Multiple sequence alignment - TraesCS7B01G500200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G500200 chr7B 100.000 5028 0 0 1 5028 750073169 750068142 0.000000e+00 9286.0
1 TraesCS7B01G500200 chr7B 98.684 988 11 2 1 988 718887885 718888870 0.000000e+00 1751.0
2 TraesCS7B01G500200 chr7B 85.155 869 78 19 1188 2038 693050072 693049237 0.000000e+00 843.0
3 TraesCS7B01G500200 chr7B 89.655 609 55 4 3030 3631 750040578 750039971 0.000000e+00 769.0
4 TraesCS7B01G500200 chr7B 86.124 418 51 4 2356 2768 750041323 750040908 1.280000e-120 444.0
5 TraesCS7B01G500200 chr7B 90.909 198 16 2 2799 2994 750040928 750040731 1.070000e-66 265.0
6 TraesCS7B01G500200 chr7B 86.250 160 18 3 3301 3459 720219782 720219626 2.410000e-38 171.0
7 TraesCS7B01G500200 chr7D 89.663 1867 148 26 2230 4076 633599611 633597770 0.000000e+00 2337.0
8 TraesCS7B01G500200 chr7D 82.933 375 22 16 1087 1450 633600013 633599670 2.940000e-77 300.0
9 TraesCS7B01G500200 chr7D 79.530 298 51 8 4733 5024 633597260 633596967 2.370000e-48 204.0
10 TraesCS7B01G500200 chr5A 99.187 984 8 0 1 984 618276480 618275497 0.000000e+00 1773.0
11 TraesCS7B01G500200 chr6A 98.984 984 10 0 1 984 101910005 101910988 0.000000e+00 1762.0
12 TraesCS7B01G500200 chr3B 98.780 984 12 0 1 984 452748804 452747821 0.000000e+00 1751.0
13 TraesCS7B01G500200 chr3B 97.967 984 19 1 1 984 605674452 605675434 0.000000e+00 1705.0
14 TraesCS7B01G500200 chr2B 98.684 988 11 2 1 988 531102471 531101486 0.000000e+00 1751.0
15 TraesCS7B01G500200 chr7A 98.483 989 14 1 1 989 37855372 37854385 0.000000e+00 1742.0
16 TraesCS7B01G500200 chr7A 92.308 1209 84 5 2871 4077 733339126 733340327 0.000000e+00 1709.0
17 TraesCS7B01G500200 chr7A 93.263 475 31 1 2357 2831 733338532 733339005 0.000000e+00 699.0
18 TraesCS7B01G500200 chr7A 80.532 827 98 43 2992 3792 733361040 733361829 1.210000e-160 577.0
19 TraesCS7B01G500200 chr7A 89.112 349 19 11 1126 1471 733337833 733338165 2.800000e-112 416.0
20 TraesCS7B01G500200 chr7A 82.506 423 48 15 2357 2771 733360456 733360860 1.040000e-91 348.0
21 TraesCS7B01G500200 chr7A 85.612 278 23 5 2100 2367 733338203 733338473 4.960000e-70 276.0
22 TraesCS7B01G500200 chr7A 90.244 123 12 0 4903 5025 733340407 733340529 1.450000e-35 161.0
23 TraesCS7B01G500200 chr1B 98.387 992 13 3 1 992 648665996 648665008 0.000000e+00 1740.0
24 TraesCS7B01G500200 chr4A 98.069 984 19 0 1 984 135352580 135353563 0.000000e+00 1712.0
25 TraesCS7B01G500200 chr3A 87.867 511 46 8 1539 2038 497176227 497176732 2.020000e-163 586.0
26 TraesCS7B01G500200 chr3A 88.000 350 31 7 1188 1530 497175809 497176154 2.180000e-108 403.0
27 TraesCS7B01G500200 chr3A 96.970 33 0 1 1565 1597 497176149 497176180 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G500200 chr7B 750068142 750073169 5027 True 9286.000000 9286 100.000000 1 5028 1 chr7B.!!$R3 5027
1 TraesCS7B01G500200 chr7B 718887885 718888870 985 False 1751.000000 1751 98.684000 1 988 1 chr7B.!!$F1 987
2 TraesCS7B01G500200 chr7B 693049237 693050072 835 True 843.000000 843 85.155000 1188 2038 1 chr7B.!!$R1 850
3 TraesCS7B01G500200 chr7B 750039971 750041323 1352 True 492.666667 769 88.896000 2356 3631 3 chr7B.!!$R4 1275
4 TraesCS7B01G500200 chr7D 633596967 633600013 3046 True 947.000000 2337 84.042000 1087 5024 3 chr7D.!!$R1 3937
5 TraesCS7B01G500200 chr5A 618275497 618276480 983 True 1773.000000 1773 99.187000 1 984 1 chr5A.!!$R1 983
6 TraesCS7B01G500200 chr6A 101910005 101910988 983 False 1762.000000 1762 98.984000 1 984 1 chr6A.!!$F1 983
7 TraesCS7B01G500200 chr3B 452747821 452748804 983 True 1751.000000 1751 98.780000 1 984 1 chr3B.!!$R1 983
8 TraesCS7B01G500200 chr3B 605674452 605675434 982 False 1705.000000 1705 97.967000 1 984 1 chr3B.!!$F1 983
9 TraesCS7B01G500200 chr2B 531101486 531102471 985 True 1751.000000 1751 98.684000 1 988 1 chr2B.!!$R1 987
10 TraesCS7B01G500200 chr7A 37854385 37855372 987 True 1742.000000 1742 98.483000 1 989 1 chr7A.!!$R1 988
11 TraesCS7B01G500200 chr7A 733337833 733340529 2696 False 652.200000 1709 90.107800 1126 5025 5 chr7A.!!$F1 3899
12 TraesCS7B01G500200 chr7A 733360456 733361829 1373 False 462.500000 577 81.519000 2357 3792 2 chr7A.!!$F2 1435
13 TraesCS7B01G500200 chr1B 648665008 648665996 988 True 1740.000000 1740 98.387000 1 992 1 chr1B.!!$R1 991
14 TraesCS7B01G500200 chr4A 135352580 135353563 983 False 1712.000000 1712 98.069000 1 984 1 chr4A.!!$F1 983
15 TraesCS7B01G500200 chr3A 497175809 497176732 923 False 347.900000 586 90.945667 1188 2038 3 chr3A.!!$F1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 2.880443 ACAAGCAATCCATCCACTGTT 58.120 42.857 0.00 0.00 0.00 3.16 F
1584 1671 0.237235 TGGAGCTTTTGTTTAGCGCG 59.763 50.000 0.00 0.00 43.37 6.86 F
1709 1807 0.790814 GAGAACCCGAAAGCTGAACG 59.209 55.000 0.00 0.00 0.00 3.95 F
3147 3533 1.044790 TCCTCATGATGAGCGGCTCA 61.045 55.000 32.47 32.47 42.98 4.26 F
