Multiple sequence alignment - TraesCS7B01G500300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G500300 chr7B 100.000 8070 0 0 1 8070 750080772 750088841 0.000000e+00 14903.0
1 TraesCS7B01G500300 chr7B 100.000 35 0 0 6366 6400 750577280 750577314 1.880000e-06 65.8
2 TraesCS7B01G500300 chr7A 90.811 3145 175 40 2833 5926 733333264 733330183 0.000000e+00 4102.0
3 TraesCS7B01G500300 chr7A 88.938 1139 76 21 6213 7337 733330041 733328939 0.000000e+00 1360.0
4 TraesCS7B01G500300 chr7A 87.464 1037 77 27 1776 2794 733334262 733333261 0.000000e+00 1146.0
5 TraesCS7B01G500300 chr7A 85.666 886 74 20 6548 7423 733087779 733086937 0.000000e+00 883.0
6 TraesCS7B01G500300 chr7A 85.486 751 59 19 902 1636 733335385 733334669 0.000000e+00 737.0
7 TraesCS7B01G500300 chr7A 92.092 392 22 4 6593 6976 733248528 733248138 1.980000e-150 544.0
8 TraesCS7B01G500300 chr7A 92.442 344 20 2 6384 6726 733249104 733248766 3.390000e-133 486.0
9 TraesCS7B01G500300 chr7A 83.293 413 46 9 5591 6002 733112397 733112007 7.700000e-95 359.0
10 TraesCS7B01G500300 chr7A 84.320 338 38 7 7679 8013 733328568 733328243 4.700000e-82 316.0
11 TraesCS7B01G500300 chr7A 89.732 224 12 5 6335 6553 733092794 733092577 7.980000e-70 276.0
12 TraesCS7B01G500300 chr7A 92.793 111 7 1 6228 6338 733098932 733098823 8.380000e-35 159.0
13 TraesCS7B01G500300 chr7A 90.476 63 3 1 7427 7486 733086906 733086844 6.710000e-11 80.5
14 TraesCS7B01G500300 chr7D 88.446 2934 197 71 902 3758 633602292 633605160 0.000000e+00 3410.0
15 TraesCS7B01G500300 chr7D 89.318 2022 135 28 3941 5914 633605159 633607147 0.000000e+00 2462.0
16 TraesCS7B01G500300 chr7D 88.667 1103 58 23 6251 7337 633607226 633608277 0.000000e+00 1282.0
17 TraesCS7B01G500300 chr7D 91.892 888 42 14 1 880 242341617 242342482 0.000000e+00 1214.0
18 TraesCS7B01G500300 chr7D 91.242 902 48 11 1 894 137771486 137770608 0.000000e+00 1199.0
19 TraesCS7B01G500300 chr7D 89.053 338 31 4 7735 8070 633608636 633608969 1.620000e-111 414.0
20 TraesCS7B01G500300 chr6D 95.539 807 28 5 1 802 436929253 436928450 0.000000e+00 1284.0
21 TraesCS7B01G500300 chr6D 83.450 429 53 10 3960 4374 292295239 292295663 4.570000e-102 383.0
22 TraesCS7B01G500300 chr6D 82.540 252 33 8 1175 1420 292289994 292290240 2.280000e-50 211.0
23 TraesCS7B01G500300 chr4D 95.539 807 29 5 1 802 455297757 455296953 0.000000e+00 1284.0
24 TraesCS7B01G500300 chr4D 95.161 806 33 4 1 802 1721979 1721176 0.000000e+00 1267.0
25 TraesCS7B01G500300 chr4D 95.037 806 34 3 1 802 221417710 221416907 0.000000e+00 1262.0
26 TraesCS7B01G500300 chr4D 91.995 887 41 10 1 880 445157533 445156670 0.000000e+00 1218.0
27 TraesCS7B01G500300 chr3D 93.213 884 34 9 1 880 77407084 77406223 0.000000e+00 1277.0
28 TraesCS7B01G500300 chr3D 95.173 808 28 7 1 799 46602520 46603325 0.000000e+00 1266.0
29 TraesCS7B01G500300 chr3D 88.581 902 55 15 1 877 221844089 221844967 0.000000e+00 1051.0
30 TraesCS7B01G500300 chrUn 95.179 809 31 5 1 802 70274172 70274979 0.000000e+00 1271.0
31 TraesCS7B01G500300 chr1D 95.185 810 28 7 1 802 459436540 459437346 0.000000e+00 1269.0
32 TraesCS7B01G500300 chr1D 93.182 880 33 8 1 876 405136113 405136969 0.000000e+00 1267.0
33 TraesCS7B01G500300 chr1D 91.901 889 40 11 1 880 78092807 78093672 0.000000e+00 1214.0
34 TraesCS7B01G500300 chr2D 90.417 887 51 18 1 880 403804670 403803811 0.000000e+00 1136.0
35 TraesCS7B01G500300 chr6B 90.487 883 41 9 1 880 672857825 672858667 0.000000e+00 1125.0
36 TraesCS7B01G500300 chr6B 82.751 429 56 10 3960 4374 454732052 454732476 4.600000e-97 366.0
37 TraesCS7B01G500300 chr6B 90.062 161 16 0 1260 1420 454718217 454718377 8.210000e-50 209.0
38 TraesCS7B01G500300 chr2B 89.488 742 47 12 147 880 563370714 563371432 0.000000e+00 909.0
39 TraesCS7B01G500300 chr5A 87.264 424 19 14 470 880 186094260 186093859 1.240000e-122 451.0
40 TraesCS7B01G500300 chr3B 91.950 323 22 4 2276 2594 757888766 757889088 4.440000e-122 449.0
41 TraesCS7B01G500300 chr6A 82.284 429 58 10 3960 4374 430577596 430577172 9.960000e-94 355.0
42 TraesCS7B01G500300 chr6A 87.027 185 21 2 1242 1423 430593589 430593405 1.060000e-48 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G500300 chr7B 750080772 750088841 8069 False 14903.00 14903 100.0000 1 8070 1 chr7B.!!$F1 8069
1 TraesCS7B01G500300 chr7A 733328243 733335385 7142 True 1532.20 4102 87.4038 902 8013 5 chr7A.!!$R6 7111
2 TraesCS7B01G500300 chr7A 733248138 733249104 966 True 515.00 544 92.2670 6384 6976 2 chr7A.!!$R5 592
3 TraesCS7B01G500300 chr7A 733086844 733087779 935 True 481.75 883 88.0710 6548 7486 2 chr7A.!!$R4 938
4 TraesCS7B01G500300 chr7D 633602292 633608969 6677 False 1892.00 3410 88.8710 902 8070 4 chr7D.!!$F2 7168
5 TraesCS7B01G500300 chr7D 242341617 242342482 865 False 1214.00 1214 91.8920 1 880 1 chr7D.!!$F1 879
6 TraesCS7B01G500300 chr7D 137770608 137771486 878 True 1199.00 1199 91.2420 1 894 1 chr7D.!!$R1 893
7 TraesCS7B01G500300 chr6D 436928450 436929253 803 True 1284.00 1284 95.5390 1 802 1 chr6D.!!$R1 801
8 TraesCS7B01G500300 chr4D 455296953 455297757 804 True 1284.00 1284 95.5390 1 802 1 chr4D.!!$R4 801
9 TraesCS7B01G500300 chr4D 1721176 1721979 803 True 1267.00 1267 95.1610 1 802 1 chr4D.!!$R1 801
10 TraesCS7B01G500300 chr4D 221416907 221417710 803 True 1262.00 1262 95.0370 1 802 1 chr4D.!!$R2 801
11 TraesCS7B01G500300 chr4D 445156670 445157533 863 True 1218.00 1218 91.9950 1 880 1 chr4D.!!$R3 879
12 TraesCS7B01G500300 chr3D 77406223 77407084 861 True 1277.00 1277 93.2130 1 880 1 chr3D.!!$R1 879
13 TraesCS7B01G500300 chr3D 46602520 46603325 805 False 1266.00 1266 95.1730 1 799 1 chr3D.!!$F1 798
14 TraesCS7B01G500300 chr3D 221844089 221844967 878 False 1051.00 1051 88.5810 1 877 1 chr3D.!!$F2 876
15 TraesCS7B01G500300 chrUn 70274172 70274979 807 False 1271.00 1271 95.1790 1 802 1 chrUn.!!$F1 801
16 TraesCS7B01G500300 chr1D 459436540 459437346 806 False 1269.00 1269 95.1850 1 802 1 chr1D.!!$F3 801
17 TraesCS7B01G500300 chr1D 405136113 405136969 856 False 1267.00 1267 93.1820 1 876 1 chr1D.!!$F2 875
18 TraesCS7B01G500300 chr1D 78092807 78093672 865 False 1214.00 1214 91.9010 1 880 1 chr1D.!!$F1 879
19 TraesCS7B01G500300 chr2D 403803811 403804670 859 True 1136.00 1136 90.4170 1 880 1 chr2D.!!$R1 879
20 TraesCS7B01G500300 chr6B 672857825 672858667 842 False 1125.00 1125 90.4870 1 880 1 chr6B.!!$F3 879
21 TraesCS7B01G500300 chr2B 563370714 563371432 718 False 909.00 909 89.4880 147 880 1 chr2B.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 973 0.040514 TGCGCCACGATGTTTCTTTG 60.041 50.0 4.18 0.00 0.00 2.77 F
1433 1541 0.323816 TCCGGTCAGTCAGATCAGCT 60.324 55.0 0.00 0.00 0.00 4.24 F
2002 2391 0.312416 ACGACATAGATGCGCCTCTC 59.688 55.0 18.89 6.04 33.04 3.20 F
2656 3068 0.677731 GTGCATGCTGCTGTTCCCTA 60.678 55.0 20.33 0.00 45.31 3.53 F
4260 4697 1.059098 ACCTGAGCCATCACAGTTCA 58.941 50.0 0.00 0.00 32.93 3.18 F
5414 5907 0.609957 TGCTGCTGCTAACCATGCTT 60.610 50.0 17.00 0.00 40.48 3.91 F
6419 6933 0.388520 GTGTTTTCTTGCCCCGCATC 60.389 55.0 0.00 0.00 38.76 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2261 0.250858 TGCAGCACAGCATGGTAAGT 60.251 50.0 0.00 0.00 43.62 2.24 R
3272 3688 1.116308 TCAACCACAAGACTGACCGA 58.884 50.0 0.00 0.00 0.00 4.69 R
3928 4352 1.813513 AACTGATAGGTGTGTGCAGC 58.186 50.0 0.00 0.00 42.96 5.25 R
4465 4904 0.965866 GTTGCCAGGTAAGAAGGGGC 60.966 60.0 0.00 0.00 44.82 5.80 R
5482 5975 0.856982 ATGAAACCCCTGTCCACCAA 59.143 50.0 0.00 0.00 0.00 3.67 R
6606 7121 0.037697 CGGGGATCTGTTTGTCACGA 60.038 55.0 0.00 0.00 0.00 4.35 R
7566 8584 0.381089 GGCTGTGCATTGCTCATCTC 59.619 55.0 13.29 6.55 31.70 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.098501 TGCATCTACTTCGTGATCATGTCT 59.901 41.667 14.52 1.62 0.00 3.41
55 56 1.521450 TTCTTCGTCTTCTCGCCCGT 61.521 55.000 0.00 0.00 0.00 5.28
203 204 0.840722 ACCTGTCTGGAATCCGGGTT 60.841 55.000 0.00 0.00 39.71 4.11
323 343 0.608856 ATGCCTTTGGTCATCGTGCA 60.609 50.000 0.00 0.00 0.00 4.57
368 389 8.880750 GGTAGAGCAAAACGATATTTTAGAACT 58.119 33.333 0.00 0.00 0.00 3.01
435 457 7.391148 AAAATGTATAGTGCCAAATTCTCGT 57.609 32.000 0.00 0.00 0.00 4.18
472 495 7.776107 TGAATCAACATTCCGGCAAAATATTA 58.224 30.769 0.00 0.00 38.14 0.98
495 518 6.683974 AGCAACTATCGCATTTCAAATACT 57.316 33.333 0.00 0.00 0.00 2.12
548 591 5.655532 ACCACAAACATACGTAGATCTAGGT 59.344 40.000 26.36 26.36 37.79 3.08
557 600 9.962783 ACATACGTAGATCTAGGTCATAAAAAC 57.037 33.333 26.80 2.90 35.92 2.43
565 614 8.812972 AGATCTAGGTCATAAAAACTGTGTACA 58.187 33.333 5.64 0.00 0.00 2.90
690 752 0.915364 AAATGAGGTGAGGAGGAGGC 59.085 55.000 0.00 0.00 0.00 4.70
691 753 0.252881 AATGAGGTGAGGAGGAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
692 754 0.252881 ATGAGGTGAGGAGGAGGCAA 60.253 55.000 0.00 0.00 0.00 4.52
693 755 0.252881 TGAGGTGAGGAGGAGGCAAT 60.253 55.000 0.00 0.00 0.00 3.56
694 756 0.467804 GAGGTGAGGAGGAGGCAATC 59.532 60.000 0.00 0.00 0.00 2.67
695 757 0.252881 AGGTGAGGAGGAGGCAATCA 60.253 55.000 0.00 0.00 0.00 2.57
782 847 3.959535 AATATCTAGCTGCTCTCAGGC 57.040 47.619 4.91 0.00 40.65 4.85
