Multiple sequence alignment - TraesCS7B01G500400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G500400 chr7B 100.000 3244 0 0 1 3244 750091172 750087929 0.000000e+00 5991.0
1 TraesCS7B01G500400 chr7B 84.190 506 62 12 7 498 161632757 161632256 2.930000e-130 475.0
2 TraesCS7B01G500400 chr7A 86.909 909 81 16 1726 2612 733085675 733086567 0.000000e+00 985.0
3 TraesCS7B01G500400 chr7A 82.376 1027 136 26 1893 2899 733246646 733247647 0.000000e+00 852.0
4 TraesCS7B01G500400 chr7A 83.943 766 76 17 863 1600 733084923 733085669 0.000000e+00 689.0
5 TraesCS7B01G500400 chr7A 85.870 552 47 16 1636 2163 733327701 733328245 2.830000e-155 558.0
6 TraesCS7B01G500400 chr7A 84.320 338 38 7 2389 2723 733328243 733328568 1.880000e-82 316.0
7 TraesCS7B01G500400 chr7A 86.207 261 25 4 2979 3232 733086937 733087193 4.120000e-69 272.0
8 TraesCS7B01G500400 chr7A 85.778 225 17 8 1101 1314 733246336 733246556 1.170000e-54 224.0
9 TraesCS7B01G500400 chr7A 93.846 130 6 1 1185 1314 733327247 733327374 9.180000e-46 195.0
10 TraesCS7B01G500400 chr7A 90.476 63 3 1 2916 2975 733086844 733086906 2.680000e-11 80.5
11 TraesCS7B01G500400 chr7A 92.500 40 3 0 990 1029 733246299 733246338 1.260000e-04 58.4
12 TraesCS7B01G500400 chr7D 85.180 668 55 21 1618 2255 633609656 633609003 0.000000e+00 645.0
13 TraesCS7B01G500400 chr7D 89.275 345 31 4 2325 2667 633608976 633608636 8.320000e-116 427.0
14 TraesCS7B01G500400 chr7D 84.742 426 20 10 926 1350 633610368 633609987 5.080000e-103 385.0
15 TraesCS7B01G500400 chr7D 78.452 659 76 32 8 612 593673145 593672499 1.420000e-98 370.0
16 TraesCS7B01G500400 chr7D 77.510 249 32 15 1080 1322 106033533 106033303 9.450000e-26 128.0
17 TraesCS7B01G500400 chr7D 80.000 160 25 5 462 620 131473433 131473586 9.510000e-21 111.0
18 TraesCS7B01G500400 chr7D 78.333 180 25 10 438 613 566544816 566544985 1.590000e-18 104.0
19 TraesCS7B01G500400 chr7D 97.778 45 1 0 1200 1244 622228747 622228703 9.650000e-11 78.7
20 TraesCS7B01G500400 chr7D 79.487 117 18 3 1825 1941 622370067 622369957 9.650000e-11 78.7
21 TraesCS7B01G500400 chr2A 84.381 525 60 16 1 508 14937234 14936715 2.250000e-136 496.0
22 TraesCS7B01G500400 chr2A 77.021 631 101 23 1 620 624963570 624964167 4.040000e-84 322.0
23 TraesCS7B01G500400 chr5A 81.180 627 89 22 2 612 662003672 662003059 8.140000e-131 477.0
24 TraesCS7B01G500400 chr2D 83.462 520 67 14 1 507 179685815 179686328 1.760000e-127 466.0
25 TraesCS7B01G500400 chr3D 83.968 499 61 16 1 485 471392832 471393325 8.200000e-126 460.0
26 TraesCS7B01G500400 chr6A 84.696 477 54 16 1 460 2869896 2870370 2.950000e-125 459.0
27 TraesCS7B01G500400 chr4B 83.071 508 65 17 7 499 68987498 68986997 2.970000e-120 442.0
28 TraesCS7B01G500400 chr4B 78.455 246 35 7 377 612 50170821 50171058 9.380000e-31 145.0
29 TraesCS7B01G500400 chr2B 82.375 522 66 19 7 510 588812434 588812947 6.430000e-117 431.0
30 TraesCS7B01G500400 chr1B 82.828 495 64 16 10 486 639924790 639925281 1.080000e-114 424.0
31 TraesCS7B01G500400 chr1D 78.917 702 76 30 1 664 40378572 40379239 8.380000e-111 411.0
32 TraesCS7B01G500400 chr5D 83.099 284 32 8 1038 1315 12602782 12603055 8.990000e-61 244.0
33 TraesCS7B01G500400 chr5B 75.717 523 73 30 128 613 35178416 35178921 2.540000e-51 213.0
34 TraesCS7B01G500400 chrUn 77.104 297 43 15 1038 1317 255783658 255783946 7.250000e-32 148.0
35 TraesCS7B01G500400 chrUn 77.104 297 43 15 1038 1317 334823220 334823508 7.250000e-32 148.0
36 TraesCS7B01G500400 chrUn 77.104 297 43 15 1038 1317 353513340 353513628 7.250000e-32 148.0
37 TraesCS7B01G500400 chrUn 76.768 297 44 15 1038 1317 241990655 241990367 3.370000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G500400 chr7B 750087929 750091172 3243 True 5991.000000 5991 100.000000 1 3244 1 chr7B.!!$R2 3243
1 TraesCS7B01G500400 chr7B 161632256 161632757 501 True 475.000000 475 84.190000 7 498 1 chr7B.!!$R1 491
2 TraesCS7B01G500400 chr7A 733084923 733087193 2270 False 506.625000 985 86.883750 863 3232 4 chr7A.!!$F1 2369
3 TraesCS7B01G500400 chr7A 733246299 733247647 1348 False 378.133333 852 86.884667 990 2899 3 chr7A.!!$F2 1909
4 TraesCS7B01G500400 chr7A 733327247 733328568 1321 False 356.333333 558 88.012000 1185 2723 3 chr7A.!!$F3 1538
5 TraesCS7B01G500400 chr7D 633608636 633610368 1732 True 485.666667 645 86.399000 926 2667 3 chr7D.!!$R5 1741
6 TraesCS7B01G500400 chr7D 593672499 593673145 646 True 370.000000 370 78.452000 8 612 1 chr7D.!!$R2 604
7 TraesCS7B01G500400 chr2A 14936715 14937234 519 True 496.000000 496 84.381000 1 508 1 chr2A.!!$R1 507
8 TraesCS7B01G500400 chr2A 624963570 624964167 597 False 322.000000 322 77.021000 1 620 1 chr2A.!!$F1 619
9 TraesCS7B01G500400 chr5A 662003059 662003672 613 True 477.000000 477 81.180000 2 612 1 chr5A.!!$R1 610
10 TraesCS7B01G500400 chr2D 179685815 179686328 513 False 466.000000 466 83.462000 1 507 1 chr2D.!!$F1 506
11 TraesCS7B01G500400 chr4B 68986997 68987498 501 True 442.000000 442 83.071000 7 499 1 chr4B.!!$R1 492
12 TraesCS7B01G500400 chr2B 588812434 588812947 513 False 431.000000 431 82.375000 7 510 1 chr2B.!!$F1 503
13 TraesCS7B01G500400 chr1D 40378572 40379239 667 False 411.000000 411 78.917000 1 664 1 chr1D.!!$F1 663
14 TraesCS7B01G500400 chr5B 35178416 35178921 505 False 213.000000 213 75.717000 128 613 1 chr5B.!!$F1 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 1150 0.023732 CGTTGATAGTTGTGAGCGCG 59.976 55.0 0.0 0.00 0.0 6.86 F
860 1153 0.242555 TGATAGTTGTGAGCGCGACA 59.757 50.0 12.1 10.79 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 2117 0.179215 GACATTGAGCGAGCAAACGG 60.179 55.0 0.0 0.0 0.00 4.44 R
2319 2770 0.249657 CAGCTCCAAGCCTCCGTATC 60.250 60.0 0.0 0.0 43.77 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.675575 GCGTCGAGACCTTCAAAACTAGATA 60.676 44.000 0.00 0.00 0.00 1.98
50 51 6.116126 AGACCTTCAAAACTAGATACCATGC 58.884 40.000 0.00 0.00 0.00 4.06
166 185 1.301401 CCTCTCGCGGAACCACAAA 60.301 57.895 6.13 0.00 0.00 2.83
176 195 1.541670 GGAACCACAAACGTGCCTCTA 60.542 52.381 0.00 0.00 32.73 2.43
291 320 1.244019 AACCATGCCTCTTGCGGAAC 61.244 55.000 0.00 0.00 45.60 3.62
292 321 1.377725 CCATGCCTCTTGCGGAACT 60.378 57.895 0.00 0.00 45.60 3.01