3613 4003 1.001974 GAGTGACATGGTACTGGTGCA 59.998 52.381 8.61 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1746 0.457509 CTGTAGCGCAGGTGAGTGAG 60.458 60.0 11.47 0.0 41.42 3.51 R
3328 3718 1.243902 TTGGAGCGATGTTCCCAAAC 58.756 50.0 0.00 0.0 35.91 2.93 R
3600 3990 0.840288 TGGACCTGCACCAGTACCAT 60.840 55.0 0.00 0.0 32.94 3.55 R
3957 4369 0.178981 ACACATGCCCAGTCAAAGCT 60.179 50.0 0.00 0.0 0.00 3.74 R
4804 5233 0.610232 GAGCATCCCAACAAGCCTGT 60.610 55.0 0.00 0.0 37.39 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 8.321650 TCAAAAATAAATTGCAAATCCTCACC 57.678 30.769 1.71 0.00 0.00 4.02
317 318 2.880443 ACAAGCAATCCATCCACTGTT 58.120 42.857 0.00 0.00 0.00 3.16
927 929 4.137543 GGCTGATTGATCCGGTTTTAGAT 58.862 43.478 0.00 0.00 0.00 1.98
990 992 7.141100 GGAAAACGATACTTTCCTTCATTGA 57.859 36.000 7.02 0.00 45.66 2.57
991 993 7.590279 GGAAAACGATACTTTCCTTCATTGAA 58.410 34.615 7.02 0.00 45.66 2.69
992 994 8.244113 GGAAAACGATACTTTCCTTCATTGAAT 58.756 33.333 0.00 0.00 45.66 2.57
993 995 8.970691 AAAACGATACTTTCCTTCATTGAATG 57.029 30.769 0.00 0.00 0.00 2.67
994 996 7.687941 AACGATACTTTCCTTCATTGAATGT 57.312 32.000 4.93 0.00 35.22 2.71
995 997 7.308782 ACGATACTTTCCTTCATTGAATGTC 57.691 36.000 4.93 0.00 33.65 3.06
996 998 6.316390 ACGATACTTTCCTTCATTGAATGTCC 59.684 38.462 4.93 0.00 33.65 4.02
997 999 6.510157 CGATACTTTCCTTCATTGAATGTCCG 60.510 42.308 4.93 0.00 33.65 4.79
998 1000 3.758554 ACTTTCCTTCATTGAATGTCCGG 59.241 43.478 4.93 0.00 0.00 5.14
999 1001 2.418368 TCCTTCATTGAATGTCCGGG 57.582 50.000 0.00 4.09 0.00 5.73
1000 1002 1.633432 TCCTTCATTGAATGTCCGGGT 59.367 47.619 0.00 0.00 0.00 5.28
1001 1003 2.017049 CCTTCATTGAATGTCCGGGTC 58.983 52.381 0.00 0.00 0.00 4.46
1002 1004 1.665679 CTTCATTGAATGTCCGGGTCG 59.334 52.381 0.00 0.00 0.00 4.79
1021 1023 3.365265 CGCTGAGGCCCAACCAAC 61.365 66.667 0.00 0.00 43.14 3.77
1022 1024 3.365265 GCTGAGGCCCAACCAACG 61.365 66.667 0.00 0.00 43.14 4.10
1023 1025 3.365265 CTGAGGCCCAACCAACGC 61.365 66.667 0.00 0.00 43.14 4.84
1031 1033 4.605967 CAACCAACGCGCACGCTT 62.606 61.111 13.70 0.00 45.53 4.68
1032 1034 4.307908 AACCAACGCGCACGCTTC 62.308 61.111 13.70 0.00 45.53 3.86
1034 1036 4.012895 CCAACGCGCACGCTTCTT 62.013 61.111 13.70 0.00 45.53 2.52
1035 1037 2.497628 CAACGCGCACGCTTCTTC 60.498 61.111 13.70 0.00 45.53 2.87
1036 1038 3.712881 AACGCGCACGCTTCTTCC 61.713 61.111 13.70 0.00 45.53 3.46
1037 1039 4.664677 ACGCGCACGCTTCTTCCT 62.665 61.111 13.70 0.00 45.53 3.36
1038 1040 3.843240 CGCGCACGCTTCTTCCTC 61.843 66.667 13.70 0.00 39.32 3.71
1039 1041 3.491652 GCGCACGCTTCTTCCTCC 61.492 66.667 7.96 0.00 38.26 4.30
1040 1042 2.262915 CGCACGCTTCTTCCTCCT 59.737 61.111 0.00 0.00 0.00 3.69
1041 1043 1.807573 CGCACGCTTCTTCCTCCTC 60.808 63.158 0.00 0.00 0.00 3.71
1042 1044 1.448717 GCACGCTTCTTCCTCCTCC 60.449 63.158 0.00 0.00 0.00 4.30
1043 1045 1.219393 CACGCTTCTTCCTCCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
1044 1046 1.079438 ACGCTTCTTCCTCCTCCCT 59.921 57.895 0.00 0.00 0.00 4.20
1045 1047 0.973496 ACGCTTCTTCCTCCTCCCTC 60.973 60.000 0.00 0.00 0.00 4.30
1046 1048 1.681486 CGCTTCTTCCTCCTCCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
1047 1049 1.341913 GCTTCTTCCTCCTCCCTCCC 61.342 65.000 0.00 0.00 0.00 4.30
1048 1050 1.001760 TTCTTCCTCCTCCCTCCCG 59.998 63.158 0.00 0.00 0.00 5.14
1049 1051 1.515754 TTCTTCCTCCTCCCTCCCGA 61.516 60.000 0.00 0.00 0.00 5.14
1050 1052 1.001760 CTTCCTCCTCCCTCCCGAA 59.998 63.158 0.00 0.00 0.00 4.30
1051 1053 1.001760 TTCCTCCTCCCTCCCGAAG 59.998 63.158 0.00 0.00 0.00 3.79
1052 1054 3.157949 CCTCCTCCCTCCCGAAGC 61.158 72.222 0.00 0.00 0.00 3.86
1053 1055 3.532155 CTCCTCCCTCCCGAAGCG 61.532 72.222 0.00 0.00 0.00 4.68
1054 1056 4.056584 TCCTCCCTCCCGAAGCGA 62.057 66.667 0.00 0.00 0.00 4.93
1055 1057 3.075005 CCTCCCTCCCGAAGCGAA 61.075 66.667 0.00 0.00 0.00 4.70
1056 1058 2.496817 CTCCCTCCCGAAGCGAAG 59.503 66.667 0.00 0.00 0.00 3.79
1070 1072 1.340465 CGAAGCGAATCGAACCACG 59.660 57.895 6.91 0.35 45.48 4.94
1073 1075 3.475774 GCGAATCGAACCACGCGT 61.476 61.111 5.58 5.58 41.49 6.01
1074 1076 3.007070 GCGAATCGAACCACGCGTT 62.007 57.895 10.22 0.00 41.49 4.84
1075 1077 1.225368 CGAATCGAACCACGCGTTG 60.225 57.895 10.22 9.54 42.26 4.10
1076 1078 1.509162 GAATCGAACCACGCGTTGC 60.509 57.895 10.22 0.00 42.26 4.17
1102 1104 0.460722 GTCGAGAGGAAACCCTAGCC 59.539 60.000 0.00 0.00 33.25 3.93
1103 1105 0.686769 TCGAGAGGAAACCCTAGCCC 60.687 60.000 0.00 0.00 33.25 5.19
1294 1306 1.218316 GCAGTACGTTCTCCCCCTG 59.782 63.158 0.00 0.00 0.00 4.45
1313 1332 2.040359 CCTCCCCTCCCTTCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
1346 1365 1.877165 GCCGTAAGTAGCTGCGACC 60.877 63.158 9.33 0.00 0.00 4.79
1371 1390 2.837291 CCTCTCGGCCTGCTAGCT 60.837 66.667 17.23 0.00 0.00 3.32
1389 1408 1.478105 GCTTATTTTGCTCCAGTGGGG 59.522 52.381 9.92 7.11 38.37 4.96
1393 1412 2.655077 TTTTGCTCCAGTGGGGGTGG 62.655 60.000 12.10 0.00 36.82 4.61
1440 1459 4.748892 TGTTTGTATGTGTTGGTTGGTTG 58.251 39.130 0.00 0.00 0.00 3.77