802 867 2.252072 TACCAATGGCGCACCTCCTC 62.252 60.000 10.83 0.00 36.63 3.71
809 874 4.803426 CGCACCTCCTCGCACCTC 62.803 72.222 0.00 0.00 0.00 3.85
810 875 4.459089 GCACCTCCTCGCACCTCC 62.459 72.222 0.00 0.00 0.00 4.30
811 876 2.681778 CACCTCCTCGCACCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
812 877 1.379977 CACCTCCTCGCACCTCCTA 60.380 63.158 0.00 0.00 0.00 2.94
813 878 1.076632 ACCTCCTCGCACCTCCTAG 60.077 63.158 0.00 0.00 0.00 3.02
814 879 2.494530 CCTCCTCGCACCTCCTAGC 61.495 68.421 0.00 0.00 0.00 3.42
815 880 1.754621 CTCCTCGCACCTCCTAGCA 60.755 63.158 0.00 0.00 0.00 3.49
816 881 1.304962 TCCTCGCACCTCCTAGCAA 60.305 57.895 0.00 0.00 0.00 3.91
817 882 0.687757 TCCTCGCACCTCCTAGCAAT 60.688 55.000 0.00 0.00 0.00 3.56
818 883 0.531532 CCTCGCACCTCCTAGCAATG 60.532 60.000 0.00 0.00 0.00 2.82
819 884 1.153369 TCGCACCTCCTAGCAATGC 60.153 57.895 0.00 0.00 0.00 3.56
820 885 3.414272 GCACCTCCTAGCAATGCG 58.586 61.111 0.00 0.00 0.00 4.73
821 886 2.828128 GCACCTCCTAGCAATGCGC 61.828 63.158 0.00 0.00 42.91 6.09
886 951 1.296715 GTGTGGTGCACCTCCTAGG 59.703 63.158 34.75 0.82 42.10 3.02
888 953 0.472925 TGTGGTGCACCTCCTAGGAA 60.473 55.000 34.75 12.92 37.67 3.36
889 954 0.912486 GTGGTGCACCTCCTAGGAAT 59.088 55.000 34.75 0.60 37.67 3.01
894 959 1.227674 CACCTCCTAGGAATGCGCC 60.228 63.158 13.77 0.00 37.67 6.53
895 960 1.689233 ACCTCCTAGGAATGCGCCA 60.689 57.895 13.77 0.00 37.67 5.69
896 961 1.227674 CCTCCTAGGAATGCGCCAC 60.228 63.158 13.77 0.00 37.67 5.01
897 962 1.592669 CTCCTAGGAATGCGCCACG 60.593 63.158 13.77 0.00 0.00 4.94
898 963 2.016393 CTCCTAGGAATGCGCCACGA 62.016 60.000 13.77 0.00 0.00 4.35
899 964 1.069765 CCTAGGAATGCGCCACGAT 59.930 57.895 1.05 0.00 0.00 3.73
900 965 1.224069 CCTAGGAATGCGCCACGATG 61.224 60.000 1.05 0.00 0.00 3.84
901 966 0.530650 CTAGGAATGCGCCACGATGT 60.531 55.000 4.18 0.00 0.00 3.06
902 967 0.107897 TAGGAATGCGCCACGATGTT 60.108 50.000 4.18 0.00 0.00 2.71
903 968 0.960364 AGGAATGCGCCACGATGTTT 60.960 50.000 4.18 0.00 0.00 2.83
904 969 0.523335 GGAATGCGCCACGATGTTTC 60.523 55.000 4.18 0.00 0.00 2.78
905 970 0.447801 GAATGCGCCACGATGTTTCT 59.552 50.000 4.18 0.00 0.00 2.52
906 971 0.881118 AATGCGCCACGATGTTTCTT 59.119 45.000 4.18 0.00 0.00 2.52
907 972 0.881118 ATGCGCCACGATGTTTCTTT 59.119 45.000 4.18 0.00 0.00 2.52
908 973 0.040514 TGCGCCACGATGTTTCTTTG 60.041 50.000 4.18 0.00 0.00 2.77
909 974 0.729140 GCGCCACGATGTTTCTTTGG 60.729 55.000 0.00 0.00 0.00 3.28
967 1039 5.723887 TGCAATTTGAAAACCCCCATATACT 59.276 36.000 0.00 0.00 0.00 2.12
971 1043 8.630037 CAATTTGAAAACCCCCATATACTCTAC 58.370 37.037 0.00 0.00 0.00 2.59
972 1044 5.899631 TGAAAACCCCCATATACTCTACC 57.100 43.478 0.00 0.00 0.00 3.18
973 1045 5.290335 TGAAAACCCCCATATACTCTACCA 58.710 41.667 0.00 0.00 0.00 3.25
974 1046 5.914716 TGAAAACCCCCATATACTCTACCAT 59.085 40.000 0.00 0.00 0.00 3.55
975 1047 7.083628 TGAAAACCCCCATATACTCTACCATA 58.916 38.462 0.00 0.00 0.00 2.74
976 1048 7.742213 TGAAAACCCCCATATACTCTACCATAT 59.258 37.037 0.00 0.00 0.00 1.78
977 1049 9.275572 GAAAACCCCCATATACTCTACCATATA 57.724 37.037 0.00 0.00 0.00 0.86
978 1050 8.619683 AAACCCCCATATACTCTACCATATAC 57.380 38.462 0.00 0.00 0.00 1.47
1007 1080 2.727544 CAAGCCACCCAAACACCG 59.272 61.111 0.00 0.00 0.00 4.94
1025 1098 4.077184 AAATCGTGCGGCGGAGGA 62.077 61.111 24.89 24.89 41.72 3.71
1035 1108 4.344865 GCGGAGGAAAGCCCACCA 62.345 66.667 0.00 0.00 44.95 4.17
1215 1311 2.612251 CTCCTCCCCCTCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1424 1532 1.517832 CCCTCATGTCCGGTCAGTC 59.482 63.158 7.60 0.00 0.00 3.51
1433 1541 0.323816 TCCGGTCAGTCAGATCAGCT 60.324 55.000 0.00 0.00 0.00 4.24
1436 1544 0.536260 GGTCAGTCAGATCAGCTGCT 59.464 55.000 9.47 0.00 44.52 4.24
1491 1604 3.976902 GATGCCACGCTTGCTTGCC 62.977 63.158 0.00 0.00 0.00 4.52
1522 1639 1.900585 TTGCTTCGATCTGTGTGCGC 61.901 55.000 0.00 0.00 0.00 6.09
1545 1662 5.477510 CAGCCTTACTCCTGTGATGATATC 58.522 45.833 0.00 0.00 0.00 1.63
1559 1676 1.926510 TGATATCGTTGCTTCGTGCTG 59.073 47.619 0.00 0.00 43.37 4.41
1609 1726 7.438459 CGCTTTAGTAGATATTTAGTGTGCCTT 59.562 37.037 0.00 0.00 0.00 4.35
1684 1835 7.103641 GGATCAGCGGAATTTACCTGATTATA 58.896 38.462 13.45 0.00 43.10 0.98
1686 1837 7.724305 TCAGCGGAATTTACCTGATTATAAC 57.276 36.000 0.00 0.00 30.00 1.89
1690 1841 6.708949 GCGGAATTTACCTGATTATAACTCCA 59.291 38.462 0.00 0.00 0.00 3.86
1700 1851 6.994496 CCTGATTATAACTCCATTCAGCTTGA 59.006 38.462 6.14 0.00 31.45 3.02
1701 1852 7.664731 CCTGATTATAACTCCATTCAGCTTGAT 59.335 37.037 6.14 0.00 31.45 2.57
1702 1853 8.985315 TGATTATAACTCCATTCAGCTTGATT 57.015 30.769 0.00 0.00 0.00 2.57
1734 1885 5.975988 TTATTGCTAGTGGAATTCCTCCT 57.024 39.130 24.73 20.70 45.64 3.69
1739 1890 4.651503 TGCTAGTGGAATTCCTCCTCTTAG 59.348 45.833 24.73 17.62 44.14 2.18
1744 1895 1.763545 GAATTCCTCCTCTTAGGCCGT 59.236 52.381 0.00 0.00 36.51 5.68
1833 2222 4.975502 CGTGCACAATGTGAACTGTATTTT 59.024 37.500 21.03 0.00 39.78 1.82
1843 2232 4.819630 GTGAACTGTATTTTGGACCAGACA 59.180 41.667 0.00 0.00 0.00 3.41
1859 2248 2.693069 AGACAACATCTGCTGCAGTAC 58.307 47.619 27.24 12.51 35.81 2.73
1927 2316 4.406003 TCTGCTATTTTACCTCCTCCAGAC 59.594 45.833 0.00 0.00 0.00 3.51
1966 2355 2.663602 CGAAATATTCGCTGAGATCCGG 59.336 50.000 0.00 0.00 46.97 5.14
1981 2370 0.691078 TCCGGGGGAGAATCAAGGAG 60.691 60.000 0.00 0.00 36.25 3.69
1987 2376 1.137282 GGGAGAATCAAGGAGGACGAC 59.863 57.143 0.00 0.00 36.25 4.34
2002 2391 0.312416 ACGACATAGATGCGCCTCTC 59.688 55.000 18.89 6.04 33.04 3.20
2059 2448 2.528743 CGGCAAGGAGTATGCGCAG 61.529 63.158 18.32 0.00 44.75 5.18
2119 2508 1.884464 CCACGATGAGATGCCCACG 60.884 63.158 0.00 0.00 0.00 4.94
2240 2632 2.022035 ACCCCACATCCTCTTCTCCATA 60.022 50.000 0.00 0.00 0.00 2.74
2253 2645 7.050377 CCTCTTCTCCATATGTGTATGTTTGT 58.950 38.462 1.24 0.00 36.72 2.83
2273 2665 9.667107 TGTTTGTTTGTTAATTTTAATGTCCCA 57.333 25.926 0.00 0.00 0.00 4.37
2291 2683 4.081697 GTCCCATTTTAATGTCCCACTTGG 60.082 45.833 2.13 0.00 34.60 3.61
2325 2724 2.281484 GTCAGTCCCAGCGGCAAA 60.281 61.111 1.45 0.00 0.00 3.68
2511 2910 8.922058 TTCTTCGACCAGATAAAGTATGTTAC 57.078 34.615 0.00 0.00 0.00 2.50
2516 2922 9.399797 TCGACCAGATAAAGTATGTTACTCTTA 57.600 33.333 0.00 0.00 38.26 2.10
2537 2944 9.984190 CTCTTACTCCTACATAAAACTTATCCC 57.016 37.037 0.00 0.00 0.00 3.85
2538 2945 8.931568 TCTTACTCCTACATAAAACTTATCCCC 58.068 37.037 0.00 0.00 0.00 4.81
2539 2946 6.170846 ACTCCTACATAAAACTTATCCCCG 57.829 41.667 0.00 0.00 0.00 5.73
2540 2947 4.964593 TCCTACATAAAACTTATCCCCGC 58.035 43.478 0.00 0.00 0.00 6.13
2549 2956 2.616524 ACTTATCCCCGCCTATGCTAA 58.383 47.619 0.00 0.00 34.43 3.09
2550 2957 2.302157 ACTTATCCCCGCCTATGCTAAC 59.698 50.000 0.00 0.00 34.43 2.34
2553 2960 1.136828 TCCCCGCCTATGCTAACAAT 58.863 50.000 0.00 0.00 34.43 2.71
2554 2961 1.202758 TCCCCGCCTATGCTAACAATG 60.203 52.381 0.00 0.00 34.43 2.82
2580 2987 8.883731 GTGCATACACATACTAGACAAAAGAAT 58.116 33.333 0.00 0.00 46.61 2.40
2581 2988 9.098355 TGCATACACATACTAGACAAAAGAATC 57.902 33.333 0.00 0.00 0.00 2.52
2592 3000 9.288576 ACTAGACAAAAGAATCAACAATGATGA 57.711 29.630 0.00 0.00 45.60 2.92
2613 3025 5.976458 TGATGTGATGTAGTGTGATTGCTA 58.024 37.500 0.00 0.00 0.00 3.49
2619 3031 8.203485 TGTGATGTAGTGTGATTGCTATATTGA 58.797 33.333 0.00 0.00 0.00 2.57
2647 3059 1.785321 GCAATGTTGTGCATGCTGC 59.215 52.632 20.33 14.44 44.29 5.25
2656 3068 0.677731 GTGCATGCTGCTGTTCCCTA 60.678 55.000 20.33 0.00 45.31 3.53
2673 3085 9.408648 CTGTTCCCTACATACCAATTCTTTTAT 57.591 33.333 0.00 0.00 35.85 1.40
2695 3108 4.672899 TGTTATTTTCCTGGAAAGGGGAG 58.327 43.478 20.25 0.00 32.93 4.30
2696 3109 4.107311 TGTTATTTTCCTGGAAAGGGGAGT 59.893 41.667 20.25 7.84 32.93 3.85
2920 3336 7.192852 ACACAAGTTAGGATCTGATCAATCT 57.807 36.000 18.64 9.52 0.00 2.40
2923 3339 7.438757 CACAAGTTAGGATCTGATCAATCTGAG 59.561 40.741 18.64 6.62 38.01 3.35
2980 3396 3.490439 TCACTTGGTCTTCATGCTTCA 57.510 42.857 0.00 0.00 0.00 3.02
3239 3655 5.657474 TGTTACCGCATAGAGAAAGGTAAG 58.343 41.667 5.72 0.00 44.89 2.34
3415 3835 9.640963 CTTGAAGGATATAGAAACGGTAATAGG 57.359 37.037 0.00 0.00 0.00 2.57
3489 3913 7.492994 GGTTTCCATGACTCATCTTAGTTCTAC 59.507 40.741 0.00 0.00 0.00 2.59
3615 4039 7.558161 TCAGATCTTGCTTGTACATAATTGG 57.442 36.000 0.00 0.00 0.00 3.16
3667 4091 7.732025 TGTTCTCACTGGTATCTTGAAACTTA 58.268 34.615 0.00 0.00 0.00 2.24
3713 4137 9.653287 CTCTTTACATGTTGTAGTAATCTTGGA 57.347 33.333 2.30 0.00 33.92 3.53
3728 4152 8.663167 AGTAATCTTGGACATATGGATCATTGA 58.337 33.333 7.80 4.80 0.00 2.57
3785 4209 5.010012 ACATCTGCTTCCTAGGTTTTGTTTG 59.990 40.000 9.08 3.80 0.00 2.93
3790 4214 5.889289 TGCTTCCTAGGTTTTGTTTGTTACT 59.111 36.000 9.08 0.00 0.00 2.24
3803 4227 5.336744 TGTTTGTTACTGTTACAAAGCAGC 58.663 37.500 21.24 12.40 43.78 5.25
3827 4251 4.464951 TCAGAAGCTTGATGCCATGAAAAT 59.535 37.500 2.10 0.00 44.23 1.82
3842 4266 3.909732 TGAAAATGACACTCCAGGGTTT 58.090 40.909 0.00 0.00 0.00 3.27
3857 4281 7.014422 ACTCCAGGGTTTTCTCTAATATACTCG 59.986 40.741 0.00 0.00 0.00 4.18
3871 4295 8.396390 TCTAATATACTCGAAATATCTGCGGTC 58.604 37.037 0.00 0.00 0.00 4.79