311 340 0.314935 TAAAACCGTTCCTCTCGCGT 59.685 50.000 5.77 0.00 0.00 6.01
374 411 2.811317 GCCGTGCCTCTCGTGAAG 60.811 66.667 0.00 0.00 0.00 3.02
383 525 0.249868 CTCTCGTGAAGGCACAACCA 60.250 55.000 0.00 0.00 45.41 3.67
398 540 2.892425 CCATGCCTCTCGCGGAAC 60.892 66.667 6.13 0.00 42.08 3.62
486 748 2.494059 CCTCTCTCGAAAGCAAAACCA 58.506 47.619 0.00 0.00 0.00 3.67
488 750 3.503748 CCTCTCTCGAAAGCAAAACCATT 59.496 43.478 0.00 0.00 0.00 3.16
489 751 4.022849 CCTCTCTCGAAAGCAAAACCATTT 60.023 41.667 0.00 0.00 0.00 2.32
495 757 4.578516 TCGAAAGCAAAACCATTTCTCTCA 59.421 37.500 0.00 0.00 32.08 3.27
499 761 2.351738 GCAAAACCATTTCTCTCACGGG 60.352 50.000 0.00 0.00 0.00 5.28
547 832 5.975693 TTTTTGTTTCCAAGAGTCACAGT 57.024 34.783 0.00 0.00 0.00 3.55
552 837 0.032130 TCCAAGAGTCACAGTCACGC 59.968 55.000 0.00 0.00 0.00 5.34
571 856 4.655527 CGTGACTCTTGCGGAAGT 57.344 55.556 16.72 0.00 0.00 3.01
573 858 2.060326 CGTGACTCTTGCGGAAGTAA 57.940 50.000 16.72 0.00 0.00 2.24
575 860 2.798283 CGTGACTCTTGCGGAAGTAAAA 59.202 45.455 16.72 0.00 34.61 1.52
576 861 3.246699 CGTGACTCTTGCGGAAGTAAAAA 59.753 43.478 16.72 0.00 34.61 1.94
577 862 4.084013 CGTGACTCTTGCGGAAGTAAAAAT 60.084 41.667 16.72 0.00 34.61 1.82
578 863 5.119588 CGTGACTCTTGCGGAAGTAAAAATA 59.880 40.000 16.72 0.00 34.61 1.40
579 864 6.347079 CGTGACTCTTGCGGAAGTAAAAATAA 60.347 38.462 16.72 0.00 34.61 1.40
614 899 2.029290 AGCAAAACCGTGACTCTCGTAT 60.029 45.455 0.24 0.00 0.00 3.06
617 902 4.386652 GCAAAACCGTGACTCTCGTATAAA 59.613 41.667 0.24 0.00 0.00 1.40
620 905 7.515643 CAAAACCGTGACTCTCGTATAAAAAT 58.484 34.615 0.24 0.00 0.00 1.82
621 906 6.642683 AACCGTGACTCTCGTATAAAAATG 57.357 37.500 0.24 0.00 0.00 2.32
624 909 6.034591 CCGTGACTCTCGTATAAAAATGAGT 58.965 40.000 0.00 0.00 37.46 3.41
664 957 7.628769 TTTTCCAAAAGTTAAGTAAGACCGT 57.371 32.000 0.00 0.00 0.00 4.83
665 958 7.628769 TTTCCAAAAGTTAAGTAAGACCGTT 57.371 32.000 0.00 0.00 0.00 4.44
666 959 6.607735 TCCAAAAGTTAAGTAAGACCGTTG 57.392 37.500 0.00 0.00 0.00 4.10
667 960 5.528320 TCCAAAAGTTAAGTAAGACCGTTGG 59.472 40.000 0.00 0.00 34.18 3.77
668 961 5.278120 CCAAAAGTTAAGTAAGACCGTTGGG 60.278 44.000 0.00 0.00 40.11 4.12
669 962 4.961438 AAGTTAAGTAAGACCGTTGGGA 57.039 40.909 0.00 0.00 36.97 4.37
670 963 5.494390 AAGTTAAGTAAGACCGTTGGGAT 57.506 39.130 0.00 0.00 36.97 3.85
671 964 5.494390 AGTTAAGTAAGACCGTTGGGATT 57.506 39.130 0.00 0.00 36.97 3.01
672 965 5.872963 AGTTAAGTAAGACCGTTGGGATTT 58.127 37.500 0.00 0.00 36.97 2.17
673 966 6.301486 AGTTAAGTAAGACCGTTGGGATTTT 58.699 36.000 0.00 0.00 36.97 1.82
674 967 6.774170 AGTTAAGTAAGACCGTTGGGATTTTT 59.226 34.615 0.00 0.00 36.97 1.94
697 990 3.308438 TTCCGAAGTTAGGAAAGACCG 57.692 47.619 14.38 0.00 44.04 4.79
698 991 1.547372 TCCGAAGTTAGGAAAGACCGG 59.453 52.381 0.00 0.00 44.74 5.28
699 992 1.274447 CCGAAGTTAGGAAAGACCGGT 59.726 52.381 6.92 6.92 44.74 5.28
700 993 2.334838 CGAAGTTAGGAAAGACCGGTG 58.665 52.381 14.63 0.00 44.74 4.94
701 994 2.029649 CGAAGTTAGGAAAGACCGGTGA 60.030 50.000 14.63 0.00 44.74 4.02
702 995 3.553508 CGAAGTTAGGAAAGACCGGTGAA 60.554 47.826 14.63 0.00 44.74 3.18
703 996 4.383173 GAAGTTAGGAAAGACCGGTGAAA 58.617 43.478 14.63 0.00 44.74 2.69
704 997 4.426736 AGTTAGGAAAGACCGGTGAAAA 57.573 40.909 14.63 0.00 44.74 2.29
705 998 4.132336 AGTTAGGAAAGACCGGTGAAAAC 58.868 43.478 14.63 6.63 44.74 2.43
706 999 1.977056 AGGAAAGACCGGTGAAAACC 58.023 50.000 14.63 9.15 44.74 3.27
707 1000 1.213430 AGGAAAGACCGGTGAAAACCA 59.787 47.619 14.63 0.00 44.74 3.67
708 1001 2.025898 GGAAAGACCGGTGAAAACCAA 58.974 47.619 14.63 0.00 0.00 3.67
709 1002 2.427812 GGAAAGACCGGTGAAAACCAAA 59.572 45.455 14.63 0.00 0.00 3.28
710 1003 3.119065 GGAAAGACCGGTGAAAACCAAAA 60.119 43.478 14.63 0.00 0.00 2.44
711 1004 3.513680 AAGACCGGTGAAAACCAAAAC 57.486 42.857 14.63 0.00 0.00 2.43
712 1005 1.402613 AGACCGGTGAAAACCAAAACG 59.597 47.619 14.63 0.00 0.00 3.60
713 1006 0.179132 ACCGGTGAAAACCAAAACGC 60.179 50.000 6.12 0.00 0.00 4.84
714 1007 0.872451 CCGGTGAAAACCAAAACGCC 60.872 55.000 0.00 0.00 0.00 5.68
715 1008 1.203600 CGGTGAAAACCAAAACGCCG 61.204 55.000 0.00 0.00 46.63 6.46
716 1009 0.100861 GGTGAAAACCAAAACGCCGA 59.899 50.000 0.00 0.00 0.00 5.54
717 1010 1.469423 GGTGAAAACCAAAACGCCGAA 60.469 47.619 0.00 0.00 0.00 4.30
718 1011 2.260481 GTGAAAACCAAAACGCCGAAA 58.740 42.857 0.00 0.00 0.00 3.46
719 1012 2.666994 GTGAAAACCAAAACGCCGAAAA 59.333 40.909 0.00 0.00 0.00 2.29
720 1013 3.123116 GTGAAAACCAAAACGCCGAAAAA 59.877 39.130 0.00 0.00 0.00 1.94
762 1055 5.398603 AAAAACAGACAACATGTGTGGAA 57.601 34.783 11.62 0.00 44.84 3.53
763 1056 5.398603 AAAACAGACAACATGTGTGGAAA 57.601 34.783 11.62 0.00 44.84 3.13
764 1057 5.398603 AAACAGACAACATGTGTGGAAAA 57.601 34.783 11.62 0.00 44.84 2.29
765 1058 5.596836 AACAGACAACATGTGTGGAAAAT 57.403 34.783 11.62 0.00 44.84 1.82
766 1059 6.707440 AACAGACAACATGTGTGGAAAATA 57.293 33.333 11.62 0.00 44.84 1.40
767 1060 6.707440 ACAGACAACATGTGTGGAAAATAA 57.293 33.333 11.62 0.00 44.84 1.40
768 1061 7.106439 ACAGACAACATGTGTGGAAAATAAA 57.894 32.000 11.62 0.00 44.84 1.40
769 1062 7.551585 ACAGACAACATGTGTGGAAAATAAAA 58.448 30.769 11.62 0.00 44.84 1.52
770 1063 8.203485 ACAGACAACATGTGTGGAAAATAAAAT 58.797 29.630 11.62 0.00 44.84 1.82
771 1064 9.689976 CAGACAACATGTGTGGAAAATAAAATA 57.310 29.630 0.00 0.00 41.96 1.40
793 1086 4.877323 AAAAAGAATTCGGAGGATACGC 57.123 40.909 0.00 0.00 46.39 4.42
794 1087 3.821421 AAAGAATTCGGAGGATACGCT 57.179 42.857 0.00 0.00 46.39 5.07
795 1088 3.372660 AAGAATTCGGAGGATACGCTC 57.627 47.619 0.00 0.00 46.39 5.03
796 1089 2.307768 AGAATTCGGAGGATACGCTCA 58.692 47.619 0.00 0.00 46.39 4.26
797 1090 2.693591 AGAATTCGGAGGATACGCTCAA 59.306 45.455 0.00 0.00 46.39 3.02
798 1091 3.132289 AGAATTCGGAGGATACGCTCAAA 59.868 43.478 0.00 0.00 46.39 2.69
799 1092 2.579207 TTCGGAGGATACGCTCAAAG 57.421 50.000 0.00 0.00 46.39 2.77
800 1093 0.102481 TCGGAGGATACGCTCAAAGC 59.898 55.000 0.00 0.00 46.39 3.51
809 1102 2.863153 GCTCAAAGCGCGACACAT 59.137 55.556 12.10 0.00 0.00 3.21
810 1103 2.078226 GCTCAAAGCGCGACACATA 58.922 52.632 12.10 0.00 0.00 2.29
811 1104 0.442310 GCTCAAAGCGCGACACATAA 59.558 50.000 12.10 0.00 0.00 1.90
812 1105 1.527793 GCTCAAAGCGCGACACATAAG 60.528 52.381 12.10 0.00 0.00 1.73