1445 1464 4.520874 TGTATGTGTTGGTTGGTTGGTATG 59.479 41.667 0.00 0.00 0.00 2.39
1451 1470 1.506262 GTTGGTTGGTATGCGCTGG 59.494 57.895 9.73 0.00 0.00 4.85
1453 1472 2.045340 GGTTGGTATGCGCTGGGT 60.045 61.111 9.73 0.00 0.00 4.51
1464 1483 2.359169 CGCTGGGTAGGGAGAAGCA 61.359 63.158 0.00 0.00 39.07 3.91
1471 1494 1.471676 GGTAGGGAGAAGCACATCGTG 60.472 57.143 0.00 0.00 36.51 4.35
1477 1500 1.594862 GAGAAGCACATCGTGGCATAC 59.405 52.381 0.00 0.00 33.64 2.39
1479 1502 0.748005 AAGCACATCGTGGCATACCC 60.748 55.000 0.00 0.00 33.64 3.69
1494 1517 3.007614 GCATACCCGGGAATGTACACTAT 59.992 47.826 32.02 8.20 0.00 2.12
1501 1524 3.064931 GGGAATGTACACTATAAGCGCC 58.935 50.000 2.29 0.00 0.00 6.53
1584 1671 0.237235 TGGAGCTTTTGTTTAGCGCG 59.763 50.000 0.00 0.00 43.37 6.86
1597 1684 2.470196 TAGCGCGTATTGAGTCAGTC 57.530 50.000 8.43 0.00 0.00 3.51
1598 1685 0.811915 AGCGCGTATTGAGTCAGTCT 59.188 50.000 8.43 0.00 0.00 3.24
1599 1686 1.192793 GCGCGTATTGAGTCAGTCTC 58.807 55.000 8.43 0.00 43.03 3.36
1600 1687 1.202200 GCGCGTATTGAGTCAGTCTCT 60.202 52.381 8.43 0.00 43.13 3.10
1604 1691 3.878103 GCGTATTGAGTCAGTCTCTAGGA 59.122 47.826 0.00 0.00 43.13 2.94
1605 1692 4.517453 GCGTATTGAGTCAGTCTCTAGGAT 59.483 45.833 0.00 0.00 43.13 3.24
1606 1693 5.334569 GCGTATTGAGTCAGTCTCTAGGATC 60.335 48.000 0.00 0.00 43.13 3.36
1607 1694 5.180492 CGTATTGAGTCAGTCTCTAGGATCC 59.820 48.000 2.48 2.48 43.13 3.36
1608 1695 3.586470 TGAGTCAGTCTCTAGGATCCC 57.414 52.381 8.55 0.00 43.13 3.85
1609 1696 2.853077 TGAGTCAGTCTCTAGGATCCCA 59.147 50.000 8.55 0.00 43.13 4.37
1612 1710 3.117663 AGTCAGTCTCTAGGATCCCAGAC 60.118 52.174 21.12 21.12 36.32 3.51
1619 1717 0.818445 TAGGATCCCAGACGAGACGC 60.818 60.000 8.55 0.00 0.00 5.19
1626 1724 1.588674 CCAGACGAGACGCTCTCTAT 58.411 55.000 11.50 2.46 41.26 1.98
1648 1746 2.491022 CCGAGATGAGACCGTCCCC 61.491 68.421 0.00 0.00 0.00 4.81
1655 1753 1.304217 GAGACCGTCCCCTCACTCA 60.304 63.158 0.00 0.00 0.00 3.41
1692 1790 5.010213 GGTCTGGGATTACTTACTAGCAGAG 59.990 48.000 0.00 0.00 0.00 3.35
1703 1801 1.066787 ACTAGCAGAGAACCCGAAAGC 60.067 52.381 0.00 0.00 0.00 3.51
1709 1807 0.790814 GAGAACCCGAAAGCTGAACG 59.209 55.000 0.00 0.00 0.00 3.95
1717 1815 2.337583 CGAAAGCTGAACGAAGATGGA 58.662 47.619 0.00 0.00 0.00 3.41
1718 1816 2.092838 CGAAAGCTGAACGAAGATGGAC 59.907 50.000 0.00 0.00 0.00 4.02
1730 1828 4.466370 ACGAAGATGGACCAGAGTTTATGA 59.534 41.667 0.00 0.00 0.00 2.15
1731 1829 4.806247 CGAAGATGGACCAGAGTTTATGAC 59.194 45.833 0.00 0.00 0.00 3.06
1732 1830 4.762289 AGATGGACCAGAGTTTATGACC 57.238 45.455 0.00 0.00 0.00 4.02
1733 1831 4.366267 AGATGGACCAGAGTTTATGACCT 58.634 43.478 0.00 0.00 0.00 3.85
1738 1836 4.470304 GGACCAGAGTTTATGACCTACCTT 59.530 45.833 0.00 0.00 0.00 3.50
1742 1840 6.070938 ACCAGAGTTTATGACCTACCTTACAC 60.071 42.308 0.00 0.00 0.00 2.90
1809 1907 9.331282 ACTCTGTATCCTGTTTAATATTTGCTC 57.669 33.333 0.00 0.00 0.00 4.26
1819 1917 9.553064 CTGTTTAATATTTGCTCAGACTATCCT 57.447 33.333 0.00 0.00 0.00 3.24
1850 1948 2.544685 TGGTTGCGTTGGTTTGATTTG 58.455 42.857 0.00 0.00 0.00 2.32
1853 1952 2.112475 TGCGTTGGTTTGATTTGTCG 57.888 45.000 0.00 0.00 0.00 4.35
1887 1986 9.230932 GCTATTAAAATTGAGACAGCTTTCATC 57.769 33.333 2.12 0.00 0.00 2.92
1924 2023 7.959175 TGTACTAGTTCATACCATAATCCACC 58.041 38.462 0.00 0.00 0.00 4.61
1934 2033 5.789643 ACCATAATCCACCATGTTTATGC 57.210 39.130 0.00 0.00 32.97 3.14
1998 2097 4.830046 CCACTCACTGTAGGCATAGATACT 59.170 45.833 0.00 0.00 0.00 2.12
2005 2104 5.775701 ACTGTAGGCATAGATACTACAAGGG 59.224 44.000 0.00 0.00 44.37 3.95
2008 2107 2.027100 GGCATAGATACTACAAGGGCCC 60.027 54.545 16.46 16.46 32.89 5.80
2017 2116 2.587322 TACAAGGGCCCGAATGCTCG 62.587 60.000 18.44 2.08 45.02 5.03
2038 2137 7.768582 TGCTCGGACATTTCTCTGAAAATAATA 59.231 33.333 0.00 0.00 0.00 0.98
2039 2138 8.612619 GCTCGGACATTTCTCTGAAAATAATAA 58.387 33.333 0.00 0.00 0.00 1.40
2040 2139 9.922305 CTCGGACATTTCTCTGAAAATAATAAC 57.078 33.333 0.00 0.00 0.00 1.89
2041 2140 8.889717 TCGGACATTTCTCTGAAAATAATAACC 58.110 33.333 0.00 0.00 0.00 2.85
2042 2141 8.129211 CGGACATTTCTCTGAAAATAATAACCC 58.871 37.037 0.00 0.00 0.00 4.11
2043 2142 8.129211 GGACATTTCTCTGAAAATAATAACCCG 58.871 37.037 0.00 0.00 0.00 5.28
2044 2143 8.801882 ACATTTCTCTGAAAATAATAACCCGA 57.198 30.769 0.00 0.00 0.00 5.14
2045 2144 8.893727 ACATTTCTCTGAAAATAATAACCCGAG 58.106 33.333 0.00 0.00 0.00 4.63
2046 2145 6.920569 TTCTCTGAAAATAATAACCCGAGC 57.079 37.500 0.00 0.00 0.00 5.03
2047 2146 6.235231 TCTCTGAAAATAATAACCCGAGCT 57.765 37.500 0.00 0.00 0.00 4.09
2048 2147 7.356089 TCTCTGAAAATAATAACCCGAGCTA 57.644 36.000 0.00 0.00 0.00 3.32
2049 2148 7.963532 TCTCTGAAAATAATAACCCGAGCTAT 58.036 34.615 0.00 0.00 0.00 2.97
2050 2149 8.088981 TCTCTGAAAATAATAACCCGAGCTATC 58.911 37.037 0.00 0.00 0.00 2.08
2051 2150 7.159372 TCTGAAAATAATAACCCGAGCTATCC 58.841 38.462 0.00 0.00 0.00 2.59
2052 2151 6.833041 TGAAAATAATAACCCGAGCTATCCA 58.167 36.000 0.00 0.00 0.00 3.41
2053 2152 7.284074 TGAAAATAATAACCCGAGCTATCCAA 58.716 34.615 0.00 0.00 0.00 3.53