3882 4306 2.359850 TGCGGTCAAGGATGGTGC 60.360 61.111 0.00 0.00 0.00 5.01
3951 4375 4.396166 GCTGCACACACCTATCAGTTAAAT 59.604 41.667 0.00 0.00 0.00 1.40
4088 4525 3.988379 TGCAGTGTGAAAATTCAGGAC 57.012 42.857 0.00 0.00 37.98 3.85
4161 4598 2.744202 CCAAAAGCAACTGTCTATCGCT 59.256 45.455 0.00 0.00 33.45 4.93
4218 4655 2.417243 GGAGGACGGGCAATTGATTTTG 60.417 50.000 10.34 0.00 0.00 2.44
4260 4697 1.059098 ACCTGAGCCATCACAGTTCA 58.941 50.000 0.00 0.00 32.93 3.18
4362 4799 5.788531 GTGTCGGTATTGAAGAAAATTGACG 59.211 40.000 0.00 0.00 0.00 4.35
4371 4808 6.371809 TGAAGAAAATTGACGCTGTAAGTT 57.628 33.333 0.00 0.00 35.30 2.66
4372 4809 7.485418 TGAAGAAAATTGACGCTGTAAGTTA 57.515 32.000 0.00 0.00 35.30 2.24
4373 4810 8.094798 TGAAGAAAATTGACGCTGTAAGTTAT 57.905 30.769 0.00 0.00 35.30 1.89
4374 4811 8.227791 TGAAGAAAATTGACGCTGTAAGTTATC 58.772 33.333 0.00 0.00 35.30 1.75
4404 4841 5.309323 TGCACCATTTAGCTTTGATGTAC 57.691 39.130 0.00 0.00 0.00 2.90
4424 4861 6.400568 TGTACCTATGTTTAACACTACCAGC 58.599 40.000 0.00 0.00 0.00 4.85
4458 4897 1.304134 CACACCTGGTTTAGCCCCC 60.304 63.158 0.00 0.00 36.04 5.40
4477 4916 3.805497 CCCCCGCCCCTTCTTACC 61.805 72.222 0.00 0.00 0.00 2.85
4489 4928 2.489073 CCTTCTTACCTGGCAACCAAGT 60.489 50.000 0.00 0.00 32.42 3.16
4495 4934 2.957474 ACCTGGCAACCAAGTACAATT 58.043 42.857 0.00 0.00 30.80 2.32
4502 4941 7.022055 TGGCAACCAAGTACAATTAATATCG 57.978 36.000 0.00 0.00 0.00 2.92
4513 4952 9.621629 AGTACAATTAATATCGGAATTTCCACA 57.378 29.630 15.58 1.58 35.91 4.17
4515 4954 7.425606 ACAATTAATATCGGAATTTCCACAGC 58.574 34.615 15.58 0.00 35.91 4.40
4516 4955 7.068103 ACAATTAATATCGGAATTTCCACAGCA 59.932 33.333 15.58 0.00 35.91 4.41
4566 5010 5.431765 TCTTGCTCTCCTTAATTTGCTAGG 58.568 41.667 0.00 0.00 0.00 3.02
4568 5012 5.950544 TGCTCTCCTTAATTTGCTAGGTA 57.049 39.130 0.00 0.00 0.00 3.08
4578 5022 8.956426 CCTTAATTTGCTAGGTAATTCTGACAA 58.044 33.333 0.00 0.00 0.00 3.18
4594 5038 9.685276 AATTCTGACAATATGGTTCAGTATTCA 57.315 29.630 8.60 0.00 0.00 2.57
4627 5071 6.983474 ACTTTGCACTTGCTTTGTTTTATT 57.017 29.167 2.33 0.00 42.66 1.40
4629 5073 6.593382 ACTTTGCACTTGCTTTGTTTTATTCA 59.407 30.769 2.33 0.00 42.66 2.57
4631 5075 6.586868 TGCACTTGCTTTGTTTTATTCAAG 57.413 33.333 2.33 0.00 42.66 3.02
4632 5076 5.006552 TGCACTTGCTTTGTTTTATTCAAGC 59.993 36.000 2.33 0.00 42.66 4.01
4650 5103 1.277557 AGCCTCTGTCTGATTCCACAC 59.722 52.381 0.00 0.00 0.00 3.82
4661 5114 4.213270 TCTGATTCCACACGTGTCATTTTC 59.787 41.667 20.49 12.50 0.00 2.29
4686 5140 7.120579 TCCTGTACATAAACAACAATGACATCC 59.879 37.037 0.00 0.00 0.00 3.51
4692 5146 9.206870 ACATAAACAACAATGACATCCATTTTC 57.793 29.630 0.00 0.00 42.55 2.29
4806 5274 3.019564 AGCTCCATCTACATTTTGGTGC 58.980 45.455 7.04 7.04 45.70 5.01
4813 5281 3.230134 TCTACATTTTGGTGCCTGCTTT 58.770 40.909 0.00 0.00 0.00 3.51
4817 5285 4.971939 ACATTTTGGTGCCTGCTTTATTT 58.028 34.783 0.00 0.00 0.00 1.40
4827 5295 6.306397 GTGCCTGCTTTATTTTAACAAATGC 58.694 36.000 0.00 0.00 34.29 3.56
4844 5312 7.059448 ACAAATGCGTTAATTTATTTGCCAG 57.941 32.000 15.34 1.17 41.71 4.85
4850 5318 6.364706 TGCGTTAATTTATTTGCCAGTTTCAG 59.635 34.615 0.00 0.00 0.00 3.02
4952 5420 3.334691 TGTAACAGAGAGAAAATGGGCG 58.665 45.455 0.00 0.00 0.00 6.13
4985 5453 2.122768 GGAACTCAGATCCCCATGTCT 58.877 52.381 0.00 0.00 0.00 3.41
5169 5650 0.614415 TTAAGGGGGCACATGCAAGG 60.614 55.000 6.15 0.00 44.36 3.61
5219 5710 6.775142 TGAAAAATAAGGTGACACATCCTTGA 59.225 34.615 8.08 0.00 42.97 3.02
5297 5789 5.699097 TTGTATGTTTGGTAAAGTCTGCC 57.301 39.130 0.00 0.00 0.00 4.85
5414 5907 0.609957 TGCTGCTGCTAACCATGCTT 60.610 50.000 17.00 0.00 40.48 3.91
5472 5965 2.182516 ATCCGACTTTCAGGGGATCT 57.817 50.000 0.00 0.00 34.19 2.75
5475 5968 1.689273 CCGACTTTCAGGGGATCTAGG 59.311 57.143 0.00 0.00 0.00 3.02
5482 5975 4.354208 TTCAGGGGATCTAGGTTCTCTT 57.646 45.455 0.00 0.00 0.00 2.85
5499 5992 1.133606 TCTTTGGTGGACAGGGGTTTC 60.134 52.381 0.00 0.00 0.00 2.78
5500 5993 0.631753 TTTGGTGGACAGGGGTTTCA 59.368 50.000 0.00 0.00 0.00 2.69
5505 5998 4.051478 TGGTGGACAGGGGTTTCATATAT 58.949 43.478 0.00 0.00 0.00 0.86
5544 6037 3.758931 GGTGGTGAAATGGGCCGC 61.759 66.667 0.00 0.00 0.00 6.53
5547 6040 2.274645 TGGTGAAATGGGCCGCAAG 61.275 57.895 0.00 0.00 0.00 4.01
5568 6061 5.957771 AGTGGTATGAAGATGGAAAGCTA 57.042 39.130 0.00 0.00 0.00 3.32
5604 6097 5.518848 ACACTTTCACTGATTTCATTGCA 57.481 34.783 0.00 0.00 0.00 4.08
5724 6217 3.644966 ATGAGGCCCGACTTATTCAAA 57.355 42.857 0.00 0.00 0.00 2.69
5751 6244 3.365265 GCTGGGGTGCCTTTCGTG 61.365 66.667 0.00 0.00 0.00 4.35
5796 6289 2.764572 CCCAACTATCCCGTTGACTACT 59.235 50.000 5.33 0.00 45.40 2.57
5818 6311 5.370880 ACTGCTGAATGGGAGGTATTAATCT 59.629 40.000 0.00 0.00 0.00 2.40
5822 6315 6.439636 TGAATGGGAGGTATTAATCTCCTG 57.560 41.667 18.10 0.00 46.51 3.86
5823 6316 5.911178 TGAATGGGAGGTATTAATCTCCTGT 59.089 40.000 18.10 8.30 46.51 4.00
5842 6336 7.437862 TCTCCTGTGTTGCATTTATTTTGTTTC 59.562 33.333 0.00 0.00 0.00 2.78
5847 6341 7.281774 TGTGTTGCATTTATTTTGTTTCCATGT 59.718 29.630 0.00 0.00 0.00 3.21
5856 6350 9.442047 TTTATTTTGTTTCCATGTTTCACTGTT 57.558 25.926 0.00 0.00 0.00 3.16
5857 6351 6.718454 TTTTGTTTCCATGTTTCACTGTTG 57.282 33.333 0.00 0.00 0.00 3.33
5861 6355 6.734137 TGTTTCCATGTTTCACTGTTGTATC 58.266 36.000 0.00 0.00 0.00 2.24
5862 6356 6.319911 TGTTTCCATGTTTCACTGTTGTATCA 59.680 34.615 0.00 0.00 0.00 2.15
5867 6361 6.072563 CCATGTTTCACTGTTGTATCATCACA 60.073 38.462 0.00 0.00 0.00 3.58
5875 6369 7.331687 TCACTGTTGTATCATCACATTGTACAG 59.668 37.037 8.35 8.35 38.57 2.74
5877 6371 8.311109 ACTGTTGTATCATCACATTGTACAGTA 58.689 33.333 12.24 0.00 41.51 2.74
5891 6385 6.896021 TTGTACAGTAGCTTCAGTTAGACT 57.104 37.500 0.00 0.00 0.00 3.24
5894 6388 8.400184 TGTACAGTAGCTTCAGTTAGACTTAA 57.600 34.615 0.00 0.00 0.00 1.85
5895 6389 8.853126 TGTACAGTAGCTTCAGTTAGACTTAAA 58.147 33.333 0.00 0.00 0.00 1.52
5901 6395 7.851387 AGCTTCAGTTAGACTTAAATTAGCC 57.149 36.000 0.00 0.00 29.23 3.93
5914 6408 3.677156 AATTAGCCTGGCCTTTGATCT 57.323 42.857 16.57 0.00 0.00 2.75
5915 6409 2.425143 TTAGCCTGGCCTTTGATCTG 57.575 50.000 16.57 0.00 0.00 2.90
5919 6413 1.887956 GCCTGGCCTTTGATCTGAACA 60.888 52.381 7.66 0.00 0.00 3.18
5931 6436 1.321474 TCTGAACAAGGCTTGCTTGG 58.679 50.000 26.45 14.39 36.23 3.61
5943 6448 0.403655 TTGCTTGGTGGGCATGTCTA 59.596 50.000 0.00 0.00 39.54 2.59
5948 6453 1.656587 TGGTGGGCATGTCTAAGACT 58.343 50.000 0.00 0.00 33.15 3.24
5949 6454 2.827755 TGGTGGGCATGTCTAAGACTA 58.172 47.619 0.00 0.00 33.15 2.59
5950 6455 2.766263 TGGTGGGCATGTCTAAGACTAG 59.234 50.000 0.00 0.00 33.15 2.57
5951 6456 2.103263 GGTGGGCATGTCTAAGACTAGG 59.897 54.545 0.00 0.00 33.15 3.02
5952 6457 3.031736 GTGGGCATGTCTAAGACTAGGA 58.968 50.000 0.00 0.00 33.15 2.94
5953 6458 3.451178 GTGGGCATGTCTAAGACTAGGAA 59.549 47.826 0.00 0.00 33.15 3.36
5954 6459 4.081087 GTGGGCATGTCTAAGACTAGGAAA 60.081 45.833 0.00 0.00 33.15 3.13
5955 6460 4.721776 TGGGCATGTCTAAGACTAGGAAAT 59.278 41.667 0.00 0.00 33.15 2.17
5956 6461 5.059833 GGGCATGTCTAAGACTAGGAAATG 58.940 45.833 0.00 4.33 33.15 2.32
5957 6462 5.163301 GGGCATGTCTAAGACTAGGAAATGA 60.163 44.000 0.00 0.00 33.15 2.57
5958 6463 6.465035 GGGCATGTCTAAGACTAGGAAATGAT 60.465 42.308 0.00 0.00 33.15 2.45
5959 6464 6.995091 GGCATGTCTAAGACTAGGAAATGATT 59.005 38.462 10.29 0.00 33.15 2.57
5960 6465 7.041508 GGCATGTCTAAGACTAGGAAATGATTG 60.042 40.741 10.29 0.00 33.15 2.67
5961 6466 7.497249 GCATGTCTAAGACTAGGAAATGATTGT 59.503 37.037 10.29 0.00 33.15 2.71
5962 6467 9.039870 CATGTCTAAGACTAGGAAATGATTGTC 57.960 37.037 0.00 0.00 33.15 3.18
5963 6468 7.258441 TGTCTAAGACTAGGAAATGATTGTCG 58.742 38.462 0.00 0.00 33.15 4.35
5964 6469 7.093902 TGTCTAAGACTAGGAAATGATTGTCGT 60.094 37.037 0.00 0.00 33.15 4.34
5965 6470 8.404000 GTCTAAGACTAGGAAATGATTGTCGTA 58.596 37.037 0.00 0.00 0.00 3.43
5966 6471 8.404000 TCTAAGACTAGGAAATGATTGTCGTAC 58.596 37.037 0.00 0.00 0.00 3.67
5967 6472 6.777213 AGACTAGGAAATGATTGTCGTACT 57.223 37.500 0.00 0.00 0.00 2.73
5968 6473 7.876936 AGACTAGGAAATGATTGTCGTACTA 57.123 36.000 0.00 0.00 0.00 1.82
5969 6474 8.466617 AGACTAGGAAATGATTGTCGTACTAT 57.533 34.615 0.00 0.00 0.00 2.12
5970 6475 9.570468 AGACTAGGAAATGATTGTCGTACTATA 57.430 33.333 0.00 0.00 0.00 1.31
5972 6477 9.962783 ACTAGGAAATGATTGTCGTACTATAAC 57.037 33.333 0.00 0.00 0.00 1.89
5973 6478 9.961265 CTAGGAAATGATTGTCGTACTATAACA 57.039 33.333 0.00 0.00 0.00 2.41
6074 6588 8.728088 AATAAATAGGAAGCGAATAATTTGCG 57.272 30.769 0.00 0.00 44.92 4.85
6087 6601 7.290842 CGAATAATTTGCGCTGTATGTAATCT 58.709 34.615 9.73 0.00 0.00 2.40
6096 6610 3.562973 GCTGTATGTAATCTGTGCATGCT 59.437 43.478 20.33 0.00 36.21 3.79
6116 6630 1.378382 ATTGGCCATGCACGTGCTA 60.378 52.632 37.59 25.26 42.66 3.49
6118 6632 1.655885 TTGGCCATGCACGTGCTATG 61.656 55.000 37.59 32.99 42.66 2.23
6132 6646 5.005394 CACGTGCTATGGTCTTGTTATGTAC 59.995 44.000 0.82 0.00 0.00 2.90
6133 6647 5.105473 ACGTGCTATGGTCTTGTTATGTACT 60.105 40.000 0.00 0.00 0.00 2.73
6134 6648 5.459107 CGTGCTATGGTCTTGTTATGTACTC 59.541 44.000 0.00 0.00 0.00 2.59
6135 6649 5.753921 GTGCTATGGTCTTGTTATGTACTCC 59.246 44.000 0.00 0.00 0.00 3.85