813 1106 1.061131 CTCAAAGCGCGACACATAAGG 59.939 52.381 12.10 0.00 0.00 2.69
814 1107 1.075542 CAAAGCGCGACACATAAGGA 58.924 50.000 12.10 0.00 0.00 3.36
815 1108 1.463056 CAAAGCGCGACACATAAGGAA 59.537 47.619 12.10 0.00 0.00 3.36
816 1109 1.359848 AAGCGCGACACATAAGGAAG 58.640 50.000 12.10 0.00 0.00 3.46
817 1110 0.460284 AGCGCGACACATAAGGAAGG 60.460 55.000 12.10 0.00 0.00 3.46
818 1111 1.429148 GCGCGACACATAAGGAAGGG 61.429 60.000 12.10 0.00 0.00 3.95
819 1112 1.429148 CGCGACACATAAGGAAGGGC 61.429 60.000 0.00 0.00 0.00 5.19
820 1113 1.095807 GCGACACATAAGGAAGGGCC 61.096 60.000 0.00 0.00 0.00 5.80
821 1114 0.810031 CGACACATAAGGAAGGGCCG 60.810 60.000 0.00 0.00 43.43 6.13
822 1115 0.539986 GACACATAAGGAAGGGCCGA 59.460 55.000 0.00 0.00 43.43 5.54
823 1116 0.988832 ACACATAAGGAAGGGCCGAA 59.011 50.000 0.00 0.00 43.43 4.30
824 1117 1.353022 ACACATAAGGAAGGGCCGAAA 59.647 47.619 0.00 0.00 43.43 3.46
825 1118 2.017049 CACATAAGGAAGGGCCGAAAG 58.983 52.381 0.00 0.00 43.43 2.62
826 1119 1.025041 CATAAGGAAGGGCCGAAAGC 58.975 55.000 0.00 0.00 43.43 3.51
827 1120 0.623723 ATAAGGAAGGGCCGAAAGCA 59.376 50.000 0.00 0.00 46.50 3.91
833 1126 2.975799 GGGCCGAAAGCACGTCAA 60.976 61.111 0.00 0.00 46.50 3.18
834 1127 2.556287 GGCCGAAAGCACGTCAAG 59.444 61.111 0.00 0.00 46.50 3.02
835 1128 2.251642 GGCCGAAAGCACGTCAAGT 61.252 57.895 0.00 0.00 46.50 3.16
847 1140 1.710013 CGTCAAGTGGCGTTGATAGT 58.290 50.000 5.51 0.00 38.68 2.12
848 1141 2.066262 CGTCAAGTGGCGTTGATAGTT 58.934 47.619 5.51 0.00 38.68 2.24
849 1142 2.159841 CGTCAAGTGGCGTTGATAGTTG 60.160 50.000 5.51 0.00 38.68 3.16
850 1143 2.806244 GTCAAGTGGCGTTGATAGTTGT 59.194 45.455 5.51 0.00 38.68 3.32
851 1144 2.805671 TCAAGTGGCGTTGATAGTTGTG 59.194 45.455 0.00 0.00 31.31 3.33
852 1145 2.805671 CAAGTGGCGTTGATAGTTGTGA 59.194 45.455 0.00 0.00 0.00 3.58
853 1146 2.688507 AGTGGCGTTGATAGTTGTGAG 58.311 47.619 0.00 0.00 0.00 3.51
854 1147 1.128692 GTGGCGTTGATAGTTGTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
855 1148 0.370273 GGCGTTGATAGTTGTGAGCG 59.630 55.000 0.00 0.00 0.00 5.03
856 1149 0.247301 GCGTTGATAGTTGTGAGCGC 60.247 55.000 0.00 0.00 36.97 5.92
857 1150 0.023732 CGTTGATAGTTGTGAGCGCG 59.976 55.000 0.00 0.00 0.00 6.86
858 1151 1.346365 GTTGATAGTTGTGAGCGCGA 58.654 50.000 12.10 0.00 0.00 5.87
859 1152 1.059264 GTTGATAGTTGTGAGCGCGAC 59.941 52.381 12.10 3.30 0.00 5.19
860 1153 0.242555 TGATAGTTGTGAGCGCGACA 59.757 50.000 12.10 10.79 0.00 4.35
861 1154 0.640768 GATAGTTGTGAGCGCGACAC 59.359 55.000 25.49 25.49 38.55 3.67
869 1162 1.135315 GAGCGCGACACGTAACCTA 59.865 57.895 12.10 0.00 46.11 3.08
876 1169 1.660607 CGACACGTAACCTAGCGTCTA 59.339 52.381 0.00 0.00 39.48 2.59
880 1173 3.441572 ACACGTAACCTAGCGTCTACATT 59.558 43.478 0.00 0.00 39.48 2.71
894 1187 2.429610 TCTACATTGGGCTTCGTAGTCC 59.570 50.000 5.63 5.63 46.91 3.85
897 1190 2.588856 ATTGGGCTTCGTAGTCCCGC 62.589 60.000 10.44 0.00 46.13 6.13
900 1193 2.278013 GCTTCGTAGTCCCGCGAG 60.278 66.667 8.23 0.00 38.40 5.03
906 1199 3.506096 TAGTCCCGCGAGCGACTG 61.506 66.667 24.51 7.13 42.83 3.51
912 1205 2.508891 CCGCGAGCGACTGAATCAC 61.509 63.158 19.72 0.00 42.83 3.06
936 1229 1.873863 GCCTGTTAGCCCACGAAAC 59.126 57.895 0.00 0.00 0.00 2.78
939 1232 0.250553 CTGTTAGCCCACGAAACCCA 60.251 55.000 0.00 0.00 0.00 4.51
972 1266 2.358737 AAGCAAACCTCGCTCCCG 60.359 61.111 0.00 0.00 39.29 5.14
1036 1333 4.699522 GCGACACCCCACCTCCAC 62.700 72.222 0.00 0.00 0.00 4.02
1037 1334 4.016706 CGACACCCCACCTCCACC 62.017 72.222 0.00 0.00 0.00 4.61
1038 1335 3.647771 GACACCCCACCTCCACCC 61.648 72.222 0.00 0.00 0.00 4.61
1164 1461 2.087646 GCTCTCAATTTCTCGCCCTTT 58.912 47.619 0.00 0.00 0.00 3.11
1165 1462 2.489722 GCTCTCAATTTCTCGCCCTTTT 59.510 45.455 0.00 0.00 0.00 2.27
1166 1463 3.671702 GCTCTCAATTTCTCGCCCTTTTG 60.672 47.826 0.00 0.00 0.00 2.44
1167 1464 3.750371 TCTCAATTTCTCGCCCTTTTGA 58.250 40.909 0.00 0.00 0.00 2.69
1168 1465 3.753272 TCTCAATTTCTCGCCCTTTTGAG 59.247 43.478 0.00 0.00 40.72 3.02
1169 1466 3.486383 TCAATTTCTCGCCCTTTTGAGT 58.514 40.909 0.00 0.00 33.88 3.41
1181 1479 3.497262 CCCTTTTGAGTTACGACAGGTTC 59.503 47.826 0.00 0.00 30.02 3.62
1324 1641 0.678048 CCTTGGTACTGCCTGCTTCC 60.678 60.000 0.00 0.00 38.35 3.46
1367 1704 2.275318 CCCGCAACAACAACAACAATT 58.725 42.857 0.00 0.00 0.00 2.32
1421 1765 4.644954 AGCGCGCAAATTTAGTTAGTTAC 58.355 39.130 35.10 0.00 0.00 2.50
1422 1766 4.390909 AGCGCGCAAATTTAGTTAGTTACT 59.609 37.500 35.10 1.72 41.04 2.24
1423 1767 4.490890 GCGCGCAAATTTAGTTAGTTACTG 59.509 41.667 29.10 0.00 37.73 2.74
1424 1768 5.614760 CGCGCAAATTTAGTTAGTTACTGT 58.385 37.500 8.75 0.00 37.73 3.55
1425 1769 6.670452 GCGCGCAAATTTAGTTAGTTACTGTA 60.670 38.462 29.10 0.00 37.73 2.74
1429 1773 9.737025 CGCAAATTTAGTTAGTTACTGTAGTTC 57.263 33.333 0.00 0.00 37.73 3.01
1456 1809 2.037641 TCATCATAGGACATTCAGCCGG 59.962 50.000 0.00 0.00 0.00 6.13
1498 1854 2.247358 GAATTTGTGAGCCAAAGGGGA 58.753 47.619 0.00 0.00 45.79 4.81
1520 1876 3.866651 AGATTTTGAGCACAGCTACGAT 58.133 40.909 0.00 0.00 39.88 3.73
1547 1912 6.829811 TCATTGCATAGGACATTGATTCAGAA 59.170 34.615 0.00 0.00 0.00 3.02
1576 1942 8.930760 GCAGTATATAATGGTCTTCAGACAATC 58.069 37.037 11.84 0.00 46.47 2.67
1611 2001 7.496920 TCAAATGTTTATGCACCAAATTGACAA 59.503 29.630 0.00 0.00 0.00 3.18
1614 2004 5.752472 TGTTTATGCACCAAATTGACAACTG 59.248 36.000 0.00 0.00 0.00 3.16
1629 2039 5.627172 TGACAACTGCTCATAAAAATACGC 58.373 37.500 0.00 0.00 0.00 4.42
1634 2050 7.114811 ACAACTGCTCATAAAAATACGCTTTTG 59.885 33.333 0.00 0.00 31.15 2.44
1662 2078 7.436933 TCTTATTTCATCTGCGAGTGTATGAT 58.563 34.615 0.00 0.00 0.00 2.45
1693 2110 1.675415 GCAGCTCTCACCCTTTCTGAG 60.675 57.143 0.00 0.00 37.14 3.35
1700 2117 4.017808 TCTCACCCTTTCTGAGTACTAGC 58.982 47.826 0.00 0.00 37.12 3.42
1701 2118 3.097614 TCACCCTTTCTGAGTACTAGCC 58.902 50.000 0.00 0.00 0.00 3.93
1703 2120 2.100989 CCCTTTCTGAGTACTAGCCGT 58.899 52.381 0.00 0.00 0.00 5.68
1705 2122 3.056035 CCCTTTCTGAGTACTAGCCGTTT 60.056 47.826 0.00 0.00 0.00 3.60
1706 2123 3.927142 CCTTTCTGAGTACTAGCCGTTTG 59.073 47.826 0.00 0.00 0.00 2.93
1707 2124 2.649331 TCTGAGTACTAGCCGTTTGC 57.351 50.000 0.00 0.00 41.71 3.68
1734 2176 3.569701 TCAATGTCTTCCTTCACTTTGCC 59.430 43.478 0.00 0.00 31.11 4.52