2054 2153 7.776030 TGAAAATAATAACCCGAGCTATCCAAA 59.224 33.333 0.00 0.00 0.00 3.28
2055 2154 8.706322 AAAATAATAACCCGAGCTATCCAAAT 57.294 30.769 0.00 0.00 0.00 2.32
2056 2155 8.706322 AAATAATAACCCGAGCTATCCAAATT 57.294 30.769 0.00 0.00 0.00 1.82
2057 2156 7.923414 ATAATAACCCGAGCTATCCAAATTC 57.077 36.000 0.00 0.00 0.00 2.17
2058 2157 3.933861 AACCCGAGCTATCCAAATTCT 57.066 42.857 0.00 0.00 0.00 2.40
2059 2158 6.681729 ATAACCCGAGCTATCCAAATTCTA 57.318 37.500 0.00 0.00 0.00 2.10
2060 2159 5.367945 AACCCGAGCTATCCAAATTCTAA 57.632 39.130 0.00 0.00 0.00 2.10
2061 2160 5.367945 ACCCGAGCTATCCAAATTCTAAA 57.632 39.130 0.00 0.00 0.00 1.85
2062 2161 5.941788 ACCCGAGCTATCCAAATTCTAAAT 58.058 37.500 0.00 0.00 0.00 1.40
2063 2162 5.765182 ACCCGAGCTATCCAAATTCTAAATG 59.235 40.000 0.00 0.00 0.00 2.32
2064 2163 5.765182 CCCGAGCTATCCAAATTCTAAATGT 59.235 40.000 0.00 0.00 0.00 2.71
2065 2164 6.934645 CCCGAGCTATCCAAATTCTAAATGTA 59.065 38.462 0.00 0.00 0.00 2.29
2066 2165 7.095187 CCCGAGCTATCCAAATTCTAAATGTAC 60.095 40.741 0.00 0.00 0.00 2.90
2067 2166 7.657761 CCGAGCTATCCAAATTCTAAATGTACT 59.342 37.037 0.00 0.00 0.00 2.73
2068 2167 8.491152 CGAGCTATCCAAATTCTAAATGTACTG 58.509 37.037 0.00 0.00 0.00 2.74
2069 2168 9.331282 GAGCTATCCAAATTCTAAATGTACTGT 57.669 33.333 0.00 0.00 0.00 3.55
2070 2169 9.113838 AGCTATCCAAATTCTAAATGTACTGTG 57.886 33.333 0.00 0.00 0.00 3.66
2071 2170 9.109393 GCTATCCAAATTCTAAATGTACTGTGA 57.891 33.333 0.00 0.00 0.00 3.58
2073 2172 7.921786 TCCAAATTCTAAATGTACTGTGAGG 57.078 36.000 0.00 0.00 0.00 3.86
2074 2173 7.458397 TCCAAATTCTAAATGTACTGTGAGGT 58.542 34.615 0.00 0.00 0.00 3.85
2075 2174 7.942341 TCCAAATTCTAAATGTACTGTGAGGTT 59.058 33.333 0.00 0.00 0.00 3.50
2076 2175 8.576442 CCAAATTCTAAATGTACTGTGAGGTTT 58.424 33.333 0.00 0.00 0.00 3.27
2077 2176 9.612620 CAAATTCTAAATGTACTGTGAGGTTTC 57.387 33.333 0.00 0.00 0.00 2.78
2078 2177 8.918202 AATTCTAAATGTACTGTGAGGTTTCA 57.082 30.769 0.00 0.00 0.00 2.69
2079 2178 7.962964 TTCTAAATGTACTGTGAGGTTTCAG 57.037 36.000 0.00 0.00 37.65 3.02
2080 2179 7.062749 TCTAAATGTACTGTGAGGTTTCAGT 57.937 36.000 0.00 0.00 45.21 3.41
2081 2180 7.506114 TCTAAATGTACTGTGAGGTTTCAGTT 58.494 34.615 3.25 0.00 43.39 3.16
2082 2181 6.619801 AAATGTACTGTGAGGTTTCAGTTC 57.380 37.500 3.25 0.00 43.39 3.01
2083 2182 5.552870 ATGTACTGTGAGGTTTCAGTTCT 57.447 39.130 3.25 0.00 43.39 3.01
2084 2183 4.693283 TGTACTGTGAGGTTTCAGTTCTG 58.307 43.478 3.25 0.00 43.39 3.02
2085 2184 3.914426 ACTGTGAGGTTTCAGTTCTGT 57.086 42.857 0.00 0.00 41.33 3.41
2086 2185 3.535561 ACTGTGAGGTTTCAGTTCTGTG 58.464 45.455 0.00 0.00 41.33 3.66
2087 2186 3.055094 ACTGTGAGGTTTCAGTTCTGTGT 60.055 43.478 0.00 0.00 41.33 3.72
2088 2187 3.941483 CTGTGAGGTTTCAGTTCTGTGTT 59.059 43.478 0.00 0.00 32.98 3.32
2089 2188 3.689161 TGTGAGGTTTCAGTTCTGTGTTG 59.311 43.478 0.00 0.00 32.98 3.33
2090 2189 2.682856 TGAGGTTTCAGTTCTGTGTTGC 59.317 45.455 0.00 0.00 0.00 4.17
2091 2190 2.024414 AGGTTTCAGTTCTGTGTTGCC 58.976 47.619 0.00 0.00 0.00 4.52
2092 2191 1.748493 GGTTTCAGTTCTGTGTTGCCA 59.252 47.619 0.00 0.00 0.00 4.92
2093 2192 2.223572 GGTTTCAGTTCTGTGTTGCCAG 60.224 50.000 0.00 0.00 0.00 4.85
2094 2193 2.682856 GTTTCAGTTCTGTGTTGCCAGA 59.317 45.455 0.00 0.00 39.65 3.86
2095 2194 2.245159 TCAGTTCTGTGTTGCCAGAG 57.755 50.000 0.00 0.00 42.16 3.35
2096 2195 1.486310 TCAGTTCTGTGTTGCCAGAGT 59.514 47.619 0.00 0.00 42.16 3.24
2097 2196 1.600957 CAGTTCTGTGTTGCCAGAGTG 59.399 52.381 0.00 0.00 42.16 3.51
2098 2197 1.210478 AGTTCTGTGTTGCCAGAGTGT 59.790 47.619 0.00 0.00 42.16 3.55
2119 2218 6.987992 AGTGTAAGGTCTTTGTTCGTTGAATA 59.012 34.615 0.00 0.00 0.00 1.75
2120 2219 7.660208 AGTGTAAGGTCTTTGTTCGTTGAATAT 59.340 33.333 0.00 0.00 0.00 1.28
2132 2231 6.147000 TGTTCGTTGAATATATATGCACGCAT 59.853 34.615 9.82 9.82 40.19 4.73
2135 2234 7.894847 TCGTTGAATATATATGCACGCATTAG 58.105 34.615 10.23 1.43 37.82 1.73
2146 2245 2.599848 GCACGCATTAGATGTTAAGCCG 60.600 50.000 0.00 0.00 0.00 5.52
2166 2265 6.947464 AGCCGTATATAAATGCAGGATAGTT 58.053 36.000 0.00 0.00 0.00 2.24
2178 2277 5.800296 TGCAGGATAGTTAGTGCAAACTAA 58.200 37.500 13.54 4.18 43.30 2.24
2182 2281 6.978659 CAGGATAGTTAGTGCAAACTAATCGA 59.021 38.462 13.54 0.00 43.30 3.59
2195 2302 8.547894 TGCAAACTAATCGACATGACAATATAC 58.452 33.333 0.00 0.00 0.00 1.47
2200 2307 8.082852 ACTAATCGACATGACAATATACCTCAC 58.917 37.037 0.00 0.00 0.00 3.51
2204 2311 6.042777 CGACATGACAATATACCTCACTGTT 58.957 40.000 0.00 0.00 0.00 3.16
2206 2313 6.115446 ACATGACAATATACCTCACTGTTGG 58.885 40.000 0.00 0.00 0.00 3.77
2216 2323 1.884579 CTCACTGTTGGCTCTTGCAAT 59.115 47.619 0.00 0.00 41.91 3.56
2223 2330 3.640967 TGTTGGCTCTTGCAATTTAACCT 59.359 39.130 0.00 0.00 41.91 3.50
2224 2331 3.940209 TGGCTCTTGCAATTTAACCTG 57.060 42.857 0.00 0.00 41.91 4.00
2225 2332 3.495331 TGGCTCTTGCAATTTAACCTGA 58.505 40.909 0.00 0.00 41.91 3.86
2226 2333 4.088634 TGGCTCTTGCAATTTAACCTGAT 58.911 39.130 0.00 0.00 41.91 2.90