6136 6650 5.163343 TGCTATGGTCTTGTTATGTACTCCC 60.163 44.000 0.00 0.00 0.00 4.30
6137 6651 5.070580 GCTATGGTCTTGTTATGTACTCCCT 59.929 44.000 0.00 0.00 0.00 4.20
6138 6652 5.615925 ATGGTCTTGTTATGTACTCCCTC 57.384 43.478 0.00 0.00 0.00 4.30
6139 6653 4.684724 TGGTCTTGTTATGTACTCCCTCT 58.315 43.478 0.00 0.00 0.00 3.69
6140 6654 4.466370 TGGTCTTGTTATGTACTCCCTCTG 59.534 45.833 0.00 0.00 0.00 3.35
6141 6655 4.466726 GGTCTTGTTATGTACTCCCTCTGT 59.533 45.833 0.00 0.00 0.00 3.41
6142 6656 5.655532 GGTCTTGTTATGTACTCCCTCTGTA 59.344 44.000 0.00 0.00 0.00 2.74
6143 6657 6.154021 GGTCTTGTTATGTACTCCCTCTGTAA 59.846 42.308 0.00 0.00 0.00 2.41
6144 6658 7.034397 GTCTTGTTATGTACTCCCTCTGTAAC 58.966 42.308 0.00 0.00 0.00 2.50
6145 6659 6.952358 TCTTGTTATGTACTCCCTCTGTAACT 59.048 38.462 0.00 0.00 0.00 2.24
6146 6660 7.453752 TCTTGTTATGTACTCCCTCTGTAACTT 59.546 37.037 0.00 0.00 0.00 2.66
6147 6661 8.654485 TTGTTATGTACTCCCTCTGTAACTTA 57.346 34.615 0.00 0.00 0.00 2.24
6148 6662 8.654485 TGTTATGTACTCCCTCTGTAACTTAA 57.346 34.615 0.00 0.00 0.00 1.85
6149 6663 8.526147 TGTTATGTACTCCCTCTGTAACTTAAC 58.474 37.037 0.00 0.00 0.00 2.01
6150 6664 8.526147 GTTATGTACTCCCTCTGTAACTTAACA 58.474 37.037 0.00 0.00 0.00 2.41
6151 6665 7.735326 ATGTACTCCCTCTGTAACTTAACAT 57.265 36.000 0.00 0.00 0.00 2.71
6152 6666 8.834004 ATGTACTCCCTCTGTAACTTAACATA 57.166 34.615 0.00 0.00 0.00 2.29
6153 6667 8.654485 TGTACTCCCTCTGTAACTTAACATAA 57.346 34.615 0.00 0.00 0.00 1.90
6154 6668 8.526147 TGTACTCCCTCTGTAACTTAACATAAC 58.474 37.037 0.00 0.00 0.00 1.89
6155 6669 7.793948 ACTCCCTCTGTAACTTAACATAACT 57.206 36.000 0.00 0.00 0.00 2.24
6156 6670 7.838884 ACTCCCTCTGTAACTTAACATAACTC 58.161 38.462 0.00 0.00 0.00 3.01
6157 6671 6.860080 TCCCTCTGTAACTTAACATAACTCG 58.140 40.000 0.00 0.00 0.00 4.18
6158 6672 6.435277 TCCCTCTGTAACTTAACATAACTCGT 59.565 38.462 0.00 0.00 0.00 4.18
6159 6673 7.039504 TCCCTCTGTAACTTAACATAACTCGTT 60.040 37.037 0.00 0.00 0.00 3.85
6160 6674 7.601508 CCCTCTGTAACTTAACATAACTCGTTT 59.398 37.037 0.00 0.00 0.00 3.60
6161 6675 8.985805 CCTCTGTAACTTAACATAACTCGTTTT 58.014 33.333 0.00 0.00 0.00 2.43
6185 6699 4.530094 GACACAACGACAATGTCAAGAA 57.470 40.909 14.24 0.00 41.94 2.52
6186 6700 4.904116 GACACAACGACAATGTCAAGAAA 58.096 39.130 14.24 0.00 41.94 2.52
6187 6701 5.303747 ACACAACGACAATGTCAAGAAAA 57.696 34.783 14.24 0.00 32.09 2.29
6188 6702 5.331902 ACACAACGACAATGTCAAGAAAAG 58.668 37.500 14.24 0.00 32.09 2.27
6189 6703 5.106317 ACACAACGACAATGTCAAGAAAAGT 60.106 36.000 14.24 0.00 32.09 2.66
6190 6704 5.452302 CACAACGACAATGTCAAGAAAAGTC 59.548 40.000 14.24 0.00 32.09 3.01
6191 6705 5.354234 ACAACGACAATGTCAAGAAAAGTCT 59.646 36.000 14.24 0.00 34.72 3.24
6192 6706 6.128007 ACAACGACAATGTCAAGAAAAGTCTT 60.128 34.615 14.24 0.00 45.36 3.01
6207 6721 9.768662 AAGAAAAGTCTTGTATTAAGTTACGGA 57.231 29.630 0.00 0.00 42.73 4.69
6208 6722 9.420551 AGAAAAGTCTTGTATTAAGTTACGGAG 57.579 33.333 0.00 0.00 0.00 4.63
6209 6723 8.543862 AAAAGTCTTGTATTAAGTTACGGAGG 57.456 34.615 0.00 0.00 0.00 4.30
6210 6724 6.218108 AGTCTTGTATTAAGTTACGGAGGG 57.782 41.667 0.00 0.00 0.00 4.30
6211 6725 5.954150 AGTCTTGTATTAAGTTACGGAGGGA 59.046 40.000 0.00 0.00 0.00 4.20
6212 6726 6.096564 AGTCTTGTATTAAGTTACGGAGGGAG 59.903 42.308 0.00 0.00 0.00 4.30
6213 6727 5.954150 TCTTGTATTAAGTTACGGAGGGAGT 59.046 40.000 0.00 0.00 0.00 3.85
6214 6728 7.067494 GTCTTGTATTAAGTTACGGAGGGAGTA 59.933 40.741 0.00 0.00 0.00 2.59
6290 6804 3.885297 CTCTCACCAACACATCCTTTTGT 59.115 43.478 0.00 0.00 0.00 2.83
6297 6811 2.443887 CACATCCTTTTGTGCCCTTG 57.556 50.000 0.00 0.00 40.45 3.61
6298 6812 1.001181 CACATCCTTTTGTGCCCTTGG 59.999 52.381 0.00 0.00 40.45 3.61
6419 6933 0.388520 GTGTTTTCTTGCCCCGCATC 60.389 55.000 0.00 0.00 38.76 3.91
6420 6934 1.154035 GTTTTCTTGCCCCGCATCG 60.154 57.895 0.00 0.00 38.76 3.84
6421 6935 2.988688 TTTTCTTGCCCCGCATCGC 61.989 57.895 0.00 0.00 38.76 4.58
6422 6936 4.713735 TTCTTGCCCCGCATCGCA 62.714 61.111 0.00 0.00 38.76 5.10
6423 6937 3.993614 TTCTTGCCCCGCATCGCAT 62.994 57.895 0.00 0.00 38.76 4.73
6443 6957 1.593750 CTATCGAGGCTGGCTGCAC 60.594 63.158 18.32 10.17 45.15 4.57
6453 6967 2.264813 GCTGGCTGCACAAATGTATTG 58.735 47.619 11.80 0.00 42.31 1.90
6477 6991 4.154296 GATGCCTGTCCATCTGCC 57.846 61.111 0.00 0.00 38.80 4.85
6529 7043 0.880278 TCGTCACTGCTGGCTTGAAC 60.880 55.000 0.00 0.00 0.00 3.18
6606 7121 8.634444 CCAGATTATACTCACAGCTAACTACTT 58.366 37.037 0.00 0.00 0.00 2.24
6623 7138 2.767505 ACTTCGTGACAAACAGATCCC 58.232 47.619 0.00 0.00 0.00 3.85
6680 7567 2.285824 GCTGAGGGAGCTCAAGACT 58.714 57.895 17.19 7.61 45.21 3.24
6683 7570 1.898472 CTGAGGGAGCTCAAGACTGAA 59.102 52.381 17.19 0.00 32.43 3.02
6684 7571 2.301296 CTGAGGGAGCTCAAGACTGAAA 59.699 50.000 17.19 0.00 32.43 2.69
6817 7705 2.675844 TGACGTGGCATGCTGTTATTAC 59.324 45.455 18.92 0.00 0.00 1.89
6856 7754 2.351706 TTTTCCGGCCTAACTGTTGT 57.648 45.000 0.00 0.00 0.00 3.32
6915 7813 2.620115 CGCCTTCACCTATGCATTCATT 59.380 45.455 3.54 0.00 34.22 2.57
6984 7882 0.368907 GTGCGCACATATTCGTCGTT 59.631 50.000 34.52 0.00 0.00 3.85
6988 7886 1.006832 GCACATATTCGTCGTTGCCT 58.993 50.000 0.00 0.00 0.00 4.75
6996 7894 2.736144 TCGTCGTTGCCTTCAGTAAT 57.264 45.000 0.00 0.00 0.00 1.89
7040 7938 3.571401 ACACTTCTTCTGATTTGCCCAAG 59.429 43.478 0.00 0.00 0.00 3.61
7074 7972 6.535963 AGAAAGGAAGCCATTTGAATTAGG 57.464 37.500 0.00 0.00 0.00 2.69
7078 7976 5.826643 AGGAAGCCATTTGAATTAGGTGTA 58.173 37.500 0.00 0.00 0.00 2.90
7079 7977 6.252995 AGGAAGCCATTTGAATTAGGTGTAA 58.747 36.000 0.00 0.00 0.00 2.41
7080 7978 6.378280 AGGAAGCCATTTGAATTAGGTGTAAG 59.622 38.462 0.00 0.00 0.00 2.34
7081 7979 6.405842 GGAAGCCATTTGAATTAGGTGTAAGG 60.406 42.308 0.00 0.00 0.00 2.69
7082 7980 5.826643 AGCCATTTGAATTAGGTGTAAGGA 58.173 37.500 0.00 0.00 0.00 3.36
7083 7981 6.252995 AGCCATTTGAATTAGGTGTAAGGAA 58.747 36.000 0.00 0.00 0.00 3.36
7084 7982 6.378280 AGCCATTTGAATTAGGTGTAAGGAAG 59.622 38.462 0.00 0.00 0.00 3.46
7085 7983 6.564328 CCATTTGAATTAGGTGTAAGGAAGC 58.436 40.000 0.00 0.00 0.00 3.86
7086 7984 6.405842 CCATTTGAATTAGGTGTAAGGAAGCC 60.406 42.308 0.00 0.00 0.00 4.35
7087 7985 4.919774 TGAATTAGGTGTAAGGAAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
7088 7986 5.450818 TGAATTAGGTGTAAGGAAGCCAT 57.549 39.130 0.00 0.00 0.00 4.40
7089 7987 5.826643 TGAATTAGGTGTAAGGAAGCCATT 58.173 37.500 0.00 0.00 0.00 3.16
7090 7988 6.252995 TGAATTAGGTGTAAGGAAGCCATTT 58.747 36.000 0.00 0.00 0.00 2.32
7091 7989 6.152661 TGAATTAGGTGTAAGGAAGCCATTTG 59.847 38.462 0.00 0.00 0.00 2.32
7092 7990 3.806949 AGGTGTAAGGAAGCCATTTGA 57.193 42.857 0.00 0.00 0.00 2.69
7093 7991 4.112634 AGGTGTAAGGAAGCCATTTGAA 57.887 40.909 0.00 0.00 0.00 2.69
7094 7992 4.677182 AGGTGTAAGGAAGCCATTTGAAT 58.323 39.130 0.00 0.00 0.00 2.57
7095 7993 5.086621 AGGTGTAAGGAAGCCATTTGAATT 58.913 37.500 0.00 0.00 0.00 2.17
7096 7994 6.252995 AGGTGTAAGGAAGCCATTTGAATTA 58.747 36.000 0.00 0.00 0.00 1.40
7097 7995 6.378280 AGGTGTAAGGAAGCCATTTGAATTAG 59.622 38.462 0.00 0.00 0.00 1.73
7098 7996 6.405842 GGTGTAAGGAAGCCATTTGAATTAGG 60.406 42.308 0.00 0.00 0.00 2.69
7099 7997 6.152831 GTGTAAGGAAGCCATTTGAATTAGGT 59.847 38.462 0.00 0.00 0.00 3.08
7100 7998 5.665916 AAGGAAGCCATTTGAATTAGGTG 57.334 39.130 0.00 0.00 0.00 4.00
7101 7999 4.677182 AGGAAGCCATTTGAATTAGGTGT 58.323 39.130 0.00 0.00 0.00 4.16
7166 8069 5.105392 TGTTATTTGGCAAGAATGGGATGAC 60.105 40.000 0.00 0.00 0.00 3.06
7167 8070 2.905415 TTGGCAAGAATGGGATGACT 57.095 45.000 0.00 0.00 0.00 3.41
7218 8122 5.363101 GTCTGATGATGATAAGGAAGTGCA 58.637 41.667 0.00 0.00 0.00 4.57
7229 8133 7.596494 TGATAAGGAAGTGCAATCTCTTTTTG 58.404 34.615 7.14 0.00 0.00 2.44
7237 8141 5.126061 AGTGCAATCTCTTTTTGACTTGTGT 59.874 36.000 0.00 0.00 0.00 3.72
7272 8182 4.573900 CTGAAGCACAAGATAGGAAGTGT 58.426 43.478 0.00 0.00 34.59 3.55
7307 8218 4.771577 TGCTATCATGGTTTGGTTTGATGT 59.228 37.500 0.00 0.00 31.59 3.06
7309 8220 6.165577 GCTATCATGGTTTGGTTTGATGTTT 58.834 36.000 0.00 0.00 31.59 2.83
7323 8238 5.371115 TTGATGTTTGGAAATCGAACTCC 57.629 39.130 8.81 8.81 39.83 3.85
7337 8252 8.970859 AAATCGAACTCCTGATTCATTAATCT 57.029 30.769 1.53 0.00 41.83 2.40
7338 8253 7.959689 ATCGAACTCCTGATTCATTAATCTG 57.040 36.000 1.53 1.11 41.83 2.90
7377 8321 8.190784 CCTAGGTTACTCATTAATTGCCTTTTG 58.809 37.037 0.00 0.00 0.00 2.44
7379 8323 7.602753 AGGTTACTCATTAATTGCCTTTTGTC 58.397 34.615 0.00 0.00 0.00 3.18
7386 8330 9.696917 CTCATTAATTGCCTTTTGTCTAAACTT 57.303 29.630 0.00 0.00 0.00 2.66
7404 8348 8.784043 TCTAAACTTTCTTTCTGCCTAATTGAC 58.216 33.333 0.00 0.00 0.00 3.18
7409 8353 0.393808 TTCTGCCTAATTGACGGGCC 60.394 55.000 0.00 0.00 44.71 5.80
7425 8369 1.544724 GGCCTGATTTGCCTTACACA 58.455 50.000 0.00 0.00 45.70 3.72
7429 8400 3.193267 GCCTGATTTGCCTTACACATTGA 59.807 43.478 0.00 0.00 0.00 2.57
7435 8406 6.265196 TGATTTGCCTTACACATTGAAGTCTT 59.735 34.615 0.00 0.00 0.00 3.01
7502 8484 7.574779 GCATTTGGTATACACATTGTCAGACAA 60.575 37.037 18.42 18.42 42.95 3.18
7503 8485 7.433708 TTTGGTATACACATTGTCAGACAAG 57.566 36.000 20.55 14.50 41.94 3.16
