
4125 14140 7.753132 CGCCTTAATCTTTGCAACTAATTAACA 59.247 33.333 0.00 0.00 0.00 2.41
4163 14181 4.992688 TGAATGAACGAACAAATATGGCC 58.007 39.130 0.00 0.00 0.00 5.36
4172 14190 4.083003 GCATAAGGGTTGAATGAACGAACA 60.083 41.667 0.00 0.00 35.12 3.18
4192 14210 8.615211 CGGCATATAATATTAGTGAACATGCAT 58.385 33.333 17.36 0.00 38.35 3.96
4217 14250 1.060937 GATTTGCTACGGTGCAGCG 59.939 57.895 34.46 34.46 44.27 5.18
4275 14314 6.551385 AGTGAAGTTGATGCTGAAACTAAG 57.449 37.500 0.03 0.00 35.60 2.18
4286 14325 3.364366 GCACGGAAGAAGTGAAGTTGATG 60.364 47.826 0.07 0.00 41.83 3.07
4299 14338 2.553602 TCTTAGTTACACGCACGGAAGA 59.446 45.455 0.00 0.00 0.00 2.87
4327 14367 2.969628 TTTTTCTTTTGCGGGCAAGA 57.030 40.000 6.18 1.27 37.24 3.02
4375 14417 1.327303 TTCTCCACCTGCGCATTTTT 58.673 45.000 12.24 0.00 0.00 1.94
4378 14420 2.092968 TCTATTTCTCCACCTGCGCATT 60.093 45.455 12.24 0.00 0.00 3.56
4444 14501 1.568118 GGGATTTGGGGGACGGAGAA 61.568 60.000 0.00 0.00 0.00 2.87
4447 14504 3.018805 GGGGATTTGGGGGACGGA 61.019 66.667 0.00 0.00 0.00 4.69
4448 14505 2.236959 ATTGGGGATTTGGGGGACGG 62.237 60.000 0.00 0.00 0.00 4.79
4487 14582 0.767998 GAGAATGGGGAGGGGATGAC 59.232 60.000 0.00 0.00 0.00 3.06
4493 14588 2.366972 ACCGGAGAATGGGGAGGG 60.367 66.667 9.46 0.00 0.00 4.30
4501 14596 2.125512 GCGACAGCACCGGAGAAT 60.126 61.111 9.46 0.00 44.35 2.40
4513 14608 3.702048 GTACAGGGCCTGGCGACA 61.702 66.667 35.34 13.45 35.51 4.35
4541 14636 0.811915 CACTCTCCTAGACCACCACG 59.188 60.000 0.00 0.00 0.00 4.94
4546 14641 1.902508 CTTTGGCACTCTCCTAGACCA 59.097 52.381 0.00 0.00 34.50 4.02
4606 14745 3.921119 TGCAGTTTGAAATAGGTGCAG 57.079 42.857 0.00 0.00 36.05 4.41
4614 14753 3.160269 AGCTAGGCTTGCAGTTTGAAAT 58.840 40.909 22.34 0.00 33.89 2.17
4615 14754 2.586425 AGCTAGGCTTGCAGTTTGAAA 58.414 42.857 22.34 0.00 33.89 2.69
4616 14755 2.276732 AGCTAGGCTTGCAGTTTGAA 57.723 45.000 22.34 0.00 33.89 2.69
4669 14808 1.220749 GTACCATCTCTGCCGCCAA 59.779 57.895 0.00 0.00 0.00 4.52
4692 14832 8.907685 CACTTTTGTACACGAAAGAAAAAGAAA 58.092 29.630 22.98 4.27 45.74 2.52
4693 14833 8.077386 ACACTTTTGTACACGAAAGAAAAAGAA 58.923 29.630 22.98 0.00 45.74 2.52
4696 14836 7.361127 TGACACTTTTGTACACGAAAGAAAAA 58.639 30.769 22.98 6.10 45.74 1.94
4853 15636 7.699391 CAGGTTACAAATCAGAATACATGCAAG 59.301 37.037 0.00 0.00 0.00 4.01
4984 15807 6.139672 GTGATTTCCAAGCACAAATTAACG 57.860 37.500 0.07 0.00 46.50 3.18
5120 15947 5.589192 GATTTCAATCCTGATCCAAGCAAG 58.411 41.667 0.00 0.00 0.00 4.01
5199 16027 9.099454 GGTCAGTATTCAGATTTCTTATCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5200 16028 8.478877 AGGTCAGTATTCAGATTTCTTATCGTT 58.521 33.333 0.00 0.00 0.00 3.85
5206 16034 6.627087 TGGAGGTCAGTATTCAGATTTCTT 57.373 37.500 0.00 0.00 0.00 2.52
5211 16039 8.503428 AGATATTTGGAGGTCAGTATTCAGAT 57.497 34.615 0.00 0.00 0.00 2.90
5284 16112 3.003689 CCTGTGCAAAGTTTCTAGTGGTG 59.996 47.826 2.51 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.