2227 2334 4.082081 TGGCTCTTGCAATTTAACCTGATG 60.082 41.667 0.00 0.00 41.91 3.07
2228 2335 4.082026 GGCTCTTGCAATTTAACCTGATGT 60.082 41.667 0.00 0.00 41.91 3.06
2307 2416 5.321102 CTGCTCCTCAGGACATACTAGTAT 58.679 45.833 9.71 9.71 39.15 2.12
2332 2441 3.068024 GCTAGAGGACTGAACCATGAGAG 59.932 52.174 0.00 0.00 0.00 3.20
2341 2450 5.121811 ACTGAACCATGAGAGCAATGTATC 58.878 41.667 0.00 0.00 0.00 2.24
2349 2458 7.994911 ACCATGAGAGCAATGTATCAATTTAGA 59.005 33.333 0.00 0.00 0.00 2.10
2536 2713 3.969976 CCCCACTAAGGAATCTGATGAGA 59.030 47.826 0.00 0.00 41.22 3.27
2546 2723 6.584488 AGGAATCTGATGAGATTGAAGACAG 58.416 40.000 12.46 0.00 47.00 3.51
2565 2742 6.779860 AGACAGTGGGTAAGTAATTGAACAT 58.220 36.000 0.00 0.00 0.00 2.71
2601 2780 1.902938 AGCTTTCTTGAGTGCCTTCC 58.097 50.000 0.00 0.00 0.00 3.46
2699 2880 5.302568 TGCACCTGACTGAAAATCTGAATTT 59.697 36.000 0.00 0.00 36.64 1.82
2770 2951 7.721402 TGAATTTTAGTTACACAACAATGCCT 58.279 30.769 0.00 0.00 37.10 4.75
2957 3220 7.701539 TCATAAATTGTTAGTGCCAGATGTT 57.298 32.000 0.00 0.00 0.00 2.71
3043 3424 8.824159 ATTGATGACATGTAGCATACTTACTC 57.176 34.615 0.00 0.00 43.54 2.59
3044 3425 7.588497 TGATGACATGTAGCATACTTACTCT 57.412 36.000 0.00 0.00 43.54 3.24
3045 3426 8.011844 TGATGACATGTAGCATACTTACTCTT 57.988 34.615 0.00 0.00 43.54 2.85
3047 3428 9.967346 GATGACATGTAGCATACTTACTCTTTA 57.033 33.333 0.00 0.00 43.54 1.85
3070 3454 9.922477 TTTATTAATGGTGGGTGTATCATTGTA 57.078 29.630 0.00 0.00 33.63 2.41
3071 3455 9.922477 TTATTAATGGTGGGTGTATCATTGTAA 57.078 29.630 0.00 0.00 33.63 2.41
3147 3533 1.044790 TCCTCATGATGAGCGGCTCA 61.045 55.000 32.47 32.47 42.98 4.26
3246 3632 4.018050 AGCTGGAGGTAACATTTCTGGATT 60.018 41.667 0.00 0.00 41.41 3.01
3266 3652 5.014123 GGATTCCCCATATCATACCTTCACA 59.986 44.000 0.00 0.00 34.14 3.58
3294 3680 3.503363 GTGACATCCTTGCATCTTTCACA 59.497 43.478 0.00 0.00 33.77 3.58
3328 3718 4.214119 CACCATATTTATCTGCAGAACCCG 59.786 45.833 22.50 5.73 0.00 5.28
3463 3853 7.014905 TGTGAGTAGTAACTGGTAGATGTTTGT 59.985 37.037 0.00 0.00 35.56 2.83
3484 3874 6.751514 TGTTTCAGTTAGTTTTGAGCTCAA 57.248 33.333 25.16 25.16 0.00 3.02
3502 3892 3.899734 TCAATTTCCTGTTGTGCATTCG 58.100 40.909 0.00 0.00 0.00 3.34
3516 3906 1.596464 GCATTCGCTAACTGCTCATGC 60.596 52.381 0.00 0.00 43.00 4.06
3534 3924 1.202687 TGCTGAACCACTCTGTTCCTG 60.203 52.381 1.84 0.00 43.17 3.86
3535 3925 1.879796 GCTGAACCACTCTGTTCCTGG 60.880 57.143 1.84 0.00 43.17 4.45
3559 3949 2.165998 GTGGAGCAGCAAAAGGAGAAT 58.834 47.619 0.00 0.00 0.00 2.40
3600 3990 1.670967 CGATGCAGCTCAAGAGTGACA 60.671 52.381 0.00 0.00 0.00 3.58
3613 4003 1.001974 GAGTGACATGGTACTGGTGCA 59.998 52.381 8.61 0.00 0.00 4.57
3779 4189 9.219603 CAGTTCAGTATCCAGAATTTTGAGTTA 57.780 33.333 0.00 0.00 0.00 2.24
3819 4229 9.166173 TGTCTTATGTCTTAGTGATCAAATTGG 57.834 33.333 0.00 0.00 0.00 3.16
3861 4273 4.434195 TGTGGACCATATATAGCCATGGA 58.566 43.478 18.40 0.00 43.80 3.41
3880 4292 2.809696 GGAACTTGCCGTGCTTACTTTA 59.190 45.455 0.00 0.00 0.00 1.85
3929 4341 5.581126 TTTTGCTGTGTCTCAATCTGTTT 57.419 34.783 0.00 0.00 0.00 2.83
3957 4369 5.358090 TGCTTGCAGATTTTGATGTTTTGA 58.642 33.333 0.00 0.00 0.00 2.69
4066 4479 3.499918 CAGAGAGCAACCGACTGAAAAAT 59.500 43.478 0.00 0.00 0.00 1.82
4078 4491 5.385617 CGACTGAAAAATTGAGGTTAGCTG 58.614 41.667 0.00 0.00 0.00 4.24
4079 4492 5.617751 CGACTGAAAAATTGAGGTTAGCTGG 60.618 44.000 0.00 0.00 0.00 4.85
4080 4493 5.140454 ACTGAAAAATTGAGGTTAGCTGGT 58.860 37.500 0.00 0.00 0.00 4.00
4081 4494 5.598417 ACTGAAAAATTGAGGTTAGCTGGTT 59.402 36.000 0.00 0.00 0.00 3.67
4083 4496 6.977213 TGAAAAATTGAGGTTAGCTGGTTAC 58.023 36.000 0.00 0.00 0.00 2.50
4085 4498 2.754946 TTGAGGTTAGCTGGTTACCG 57.245 50.000 9.12 0.00 37.04 4.02
4087 4500 2.250031 TGAGGTTAGCTGGTTACCGAA 58.750 47.619 9.12 0.00 37.04 4.30
4090 4503 4.467082 TGAGGTTAGCTGGTTACCGAAATA 59.533 41.667 9.12 0.00 37.04 1.40
4091 4504 5.046448 TGAGGTTAGCTGGTTACCGAAATAA 60.046 40.000 9.12 0.00 37.04 1.40
4092 4505 5.181009 AGGTTAGCTGGTTACCGAAATAAC 58.819 41.667 9.12 3.85 37.04 1.89
4093 4506 5.046087 AGGTTAGCTGGTTACCGAAATAACT 60.046 40.000 9.12 0.00 37.04 2.24
4094 4507 6.155049 AGGTTAGCTGGTTACCGAAATAACTA 59.845 38.462 9.12 0.00 37.04 2.24
4095 4508 6.478016 GGTTAGCTGGTTACCGAAATAACTAG 59.522 42.308 0.00 10.92 43.12 2.57
4096 4509 5.927281 AGCTGGTTACCGAAATAACTAGA 57.073 39.130 16.29 0.00 42.98 2.43
4097 4510 5.903810 AGCTGGTTACCGAAATAACTAGAG 58.096 41.667 16.29 7.39 42.98 2.43
4098 4511 5.421374 AGCTGGTTACCGAAATAACTAGAGT 59.579 40.000 16.29 5.19 42.98 3.24
4099 4512 6.604795 AGCTGGTTACCGAAATAACTAGAGTA 59.395 38.462 16.29 0.00 42.98 2.59
4100 4513 7.287235 AGCTGGTTACCGAAATAACTAGAGTAT 59.713 37.037 16.29 0.00 42.98 2.12
4101 4514 7.924947 GCTGGTTACCGAAATAACTAGAGTATT 59.075 37.037 16.29 0.00 42.98 1.89
4127 4540 8.840200 AGTAGTAATCAAATAGTCTCCCTTCA 57.160 34.615 0.00 0.00 0.00 3.02
4128 4541 9.268282 AGTAGTAATCAAATAGTCTCCCTTCAA 57.732 33.333 0.00 0.00 0.00 2.69
4131 4544 9.981460 AGTAATCAAATAGTCTCCCTTCAATTT 57.019 29.630 0.00 0.00 0.00 1.82