7504 8486 5.487433 TGGTATACACATTGTCAGACAAGG 58.513 41.667 23.30 23.30 44.54 3.61
7519 8537 5.059833 CAGACAAGGTAAGTTCTCAAAGCT 58.940 41.667 0.00 0.00 0.00 3.74
7537 8555 3.984018 GCTACAAAATGTTGCATGCTG 57.016 42.857 20.33 9.29 45.86 4.41
7556 8574 4.019411 TGCTGTGAGTTCCAGGAATGAATA 60.019 41.667 4.80 0.00 0.00 1.75
7560 8578 7.252612 TGTGAGTTCCAGGAATGAATAACTA 57.747 36.000 4.80 0.00 0.00 2.24
7579 8597 9.525409 AATAACTAAAAATGAGATGAGCAATGC 57.475 29.630 0.00 0.00 0.00 3.56
7580 8598 6.519679 ACTAAAAATGAGATGAGCAATGCA 57.480 33.333 8.35 0.00 0.00 3.96
7581 8599 6.327934 ACTAAAAATGAGATGAGCAATGCAC 58.672 36.000 8.35 0.73 0.00 4.57
7583 8601 4.371855 AAATGAGATGAGCAATGCACAG 57.628 40.909 11.43 0.00 32.12 3.66
7584 8602 1.092348 TGAGATGAGCAATGCACAGC 58.908 50.000 12.70 12.70 35.94 4.40
7585 8603 0.381089 GAGATGAGCAATGCACAGCC 59.619 55.000 16.51 8.24 36.30 4.85
7586 8604 0.323087 AGATGAGCAATGCACAGCCA 60.323 50.000 16.51 7.10 36.30 4.75
7587 8605 0.744874 GATGAGCAATGCACAGCCAT 59.255 50.000 9.66 10.93 32.12 4.40
7588 8606 1.951602 GATGAGCAATGCACAGCCATA 59.048 47.619 9.66 0.00 32.12 2.74
7589 8607 1.836802 TGAGCAATGCACAGCCATAA 58.163 45.000 8.35 0.00 0.00 1.90
7590 8608 1.473677 TGAGCAATGCACAGCCATAAC 59.526 47.619 8.35 0.00 0.00 1.89
7591 8609 1.473677 GAGCAATGCACAGCCATAACA 59.526 47.619 8.35 0.00 0.00 2.41
7592 8610 2.100252 GAGCAATGCACAGCCATAACAT 59.900 45.455 8.35 0.00 0.00 2.71
7593 8611 2.100252 AGCAATGCACAGCCATAACATC 59.900 45.455 8.35 0.00 0.00 3.06
7594 8612 2.800629 GCAATGCACAGCCATAACATCC 60.801 50.000 0.00 0.00 0.00 3.51
7607 8625 7.823799 CAGCCATAACATCCCAAAATTAAAACT 59.176 33.333 0.00 0.00 0.00 2.66
7624 8642 4.376340 AAACTGACTTGGTGCAAAGAAG 57.624 40.909 5.15 2.50 0.00 2.85
7626 8644 3.620488 ACTGACTTGGTGCAAAGAAGAA 58.380 40.909 5.15 0.00 0.00 2.52
7631 8649 4.218312 ACTTGGTGCAAAGAAGAAGGATT 58.782 39.130 5.15 0.00 0.00 3.01
7632 8650 4.038402 ACTTGGTGCAAAGAAGAAGGATTG 59.962 41.667 5.15 0.00 0.00 2.67
7633 8651 2.297033 TGGTGCAAAGAAGAAGGATTGC 59.703 45.455 2.58 2.58 46.29 3.56
7636 8654 3.648339 GCAAAGAAGAAGGATTGCACA 57.352 42.857 4.60 0.00 45.61 4.57
7637 8655 4.184079 GCAAAGAAGAAGGATTGCACAT 57.816 40.909 4.60 0.00 45.61 3.21
7638 8656 3.924686 GCAAAGAAGAAGGATTGCACATG 59.075 43.478 4.60 0.00 45.61 3.21
7668 8719 5.934625 GCAGGTTGATTTCTTTCACTAGAGA 59.065 40.000 0.00 0.00 0.00 3.10
7669 8720 6.091986 GCAGGTTGATTTCTTTCACTAGAGAG 59.908 42.308 0.00 0.00 0.00 3.20
7671 8722 6.013812 AGGTTGATTTCTTTCACTAGAGAGCT 60.014 38.462 0.00 0.00 0.00 4.09
7672 8723 6.652900 GGTTGATTTCTTTCACTAGAGAGCTT 59.347 38.462 0.00 0.00 0.00 3.74
7673 8724 7.360776 GGTTGATTTCTTTCACTAGAGAGCTTG 60.361 40.741 0.00 0.00 0.00 4.01
7674 8725 6.169094 TGATTTCTTTCACTAGAGAGCTTGG 58.831 40.000 0.00 0.00 0.00 3.61
7676 8727 5.552870 TTCTTTCACTAGAGAGCTTGGTT 57.447 39.130 0.00 0.00 0.00 3.67
7715 8784 8.040716 ACCTTTACAAGTACATAATTGTCAGC 57.959 34.615 7.92 0.00 42.61 4.26
7716 8785 7.883311 ACCTTTACAAGTACATAATTGTCAGCT 59.117 33.333 7.92 0.00 42.61 4.24
7736 8805 8.443937 GTCAGCTAAAACTGTTATACTTTGGAG 58.556 37.037 0.00 0.00 38.84 3.86
7755 8824 1.886542 AGAAATTCGTCCCAAAGCCAC 59.113 47.619 0.00 0.00 0.00 5.01
7815 8888 3.893813 GAGCTCCCAGGAATAAATGCAAT 59.106 43.478 0.87 0.00 0.00 3.56
7864 8938 2.890945 ACAGCCAACAATTAAGGTGGAC 59.109 45.455 4.06 0.00 0.00 4.02
7886 8960 2.999331 TGGTGCAAATAAGGAGGCTAC 58.001 47.619 0.00 0.00 0.00 3.58
7892 8966 0.759346 AATAAGGAGGCTACGCAGGG 59.241 55.000 0.00 0.00 0.00 4.45
7898 8972 1.961180 GAGGCTACGCAGGGTGACAT 61.961 60.000 0.00 0.00 0.00 3.06
7904 8978 3.741344 GCTACGCAGGGTGACATTTATAG 59.259 47.826 0.00 0.00 0.00 1.31
7930 9004 4.761739 CCTTTCATCAGTGAGCTTGGTTAA 59.238 41.667 0.00 0.00 35.39 2.01
7942 9016 3.129287 AGCTTGGTTAAATCCATTCAGCG 59.871 43.478 0.00 0.00 41.20 5.18
7948 9022 5.923684 TGGTTAAATCCATTCAGCGAAAAAC 59.076 36.000 0.00 0.00 31.96 2.43
7991 9065 6.448202 AGGGGCATCTATATATCTGCTAGTT 58.552 40.000 13.40 0.40 35.03 2.24
7995 9069 7.069331 GGGCATCTATATATCTGCTAGTTGAGT 59.931 40.741 13.40 0.00 35.03 3.41
8018 9092 0.895530 TCGCCTCTTGTTACTCCAGG 59.104 55.000 0.00 0.00 0.00 4.45
8019 9093 0.741221 CGCCTCTTGTTACTCCAGGC 60.741 60.000 8.37 8.37 45.39 4.85
8020 9094 0.741221 GCCTCTTGTTACTCCAGGCG 60.741 60.000 3.92 0.00 40.37 5.52
8021 9095 0.895530 CCTCTTGTTACTCCAGGCGA 59.104 55.000 0.00 0.00 0.00 5.54
8022 9096 1.275291 CCTCTTGTTACTCCAGGCGAA 59.725 52.381 0.00 0.00 0.00 4.70
8040 9114 3.495753 GCGAAGAAAAGTCGGAAAGGTAA 59.504 43.478 0.00 0.00 38.93 2.85
8041 9115 4.024641 GCGAAGAAAAGTCGGAAAGGTAAA 60.025 41.667 0.00 0.00 38.93 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.673594 GCGAGAAGACGAAGAATCTCCAA 60.674 47.826 0.00 0.00 35.91 3.53
55 56 0.179111 CAAGACAATAGCGGCGAGGA 60.179 55.000 12.98 0.00 0.00 3.71
323 343 4.457496 CGCAGGCGACCATGGTCT 62.457 66.667 35.84 19.63 42.54 3.85
435 457 6.644592 GGAATGTTGATTCATTTCCGTTTTGA 59.355 34.615 7.42 0.00 39.98 2.69
472 495 6.458751 CCAGTATTTGAAATGCGATAGTTGCT 60.459 38.462 0.00 0.00 39.35 3.91
495 518 2.447443 TGTTTGTGTTTGCAGGTACCA 58.553 42.857 15.94 0.00 0.00 3.25
548 591 6.432783 CCCTCCAATGTACACAGTTTTTATGA 59.567 38.462 0.00 0.00 0.00 2.15
557 600 3.981071 TTCTCCCTCCAATGTACACAG 57.019 47.619 0.00 0.00 0.00 3.66
694 756 3.937706 CACCTCTATCAAGCTTGGTCTTG 59.062 47.826 25.73 12.84 43.53 3.02
695 757 3.054802 CCACCTCTATCAAGCTTGGTCTT 60.055 47.826 25.73 11.19 0.00 3.01
708 773 4.653341 CCACTTCATTCTCTCCACCTCTAT 59.347 45.833 0.00 0.00 0.00 1.98
782 847 1.819632 GGAGGTGCGCCATTGGTAG 60.820 63.158 20.59 0.27 37.19 3.18
802 867 3.414272 GCATTGCTAGGAGGTGCG 58.586 61.111 0.16 0.00 0.00 5.34
804 869 1.434622 CTGCGCATTGCTAGGAGGTG 61.435 60.000 12.24 0.00 46.63 4.00
806 871 1.890979 CCTGCGCATTGCTAGGAGG 60.891 63.158 12.24 14.13 46.63 4.30
807 872 1.144716 TCCTGCGCATTGCTAGGAG 59.855 57.895 20.91 11.29 46.63 3.69
808 873 1.144716 CTCCTGCGCATTGCTAGGA 59.855 57.895 22.41 22.41 46.63 2.94
809 874 1.890979 CCTCCTGCGCATTGCTAGG 60.891 63.158 12.24 17.85 46.63 3.02
810 875 1.153289 ACCTCCTGCGCATTGCTAG 60.153 57.895 12.24 4.03 46.63 3.42
811 876 1.450134 CACCTCCTGCGCATTGCTA 60.450 57.895 12.24 0.00 46.63 3.49
812 877 2.749044 CACCTCCTGCGCATTGCT 60.749 61.111 12.24 0.00 46.63 3.91
813 878 4.487412 GCACCTCCTGCGCATTGC 62.487 66.667 12.24 11.34 46.70 3.56
820 885 3.818787 CAATGGCGCACCTCCTGC 61.819 66.667 10.83 0.00 43.21 4.85
821 886 2.535485 TACCAATGGCGCACCTCCTG 62.535 60.000 10.83 0.00 36.63 3.86
880 945 1.399744 ATCGTGGCGCATTCCTAGGA 61.400 55.000 7.62 7.62 0.00 2.94
882 947 0.530650 ACATCGTGGCGCATTCCTAG 60.531 55.000 10.83 0.00 0.00 3.02
883 948 0.107897 AACATCGTGGCGCATTCCTA 60.108 50.000 10.83 0.00 0.00 2.94
884 949 0.960364 AAACATCGTGGCGCATTCCT 60.960 50.000 10.83 0.00 0.00 3.36
885 950 0.523335 GAAACATCGTGGCGCATTCC 60.523 55.000 10.83 0.00 0.00 3.01
886 951 0.447801 AGAAACATCGTGGCGCATTC 59.552 50.000 10.83 0.00 0.00 2.67
888 953 0.881118 AAAGAAACATCGTGGCGCAT 59.119 45.000 10.83 0.00 0.00 4.73
889 954 0.040514 CAAAGAAACATCGTGGCGCA 60.041 50.000 10.83 0.00 0.00 6.09
967 1039 6.094991 TGGATTGGATTGGGTATATGGTAGA 58.905 40.000 0.00 0.00 0.00 2.59
971 1043 4.463891 GCTTGGATTGGATTGGGTATATGG 59.536 45.833 0.00 0.00 0.00 2.74
972 1044 4.463891 GGCTTGGATTGGATTGGGTATATG 59.536 45.833 0.00 0.00 0.00 1.78
973 1045 4.107798 TGGCTTGGATTGGATTGGGTATAT 59.892 41.667 0.00 0.00 0.00 0.86
974 1046 3.465210 TGGCTTGGATTGGATTGGGTATA 59.535 43.478 0.00 0.00 0.00 1.47
975 1047 2.247111 TGGCTTGGATTGGATTGGGTAT 59.753 45.455 0.00 0.00 0.00 2.73
976 1048 1.643286 TGGCTTGGATTGGATTGGGTA 59.357 47.619 0.00 0.00 0.00 3.69
977 1049 0.413037 TGGCTTGGATTGGATTGGGT 59.587 50.000 0.00 0.00 0.00 4.51
978 1050 0.826062 GTGGCTTGGATTGGATTGGG 59.174 55.000 0.00 0.00 0.00 4.12
1025 1098 2.123468 GTGGTGGTGGTGGGCTTT 60.123 61.111 0.00 0.00 0.00 3.51
1032 1105 3.920196 GACGACGGTGGTGGTGGT 61.920 66.667 0.00 0.00 35.05 4.16
1033 1106 3.234630 ATGACGACGGTGGTGGTGG 62.235 63.158 0.00 0.00 35.05 4.61
1034 1107 1.736645 GATGACGACGGTGGTGGTG 60.737 63.158 0.00 0.00 35.05 4.17
1035 1108 1.541310 ATGATGACGACGGTGGTGGT 61.541 55.000 0.00 0.00 37.85 4.16
1044 1117 1.278172 CCGATGGCGATGATGACGAC 61.278 60.000 0.00 0.00 40.82 4.34
1067 1140 5.107065 CGGAGGAGCATCGTTTATTTATTCC 60.107 44.000 0.00 0.00 34.37 3.01
1158 1254 4.488911 AGGAGGCGGCAGGAGGAT 62.489 66.667 13.08 0.00 0.00 3.24
1491 1604 0.384725 CGAAGCAAAACCAGCGAGTG 60.385 55.000 0.00 0.00 37.01 3.51
1522 1639 3.834489 ATCATCACAGGAGTAAGGCTG 57.166 47.619 0.00 0.00 0.00 4.85
1535 1652 3.602491 GCACGAAGCAACGATATCATCAC 60.602 47.826 3.12 0.00 44.79 3.06
1559 1676 0.678950 GCTCACTCAGATCCCCTAGC 59.321 60.000 0.00 0.00 0.00 3.42
1609 1726 5.957771 AGGTAATCAATCTAGGTGAAGCA 57.042 39.130 1.78 0.00 0.00 3.91
1657 1808 1.760613 AGGTAAATTCCGCTGATCCGA 59.239 47.619 0.00 0.00 0.00 4.55
1707 1858 9.301897 GGAGGAATTCCACTAGCAATAATAAAT 57.698 33.333 26.22 0.00 46.01 1.40
1708 1859 8.691661 GGAGGAATTCCACTAGCAATAATAAA 57.308 34.615 26.22 0.00 46.01 1.40
1744 1895 0.673956 TAACATTACAAGCGCCGCCA 60.674 50.000 4.98 0.00 0.00 5.69