1777 2220 0.250467 TGCTCTGCTTTCCAGGTGTC 60.250 55.000 0.00 0.00 42.05 3.67
1804 2247 2.552315 GCTGGAAGATTTCAAACACCGA 59.448 45.455 0.00 0.00 34.07 4.69
1865 2308 1.869767 GACTTGCGCTATCAAGGGATG 59.130 52.381 9.73 0.00 45.72 3.51
1954 2398 0.323360 AGCCAATAAAGCCAAGCGGA 60.323 50.000 0.00 0.00 0.00 5.54
1990 2434 0.179073 AGCAGACGCATGATGGGTAC 60.179 55.000 15.36 8.18 43.89 3.34
2015 2460 6.402550 CGTCATTTGAGAATCCGATCAGTTTT 60.403 38.462 0.00 0.00 0.00 2.43
2018 2463 3.009723 TGAGAATCCGATCAGTTTTGCC 58.990 45.455 0.00 0.00 0.00 4.52
2062 2509 6.975196 AGCTCATACTGATTGACTCTACAT 57.025 37.500 0.00 0.00 0.00 2.29
2065 2512 6.462207 GCTCATACTGATTGACTCTACATGGT 60.462 42.308 0.00 0.00 0.00 3.55
2066 2513 7.255625 GCTCATACTGATTGACTCTACATGGTA 60.256 40.741 0.00 0.00 0.00 3.25
2067 2514 8.533569 TCATACTGATTGACTCTACATGGTAA 57.466 34.615 0.00 0.00 0.00 2.85
2068 2515 8.977412 TCATACTGATTGACTCTACATGGTAAA 58.023 33.333 0.00 0.00 0.00 2.01
2069 2516 9.599866 CATACTGATTGACTCTACATGGTAAAA 57.400 33.333 0.00 0.00 0.00 1.52
2071 2518 8.723942 ACTGATTGACTCTACATGGTAAAATC 57.276 34.615 0.00 0.26 0.00 2.17
2087 2538 6.150976 TGGTAAAATCTTACATCTTGTGCTGG 59.849 38.462 0.00 0.00 39.43 4.85
2096 2547 2.928801 TCTTGTGCTGGAACTTGCTA 57.071 45.000 0.00 0.00 0.00 3.49
2120 2571 7.681939 ATATGTTTTCGGAACTTTGCTTCTA 57.318 32.000 0.00 0.00 0.00 2.10
2195 2646 2.854253 TGGAGAGGCTGTCCAAAGT 58.146 52.632 29.32 0.00 41.32 2.66
2230 2681 5.004922 AGAAAAACTAGCGAGAGGAGATG 57.995 43.478 0.00 0.00 0.00 2.90
2245 2696 1.461127 GAGATGGCGGCGATCATAAAC 59.539 52.381 23.89 8.46 0.00 2.01
2276 2727 3.864003 ACGATTTTCCTAAAGCTAGCGAC 59.136 43.478 9.55 0.00 0.00 5.19
2303 2754 2.384382 CAAGCACCACAAAATGTCGTC 58.616 47.619 0.00 0.00 0.00 4.20
2313 2764 4.091365 CACAAAATGTCGTCGAGCAAGATA 59.909 41.667 0.00 0.00 0.00 1.98
2314 2765 4.327357 ACAAAATGTCGTCGAGCAAGATAG 59.673 41.667 0.00 0.00 0.00 2.08
2315 2766 4.371855 AAATGTCGTCGAGCAAGATAGA 57.628 40.909 0.00 0.00 0.00 1.98
2316 2767 4.576216 AATGTCGTCGAGCAAGATAGAT 57.424 40.909 0.00 0.00 0.00 1.98
2317 2768 5.690997 AATGTCGTCGAGCAAGATAGATA 57.309 39.130 0.00 0.00 0.00 1.98
2318 2769 5.888691 ATGTCGTCGAGCAAGATAGATAT 57.111 39.130 0.00 0.00 0.00 1.63
2319 2770 5.035784 TGTCGTCGAGCAAGATAGATATG 57.964 43.478 0.00 0.00 0.00 1.78
2320 2771 4.755123 TGTCGTCGAGCAAGATAGATATGA 59.245 41.667 0.00 0.00 0.00 2.15
2321 2772 5.412904 TGTCGTCGAGCAAGATAGATATGAT 59.587 40.000 0.00 0.00 0.00 2.45
2322 2773 6.594159 TGTCGTCGAGCAAGATAGATATGATA 59.406 38.462 0.00 0.00 0.00 2.15
2323 2774 6.902948 GTCGTCGAGCAAGATAGATATGATAC 59.097 42.308 0.00 0.00 0.00 2.24
2359 2815 4.947645 TGCTGCTCTTGTAAATTTTGCTT 58.052 34.783 0.00 0.00 0.00 3.91
2370 2839 7.701809 TGTAAATTTTGCTTTTACCTTTCCG 57.298 32.000 0.00 0.00 38.29 4.30
2382 2851 1.871676 ACCTTTCCGACTTTTCTTCGC 59.128 47.619 0.00 0.00 35.06 4.70
2409 2878 2.910688 AACAAGAGGCGAAGAACTCA 57.089 45.000 0.00 0.00 35.90 3.41
2452 2921 5.296748 CCCCTTATGTTGGTCAAAGTTTTG 58.703 41.667 0.00 0.00 39.48 2.44
2453 2922 5.163353 CCCCTTATGTTGGTCAAAGTTTTGT 60.163 40.000 4.67 0.00 39.18 2.83
2458 2928 9.753669 CTTATGTTGGTCAAAGTTTTGTTTTTC 57.246 29.630 4.67 0.00 39.18 2.29
2470 2940 6.048509 AGTTTTGTTTTTCGCTGAATGGATT 58.951 32.000 0.00 0.00 0.00 3.01
2496 2966 3.190118 CCAAGCTCACTGATGAAAGGAAC 59.810 47.826 0.00 0.00 33.30 3.62
2502 2972 7.624549 AGCTCACTGATGAAAGGAACTATAAA 58.375 34.615 0.00 0.00 38.49 1.40
2508 2978 9.167311 ACTGATGAAAGGAACTATAAATGTCAC 57.833 33.333 0.00 0.00 38.49 3.67
2514 2984 3.560068 GGAACTATAAATGTCACCCTGCG 59.440 47.826 0.00 0.00 0.00 5.18
2585 3064 4.515191 GGTGTCTGTTGCTCACTTCAATTA 59.485 41.667 0.00 0.00 33.30 1.40
2645 3128 2.092968 ACTGGTGTACATACCCATGCTG 60.093 50.000 0.00 0.00 40.09 4.41
2664 3147 1.611491 TGTGGCTTTGGGACGAATTTC 59.389 47.619 0.00 0.00 0.00 2.17
2751 3235 6.652481 CCAAGCTCTCTAGTGAAAGAAATCAA 59.348 38.462 0.00 0.00 0.00 2.57
2752 3236 7.360776 CCAAGCTCTCTAGTGAAAGAAATCAAC 60.361 40.741 0.00 0.00 0.00 3.18
2753 3237 6.169800 AGCTCTCTAGTGAAAGAAATCAACC 58.830 40.000 0.00 0.00 0.00 3.77
2755 3239 6.091986 GCTCTCTAGTGAAAGAAATCAACCTG 59.908 42.308 0.00 0.00 0.00 4.00
2756 3240 5.934625 TCTCTAGTGAAAGAAATCAACCTGC 59.065 40.000 0.00 0.00 0.00 4.85
2757 3241 5.620206 TCTAGTGAAAGAAATCAACCTGCA 58.380 37.500 0.00 0.00 0.00 4.41
2793 3283 2.951642 CCTTCTTCTTTGCACCAAGTCA 59.048 45.455 0.00 0.00 0.00 3.41
2794 3284 3.004106 CCTTCTTCTTTGCACCAAGTCAG 59.996 47.826 0.00 0.00 0.00 3.51
2795 3285 3.281727 TCTTCTTTGCACCAAGTCAGT 57.718 42.857 0.00 0.00 0.00 3.41
2800 3290 5.906113 TCTTTGCACCAAGTCAGTTTTAA 57.094 34.783 0.00 0.00 0.00 1.52
2808 3298 6.578023 CACCAAGTCAGTTTTAATTTTGGGA 58.422 36.000 5.47 0.00 38.27 4.37
2812 3302 7.714813 CCAAGTCAGTTTTAATTTTGGGATGTT 59.285 33.333 0.00 0.00 32.09 2.71
2815 3305 9.927668 AGTCAGTTTTAATTTTGGGATGTTATG 57.072 29.630 0.00 0.00 0.00 1.90
2817 3307 7.821846 TCAGTTTTAATTTTGGGATGTTATGGC 59.178 33.333 0.00 0.00 0.00 4.40
2834 3324 0.381089 GGCTGTGCATTGCTCATCTC 59.619 55.000 13.29 6.55 31.70 2.75
2840 3330 5.142061 TGTGCATTGCTCATCTCATTTTT 57.858 34.783 10.49 0.00 0.00 1.94
2844 3334 6.810182 GTGCATTGCTCATCTCATTTTTAGTT 59.190 34.615 10.49 0.00 0.00 2.24
2863 3353 8.561738 TTTAGTTATTCATTCCTGGAACTCAC 57.438 34.615 12.11 3.43 0.00 3.51
2867 3357 1.699083 TCATTCCTGGAACTCACAGCA 59.301 47.619 12.11 0.00 34.65 4.41
2876 3366 2.029649 GGAACTCACAGCATGCAACATT 60.030 45.455 21.98 6.05 42.53 2.71
2881 3371 4.037803 ACTCACAGCATGCAACATTTTGTA 59.962 37.500 21.98 2.48 42.53 2.41
2895 3388 7.647715 GCAACATTTTGTAGCTTTGAGAACTTA 59.352 33.333 0.00 0.00 34.90 2.24
2901 3415 5.925509 TGTAGCTTTGAGAACTTACCTTGT 58.074 37.500 0.00 0.00 0.00 3.16
2921 3443 6.429692 CCTTGTCTGACAATGTGTATACCAAA 59.570 38.462 22.28 0.00 37.48 3.28
2965 3490 5.359576 AGTTAATTGTTGTGCCTTCAGTTCA 59.640 36.000 0.00 0.00 0.00 3.18
2971 3496 3.281727 TGTGCCTTCAGTTCAAGACTT 57.718 42.857 0.00 0.00 36.10 3.01
2975 3500 4.276926 GTGCCTTCAGTTCAAGACTTCAAT 59.723 41.667 0.00 0.00 36.10 2.57
2976 3501 4.276678 TGCCTTCAGTTCAAGACTTCAATG 59.723 41.667 0.00 0.00 36.10 2.82
2977 3502 4.276926 GCCTTCAGTTCAAGACTTCAATGT 59.723 41.667 0.00 0.00 36.10 2.71