4134 4547 6.924111 TCAAATAGTCTCCCTTCAATTTTGC 58.076 36.000 0.00 0.00 0.00 3.68
4135 4548 6.721208 TCAAATAGTCTCCCTTCAATTTTGCT 59.279 34.615 0.00 0.00 0.00 3.91
4136 4549 6.521151 AATAGTCTCCCTTCAATTTTGCTG 57.479 37.500 0.00 0.00 0.00 4.41
4137 4550 3.837355 AGTCTCCCTTCAATTTTGCTGT 58.163 40.909 0.00 0.00 0.00 4.40
4138 4551 3.571401 AGTCTCCCTTCAATTTTGCTGTG 59.429 43.478 0.00 0.00 0.00 3.66
4139 4552 2.892852 TCTCCCTTCAATTTTGCTGTGG 59.107 45.455 0.00 0.00 0.00 4.17
4140 4553 2.892852 CTCCCTTCAATTTTGCTGTGGA 59.107 45.455 0.00 0.00 0.00 4.02
4141 4554 3.303938 TCCCTTCAATTTTGCTGTGGAA 58.696 40.909 0.00 0.00 0.00 3.53
4145 4558 5.464168 CCTTCAATTTTGCTGTGGAACTAG 58.536 41.667 0.00 0.00 38.04 2.57
4155 4568 3.429684 GCTGTGGAACTAGACTAGCTTCC 60.430 52.174 23.44 23.44 38.04 3.46
4159 4572 2.101750 GGAACTAGACTAGCTTCCCTGC 59.898 54.545 21.49 7.33 33.59 4.85
4171 4584 5.116084 AGCTTCCCTGCTTGATTTATACA 57.884 39.130 0.00 0.00 40.93 2.29
4180 4593 7.703621 CCCTGCTTGATTTATACAAACAATCAG 59.296 37.037 0.00 0.00 38.01 2.90
4183 4596 9.844790 TGCTTGATTTATACAAACAATCAGAAG 57.155 29.630 0.00 0.00 38.01 2.85
4196 4609 9.414295 CAAACAATCAGAAGAATGAGCAAAATA 57.586 29.630 0.00 0.00 31.44 1.40
4200 4613 6.432607 TCAGAAGAATGAGCAAAATAGCTG 57.567 37.500 0.00 0.00 46.75 4.24
4215 4628 1.210204 AGCTGCCCATTCTTCCAGGA 61.210 55.000 0.00 0.00 0.00 3.86
4252 4665 7.507733 AATCTAGATCTTTGGATTGATGCAC 57.492 36.000 5.51 0.00 31.46 4.57
4319 4732 7.335924 TGTTAAATTATCTACCAGAACAGGCAC 59.664 37.037 0.00 0.00 0.00 5.01
4321 4734 0.537188 ATCTACCAGAACAGGCACGG 59.463 55.000 0.00 0.00 0.00 4.94
4327 4740 2.159382 CCAGAACAGGCACGGTAAATT 58.841 47.619 0.00 0.00 34.27 1.82
4328 4741 2.161609 CCAGAACAGGCACGGTAAATTC 59.838 50.000 0.00 0.00 34.27 2.17
4329 4742 2.811431 CAGAACAGGCACGGTAAATTCA 59.189 45.455 0.00 0.00 34.27 2.57
4330 4743 3.074412 AGAACAGGCACGGTAAATTCAG 58.926 45.455 0.00 0.00 34.27 3.02
4331 4744 2.851263 ACAGGCACGGTAAATTCAGA 57.149 45.000 0.00 0.00 33.08 3.27
4332 4745 3.350219 ACAGGCACGGTAAATTCAGAT 57.650 42.857 0.00 0.00 33.08 2.90
4333 4746 3.686016 ACAGGCACGGTAAATTCAGATT 58.314 40.909 0.00 0.00 33.08 2.40
4334 4747 4.079253 ACAGGCACGGTAAATTCAGATTT 58.921 39.130 0.00 0.00 38.88 2.17
4335 4748 5.250200 ACAGGCACGGTAAATTCAGATTTA 58.750 37.500 0.00 0.00 36.82 1.40
4336 4749 5.708230 ACAGGCACGGTAAATTCAGATTTAA 59.292 36.000 0.00 0.00 38.93 1.52
4337 4750 6.377146 ACAGGCACGGTAAATTCAGATTTAAT 59.623 34.615 0.00 0.00 38.93 1.40
4338 4751 6.912591 CAGGCACGGTAAATTCAGATTTAATC 59.087 38.462 0.00 0.00 38.93 1.75
4339 4752 6.828785 AGGCACGGTAAATTCAGATTTAATCT 59.171 34.615 0.99 0.99 38.93 2.40
4362 4775 9.835389 ATCTGAACATCATTTGGAAAAGAAAAA 57.165 25.926 0.00 0.00 0.00 1.94
4406 4832 8.485976 AAAGATGTTTAGAGTGAGATAACTGC 57.514 34.615 0.00 0.00 0.00 4.40
4407 4833 7.175347 AGATGTTTAGAGTGAGATAACTGCA 57.825 36.000 0.00 0.00 0.00 4.41
4408 4834 7.615403 AGATGTTTAGAGTGAGATAACTGCAA 58.385 34.615 0.00 0.00 0.00 4.08
4409 4835 7.547370 AGATGTTTAGAGTGAGATAACTGCAAC 59.453 37.037 0.00 0.00 0.00 4.17
4410 4836 5.932303 TGTTTAGAGTGAGATAACTGCAACC 59.068 40.000 0.00 0.00 0.00 3.77
4411 4837 5.738619 TTAGAGTGAGATAACTGCAACCA 57.261 39.130 0.00 0.00 0.00 3.67
4414 4840 4.040952 AGAGTGAGATAACTGCAACCAACT 59.959 41.667 0.00 0.00 0.00 3.16
4415 4841 4.319177 AGTGAGATAACTGCAACCAACTC 58.681 43.478 0.00 0.00 0.00 3.01
4416 4842 4.065088 GTGAGATAACTGCAACCAACTCA 58.935 43.478 7.98 7.98 0.00 3.41
4420 4846 6.939730 TGAGATAACTGCAACCAACTCATTTA 59.060 34.615 7.98 0.00 0.00 1.40
4421 4847 7.611467 TGAGATAACTGCAACCAACTCATTTAT 59.389 33.333 7.98 0.00 0.00 1.40
4422 4848 9.109393 GAGATAACTGCAACCAACTCATTTATA 57.891 33.333 0.00 0.00 0.00 0.98
4423 4849 9.632638 AGATAACTGCAACCAACTCATTTATAT 57.367 29.630 0.00 0.00 0.00 0.86
4508 4934 4.219070 ACACCGTACTGTATTAGTCTTGCA 59.781 41.667 0.00 0.00 40.89 4.08
4512 4938 5.063060 CCGTACTGTATTAGTCTTGCAAACC 59.937 44.000 0.00 0.00 40.89 3.27
4513 4939 5.220154 CGTACTGTATTAGTCTTGCAAACCG 60.220 44.000 0.00 0.00 40.89 4.44
4516 4942 3.998341 TGTATTAGTCTTGCAAACCGGAC 59.002 43.478 9.46 4.43 0.00 4.79
4517 4943 1.504359 TTAGTCTTGCAAACCGGACG 58.496 50.000 9.46 0.00 34.34 4.79
4518 4944 0.675083 TAGTCTTGCAAACCGGACGA 59.325 50.000 9.46 0.00 34.34 4.20
4526 4952 2.031857 TGCAAACCGGACGACAATTAAC 60.032 45.455 9.46 0.00 0.00 2.01
4529 4955 1.799544 ACCGGACGACAATTAACCAC 58.200 50.000 9.46 0.00 0.00 4.16
4534 4960 5.163426 ACCGGACGACAATTAACCACATATA 60.163 40.000 9.46 0.00 0.00 0.86
4535 4961 5.929992 CCGGACGACAATTAACCACATATAT 59.070 40.000 0.00 0.00 0.00 0.86
4536 4962 6.128661 CCGGACGACAATTAACCACATATATG 60.129 42.308 11.29 11.29 0.00 1.78
4537 4963 6.422701 CGGACGACAATTAACCACATATATGT 59.577 38.462 12.75 12.75 42.84 2.29
4539 4965 8.706035 GGACGACAATTAACCACATATATGTAC 58.294 37.037 17.86 0.00 39.39 2.90
4540 4966 9.251792 GACGACAATTAACCACATATATGTACA 57.748 33.333 17.86 0.00 39.39 2.90