1752 1903 6.090898 GCATCGTAGCCCTATAACATTACAAG 59.909 42.308 0.00 0.00 0.00 3.16
1781 1943 1.179174 TCGCCATCGATCCCCACTAG 61.179 60.000 0.00 0.00 40.21 2.57
1816 1978 6.016360 TCTGGTCCAAAATACAGTTCACATTG 60.016 38.462 0.00 0.00 32.92 2.82
1865 2254 3.243367 GCACAGCATGGTAAGTCAACAAA 60.243 43.478 0.00 0.00 43.62 2.83
1867 2256 1.879380 GCACAGCATGGTAAGTCAACA 59.121 47.619 0.00 0.00 43.62 3.33
1868 2257 2.095567 CAGCACAGCATGGTAAGTCAAC 60.096 50.000 0.00 0.00 43.62 3.18
1871 2260 0.449388 GCAGCACAGCATGGTAAGTC 59.551 55.000 0.00 0.00 43.62 3.01
1872 2261 0.250858 TGCAGCACAGCATGGTAAGT 60.251 50.000 0.00 0.00 43.62 2.24
1873 2262 2.558617 TGCAGCACAGCATGGTAAG 58.441 52.632 0.00 0.00 43.62 2.34
1874 2263 4.817634 TGCAGCACAGCATGGTAA 57.182 50.000 0.00 0.00 43.62 2.85
1881 2270 4.687483 AGATAAACAAAAATGCAGCACAGC 59.313 37.500 0.00 0.00 0.00 4.40
1882 2271 6.089016 CAGAGATAAACAAAAATGCAGCACAG 59.911 38.462 0.00 0.00 0.00 3.66
1896 2285 8.090788 AGGAGGTAAAATAGCAGAGATAAACA 57.909 34.615 0.00 0.00 0.00 2.83
1916 2305 0.764890 TGTTTGGTGTCTGGAGGAGG 59.235 55.000 0.00 0.00 0.00 4.30
1917 2306 1.879796 GCTGTTTGGTGTCTGGAGGAG 60.880 57.143 0.00 0.00 0.00 3.69
1927 2316 0.588252 CGTCCTCAAGCTGTTTGGTG 59.412 55.000 4.39 0.00 37.39 4.17
1966 2355 0.466124 CGTCCTCCTTGATTCTCCCC 59.534 60.000 0.00 0.00 0.00 4.81
1981 2370 0.664767 GAGGCGCATCTATGTCGTCC 60.665 60.000 16.00 8.71 34.27 4.79
1987 2376 1.735920 GCGGAGAGGCGCATCTATG 60.736 63.158 26.31 20.37 0.00 2.23
2223 2612 5.287674 ACACATATGGAGAAGAGGATGTG 57.712 43.478 7.80 10.43 46.09 3.21
2224 2613 6.556495 ACATACACATATGGAGAAGAGGATGT 59.444 38.462 7.80 0.88 42.32 3.06
2225 2614 7.002250 ACATACACATATGGAGAAGAGGATG 57.998 40.000 7.80 3.21 42.32 3.51
2226 2615 7.623999 AACATACACATATGGAGAAGAGGAT 57.376 36.000 7.80 0.00 42.32 3.24
2262 2654 7.456269 AGTGGGACATTAAAATGGGACATTAAA 59.544 33.333 7.56 0.00 43.94 1.52
2263 2655 6.957020 AGTGGGACATTAAAATGGGACATTAA 59.043 34.615 7.56 0.00 43.94 1.40
2264 2656 6.498538 AGTGGGACATTAAAATGGGACATTA 58.501 36.000 7.56 0.00 43.94 1.90
2265 2657 5.341169 AGTGGGACATTAAAATGGGACATT 58.659 37.500 7.56 0.00 43.94 2.71
2266 2658 4.946646 AGTGGGACATTAAAATGGGACAT 58.053 39.130 7.56 0.00 43.94 3.06
2267 2659 4.396357 AGTGGGACATTAAAATGGGACA 57.604 40.909 7.56 0.70 44.52 4.02
2268 2660 4.081697 CCAAGTGGGACATTAAAATGGGAC 60.082 45.833 7.56 0.00 44.52 4.46
2269 2661 4.093011 CCAAGTGGGACATTAAAATGGGA 58.907 43.478 7.56 0.00 44.52 4.37
2270 2662 4.093011 TCCAAGTGGGACATTAAAATGGG 58.907 43.478 7.56 0.00 44.52 4.00
2296 2695 1.610624 GGGACTGACCTGAAATGCGAA 60.611 52.381 0.00 0.00 38.98 4.70
2299 2698 1.457346 CTGGGACTGACCTGAAATGC 58.543 55.000 0.00 0.00 38.98 3.56
2334 2733 1.281867 CCCTTGGTGTCCTCTGCATAA 59.718 52.381 0.00 0.00 0.00 1.90
2511 2910 9.984190 GGGATAAGTTTTATGTAGGAGTAAGAG 57.016 37.037 0.00 0.00 0.00 2.85
2516 2922 5.454329 GCGGGGATAAGTTTTATGTAGGAGT 60.454 44.000 0.00 0.00 0.00 3.85
2526 2932 2.583143 GCATAGGCGGGGATAAGTTTT 58.417 47.619 0.00 0.00 0.00 2.43
2527 2933 2.271944 GCATAGGCGGGGATAAGTTT 57.728 50.000 0.00 0.00 0.00 2.66
2537 2944 4.853720 ATGCACATTGTTAGCATAGGCGG 61.854 47.826 11.66 0.00 46.27 6.13
2538 2945 2.291465 ATGCACATTGTTAGCATAGGCG 59.709 45.455 11.66 0.00 46.27 5.52
2539 2946 3.996150 ATGCACATTGTTAGCATAGGC 57.004 42.857 11.66 0.00 46.27 3.93
2554 2961 7.827819 TCTTTTGTCTAGTATGTGTATGCAC 57.172 36.000 7.03 7.03 45.44 4.57
2566 2973 9.288576 TCATCATTGTTGATTCTTTTGTCTAGT 57.711 29.630 0.00 0.00 40.70 2.57
2580 2987 6.880529 ACACTACATCACATCATCATTGTTGA 59.119 34.615 0.11 0.11 36.00 3.18
2581 2988 6.964934 CACACTACATCACATCATCATTGTTG 59.035 38.462 0.00 0.00 0.00 3.33
2584 2992 6.913873 TCACACTACATCACATCATCATTG 57.086 37.500 0.00 0.00 0.00 2.82
2592 3000 8.996271 CAATATAGCAATCACACTACATCACAT 58.004 33.333 0.00 0.00 0.00 3.21
2647 3059 7.703058 AAAAGAATTGGTATGTAGGGAACAG 57.297 36.000 0.00 0.00 42.70 3.16
2673 3085 4.107311 ACTCCCCTTTCCAGGAAAATAACA 59.893 41.667 15.79 0.00 44.19 2.41
2695 3108 6.371548 TGCACATGAGGAATTCAAGTAACTAC 59.628 38.462 7.93 0.00 39.77 2.73
2696 3109 6.371548 GTGCACATGAGGAATTCAAGTAACTA 59.628 38.462 13.17 0.00 39.77 2.24
2796 3210 8.118607 CACAGACACACACATTTATGATGATAC 58.881 37.037 0.00 0.00 0.00 2.24
2800 3214 6.081693 CACACAGACACACACATTTATGATG 58.918 40.000 0.00 0.00 0.00 3.07
2805 3219 3.274288 TGCACACAGACACACACATTTA 58.726 40.909 0.00 0.00 0.00 1.40
2806 3220 2.090760 TGCACACAGACACACACATTT 58.909 42.857 0.00 0.00 0.00 2.32
2980 3396 9.260002 CCAACAAATAAATACTGTTTGCTTTCT 57.740 29.630 0.00 0.00 36.55 2.52
3043 3459 3.209410 CTTGCTCTGATTGGGTATGTCC 58.791 50.000 0.00 0.00 0.00 4.02
3218 3634 6.534475 TTCTTACCTTTCTCTATGCGGTAA 57.466 37.500 0.00 0.00 37.75 2.85
3272 3688 1.116308 TCAACCACAAGACTGACCGA 58.884 50.000 0.00 0.00 0.00 4.69
3383 3803 6.924060 CCGTTTCTATATCCTTCAAGTAGGTG 59.076 42.308 0.00 0.00 36.63 4.00
3415 3835 6.696148 CCAAGCTCAGAAATATCATGCTTTTC 59.304 38.462 0.00 6.70 36.33 2.29
3463 3883 6.410540 AGAACTAAGATGAGTCATGGAAACC 58.589 40.000 11.20 0.00 0.00 3.27
3472 3892 8.088981 TGAAGGTTTGTAGAACTAAGATGAGTC 58.911 37.037 0.00 0.00 0.00 3.36
3483 3907 6.348621 TGTTTACGTGAAGGTTTGTAGAAC 57.651 37.500 0.00 0.00 0.00 3.01
3568 3992 7.414436 TGAAAAACAAAGTACAATCTTCTCCG 58.586 34.615 0.00 0.00 0.00 4.63
3686 4110 9.436957 CCAAGATTACTACAACATGTAAAGAGT 57.563 33.333 0.00 3.37 31.67 3.24
3785 4209 4.750098 TCTGAGCTGCTTTGTAACAGTAAC 59.250 41.667 2.53 0.00 36.26 2.50
3790 4214 2.549754 GCTTCTGAGCTGCTTTGTAACA 59.450 45.455 2.53 0.00 45.65 2.41
3803 4227 2.640184 TCATGGCATCAAGCTTCTGAG 58.360 47.619 9.26 0.00 44.79 3.35
3827 4251 2.408565 AGAGAAAACCCTGGAGTGTCA 58.591 47.619 0.00 0.00 0.00 3.58
3842 4266 9.989869 CGCAGATATTTCGAGTATATTAGAGAA 57.010 33.333 4.29 0.00 0.00 2.87
3857 4281 3.499918 CCATCCTTGACCGCAGATATTTC 59.500 47.826 0.00 0.00 0.00 2.17
3871 4295 7.397476 TCCTAGTATAATCTAGCACCATCCTTG 59.603 40.741 0.00 0.00 36.89 3.61
3928 4352 1.813513 AACTGATAGGTGTGTGCAGC 58.186 50.000 0.00 0.00 42.96 5.25
3951 4375 9.907576 CAGTTAATTAAATTTGCAACGAACAAA 57.092 25.926 0.00 0.00 40.98 2.83
3973 4397 5.858381 TGATAAGAAGAGCAAGTCACAGTT 58.142 37.500 0.00 0.00 0.00 3.16
4088 4525 4.058124 TGTGATTCTCAAAGAGTTGGACG 58.942 43.478 0.00 0.00 35.29 4.79
4218 4655 2.292569 CCACTGCATATGCTGGATCAAC 59.707 50.000 30.60 2.42 43.15 3.18
4362 4799 5.463724 GTGCAGGTGATAGATAACTTACAGC 59.536 44.000 0.00 0.00 0.00 4.40
4371 4808 5.307976 AGCTAAATGGTGCAGGTGATAGATA 59.692 40.000 0.00 0.00 0.00 1.98
4372 4809 4.103785 AGCTAAATGGTGCAGGTGATAGAT 59.896 41.667 0.00 0.00 0.00 1.98
4373 4810 3.455910 AGCTAAATGGTGCAGGTGATAGA 59.544 43.478 0.00 0.00 0.00 1.98
4374 4811 3.813443 AGCTAAATGGTGCAGGTGATAG 58.187 45.455 0.00 0.00 0.00 2.08
4404 4841 3.308866 GCGCTGGTAGTGTTAAACATAGG 59.691 47.826 0.00 0.00 0.00 2.57
4424 4861 1.199097 GTGTGGTTTGTTCCCATAGCG 59.801 52.381 0.00 0.00 33.76 4.26
4460 4899 3.805497 GGTAAGAAGGGGCGGGGG 61.805 72.222 0.00 0.00 0.00 5.40
4461 4900 2.691252 AGGTAAGAAGGGGCGGGG 60.691 66.667 0.00 0.00 0.00 5.73
4462 4901 2.590092 CAGGTAAGAAGGGGCGGG 59.410 66.667 0.00 0.00 0.00 6.13
4463 4902 2.590092 CCAGGTAAGAAGGGGCGG 59.410 66.667 0.00 0.00 0.00 6.13
4464 4903 2.124695 GCCAGGTAAGAAGGGGCG 60.125 66.667 0.00 0.00 34.56 6.13
4465 4904 0.965866 GTTGCCAGGTAAGAAGGGGC 60.966 60.000 0.00 0.00 44.82 5.80
4477 4916 7.132213 CGATATTAATTGTACTTGGTTGCCAG 58.868 38.462 0.00 0.00 33.81 4.85
4489 4928 8.564574 GCTGTGGAAATTCCGATATTAATTGTA 58.435 33.333 7.60 0.00 40.17 2.41
4495 4934 5.063204 CCTGCTGTGGAAATTCCGATATTA 58.937 41.667 7.60 0.00 40.17 0.98
4512 4951 7.769220 AGAAGTAATCAAATGATTTCCTGCTG 58.231 34.615 13.40 0.00 41.64 4.41
4513 4952 7.951347 AGAAGTAATCAAATGATTTCCTGCT 57.049 32.000 13.40 10.74 41.64 4.24
4515 4954 9.918630 AACAAGAAGTAATCAAATGATTTCCTG 57.081 29.630 13.40 8.18 41.64 3.86
4547 4991 7.717436 AGAATTACCTAGCAAATTAAGGAGAGC 59.283 37.037 0.00 0.00 34.34 4.09
4568 5012 9.685276 TGAATACTGAACCATATTGTCAGAATT 57.315 29.630 12.04 0.00 33.15 2.17
4578 5022 9.739276 TTCTTCTGTTTGAATACTGAACCATAT 57.261 29.630 0.00 0.00 33.94 1.78
4593 5037 4.032104 GCAAGTGCAAAGTTCTTCTGTTTG 59.968 41.667 0.00 0.00 41.59 2.93
4594 5038 4.082026 AGCAAGTGCAAAGTTCTTCTGTTT 60.082 37.500 6.00 0.00 45.16 2.83
4627 5071 2.027745 GTGGAATCAGACAGAGGCTTGA 60.028 50.000 0.00 0.00 0.00 3.02
4629 5073 1.980765 TGTGGAATCAGACAGAGGCTT 59.019 47.619 0.00 0.00 0.00 4.35
4631 5075 1.731720 GTGTGGAATCAGACAGAGGC 58.268 55.000 0.00 0.00 37.16 4.70
4632 5076 1.273606 ACGTGTGGAATCAGACAGAGG 59.726 52.381 0.00 0.00 37.04 3.69
4650 5103 6.893759 TGTTTATGTACAGGAAAATGACACG 58.106 36.000 0.33 0.00 0.00 4.49
4661 5114 7.094420 TGGATGTCATTGTTGTTTATGTACAGG 60.094 37.037 0.33 0.00 0.00 4.00
4686 5140 9.578439 GATTATTTCACCTTCCTTCTGAAAATG 57.422 33.333 0.00 0.00 37.43 2.32
4692 5146 9.618890 TCTTATGATTATTTCACCTTCCTTCTG 57.381 33.333 0.00 0.00 37.11 3.02
4750 5204 4.020307 TGCACAAGAGGACATCATGAACTA 60.020 41.667 0.00 0.00 31.02 2.24
4752 5206 3.076621 TGCACAAGAGGACATCATGAAC 58.923 45.455 0.00 0.00 31.02 3.18