2981 3533 7.012327 CCTTCAGTTCAAGACTTCAATGTGTAA 59.988 37.037 0.00 0.00 36.10 2.41
2991 3543 6.017400 ACTTCAATGTGTAAGGCAAATCAG 57.983 37.500 0.00 0.00 0.00 2.90
3014 3566 3.343617 CCCGTCAATTAGGCAGAAAGAA 58.656 45.455 0.00 0.00 0.00 2.52
3021 3573 7.746475 CGTCAATTAGGCAGAAAGAAAGTTTAG 59.254 37.037 0.00 0.00 0.00 1.85
3023 3575 8.784043 TCAATTAGGCAGAAAGAAAGTTTAGAC 58.216 33.333 0.00 0.00 0.00 2.59
3040 3592 9.696917 AAGTTTAGACAAAAGGCAATTAATGAG 57.303 29.630 0.00 0.00 0.00 2.90
3048 3600 8.739972 ACAAAAGGCAATTAATGAGTAACCTAG 58.260 33.333 0.00 0.00 0.00 3.02
3052 3604 5.008712 GGCAATTAATGAGTAACCTAGGTGC 59.991 44.000 17.14 11.88 0.00 5.01
3054 3606 6.458342 GCAATTAATGAGTAACCTAGGTGCAC 60.458 42.308 17.14 16.41 0.00 4.57
3077 3629 8.030744 CACTAGATGCCAGATTAATGAATCAG 57.969 38.462 5.56 0.00 43.51 2.90
3088 3640 8.834465 CAGATTAATGAATCAGGAGTTCGATTT 58.166 33.333 5.56 0.00 43.51 2.17
3091 3643 4.551702 TGAATCAGGAGTTCGATTTCCA 57.448 40.909 15.65 0.00 35.88 3.53
3093 3645 5.312895 TGAATCAGGAGTTCGATTTCCAAA 58.687 37.500 15.65 5.78 35.88 3.28
3128 3680 7.716799 AACCATGATAGCAAAACAAGGATTA 57.283 32.000 0.00 0.00 0.00 1.75
3163 3721 1.497991 GCTTCAGCACACGTCTAACA 58.502 50.000 0.00 0.00 41.59 2.41
3171 3729 2.034001 GCACACGTCTAACACACAAGTC 60.034 50.000 0.00 0.00 0.00 3.01
3189 3747 6.197842 CACAAGTCAAAAAGAGATTGCACTTC 59.802 38.462 0.00 0.00 31.72 3.01
3193 3751 6.772716 AGTCAAAAAGAGATTGCACTTCCTTA 59.227 34.615 0.00 0.00 0.00 2.69
3194 3752 7.449704 AGTCAAAAAGAGATTGCACTTCCTTAT 59.550 33.333 0.00 0.00 0.00 1.73
3195 3753 7.752686 GTCAAAAAGAGATTGCACTTCCTTATC 59.247 37.037 0.00 0.00 0.00 1.75
3226 3784 2.158841 CCAAACCACGATACCGAAACAG 59.841 50.000 0.00 0.00 39.50 3.16
3232 3790 3.372954 CACGATACCGAAACAGAGGATC 58.627 50.000 0.00 0.00 39.50 3.36
3233 3791 3.021695 ACGATACCGAAACAGAGGATCA 58.978 45.455 0.00 0.00 37.00 2.92
3234 3792 3.066900 ACGATACCGAAACAGAGGATCAG 59.933 47.826 0.00 0.00 37.00 2.90
3235 3793 3.066900 CGATACCGAAACAGAGGATCAGT 59.933 47.826 0.00 0.00 35.20 3.41
3236 3794 4.612943 GATACCGAAACAGAGGATCAGTC 58.387 47.826 0.00 0.00 31.77 3.51
3237 3795 2.248248 ACCGAAACAGAGGATCAGTCA 58.752 47.619 0.00 0.00 31.77 3.41
3238 3796 2.834549 ACCGAAACAGAGGATCAGTCAT 59.165 45.455 0.00 0.00 31.77 3.06
3239 3797 3.118956 ACCGAAACAGAGGATCAGTCATC 60.119 47.826 0.00 0.00 31.77 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.140161 CGCGAGGAATCCAACGGTA 59.860 57.895 17.17 0.00 0.00 4.02
29 30 6.115446 TCAGCATGGTATCTAGTTTTGAAGG 58.885 40.000 0.00 0.00 36.16 3.46
44 45 4.032960 TGTCAAAACCTATCAGCATGGT 57.967 40.909 0.00 0.00 36.16 3.55
98 105 4.636435 CCCGTGCTCCCGGTTTGT 62.636 66.667 0.00 0.00 46.66 2.83
126 145 1.821332 GGGCATGCCTCTTTCGGAG 60.821 63.158 34.70 0.00 41.51 4.63
160 179 1.626654 CGCTAGAGGCACGTTTGTGG 61.627 60.000 0.00 0.00 46.51 4.17
166 185 1.320344 TGATTCCGCTAGAGGCACGT 61.320 55.000 7.80 0.00 41.91 4.49
183 202 1.141019 GCGAGAGGCACGGTTATGA 59.859 57.895 0.00 0.00 42.87 2.15
186 205 4.124351 CCGCGAGAGGCACGGTTA 62.124 66.667 8.23 0.00 43.84 2.85
217 242 5.933790 TCGGAAATGGAAAATAAAGACGTG 58.066 37.500 0.00 0.00 0.00 4.49
220 245 6.183360 CCTCCTCGGAAATGGAAAATAAAGAC 60.183 42.308 0.00 0.00 33.16 3.01
221 246 5.885912 CCTCCTCGGAAATGGAAAATAAAGA 59.114 40.000 0.00 0.00 33.16 2.52
226 253 2.291540 TGCCTCCTCGGAAATGGAAAAT 60.292 45.455 0.00 0.00 33.16 1.82
256 285 1.081840 GTTGTGCTTTCGCCAGAGC 60.082 57.895 0.00 0.00 39.33 4.09
291 320 0.989890 CGCGAGAGGAACGGTTTTAG 59.010 55.000 0.00 0.00 0.00 1.85
292 321 0.314935 ACGCGAGAGGAACGGTTTTA 59.685 50.000 15.93 0.00 0.00 1.52
383 525 2.463589 TTTGGTTCCGCGAGAGGCAT 62.464 55.000 8.23 0.00 43.84 4.40
398 540 2.966309 GCGAGAGGCACGGTTTTGG 61.966 63.158 0.00 0.00 42.87 3.28
433 687 4.298332 CCTCTTGGAAACGGAAAAATGTG 58.702 43.478 0.00 0.00 34.57 3.21
435 689 3.243704 TGCCTCTTGGAAACGGAAAAATG 60.244 43.478 0.00 0.00 34.57 2.32
486 748 4.367039 TTTTTCCTCCCGTGAGAGAAAT 57.633 40.909 10.56 0.00 41.42 2.17
529 814 3.531538 GTGACTGTGACTCTTGGAAACA 58.468 45.455 0.00 0.00 39.83 2.83
530 815 2.540101 CGTGACTGTGACTCTTGGAAAC 59.460 50.000 0.00 0.00 0.00 2.78
531 816 2.821546 CGTGACTGTGACTCTTGGAAA 58.178 47.619 0.00 0.00 0.00 3.13
534 819 0.946221 GGCGTGACTGTGACTCTTGG 60.946 60.000 0.00 0.00 0.00 3.61
536 821 1.367840 GGGCGTGACTGTGACTCTT 59.632 57.895 0.00 0.00 0.00 2.85
539 824 3.224324 ACGGGCGTGACTGTGACT 61.224 61.111 0.00 0.00 0.00 3.41
552 837 1.738099 CTTCCGCAAGAGTCACGGG 60.738 63.158 16.29 4.57 46.87 5.28
563 848 4.947388 AGAGGCATTATTTTTACTTCCGCA 59.053 37.500 0.00 0.00 0.00 5.69
567 852 6.315393 TCCACGAGAGGCATTATTTTTACTTC 59.685 38.462 0.00 0.00 0.00 3.01
571 856 5.065988 GCTTCCACGAGAGGCATTATTTTTA 59.934 40.000 8.88 0.00 46.54 1.52
573 858 3.378427 GCTTCCACGAGAGGCATTATTTT 59.622 43.478 8.88 0.00 46.54 1.82
575 860 2.565841 GCTTCCACGAGAGGCATTATT 58.434 47.619 8.88 0.00 46.54 1.40
576 861 2.246719 GCTTCCACGAGAGGCATTAT 57.753 50.000 8.88 0.00 46.54 1.28
577 862 3.760693 GCTTCCACGAGAGGCATTA 57.239 52.632 8.88 0.00 46.54 1.90
578 863 4.625800 GCTTCCACGAGAGGCATT 57.374 55.556 8.88 0.00 46.54 3.56
642 935 6.038492 CCAACGGTCTTACTTAACTTTTGGAA 59.962 38.462 0.00 0.00 33.05 3.53
674 967 4.512571 CGGTCTTTCCTAACTTCGGAAAAA 59.487 41.667 8.45 0.00 46.59 1.94
675 968 4.060205 CGGTCTTTCCTAACTTCGGAAAA 58.940 43.478 8.45 0.00 46.59 2.29
676 969 3.555586 CCGGTCTTTCCTAACTTCGGAAA 60.556 47.826 7.18 7.18 45.57 3.13
677 970 2.028748 CCGGTCTTTCCTAACTTCGGAA 60.029 50.000 0.00 0.00 38.71 4.30
678 971 1.547372 CCGGTCTTTCCTAACTTCGGA 59.453 52.381 0.00 0.00 38.64 4.55
679 972 1.274447 ACCGGTCTTTCCTAACTTCGG 59.726 52.381 0.00 0.00 41.65 4.30
680 973 2.029649 TCACCGGTCTTTCCTAACTTCG 60.030 50.000 2.59 0.00 0.00 3.79
681 974 3.672767 TCACCGGTCTTTCCTAACTTC 57.327 47.619 2.59 0.00 0.00 3.01
682 975 4.426736 TTTCACCGGTCTTTCCTAACTT 57.573 40.909 2.59 0.00 0.00 2.66
683 976 4.132336 GTTTTCACCGGTCTTTCCTAACT 58.868 43.478 2.59 0.00 0.00 2.24
684 977 3.251729 GGTTTTCACCGGTCTTTCCTAAC 59.748 47.826 2.59 2.46 31.60 2.34
685 978 3.479489 GGTTTTCACCGGTCTTTCCTAA 58.521 45.455 2.59 0.00 31.60 2.69
686 979 3.130280 GGTTTTCACCGGTCTTTCCTA 57.870 47.619 2.59 0.00 31.60 2.94