4541 4967 9.772973 ACGACAATTAACCACATATATGTACAT 57.227 29.630 17.86 13.93 39.39 2.29
4543 4969 9.825972 GACAATTAACCACATATATGTACATGC 57.174 33.333 17.86 4.66 39.39 4.06
4544 4970 8.792633 ACAATTAACCACATATATGTACATGCC 58.207 33.333 17.86 0.00 39.39 4.40
4545 4971 9.013229 CAATTAACCACATATATGTACATGCCT 57.987 33.333 17.86 5.72 39.39 4.75
4546 4972 9.586732 AATTAACCACATATATGTACATGCCTT 57.413 29.630 17.86 4.82 39.39 4.35
4547 4973 6.882610 AACCACATATATGTACATGCCTTG 57.117 37.500 17.86 12.22 39.39 3.61
4548 4974 6.186420 ACCACATATATGTACATGCCTTGA 57.814 37.500 17.86 0.00 39.39 3.02
4556 4982 7.741027 ATATGTACATGCCTTGAGAATGAAG 57.259 36.000 18.81 0.00 0.00 3.02
4582 5008 4.771590 TTAAAGCAGAAATCCAGTGCTG 57.228 40.909 0.00 0.00 46.86 4.41
4583 5009 1.542492 AAGCAGAAATCCAGTGCTGG 58.458 50.000 11.82 11.82 46.86 4.85
4588 5014 3.624777 CAGAAATCCAGTGCTGGGTATT 58.375 45.455 17.23 8.51 44.93 1.89
4598 5024 5.128171 CCAGTGCTGGGTATTAGTGTAGTAA 59.872 44.000 10.28 0.00 46.81 2.24
4604 5030 8.952278 TGCTGGGTATTAGTGTAGTAAATTTTG 58.048 33.333 0.00 0.00 0.00 2.44
4624 5050 8.964420 ATTTTGTGATACATGAAAAAGGTACG 57.036 30.769 0.00 0.00 0.00 3.67
4625 5051 7.499321 TTTGTGATACATGAAAAAGGTACGT 57.501 32.000 0.00 0.00 0.00 3.57
4626 5052 8.604640 TTTGTGATACATGAAAAAGGTACGTA 57.395 30.769 0.00 0.00 0.00 3.57
4627 5053 7.585286 TGTGATACATGAAAAAGGTACGTAC 57.415 36.000 17.56 17.56 0.00 3.67
4628 5054 7.153315 TGTGATACATGAAAAAGGTACGTACA 58.847 34.615 26.02 5.17 0.00 2.90
4629 5055 7.820386 TGTGATACATGAAAAAGGTACGTACAT 59.180 33.333 26.02 17.76 0.00 2.29
4630 5056 9.304731 GTGATACATGAAAAAGGTACGTACATA 57.695 33.333 26.02 5.15 0.00 2.29
4634 5060 6.935771 ACATGAAAAAGGTACGTACATAACCA 59.064 34.615 26.02 15.27 35.64 3.67
4636 5062 7.982761 TGAAAAAGGTACGTACATAACCAAT 57.017 32.000 26.02 0.96 35.64 3.16
4637 5063 9.669887 ATGAAAAAGGTACGTACATAACCAATA 57.330 29.630 26.02 5.99 35.64 1.90
4661 5087 6.889301 ATAATATGACCAACAGAAGCCATG 57.111 37.500 0.00 0.00 0.00 3.66
4664 5090 2.778299 TGACCAACAGAAGCCATGTAC 58.222 47.619 0.00 0.00 0.00 2.90
4665 5091 2.105649 TGACCAACAGAAGCCATGTACA 59.894 45.455 0.00 0.00 0.00 2.90
4666 5092 3.244875 TGACCAACAGAAGCCATGTACAT 60.245 43.478 1.41 1.41 0.00 2.29
4667 5093 4.019771 TGACCAACAGAAGCCATGTACATA 60.020 41.667 8.32 0.00 0.00 2.29
4670 5096 5.415701 ACCAACAGAAGCCATGTACATAAAG 59.584 40.000 8.32 1.73 0.00 1.85
4678 5104 6.683974 AGCCATGTACATAAAGCTTTACAG 57.316 37.500 20.85 17.66 0.00 2.74
4686 5112 8.347035 TGTACATAAAGCTTTACAGAAACCAAC 58.653 33.333 20.85 9.51 0.00 3.77
4691 5117 3.117663 AGCTTTACAGAAACCAACCAGGA 60.118 43.478 0.00 0.00 41.22 3.86
4697 5123 4.149598 ACAGAAACCAACCAGGAATTACC 58.850 43.478 0.00 0.00 41.22 2.85
4699 5125 4.586841 CAGAAACCAACCAGGAATTACCAA 59.413 41.667 0.00 0.00 41.22 3.67
4700 5126 5.069781 CAGAAACCAACCAGGAATTACCAAA 59.930 40.000 0.00 0.00 41.22 3.28
4702 5128 5.959583 AACCAACCAGGAATTACCAAAAA 57.040 34.783 0.00 0.00 41.22 1.94
4747 5173 7.443259 TCGGTAGAAAGAAAAATTACTTGGG 57.557 36.000 0.00 0.00 0.00 4.12
4748 5174 6.431852 TCGGTAGAAAGAAAAATTACTTGGGG 59.568 38.462 0.00 0.00 0.00 4.96
4751 5177 8.304596 GGTAGAAAGAAAAATTACTTGGGGAAG 58.695 37.037 0.00 0.00 0.00 3.46
4758 5184 9.078990 AGAAAAATTACTTGGGGAAGTAAAGAG 57.921 33.333 10.55 0.00 45.20 2.85
4760 5186 7.997773 AAATTACTTGGGGAAGTAAAGAGAC 57.002 36.000 10.55 0.00 45.20 3.36
4761 5187 3.679824 ACTTGGGGAAGTAAAGAGACG 57.320 47.619 0.00 0.00 0.00 4.18
4762 5188 3.236896 ACTTGGGGAAGTAAAGAGACGA 58.763 45.455 0.00 0.00 0.00 4.20
4763 5189 3.838903 ACTTGGGGAAGTAAAGAGACGAT 59.161 43.478 0.00 0.00 0.00 3.73
4764 5190 3.887621 TGGGGAAGTAAAGAGACGATG 57.112 47.619 0.00 0.00 0.00 3.84
4765 5191 3.437213 TGGGGAAGTAAAGAGACGATGA 58.563 45.455 0.00 0.00 0.00 2.92
4766 5192 3.194968 TGGGGAAGTAAAGAGACGATGAC 59.805 47.826 0.00 0.00 0.00 3.06
4767 5193 3.447944 GGGGAAGTAAAGAGACGATGACT 59.552 47.826 0.00 0.00 0.00 3.41
4779 5208 2.356382 GACGATGACTCTTCAGGACGAT 59.644 50.000 0.00 0.00 34.35 3.73
4780 5209 2.755655 ACGATGACTCTTCAGGACGATT 59.244 45.455 0.00 0.00 34.35 3.34
4790 5219 1.156736 CAGGACGATTGTGGTGGTTC 58.843 55.000 0.00 0.00 0.00 3.62
4795 5224 0.036164 CGATTGTGGTGGTTCCTCCA 59.964 55.000 8.35 8.35 45.01 3.86
4803 5232 2.538790 TGGTTCCTCCAGCTTCACA 58.461 52.632 0.00 0.00 41.93 3.58
4804 5233 0.843309 TGGTTCCTCCAGCTTCACAA 59.157 50.000 0.00 0.00 41.93 3.33
4805 5234 1.239347 GGTTCCTCCAGCTTCACAAC 58.761 55.000 0.00 0.00 35.97 3.32
4806 5235 1.476833 GGTTCCTCCAGCTTCACAACA 60.477 52.381 0.00 0.00 35.97 3.33
4807 5236 1.876156 GTTCCTCCAGCTTCACAACAG 59.124 52.381 0.00 0.00 0.00 3.16
4808 5237 0.397941 TCCTCCAGCTTCACAACAGG 59.602 55.000 0.00 0.00 0.00 4.00
4809 5238 1.239968 CCTCCAGCTTCACAACAGGC 61.240 60.000 0.00 0.00 0.00 4.85
4810 5239 0.250640 CTCCAGCTTCACAACAGGCT 60.251 55.000 0.00 0.00 35.23 4.58
4811 5240 0.183492 TCCAGCTTCACAACAGGCTT 59.817 50.000 0.00 0.00 32.30 4.35
4823 5252 0.610232 ACAGGCTTGTTGGGATGCTC 60.610 55.000 0.00 0.00 32.28 4.26