4754 5208 2.303890 ACTGCACAAGAGGACATCATGA 59.696 45.455 0.00 0.00 31.02 3.07
4755 5209 2.708051 ACTGCACAAGAGGACATCATG 58.292 47.619 0.00 0.00 32.78 3.07
4756 5210 4.558226 TTACTGCACAAGAGGACATCAT 57.442 40.909 0.00 0.00 0.00 2.45
4757 5211 4.350368 TTTACTGCACAAGAGGACATCA 57.650 40.909 0.00 0.00 0.00 3.07
4758 5212 5.227238 CATTTACTGCACAAGAGGACATC 57.773 43.478 0.00 0.00 0.00 3.06
4787 5249 3.379372 CAGGCACCAAAATGTAGATGGAG 59.621 47.826 0.00 0.00 37.66 3.86
4806 5274 6.704512 ACGCATTTGTTAAAATAAAGCAGG 57.295 33.333 0.00 0.00 34.14 4.85
4817 5285 8.988934 TGGCAAATAAATTAACGCATTTGTTAA 58.011 25.926 14.25 2.01 45.43 2.01
4827 5295 7.867445 ACTGAAACTGGCAAATAAATTAACG 57.133 32.000 0.00 0.00 0.00 3.18
4839 5307 5.036117 AGTTCTTTCTACTGAAACTGGCA 57.964 39.130 0.00 0.00 37.27 4.92
4840 5308 5.301555 AGAGTTCTTTCTACTGAAACTGGC 58.698 41.667 0.00 0.00 37.27 4.85
4850 5318 9.771534 ATATGGCTTCATAAGAGTTCTTTCTAC 57.228 33.333 0.00 0.00 36.98 2.59
4870 5338 7.781548 AATCAAAAGCTCAAATCAATATGGC 57.218 32.000 0.00 0.00 0.00 4.40
4952 5420 1.339438 TGAGTTCCATCAGAAGCAGCC 60.339 52.381 0.00 0.00 34.29 4.85
5190 5671 8.739972 AGGATGTGTCACCTTATTTTTCAATAC 58.260 33.333 0.00 0.00 31.95 1.89
5191 5672 8.877864 AGGATGTGTCACCTTATTTTTCAATA 57.122 30.769 0.00 0.00 31.95 1.90
5192 5673 7.781324 AGGATGTGTCACCTTATTTTTCAAT 57.219 32.000 0.00 0.00 31.95 2.57
5193 5674 7.286546 TCAAGGATGTGTCACCTTATTTTTCAA 59.713 33.333 0.00 0.00 43.54 2.69
5194 5675 6.775142 TCAAGGATGTGTCACCTTATTTTTCA 59.225 34.615 0.00 0.00 43.54 2.69
5195 5676 7.214467 TCAAGGATGTGTCACCTTATTTTTC 57.786 36.000 0.00 0.00 43.54 2.29
5196 5677 7.595819 TTCAAGGATGTGTCACCTTATTTTT 57.404 32.000 0.00 0.00 43.54 1.94
5197 5678 7.595819 TTTCAAGGATGTGTCACCTTATTTT 57.404 32.000 0.00 0.00 43.54 1.82
5198 5679 7.505585 TCTTTTCAAGGATGTGTCACCTTATTT 59.494 33.333 0.00 0.00 43.54 1.40
5199 5680 7.004086 TCTTTTCAAGGATGTGTCACCTTATT 58.996 34.615 0.00 0.00 43.54 1.40
5200 5681 6.542821 TCTTTTCAAGGATGTGTCACCTTAT 58.457 36.000 0.00 0.00 43.54 1.73
5203 5694 4.141390 ACTCTTTTCAAGGATGTGTCACCT 60.141 41.667 0.00 0.00 38.23 4.00
5219 5710 5.514500 TGTCCCTATTTAGGCACTCTTTT 57.486 39.130 0.00 0.00 42.26 2.27
5240 5731 8.037758 ACCAGTACTATCAGAGAGACAATTTTG 58.962 37.037 0.00 0.00 0.00 2.44
5241 5732 8.140112 ACCAGTACTATCAGAGAGACAATTTT 57.860 34.615 0.00 0.00 0.00 1.82
5242 5733 7.726033 ACCAGTACTATCAGAGAGACAATTT 57.274 36.000 0.00 0.00 0.00 1.82
5243 5734 7.726033 AACCAGTACTATCAGAGAGACAATT 57.274 36.000 0.00 0.00 0.00 2.32
5244 5735 7.415765 CGAAACCAGTACTATCAGAGAGACAAT 60.416 40.741 0.00 0.00 0.00 2.71
5247 5738 5.220892 CCGAAACCAGTACTATCAGAGAGAC 60.221 48.000 0.00 0.00 0.00 3.36
5248 5739 4.882427 CCGAAACCAGTACTATCAGAGAGA 59.118 45.833 0.00 0.00 0.00 3.10
5297 5789 6.750039 AGGAAACATGTTTTTACAGTTGTTCG 59.250 34.615 24.02 0.00 32.11 3.95
5333 5825 7.512992 AGTCTCAGCTATATGGCAGTTTTTAT 58.487 34.615 14.03 0.00 34.17 1.40
5340 5832 5.911378 TGATAGTCTCAGCTATATGGCAG 57.089 43.478 14.03 5.41 32.32 4.85
5350 5843 5.447010 GCTGAAATGTGTTGATAGTCTCAGC 60.447 44.000 4.66 4.66 44.36 4.26
5472 5965 2.637872 CCTGTCCACCAAAGAGAACCTA 59.362 50.000 0.00 0.00 0.00 3.08
5475 5968 1.545651 CCCCTGTCCACCAAAGAGAAC 60.546 57.143 0.00 0.00 0.00 3.01
5482 5975 0.856982 ATGAAACCCCTGTCCACCAA 59.143 50.000 0.00 0.00 0.00 3.67
5499 5992 7.811713 CCACGGATATGAGCTATCACATATATG 59.188 40.741 11.29 11.29 39.03 1.78
5500 5993 7.725844 TCCACGGATATGAGCTATCACATATAT 59.274 37.037 5.80 0.00 39.03 0.86
5505 5998 3.496331 TCCACGGATATGAGCTATCACA 58.504 45.455 0.00 0.00 38.57 3.58
5544 6037 4.946157 AGCTTTCCATCTTCATACCACTTG 59.054 41.667 0.00 0.00 0.00 3.16
5547 6040 6.767902 TCAATAGCTTTCCATCTTCATACCAC 59.232 38.462 0.00 0.00 0.00 4.16
5568 6061 8.522830 TCAGTGAAAGTGTTTTTCTTCTTCAAT 58.477 29.630 0.00 0.00 38.75 2.57
5751 6244 4.937620 TCAAGCATAGTTGTGAGAACATCC 59.062 41.667 0.00 0.00 0.00 3.51
5796 6289 5.221925 GGAGATTAATACCTCCCATTCAGCA 60.222 44.000 10.76 0.00 42.35 4.41
5818 6311 6.481644 GGAAACAAAATAAATGCAACACAGGA 59.518 34.615 0.00 0.00 0.00 3.86
5842 6336 6.072563 TGTGATGATACAACAGTGAAACATGG 60.073 38.462 0.00 0.00 41.43 3.66
5847 6341 7.509141 ACAATGTGATGATACAACAGTGAAA 57.491 32.000 9.16 0.00 33.69 2.69
5856 6350 7.112452 AGCTACTGTACAATGTGATGATACA 57.888 36.000 0.00 0.00 34.63 2.29
5857 6351 7.706607 TGAAGCTACTGTACAATGTGATGATAC 59.293 37.037 0.00 0.00 0.00 2.24
5861 6355 5.871524 ACTGAAGCTACTGTACAATGTGATG 59.128 40.000 0.00 0.00 0.00 3.07
5862 6356 6.042638 ACTGAAGCTACTGTACAATGTGAT 57.957 37.500 0.00 0.00 0.00 3.06
5867 6361 7.469537 AGTCTAACTGAAGCTACTGTACAAT 57.530 36.000 0.00 0.00 0.00 2.71
5875 6369 8.819015 GGCTAATTTAAGTCTAACTGAAGCTAC 58.181 37.037 0.00 0.00 0.00 3.58
5877 6371 7.550906 CAGGCTAATTTAAGTCTAACTGAAGCT 59.449 37.037 0.00 0.00 28.00 3.74
5891 6385 5.360714 CAGATCAAAGGCCAGGCTAATTTAA 59.639 40.000 12.43 0.00 0.00 1.52
5894 6388 3.053395 TCAGATCAAAGGCCAGGCTAATT 60.053 43.478 12.43 1.02 0.00 1.40
5895 6389 2.511218 TCAGATCAAAGGCCAGGCTAAT 59.489 45.455 12.43 0.00 0.00 1.73
5901 6395 2.490903 CCTTGTTCAGATCAAAGGCCAG 59.509 50.000 5.01 0.00 0.00 4.85
5919 6413 2.919328 GCCCACCAAGCAAGCCTT 60.919 61.111 0.00 0.00 0.00 4.35
5931 6436 3.031736 TCCTAGTCTTAGACATGCCCAC 58.968 50.000 15.23 0.00 34.60 4.61
5943 6448 7.171630 AGTACGACAATCATTTCCTAGTCTT 57.828 36.000 0.00 0.00 0.00 3.01
6063 6577 8.070171 ACAGATTACATACAGCGCAAATTATTC 58.930 33.333 11.47 0.00 0.00 1.75
6074 6588 3.562973 AGCATGCACAGATTACATACAGC 59.437 43.478 21.98 0.00 0.00 4.40
6079 6593 4.037565 CCAATGAGCATGCACAGATTACAT 59.962 41.667 22.16 9.92 0.00 2.29
6087 6601 0.973496 ATGGCCAATGAGCATGCACA 60.973 50.000 20.21 20.21 0.00 4.57
6096 6610 2.992273 GCACGTGCATGGCCAATGA 61.992 57.895 34.52 0.00 38.72 2.57
6116 6630 5.129485 CAGAGGGAGTACATAACAAGACCAT 59.871 44.000 0.00 0.00 0.00 3.55
6118 6632 4.466726 ACAGAGGGAGTACATAACAAGACC 59.533 45.833 0.00 0.00 0.00 3.85
6132 6646 6.973474 CGAGTTATGTTAAGTTACAGAGGGAG 59.027 42.308 0.00 0.00 0.00 4.30
6133 6647 6.435277 ACGAGTTATGTTAAGTTACAGAGGGA 59.565 38.462 0.00 0.00 0.00 4.20
6134 6648 6.628185 ACGAGTTATGTTAAGTTACAGAGGG 58.372 40.000 0.00 0.00 0.00 4.30
6135 6649 8.530269 AAACGAGTTATGTTAAGTTACAGAGG 57.470 34.615 0.00 0.00 0.00 3.69
6159 6673 5.048153 TGACATTGTCGTTGTGTCAAAAA 57.952 34.783 11.97 0.00 46.45 1.94
6160 6674 4.686839 TGACATTGTCGTTGTGTCAAAA 57.313 36.364 11.97 0.00 46.45 2.44
6164 6678 4.530094 TTCTTGACATTGTCGTTGTGTC 57.470 40.909 11.97 0.00 41.90 3.67
6165 6679 4.955925 TTTCTTGACATTGTCGTTGTGT 57.044 36.364 11.97 0.00 34.95 3.72
6166 6680 5.331902 ACTTTTCTTGACATTGTCGTTGTG 58.668 37.500 11.97 2.36 34.95 3.33
6167 6681 5.354234 AGACTTTTCTTGACATTGTCGTTGT 59.646 36.000 11.97 4.25 34.95 3.32
6168 6682 5.810525 AGACTTTTCTTGACATTGTCGTTG 58.189 37.500 11.97 5.02 34.95 4.10
6169 6683 6.436843 AAGACTTTTCTTGACATTGTCGTT 57.563 33.333 11.97 0.00 40.82 3.85
6181 6695 9.768662 TCCGTAACTTAATACAAGACTTTTCTT 57.231 29.630 0.00 0.00 43.35 2.52
6182 6696 9.420551 CTCCGTAACTTAATACAAGACTTTTCT 57.579 33.333 0.00 0.00 0.00 2.52
6183 6697 8.654215 CCTCCGTAACTTAATACAAGACTTTTC 58.346 37.037 0.00 0.00 0.00 2.29
6184 6698 7.605309 CCCTCCGTAACTTAATACAAGACTTTT 59.395 37.037 0.00 0.00 0.00 2.27
6185 6699 7.038799 TCCCTCCGTAACTTAATACAAGACTTT 60.039 37.037 0.00 0.00 0.00 2.66
6186 6700 6.438425 TCCCTCCGTAACTTAATACAAGACTT 59.562 38.462 0.00 0.00 0.00 3.01
6187 6701 5.954150 TCCCTCCGTAACTTAATACAAGACT 59.046 40.000 0.00 0.00 0.00 3.24
6188 6702 6.127507 ACTCCCTCCGTAACTTAATACAAGAC 60.128 42.308 0.00 0.00 0.00 3.01
6189 6703 5.954150 ACTCCCTCCGTAACTTAATACAAGA 59.046 40.000 0.00 0.00 0.00 3.02
6190 6704 6.218108 ACTCCCTCCGTAACTTAATACAAG 57.782 41.667 0.00 0.00 0.00 3.16
6191 6705 7.902920 ATACTCCCTCCGTAACTTAATACAA 57.097 36.000 0.00 0.00 0.00 2.41
6192 6706 7.902920 AATACTCCCTCCGTAACTTAATACA 57.097 36.000 0.00 0.00 0.00 2.29
6195 6709 9.993454 GAATAAATACTCCCTCCGTAACTTAAT 57.007 33.333 0.00 0.00 0.00 1.40
6196 6710 9.205513 AGAATAAATACTCCCTCCGTAACTTAA 57.794 33.333 0.00 0.00 0.00 1.85
6197 6711 8.773033 AGAATAAATACTCCCTCCGTAACTTA 57.227 34.615 0.00 0.00 0.00 2.24
6198 6712 7.672122 AGAATAAATACTCCCTCCGTAACTT 57.328 36.000 0.00 0.00 0.00 2.66
6199 6713 7.450944 CCTAGAATAAATACTCCCTCCGTAACT 59.549 40.741 0.00 0.00 0.00 2.24
6200 6714 7.232330 ACCTAGAATAAATACTCCCTCCGTAAC 59.768 40.741 0.00 0.00 0.00 2.50
6201 6715 7.300658 ACCTAGAATAAATACTCCCTCCGTAA 58.699 38.462 0.00 0.00 0.00 3.18
6202 6716 6.856757 ACCTAGAATAAATACTCCCTCCGTA 58.143 40.000 0.00 0.00 0.00 4.02
6203 6717 5.713807 ACCTAGAATAAATACTCCCTCCGT 58.286 41.667 0.00 0.00 0.00 4.69
6204 6718 7.614583 TGATACCTAGAATAAATACTCCCTCCG 59.385 40.741 0.00 0.00 0.00 4.63
6205 6719 8.896722 TGATACCTAGAATAAATACTCCCTCC 57.103 38.462 0.00 0.00 0.00 4.30
6207 6721 9.900112 AGTTGATACCTAGAATAAATACTCCCT 57.100 33.333 0.00 0.00 0.00 4.20
6259 6773 2.289002 GTGTTGGTGAGAGCAGAAACAG 59.711 50.000 0.00 0.00 33.58 3.16
6290 6804 1.455849 CACTCCTGAACCAAGGGCA 59.544 57.895 0.00 0.00 37.96 5.36
6291 6805 1.303643 CCACTCCTGAACCAAGGGC 60.304 63.158 0.00 0.00 37.96 5.19