687 980 1.977056 GGTTTTCACCGGTCTTTCCT 58.023 50.000 2.59 0.00 31.60 3.36
697 990 0.100861 TCGGCGTTTTGGTTTTCACC 59.899 50.000 6.85 0.00 44.56 4.02
698 991 1.910688 TTCGGCGTTTTGGTTTTCAC 58.089 45.000 6.85 0.00 0.00 3.18
699 992 2.649331 TTTCGGCGTTTTGGTTTTCA 57.351 40.000 6.85 0.00 0.00 2.69
700 993 3.993508 TTTTTCGGCGTTTTGGTTTTC 57.006 38.095 6.85 0.00 0.00 2.29
740 1033 5.398603 TTCCACACATGTTGTCTGTTTTT 57.601 34.783 0.00 0.00 35.67 1.94
741 1034 5.398603 TTTCCACACATGTTGTCTGTTTT 57.601 34.783 0.00 0.00 35.67 2.43
742 1035 5.398603 TTTTCCACACATGTTGTCTGTTT 57.601 34.783 0.00 0.00 35.67 2.83
743 1036 5.596836 ATTTTCCACACATGTTGTCTGTT 57.403 34.783 0.00 0.00 35.67 3.16
744 1037 6.707440 TTATTTTCCACACATGTTGTCTGT 57.293 33.333 0.00 0.00 35.67 3.41
745 1038 8.592105 ATTTTATTTTCCACACATGTTGTCTG 57.408 30.769 0.00 0.00 35.67 3.51
772 1065 4.514401 AGCGTATCCTCCGAATTCTTTTT 58.486 39.130 3.52 0.00 0.00 1.94
773 1066 4.120589 GAGCGTATCCTCCGAATTCTTTT 58.879 43.478 3.52 0.00 0.00 2.27
774 1067 3.132289 TGAGCGTATCCTCCGAATTCTTT 59.868 43.478 3.52 0.00 0.00 2.52
775 1068 2.693591 TGAGCGTATCCTCCGAATTCTT 59.306 45.455 3.52 0.00 0.00 2.52
776 1069 2.307768 TGAGCGTATCCTCCGAATTCT 58.692 47.619 3.52 0.00 0.00 2.40
777 1070 2.795175 TGAGCGTATCCTCCGAATTC 57.205 50.000 0.00 0.00 0.00 2.17
778 1071 3.458189 CTTTGAGCGTATCCTCCGAATT 58.542 45.455 0.00 0.00 0.00 2.17
779 1072 2.803492 GCTTTGAGCGTATCCTCCGAAT 60.803 50.000 0.00 0.00 0.00 3.34
780 1073 1.470979 GCTTTGAGCGTATCCTCCGAA 60.471 52.381 0.00 0.00 0.00 4.30
781 1074 0.102481 GCTTTGAGCGTATCCTCCGA 59.898 55.000 0.00 0.00 0.00 4.55
782 1075 2.594541 GCTTTGAGCGTATCCTCCG 58.405 57.895 0.00 0.00 0.00 4.63
792 1085 0.442310 TTATGTGTCGCGCTTTGAGC 59.558 50.000 5.56 0.00 38.02 4.26
793 1086 1.061131 CCTTATGTGTCGCGCTTTGAG 59.939 52.381 5.56 0.00 0.00 3.02
794 1087 1.075542 CCTTATGTGTCGCGCTTTGA 58.924 50.000 5.56 0.00 0.00 2.69
795 1088 1.075542 TCCTTATGTGTCGCGCTTTG 58.924 50.000 5.56 0.00 0.00 2.77
796 1089 1.732259 CTTCCTTATGTGTCGCGCTTT 59.268 47.619 5.56 0.00 0.00 3.51
797 1090 1.359848 CTTCCTTATGTGTCGCGCTT 58.640 50.000 5.56 0.00 0.00 4.68
798 1091 0.460284 CCTTCCTTATGTGTCGCGCT 60.460 55.000 5.56 0.00 0.00 5.92
799 1092 1.429148 CCCTTCCTTATGTGTCGCGC 61.429 60.000 0.00 0.00 0.00 6.86
800 1093 1.429148 GCCCTTCCTTATGTGTCGCG 61.429 60.000 0.00 0.00 0.00 5.87
801 1094 1.095807 GGCCCTTCCTTATGTGTCGC 61.096 60.000 0.00 0.00 0.00 5.19
802 1095 0.810031 CGGCCCTTCCTTATGTGTCG 60.810 60.000 0.00 0.00 0.00 4.35
803 1096 0.539986 TCGGCCCTTCCTTATGTGTC 59.460 55.000 0.00 0.00 0.00 3.67
804 1097 0.988832 TTCGGCCCTTCCTTATGTGT 59.011 50.000 0.00 0.00 0.00 3.72
805 1098 2.017049 CTTTCGGCCCTTCCTTATGTG 58.983 52.381 0.00 0.00 0.00 3.21
806 1099 1.682087 GCTTTCGGCCCTTCCTTATGT 60.682 52.381 0.00 0.00 34.27 2.29
807 1100 1.025041 GCTTTCGGCCCTTCCTTATG 58.975 55.000 0.00 0.00 34.27 1.90
808 1101 0.623723 TGCTTTCGGCCCTTCCTTAT 59.376 50.000 0.00 0.00 40.92 1.73
809 1102 0.322187 GTGCTTTCGGCCCTTCCTTA 60.322 55.000 0.00 0.00 40.92 2.69
810 1103 1.603739 GTGCTTTCGGCCCTTCCTT 60.604 57.895 0.00 0.00 40.92 3.36
811 1104 2.034221 GTGCTTTCGGCCCTTCCT 59.966 61.111 0.00 0.00 40.92 3.36
812 1105 3.431725 CGTGCTTTCGGCCCTTCC 61.432 66.667 0.00 0.00 40.92 3.46
813 1106 2.668550 ACGTGCTTTCGGCCCTTC 60.669 61.111 0.00 0.00 40.92 3.46
814 1107 2.668550 GACGTGCTTTCGGCCCTT 60.669 61.111 0.00 0.00 40.92 3.95
815 1108 3.469863 TTGACGTGCTTTCGGCCCT 62.470 57.895 0.00 0.00 38.16 5.19
816 1109 2.966309 CTTGACGTGCTTTCGGCCC 61.966 63.158 0.00 0.00 38.16 5.80
817 1110 2.251642 ACTTGACGTGCTTTCGGCC 61.252 57.895 0.00 0.00 38.16 6.13
818 1111 1.082756 CACTTGACGTGCTTTCGGC 60.083 57.895 0.00 0.00 36.72 5.54
819 1112 1.569493 CCACTTGACGTGCTTTCGG 59.431 57.895 0.00 0.00 42.42 4.30
820 1113 1.082756 GCCACTTGACGTGCTTTCG 60.083 57.895 0.00 0.00 42.42 3.46
821 1114 1.082756 CGCCACTTGACGTGCTTTC 60.083 57.895 0.00 0.00 42.42 2.62
822 1115 1.373590 AACGCCACTTGACGTGCTTT 61.374 50.000 0.00 0.00 42.68 3.51
823 1116 1.817941 AACGCCACTTGACGTGCTT 60.818 52.632 0.00 0.00 42.68 3.91
824 1117 2.203015 AACGCCACTTGACGTGCT 60.203 55.556 0.00 0.00 42.68 4.40
825 1118 1.841663 ATCAACGCCACTTGACGTGC 61.842 55.000 0.00 0.00 42.68 5.34
826 1119 1.390123 CTATCAACGCCACTTGACGTG 59.610 52.381 0.00 0.00 42.68 4.49
827 1120 1.000506 ACTATCAACGCCACTTGACGT 59.999 47.619 0.00 0.00 46.07 4.34
828 1121 1.710013 ACTATCAACGCCACTTGACG 58.290 50.000 0.00 0.00 32.95 4.35
829 1122 2.806244 ACAACTATCAACGCCACTTGAC 59.194 45.455 0.00 0.00 32.95 3.18
830 1123 2.805671 CACAACTATCAACGCCACTTGA 59.194 45.455 0.00 0.00 34.65 3.02
831 1124 2.805671 TCACAACTATCAACGCCACTTG 59.194 45.455 0.00 0.00 0.00 3.16
832 1125 3.067106 CTCACAACTATCAACGCCACTT 58.933 45.455 0.00 0.00 0.00 3.16
833 1126 2.688507 CTCACAACTATCAACGCCACT 58.311 47.619 0.00 0.00 0.00 4.00
834 1127 1.128692 GCTCACAACTATCAACGCCAC 59.871 52.381 0.00 0.00 0.00 5.01
835 1128 1.438651 GCTCACAACTATCAACGCCA 58.561 50.000 0.00 0.00 0.00 5.69
836 1129 0.370273 CGCTCACAACTATCAACGCC 59.630 55.000 0.00 0.00 0.00 5.68
837 1130 0.247301 GCGCTCACAACTATCAACGC 60.247 55.000 0.00 0.00 38.17 4.84
838 1131 0.023732 CGCGCTCACAACTATCAACG 59.976 55.000 5.56 0.00 0.00 4.10
839 1132 1.059264 GTCGCGCTCACAACTATCAAC 59.941 52.381 5.56 0.00 0.00 3.18
840 1133 1.336424 TGTCGCGCTCACAACTATCAA 60.336 47.619 5.56 0.00 0.00 2.57
841 1134 0.242555 TGTCGCGCTCACAACTATCA 59.757 50.000 5.56 0.00 0.00 2.15
842 1135 0.640768 GTGTCGCGCTCACAACTATC 59.359 55.000 22.34 3.73 36.05 2.08
843 1136 1.071019 CGTGTCGCGCTCACAACTAT 61.071 55.000 24.98 0.00 35.79 2.12
844 1137 1.728074 CGTGTCGCGCTCACAACTA 60.728 57.895 24.98 0.00 35.79 2.24
845 1138 2.396747 TACGTGTCGCGCTCACAACT 62.397 55.000 24.98 13.98 46.11 3.16
846 1139 1.542272 TTACGTGTCGCGCTCACAAC 61.542 55.000 24.98 10.02 46.11 3.32
847 1140 1.299240 TTACGTGTCGCGCTCACAA 60.299 52.632 24.98 14.82 46.11 3.33
848 1141 2.012414 GTTACGTGTCGCGCTCACA 61.012 57.895 24.98 16.44 46.11 3.58
849 1142 2.713894 GGTTACGTGTCGCGCTCAC 61.714 63.158 19.09 19.09 46.11 3.51
850 1143 1.576451 TAGGTTACGTGTCGCGCTCA 61.576 55.000 5.56 1.29 46.11 4.26
851 1144 0.860618 CTAGGTTACGTGTCGCGCTC 60.861 60.000 5.56 0.00 46.11 5.03