6294 6808 0.250901 CACCCCACTCCTGAACCAAG 60.251 60.000 0.00 0.00 0.00 3.61
6296 6810 0.475632 ATCACCCCACTCCTGAACCA 60.476 55.000 0.00 0.00 0.00 3.67
6297 6811 0.253327 GATCACCCCACTCCTGAACC 59.747 60.000 0.00 0.00 0.00 3.62
6298 6812 0.253327 GGATCACCCCACTCCTGAAC 59.747 60.000 0.00 0.00 0.00 3.18
6419 6933 2.025969 CCAGCCTCGATAGCATGCG 61.026 63.158 13.01 0.00 0.00 4.73
6420 6934 2.323580 GCCAGCCTCGATAGCATGC 61.324 63.158 10.51 10.51 0.00 4.06
6421 6935 0.949588 CAGCCAGCCTCGATAGCATG 60.950 60.000 9.92 0.00 0.00 4.06
6422 6936 1.370437 CAGCCAGCCTCGATAGCAT 59.630 57.895 9.92 0.00 0.00 3.79
6423 6937 2.817424 CAGCCAGCCTCGATAGCA 59.183 61.111 9.92 0.00 0.00 3.49
6443 6957 4.885907 AGGCATCTCAGGTCAATACATTTG 59.114 41.667 0.00 0.00 0.00 2.32
6453 6967 0.835941 ATGGACAGGCATCTCAGGTC 59.164 55.000 0.00 0.00 0.00 3.85
6477 6991 1.873591 AGTCTTGTGCTTTTACCTGCG 59.126 47.619 0.00 0.00 0.00 5.18
6529 7043 0.474184 AGAATCCAAGGGCCATACCG 59.526 55.000 6.18 0.00 40.62 4.02
6606 7121 0.037697 CGGGGATCTGTTTGTCACGA 60.038 55.000 0.00 0.00 0.00 4.35
6680 7567 2.435372 ACAGCAGGAGGTTGTTTTCA 57.565 45.000 0.00 0.00 37.74 2.69
6817 7705 3.541996 AAACAACTTCCCTTTTGGCAG 57.458 42.857 0.00 0.00 38.58 4.85
6856 7754 6.692486 TCTCAAACCTGCAAGTTAAAACAAA 58.308 32.000 0.06 0.00 0.00 2.83
6906 7804 0.452987 GCGCCTTGAGAATGAATGCA 59.547 50.000 0.00 0.00 0.00 3.96
6915 7813 3.720601 ATGCCCAGCGCCTTGAGA 61.721 61.111 2.29 0.00 36.24 3.27
6984 7882 3.084536 TCCATGCAATTACTGAAGGCA 57.915 42.857 0.00 0.00 39.03 4.75
7040 7938 3.082548 GCTTCCTTTCTTACCCACCTTC 58.917 50.000 0.00 0.00 0.00 3.46
7074 7972 6.152831 ACCTAATTCAAATGGCTTCCTTACAC 59.847 38.462 0.00 0.00 0.00 2.90
7078 7976 5.047092 CACACCTAATTCAAATGGCTTCCTT 60.047 40.000 0.00 0.00 0.00 3.36
7079 7977 4.463891 CACACCTAATTCAAATGGCTTCCT 59.536 41.667 0.00 0.00 0.00 3.36
7080 7978 4.381932 CCACACCTAATTCAAATGGCTTCC 60.382 45.833 0.00 0.00 0.00 3.46
7081 7979 4.747810 CCACACCTAATTCAAATGGCTTC 58.252 43.478 0.00 0.00 0.00 3.86
7082 7980 3.055891 GCCACACCTAATTCAAATGGCTT 60.056 43.478 5.11 0.00 46.13 4.35
7083 7981 2.497273 GCCACACCTAATTCAAATGGCT 59.503 45.455 5.11 0.00 46.13 4.75
7084 7982 2.892374 GCCACACCTAATTCAAATGGC 58.108 47.619 0.00 0.00 43.89 4.40
7085 7983 3.525268 GGCCACACCTAATTCAAATGG 57.475 47.619 0.00 0.00 34.51 3.16
7097 7995 3.249189 TCCCTCACAGGCCACACC 61.249 66.667 5.01 0.00 32.73 4.16
7098 7996 2.348998 CTCCCTCACAGGCCACAC 59.651 66.667 5.01 0.00 32.73 3.82
7099 7997 2.122413 ACTCCCTCACAGGCCACA 60.122 61.111 5.01 0.00 32.73 4.17
7100 7998 2.348998 CACTCCCTCACAGGCCAC 59.651 66.667 5.01 0.00 32.73 5.01
7101 7999 2.930019 CCACTCCCTCACAGGCCA 60.930 66.667 5.01 0.00 32.73 5.36
7166 8069 3.066900 ACGATACCGAAACAGAGGATCAG 59.933 47.826 0.00 0.00 37.00 2.90
7167 8070 3.021695 ACGATACCGAAACAGAGGATCA 58.978 45.455 0.00 0.00 37.00 2.92
7174 8077 2.158841 CCAAACCACGATACCGAAACAG 59.841 50.000 0.00 0.00 39.50 3.16
7218 8122 8.398665 GTCTAACACACAAGTCAAAAAGAGATT 58.601 33.333 0.00 0.00 0.00 2.40
7229 8133 2.034001 GCACACGTCTAACACACAAGTC 60.034 50.000 0.00 0.00 0.00 3.01
7237 8141 1.497991 GCTTCAGCACACGTCTAACA 58.502 50.000 0.00 0.00 41.59 2.41
7272 8182 7.716799 AACCATGATAGCAAAACAAGGATTA 57.283 32.000 0.00 0.00 0.00 1.75
7307 8218 5.312895 TGAATCAGGAGTTCGATTTCCAAA 58.687 37.500 15.65 5.78 35.88 3.28
7309 8220 4.551702 TGAATCAGGAGTTCGATTTCCA 57.448 40.909 15.65 0.00 35.88 3.53
7323 8238 8.030744 CACTAGATGCCAGATTAATGAATCAG 57.969 38.462 5.56 0.00 43.51 2.90
7360 8275 9.696917 AAGTTTAGACAAAAGGCAATTAATGAG 57.303 29.630 0.00 0.00 0.00 2.90
7377 8321 8.784043 TCAATTAGGCAGAAAGAAAGTTTAGAC 58.216 33.333 0.00 0.00 0.00 2.59
7379 8323 7.746475 CGTCAATTAGGCAGAAAGAAAGTTTAG 59.254 37.037 0.00 0.00 0.00 1.85
7386 8330 3.343617 CCCGTCAATTAGGCAGAAAGAA 58.656 45.455 0.00 0.00 0.00 2.52
7409 8353 6.017400 ACTTCAATGTGTAAGGCAAATCAG 57.983 37.500 0.00 0.00 0.00 2.90
7419 8363 7.012327 CCTTCAGTTCAAGACTTCAATGTGTAA 59.988 37.037 0.00 0.00 36.10 2.41
7423 8367 4.276926 GCCTTCAGTTCAAGACTTCAATGT 59.723 41.667 0.00 0.00 36.10 2.71
7424 8368 4.276678 TGCCTTCAGTTCAAGACTTCAATG 59.723 41.667 0.00 0.00 36.10 2.82
7425 8369 4.276926 GTGCCTTCAGTTCAAGACTTCAAT 59.723 41.667 0.00 0.00 36.10 2.57
7429 8400 3.281727 TGTGCCTTCAGTTCAAGACTT 57.718 42.857 0.00 0.00 36.10 3.01
7435 8406 5.359576 AGTTAATTGTTGTGCCTTCAGTTCA 59.640 36.000 0.00 0.00 0.00 3.18
7479 8453 6.429692 CCTTGTCTGACAATGTGTATACCAAA 59.570 38.462 22.28 0.00 37.48 3.28
7502 8484 7.502561 ACATTTTGTAGCTTTGAGAACTTACCT 59.497 33.333 0.00 0.00 0.00 3.08
7503 8485 7.649057 ACATTTTGTAGCTTTGAGAACTTACC 58.351 34.615 0.00 0.00 0.00 2.85
7504 8486 8.958043 CAACATTTTGTAGCTTTGAGAACTTAC 58.042 33.333 0.00 0.00 0.00 2.34
7505 8487 7.647715 GCAACATTTTGTAGCTTTGAGAACTTA 59.352 33.333 0.00 0.00 34.90 2.24
7506 8488 6.476706 GCAACATTTTGTAGCTTTGAGAACTT 59.523 34.615 0.00 0.00 34.90 2.66
7507 8489 5.979517 GCAACATTTTGTAGCTTTGAGAACT 59.020 36.000 0.00 0.00 34.90 3.01
7508 8490 5.748152 TGCAACATTTTGTAGCTTTGAGAAC 59.252 36.000 0.00 0.00 34.90 3.01
7510 8492 5.512753 TGCAACATTTTGTAGCTTTGAGA 57.487 34.783 0.00 0.00 34.90 3.27
7519 8537 4.037803 ACTCACAGCATGCAACATTTTGTA 59.962 37.500 21.98 2.48 42.53 2.41
7533 8551 1.699083 TCATTCCTGGAACTCACAGCA 59.301 47.619 12.11 0.00 34.65 4.41
7534 8552 2.479566 TCATTCCTGGAACTCACAGC 57.520 50.000 12.11 0.00 34.65 4.40
7537 8555 8.561738 TTTAGTTATTCATTCCTGGAACTCAC 57.438 34.615 12.11 3.43 0.00 3.51
7556 8574 6.810182 GTGCATTGCTCATCTCATTTTTAGTT 59.190 34.615 10.49 0.00 0.00 2.24
7560 8578 5.142061 TGTGCATTGCTCATCTCATTTTT 57.858 34.783 10.49 0.00 0.00 1.94
7566 8584 0.381089 GGCTGTGCATTGCTCATCTC 59.619 55.000 13.29 6.55 31.70 2.75
7579 8597 4.741321 ATTTTGGGATGTTATGGCTGTG 57.259 40.909 0.00 0.00 0.00 3.66
7580 8598 6.865834 TTAATTTTGGGATGTTATGGCTGT 57.134 33.333 0.00 0.00 0.00 4.40
7581 8599 7.823799 AGTTTTAATTTTGGGATGTTATGGCTG 59.176 33.333 0.00 0.00 0.00 4.85
7583 8601 7.821846 TCAGTTTTAATTTTGGGATGTTATGGC 59.178 33.333 0.00 0.00 0.00 4.40
7584 8602 9.150348 GTCAGTTTTAATTTTGGGATGTTATGG 57.850 33.333 0.00 0.00 0.00 2.74
7585 8603 9.927668 AGTCAGTTTTAATTTTGGGATGTTATG 57.072 29.630 0.00 0.00 0.00 1.90
7587 8605 9.757227 CAAGTCAGTTTTAATTTTGGGATGTTA 57.243 29.630 0.00 0.00 0.00 2.41
7588 8606 7.714813 CCAAGTCAGTTTTAATTTTGGGATGTT 59.285 33.333 0.00 0.00 32.09 2.71
7589 8607 7.147567 ACCAAGTCAGTTTTAATTTTGGGATGT 60.148 33.333 5.47 0.00 38.27 3.06
7590 8608 7.171337 CACCAAGTCAGTTTTAATTTTGGGATG 59.829 37.037 5.47 0.00 38.27 3.51
7591 8609 7.216494 CACCAAGTCAGTTTTAATTTTGGGAT 58.784 34.615 5.47 0.00 38.27 3.85
7592 8610 6.578023 CACCAAGTCAGTTTTAATTTTGGGA 58.422 36.000 5.47 0.00 38.27 4.37
7593 8611 5.236263 GCACCAAGTCAGTTTTAATTTTGGG 59.764 40.000 5.47 0.00 38.27 4.12
7594 8612 5.814705 TGCACCAAGTCAGTTTTAATTTTGG 59.185 36.000 0.00 0.00 39.49 3.28
7607 8625 2.951642 CCTTCTTCTTTGCACCAAGTCA 59.048 45.455 0.00 0.00 0.00 3.41
7624 8642 3.639538 GCATCATCATGTGCAATCCTTC 58.360 45.455 7.18 0.00 40.94 3.46
7632 8650 1.746787 TCAACCTGCATCATCATGTGC 59.253 47.619 5.53 5.53 41.61 4.57
7633 8651 4.649088 AATCAACCTGCATCATCATGTG 57.351 40.909 0.00 0.00 31.86 3.21
7636 8654 6.153851 TGAAAGAAATCAACCTGCATCATCAT 59.846 34.615 0.00 0.00 0.00 2.45
7637 8655 5.477637 TGAAAGAAATCAACCTGCATCATCA 59.522 36.000 0.00 0.00 0.00 3.07
7638 8656 5.803967 GTGAAAGAAATCAACCTGCATCATC 59.196 40.000 0.00 0.00 0.00 2.92
7736 8805 1.611491 TGTGGCTTTGGGACGAATTTC 59.389 47.619 0.00 0.00 0.00 2.17
7755 8824 2.092968 ACTGGTGTACATACCCATGCTG 60.093 50.000 0.00 0.00 40.09 4.41
7815 8888 4.515191 GGTGTCTGTTGCTCACTTCAATTA 59.485 41.667 0.00 0.00 33.30 1.40
7864 8938 2.450476 AGCCTCCTTATTTGCACCAAG 58.550 47.619 0.00 0.00 0.00 3.61
7886 8960 3.560068 GGAACTATAAATGTCACCCTGCG 59.440 47.826 0.00 0.00 0.00 5.18
7892 8966 9.167311 ACTGATGAAAGGAACTATAAATGTCAC 57.833 33.333 0.00 0.00 38.49 3.67
7898 8972 7.624549 AGCTCACTGATGAAAGGAACTATAAA 58.375 34.615 0.00 0.00 38.49 1.40
7904 8978 3.190118 CCAAGCTCACTGATGAAAGGAAC 59.810 47.826 0.00 0.00 33.30 3.62
7930 9004 6.048509 AGTTTTGTTTTTCGCTGAATGGATT 58.951 32.000 0.00 0.00 0.00 3.01
7942 9016 9.753669 CTTATGTTGGTCAAAGTTTTGTTTTTC 57.246 29.630 4.67 0.00 39.18 2.29
7948 9022 5.296748 CCCCTTATGTTGGTCAAAGTTTTG 58.703 41.667 0.00 0.00 39.48 2.44
7991 9065 2.910688 AACAAGAGGCGAAGAACTCA 57.089 45.000 0.00 0.00 35.90 3.41
7995 9069 2.631062 TGGAGTAACAAGAGGCGAAGAA 59.369 45.455 0.00 0.00 0.00 2.52
8018 9092 1.871676 ACCTTTCCGACTTTTCTTCGC 59.128 47.619 0.00 0.00 35.06 4.70
8019 9093 5.662211 TTTACCTTTCCGACTTTTCTTCG 57.338 39.130 0.00 0.00 36.20 3.79
8020 9094 5.913514 GCTTTTACCTTTCCGACTTTTCTTC 59.086 40.000 0.00 0.00 0.00 2.87
8021 9095 5.358725 TGCTTTTACCTTTCCGACTTTTCTT 59.641 36.000 0.00 0.00 0.00 2.52
8022 9096 4.885325 TGCTTTTACCTTTCCGACTTTTCT 59.115 37.500 0.00 0.00 0.00 2.52
8040 9114 5.358922 TGCTGCTCTTGTAAATTTTGCTTT 58.641 33.333 0.00 0.00 0.00 3.51
8041 9115 4.947645 TGCTGCTCTTGTAAATTTTGCTT 58.052 34.783 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.