852 1145 1.136147 CTAGGTTACGTGTCGCGCT 59.864 57.895 5.56 0.00 46.11 5.92
853 1146 2.502965 GCTAGGTTACGTGTCGCGC 61.503 63.158 0.00 0.00 46.11 6.86
854 1147 2.839324 ACGCTAGGTTACGTGTCGCG 62.839 60.000 0.00 0.00 41.76 5.87
855 1148 1.130458 GACGCTAGGTTACGTGTCGC 61.130 60.000 0.00 0.00 43.71 5.19
856 1149 0.445436 AGACGCTAGGTTACGTGTCG 59.555 55.000 0.00 0.00 43.71 4.35
857 1150 2.416547 TGTAGACGCTAGGTTACGTGTC 59.583 50.000 0.00 0.00 43.71 3.67
858 1151 2.426522 TGTAGACGCTAGGTTACGTGT 58.573 47.619 0.00 0.00 43.71 4.49
859 1152 3.687572 ATGTAGACGCTAGGTTACGTG 57.312 47.619 0.00 0.00 43.71 4.49
860 1153 3.181493 CCAATGTAGACGCTAGGTTACGT 60.181 47.826 0.00 0.00 46.91 3.57
861 1154 3.369385 CCAATGTAGACGCTAGGTTACG 58.631 50.000 0.00 0.00 0.00 3.18
869 1162 0.460284 CGAAGCCCAATGTAGACGCT 60.460 55.000 0.00 0.00 0.00 5.07
876 1169 0.252197 GGGACTACGAAGCCCAATGT 59.748 55.000 0.00 0.00 38.35 2.71
880 1173 3.766691 GCGGGACTACGAAGCCCA 61.767 66.667 0.00 0.00 38.36 5.36
894 1187 2.202610 TGATTCAGTCGCTCGCGG 60.203 61.111 6.13 0.00 40.25 6.46
897 1190 2.990735 GCGTGATTCAGTCGCTCG 59.009 61.111 12.77 1.85 45.29 5.03
906 1199 0.392461 TAACAGGCCCAGCGTGATTC 60.392 55.000 15.44 0.00 45.68 2.52
936 1229 2.638480 TGTGTGTCTTCTTCCTTGGG 57.362 50.000 0.00 0.00 0.00 4.12
939 1232 3.281727 TGCTTGTGTGTCTTCTTCCTT 57.718 42.857 0.00 0.00 0.00 3.36
972 1266 0.827368 AGAGGGGAAGAAGACGATGC 59.173 55.000 0.00 0.00 0.00 3.91
1131 1428 1.756561 GAGAGCGAGGAGAAGGGCT 60.757 63.158 0.00 0.00 38.70 5.19
1164 1461 5.011329 ACCATTAGAACCTGTCGTAACTCAA 59.989 40.000 0.00 0.00 0.00 3.02
1165 1462 4.525487 ACCATTAGAACCTGTCGTAACTCA 59.475 41.667 0.00 0.00 0.00 3.41
1166 1463 4.863131 CACCATTAGAACCTGTCGTAACTC 59.137 45.833 0.00 0.00 0.00 3.01
1167 1464 4.817517 CACCATTAGAACCTGTCGTAACT 58.182 43.478 0.00 0.00 0.00 2.24
1168 1465 3.370061 GCACCATTAGAACCTGTCGTAAC 59.630 47.826 0.00 0.00 0.00 2.50
1169 1466 3.592059 GCACCATTAGAACCTGTCGTAA 58.408 45.455 0.00 0.00 0.00 3.18
1181 1479 3.202001 CCACCGCGGCACCATTAG 61.202 66.667 28.58 4.75 0.00 1.73
1302 1610 2.756400 CAGGCAGTACCAAGGGCA 59.244 61.111 0.00 0.00 43.14 5.36
1308 1616 0.698238 AATGGAAGCAGGCAGTACCA 59.302 50.000 0.00 0.00 43.14 3.25
1346 1663 0.737715 TTGTTGTTGTTGTTGCGGGC 60.738 50.000 0.00 0.00 0.00 6.13
1389 1731 1.785768 TTTGCGCGCTCTACAAACTA 58.214 45.000 33.29 4.14 0.00 2.24
1390 1732 1.156736 ATTTGCGCGCTCTACAAACT 58.843 45.000 33.29 8.18 36.22 2.66
1392 1736 2.697431 AAATTTGCGCGCTCTACAAA 57.303 40.000 33.29 23.17 37.66 2.83
1394 1738 2.343101 ACTAAATTTGCGCGCTCTACA 58.657 42.857 33.29 8.62 0.00 2.74
1400 1744 4.490890 CAGTAACTAACTAAATTTGCGCGC 59.509 41.667 27.26 27.26 35.76 6.86
1456 1809 6.486253 TCAGAGCATTGTGAATAACAGAAC 57.514 37.500 0.00 0.00 40.74 3.01
1487 1843 3.168292 CTCAAAATCTTCCCCTTTGGCT 58.832 45.455 0.00 0.00 32.17 4.75
1498 1854 3.664107 TCGTAGCTGTGCTCAAAATCTT 58.336 40.909 0.00 0.00 40.44 2.40
1520 1876 7.339976 TCTGAATCAATGTCCTATGCAATGAAA 59.660 33.333 0.00 0.00 30.74 2.69
1547 1912 8.432013 TGTCTGAAGACCATTATATACTGCAAT 58.568 33.333 7.96 0.00 44.15 3.56
1576 1942 6.256321 GGTGCATAAACATTTGATTAAGCTGG 59.744 38.462 8.54 0.00 31.35 4.85
1611 2001 6.092748 CCAAAAGCGTATTTTTATGAGCAGT 58.907 36.000 0.00 0.00 0.00 4.40
1614 2004 6.806739 AGAACCAAAAGCGTATTTTTATGAGC 59.193 34.615 0.00 0.00 0.00 4.26
1629 2039 6.611381 TCGCAGATGAAATAAGAACCAAAAG 58.389 36.000 0.00 0.00 0.00 2.27
1634 2050 4.631813 ACACTCGCAGATGAAATAAGAACC 59.368 41.667 0.00 0.00 33.89 3.62
1642 2058 5.009854 TCATCATACACTCGCAGATGAAA 57.990 39.130 0.00 0.00 41.30 2.69
1662 2078 3.368843 GGTGAGAGCTGCTACATCTTTCA 60.369 47.826 0.15 0.00 0.00 2.69
1700 2117 0.179215 GACATTGAGCGAGCAAACGG 60.179 55.000 0.00 0.00 0.00 4.44
1701 2118 0.792640 AGACATTGAGCGAGCAAACG 59.207 50.000 0.00 0.00 0.00 3.60
1703 2120 1.806542 GGAAGACATTGAGCGAGCAAA 59.193 47.619 0.00 0.00 0.00 3.68
1705 2122 0.610174 AGGAAGACATTGAGCGAGCA 59.390 50.000 0.00 0.00 0.00 4.26
1706 2123 1.663135 GAAGGAAGACATTGAGCGAGC 59.337 52.381 0.00 0.00 0.00 5.03
1707 2124 2.670414 GTGAAGGAAGACATTGAGCGAG 59.330 50.000 0.00 0.00 0.00 5.03
1709 2126 2.693069 AGTGAAGGAAGACATTGAGCG 58.307 47.619 0.00 0.00 0.00 5.03
1777 2220 4.803088 TGTTTGAAATCTTCCAGCAAAACG 59.197 37.500 0.00 0.00 31.19 3.60
1804 2247 6.732896 TCAAGTGAGGTTTCTTCTCTTAGT 57.267 37.500 0.00 0.00 32.78 2.24
1865 2308 2.597305 CGACACTAACATCCGTAACAGC 59.403 50.000 0.00 0.00 0.00 4.40
1954 2398 3.134458 CTGCTTTCGTTTCCTCTTGACT 58.866 45.455 0.00 0.00 0.00 3.41
1990 2434 4.115516 ACTGATCGGATTCTCAAATGACG 58.884 43.478 9.00 0.00 0.00 4.35
2001 2445 2.107950 TCGGCAAAACTGATCGGATT 57.892 45.000 9.00 0.00 0.00 3.01
2015 2460 8.019094 GCTAAATTTAACTAAACTTCTTCGGCA 58.981 33.333 0.00 0.00 0.00 5.69
2062 2509 6.150976 CCAGCACAAGATGTAAGATTTTACCA 59.849 38.462 3.86 0.00 38.71 3.25
2065 2512 7.665559 AGTTCCAGCACAAGATGTAAGATTTTA 59.334 33.333 0.00 0.00 0.00 1.52
2066 2513 6.491403 AGTTCCAGCACAAGATGTAAGATTTT 59.509 34.615 0.00 0.00 0.00 1.82
2067 2514 6.006449 AGTTCCAGCACAAGATGTAAGATTT 58.994 36.000 0.00 0.00 0.00 2.17
2068 2515 5.564550 AGTTCCAGCACAAGATGTAAGATT 58.435 37.500 0.00 0.00 0.00 2.40
2069 2516 5.171339 AGTTCCAGCACAAGATGTAAGAT 57.829 39.130 0.00 0.00 0.00 2.40
2070 2517 4.623932 AGTTCCAGCACAAGATGTAAGA 57.376 40.909 0.00 0.00 0.00 2.10
2071 2518 4.614535 GCAAGTTCCAGCACAAGATGTAAG 60.615 45.833 0.00 0.00 0.00 2.34
2087 2538 7.073342 AGTTCCGAAAACATATAGCAAGTTC 57.927 36.000 3.92 0.00 0.00 3.01
2096 2547 6.575162 AGAAGCAAAGTTCCGAAAACATAT 57.425 33.333 3.92 0.00 0.00 1.78
2120 2571 3.621715 GCATCGTAAGGAACCTCGAAAAT 59.378 43.478 8.32 0.00 35.99 1.82
2195 2646 8.885722 TCGCTAGTTTTTCTTCTTTTCTTGTTA 58.114 29.630 0.00 0.00 0.00 2.41
2216 2667 1.899054 CCGCCATCTCCTCTCGCTA 60.899 63.158 0.00 0.00 0.00 4.26
2230 2681 0.949105 ATCGGTTTATGATCGCCGCC 60.949 55.000 0.00 0.00 43.45 6.13
2245 2696 5.539582 TTTAGGAAAATCGTCACAATCGG 57.460 39.130 0.00 0.00 0.00 4.18
2252 2703 3.863424 CGCTAGCTTTAGGAAAATCGTCA 59.137 43.478 13.93 0.00 0.00 4.35
2276 2727 1.317613 TTTGTGGTGCTTGCACTAGG 58.682 50.000 22.55 0.00 0.00 3.02
2293 2744 4.744570 TCTATCTTGCTCGACGACATTTT 58.255 39.130 0.00 0.00 0.00 1.82
2294 2745 4.371855 TCTATCTTGCTCGACGACATTT 57.628 40.909 0.00 0.00 0.00 2.32
2295 2746 4.576216 ATCTATCTTGCTCGACGACATT 57.424 40.909 0.00 0.00 0.00 2.71
2303 2754 6.364945 TCCGTATCATATCTATCTTGCTCG 57.635 41.667 0.00 0.00 0.00 5.03
2313 2764 3.766591 CTCCAAGCCTCCGTATCATATCT 59.233 47.826 0.00 0.00 0.00 1.98
2314 2765 3.677424 GCTCCAAGCCTCCGTATCATATC 60.677 52.174 0.00 0.00 34.48 1.63
2315 2766 2.234908 GCTCCAAGCCTCCGTATCATAT 59.765 50.000 0.00 0.00 34.48 1.78
2316 2767 1.618837 GCTCCAAGCCTCCGTATCATA 59.381 52.381 0.00 0.00 34.48 2.15
2317 2768 0.394565 GCTCCAAGCCTCCGTATCAT 59.605 55.000 0.00 0.00 34.48 2.45
2318 2769 0.687757 AGCTCCAAGCCTCCGTATCA 60.688 55.000 0.00 0.00 43.77 2.15
2319 2770 0.249657 CAGCTCCAAGCCTCCGTATC 60.250 60.000 0.00 0.00 43.77 2.24
2320 2771 1.826024 CAGCTCCAAGCCTCCGTAT 59.174 57.895 0.00 0.00 43.77 3.06
2321 2772 3.019003 GCAGCTCCAAGCCTCCGTA 62.019 63.158 0.00 0.00 43.77 4.02
2322 2773 4.400961 GCAGCTCCAAGCCTCCGT 62.401 66.667 0.00 0.00 43.77 4.69
2323 2774 4.093291 AGCAGCTCCAAGCCTCCG 62.093 66.667 0.00 0.00 43.77 4.63
2359 2815 4.024641 GCGAAGAAAAGTCGGAAAGGTAAA 60.025 41.667 0.00 0.00 38.93 2.01
2370 2839 2.171341 ACTCCAGGCGAAGAAAAGTC 57.829 50.000 0.00 0.00 0.00 3.01
2382 2851 0.895530 TCGCCTCTTGTTACTCCAGG 59.104 55.000 0.00 0.00 0.00 4.45
2409 2878 6.448202 AGGGGCATCTATATATCTGCTAGTT 58.552 40.000 13.40 0.40 35.03 2.24
2452 2921 5.923684 TGGTTAAATCCATTCAGCGAAAAAC 59.076 36.000 0.00 0.00 31.96 2.43
2453 2922 6.090483 TGGTTAAATCCATTCAGCGAAAAA 57.910 33.333 0.00 0.00 31.96 1.94
2458 2928 3.129287 AGCTTGGTTAAATCCATTCAGCG 59.871 43.478 0.00 0.00 41.20 5.18
2470 2940 4.761739 CCTTTCATCAGTGAGCTTGGTTAA 59.238 41.667 0.00 0.00 35.39 2.01
2496 2966 3.741344 GCTACGCAGGGTGACATTTATAG 59.259 47.826 0.00 0.00 0.00 1.31
2502 2972 1.961180 GAGGCTACGCAGGGTGACAT 61.961 60.000 0.00 0.00 0.00 3.06
2508 2978 0.759346 AATAAGGAGGCTACGCAGGG 59.241 55.000 0.00 0.00 0.00 4.45
2514 2984 2.999331 TGGTGCAAATAAGGAGGCTAC 58.001 47.619 0.00 0.00 0.00 3.58
2585 3064 3.893813 GAGCTCCCAGGAATAAATGCAAT 59.106 43.478 0.87 0.00 0.00 3.56
2645 3128 1.886542 AGAAATTCGTCCCAAAGCCAC 59.113 47.619 0.00 0.00 0.00 5.01
2664 3147 8.443937 GTCAGCTAAAACTGTTATACTTTGGAG 58.556 37.037 0.00 0.00 38.84 3.86
2684 3167 7.883311 ACCTTTACAAGTACATAATTGTCAGCT 59.117 33.333 7.92 0.00 42.61 4.24
2715 3198 9.815306 TCACTAGAGAGCTTGGTTATATATTCT 57.185 33.333 0.00 0.00 0.00 2.40
2723 3207 6.665992 TTCTTTCACTAGAGAGCTTGGTTA 57.334 37.500 0.00 0.00 0.00 2.85
2751 3235 3.581163 TGCACATGATGATGCAGGT 57.419 47.368 15.29 0.00 46.63 4.00
2755 3239 3.318275 AGAAGGATTGCACATGATGATGC 59.682 43.478 0.00 6.25 42.40 3.91
2756 3240 5.299531 AGAAGAAGGATTGCACATGATGATG 59.700 40.000 0.00 0.00 35.49 3.07
2757 3241 5.446860 AGAAGAAGGATTGCACATGATGAT 58.553 37.500 0.00 0.00 0.00 2.45
2774 3264 3.620488 ACTGACTTGGTGCAAAGAAGAA 58.380 40.909 5.15 0.00 0.00 2.52
2793 3283 7.823799 CAGCCATAACATCCCAAAATTAAAACT 59.176 33.333 0.00 0.00 0.00 2.66
2794 3284 7.606073 ACAGCCATAACATCCCAAAATTAAAAC 59.394 33.333 0.00 0.00 0.00 2.43
2795 3285 7.605691 CACAGCCATAACATCCCAAAATTAAAA 59.394 33.333 0.00 0.00 0.00 1.52
2800 3290 3.118665 GCACAGCCATAACATCCCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
2808 3298 2.100252 GAGCAATGCACAGCCATAACAT 59.900 45.455 8.35 0.00 0.00 2.71
2812 3302 1.951602 GATGAGCAATGCACAGCCATA 59.048 47.619 9.66 0.00 32.12 2.74
2815 3305 0.381089 GAGATGAGCAATGCACAGCC 59.619 55.000 16.51 8.24 36.30 4.85
2817 3307 4.371855 AAATGAGATGAGCAATGCACAG 57.628 40.909 11.43 0.00 32.12 3.66
2840 3330 7.252612 TGTGAGTTCCAGGAATGAATAACTA 57.747 36.000 4.80 0.00 0.00 2.24
2844 3334 4.019411 TGCTGTGAGTTCCAGGAATGAATA 60.019 41.667 4.80 0.00 0.00 1.75
2863 3353 3.984018 GCTACAAAATGTTGCATGCTG 57.016 42.857 20.33 9.29 45.86 4.41
2876 3366 6.826741 ACAAGGTAAGTTCTCAAAGCTACAAA 59.173 34.615 0.00 0.00 0.00 2.83
2881 3371 5.059833 CAGACAAGGTAAGTTCTCAAAGCT 58.940 41.667 0.00 0.00 0.00 3.74
2901 3415 5.942826 TGCATTTGGTATACACATTGTCAGA 59.057 36.000 5.01 0.00 0.00 3.27
2965 3490 6.265196 TGATTTGCCTTACACATTGAAGTCTT 59.735 34.615 0.00 0.00 0.00 3.01
2971 3496 3.193267 GCCTGATTTGCCTTACACATTGA 59.807 43.478 0.00 0.00 0.00 2.57
2975 3500 1.544724 GGCCTGATTTGCCTTACACA 58.455 50.000 0.00 0.00 45.70 3.72
2991 3543 0.393808 TTCTGCCTAATTGACGGGCC 60.394 55.000 0.00 0.00 44.71 5.80
2996 3548 8.784043 TCTAAACTTTCTTTCTGCCTAATTGAC 58.216 33.333 0.00 0.00 0.00 3.18
3014 3566 9.696917 CTCATTAATTGCCTTTTGTCTAAACTT 57.303 29.630 0.00 0.00 0.00 2.66
3021 3573 7.602753 AGGTTACTCATTAATTGCCTTTTGTC 58.397 34.615 0.00 0.00 0.00 3.18
3023 3575 8.190784 CCTAGGTTACTCATTAATTGCCTTTTG 58.809 37.037 0.00 0.00 0.00 2.44
3052 3604 7.974482 TGATTCATTAATCTGGCATCTAGTG 57.026 36.000 1.53 0.00 41.83 2.74
3062 3614 7.959689 ATCGAACTCCTGATTCATTAATCTG 57.040 36.000 1.53 1.11 41.83 2.90
3063 3615 8.970859 AAATCGAACTCCTGATTCATTAATCT 57.029 30.769 1.53 0.00 41.83 2.40
3064 3616 8.286097 GGAAATCGAACTCCTGATTCATTAATC 58.714 37.037 8.54 0.00 41.69 1.75
3065 3617 7.775093 TGGAAATCGAACTCCTGATTCATTAAT 59.225 33.333 15.11 0.00 33.85 1.40
3077 3629 5.371115 TTGATGTTTGGAAATCGAACTCC 57.629 39.130 8.81 8.81 39.83 3.85
3088 3640 4.406972 TCATGGTTTGGTTTGATGTTTGGA 59.593 37.500 0.00 0.00 0.00 3.53
3091 3643 6.165577 GCTATCATGGTTTGGTTTGATGTTT 58.834 36.000 0.00 0.00 31.59 2.83
3093 3645 4.771577 TGCTATCATGGTTTGGTTTGATGT 59.228 37.500 0.00 0.00 31.59 3.06
3128 3680 4.573900 CTGAAGCACAAGATAGGAAGTGT 58.426 43.478 0.00 0.00 34.59 3.55
3152 3710 3.513680 TGACTTGTGTGTTAGACGTGT 57.486 42.857 0.00 0.00 0.00 4.49
3162 3720 5.230726 GTGCAATCTCTTTTTGACTTGTGTG 59.769 40.000 0.00 0.00 0.00 3.82
3163 3721 5.126061 AGTGCAATCTCTTTTTGACTTGTGT 59.874 36.000 0.00 0.00 0.00 3.72
3171 3729 7.596494 TGATAAGGAAGTGCAATCTCTTTTTG 58.404 34.615 7.14 0.00 0.00 2.44
3189 3747 5.297776 GTGGTTTGGTCTGATGATGATAAGG 59.702 44.000 0.00 0.00 0.00 2.69
3193 3751 3.055167 TCGTGGTTTGGTCTGATGATGAT 60.055 43.478 0.00 0.00 0.00 2.45
3194 3752 2.301583 TCGTGGTTTGGTCTGATGATGA 59.698 45.455 0.00 0.00 0.00 2.92
3195 3753 2.698803 TCGTGGTTTGGTCTGATGATG 58.301 47.619 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.