4824 5253 1.377725 AGGCTTGTTGGGATGCTCG 60.378 57.895 0.00 0.00 0.00 5.03
4860 5289 0.823356 GTTGCCCCTTCAGTGCTTCA 60.823 55.000 0.00 0.00 0.00 3.02
4867 5296 0.236711 CTTCAGTGCTTCAGCGTTGG 59.763 55.000 0.00 0.00 45.83 3.77
4868 5297 0.179059 TTCAGTGCTTCAGCGTTGGA 60.179 50.000 0.00 0.00 45.83 3.53
4871 5300 0.463654 AGTGCTTCAGCGTTGGAACA 60.464 50.000 0.00 0.00 45.83 3.18
4872 5301 0.593128 GTGCTTCAGCGTTGGAACAT 59.407 50.000 0.00 0.00 45.83 2.71
4877 5306 3.668656 GCTTCAGCGTTGGAACATTTAAC 59.331 43.478 0.00 0.00 39.30 2.01
4886 5315 6.622896 GCGTTGGAACATTTAACTAGCAAGAT 60.623 38.462 0.00 0.00 39.30 2.40
4987 5416 5.819059 GCTCAAGCTCCTTCATTGATTTAG 58.181 41.667 0.00 0.00 38.21 1.85
4989 5418 6.262720 GCTCAAGCTCCTTCATTGATTTAGAT 59.737 38.462 0.00 0.00 38.21 1.98
4998 5427 9.973661 TCCTTCATTGATTTAGATCCAAAAGTA 57.026 29.630 0.00 0.00 0.00 2.24
5025 5454 3.429141 CTGCTGGAGCTGCAACCG 61.429 66.667 9.92 0.00 42.66 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
317 318 9.770097 TCACTACATTATTTTGGCAAATTTGAA 57.230 25.926 22.31 7.39 34.29 2.69
984 986 3.451793 CGACCCGGACATTCAATGA 57.548 52.632 0.73 0.00 0.00 2.57
1004 1006 3.365265 GTTGGTTGGGCCTCAGCG 61.365 66.667 4.53 0.00 41.24 5.18
1005 1007 3.365265 CGTTGGTTGGGCCTCAGC 61.365 66.667 4.53 0.54 38.35 4.26
1006 1008 3.365265 GCGTTGGTTGGGCCTCAG 61.365 66.667 4.53 0.00 38.35 3.35
1022 1024 3.491652 GGAGGAAGAAGCGTGCGC 61.492 66.667 8.67 8.67 42.33 6.09
1023 1025 1.807573 GAGGAGGAAGAAGCGTGCG 60.808 63.158 0.00 0.00 0.00 5.34
1024 1026 1.448717 GGAGGAGGAAGAAGCGTGC 60.449 63.158 0.00 0.00 0.00 5.34
1025 1027 1.219393 GGGAGGAGGAAGAAGCGTG 59.781 63.158 0.00 0.00 0.00 5.34
1026 1028 0.973496 GAGGGAGGAGGAAGAAGCGT 60.973 60.000 0.00 0.00 0.00 5.07
1027 1029 1.681486 GGAGGGAGGAGGAAGAAGCG 61.681 65.000 0.00 0.00 0.00 4.68
1028 1030 1.341913 GGGAGGGAGGAGGAAGAAGC 61.342 65.000 0.00 0.00 0.00 3.86
1029 1031 1.045911 CGGGAGGGAGGAGGAAGAAG 61.046 65.000 0.00 0.00 0.00 2.85
1030 1032 1.001760 CGGGAGGGAGGAGGAAGAA 59.998 63.158 0.00 0.00 0.00 2.52
1031 1033 1.515754 TTCGGGAGGGAGGAGGAAGA 61.516 60.000 0.00 0.00 0.00 2.87
1032 1034 1.001760 TTCGGGAGGGAGGAGGAAG 59.998 63.158 0.00 0.00 0.00 3.46
1033 1035 1.001760 CTTCGGGAGGGAGGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
1034 1036 2.690452 CTTCGGGAGGGAGGAGGA 59.310 66.667 0.00 0.00 0.00 3.71
1035 1037 3.157949 GCTTCGGGAGGGAGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
1036 1038 3.532155 CGCTTCGGGAGGGAGGAG 61.532 72.222 0.00 0.00 40.59 3.69
1037 1039 3.595428 TTCGCTTCGGGAGGGAGGA 62.595 63.158 3.07 0.00 46.53 3.71
1038 1040 3.075005 TTCGCTTCGGGAGGGAGG 61.075 66.667 3.07 0.00 46.53 4.30
1039 1041 2.496817 CTTCGCTTCGGGAGGGAG 59.503 66.667 3.07 0.00 46.53 4.30
1040 1042 3.771160 GCTTCGCTTCGGGAGGGA 61.771 66.667 0.00 0.00 44.68 4.20
1042 1044 2.907897 ATTCGCTTCGCTTCGGGAGG 62.908 60.000 0.00 0.00 0.00 4.30
1043 1045 1.483424 GATTCGCTTCGCTTCGGGAG 61.483 60.000 0.00 0.00 0.00 4.30
1044 1046 1.518572 GATTCGCTTCGCTTCGGGA 60.519 57.895 0.00 0.00 0.00 5.14
1045 1047 2.860628 CGATTCGCTTCGCTTCGGG 61.861 63.158 0.00 0.00 31.33 5.14
1046 1048 1.410737 TTCGATTCGCTTCGCTTCGG 61.411 55.000 0.00 0.00 38.97 4.30
1047 1049 0.313547 GTTCGATTCGCTTCGCTTCG 60.314 55.000 0.00 4.94 38.97 3.79
1048 1050 0.025128 GGTTCGATTCGCTTCGCTTC 59.975 55.000 0.00 0.00 38.97 3.86
1049 1051 0.669318 TGGTTCGATTCGCTTCGCTT 60.669 50.000 0.00 0.00 38.97 4.68
1050 1052 1.080093 TGGTTCGATTCGCTTCGCT 60.080 52.632 0.00 0.00 38.97 4.93
1051 1053 1.058903 GTGGTTCGATTCGCTTCGC 59.941 57.895 0.00 0.00 38.97 4.70
1052 1054 1.340465 CGTGGTTCGATTCGCTTCG 59.660 57.895 0.00 1.00 42.86 3.79
1053 1055 1.058903 GCGTGGTTCGATTCGCTTC 59.941 57.895 13.67 0.00 44.28 3.86
1054 1056 2.726691 CGCGTGGTTCGATTCGCTT 61.727 57.895 16.89 0.00 45.25 4.68
1055 1057 3.179265 CGCGTGGTTCGATTCGCT 61.179 61.111 16.89 0.00 45.25 4.93
1056 1058 3.007070 AACGCGTGGTTCGATTCGC 62.007 57.895 14.98 11.81 44.23 4.70
1057 1059 1.225368 CAACGCGTGGTTCGATTCG 60.225 57.895 14.98 0.00 42.86 3.34
1058 1060 1.509162 GCAACGCGTGGTTCGATTC 60.509 57.895 14.98 0.00 42.86 2.52
1059 1061 2.554272 GCAACGCGTGGTTCGATT 59.446 55.556 14.98 0.00 42.86 3.34
1072 1074 4.415332 TCTCGACTCCGCCGCAAC 62.415 66.667 0.00 0.00 35.37 4.17
1073 1075 4.116328 CTCTCGACTCCGCCGCAA 62.116 66.667 0.00 0.00 35.37 4.85
1076 1078 2.697761 TTTCCTCTCGACTCCGCCG 61.698 63.158 0.00 0.00 35.37 6.46
1077 1079 1.153804 GTTTCCTCTCGACTCCGCC 60.154 63.158 0.00 0.00 35.37 6.13
1078 1080 1.153804 GGTTTCCTCTCGACTCCGC 60.154 63.158 0.00 0.00 35.37 5.54
1079 1081 0.966370 AGGGTTTCCTCTCGACTCCG 60.966 60.000 0.00 0.00 39.80 4.63
1080 1082 2.025898 CTAGGGTTTCCTCTCGACTCC 58.974 57.143 0.00 0.00 43.66 3.85
1081 1083 1.406180 GCTAGGGTTTCCTCTCGACTC 59.594 57.143 0.00 0.00 43.66 3.36
1082 1084 1.476477 GCTAGGGTTTCCTCTCGACT 58.524 55.000 0.00 0.00 43.66 4.18
1083 1085 0.460722 GGCTAGGGTTTCCTCTCGAC 59.539 60.000 0.00 0.00 43.66 4.20
1084 1086 0.686769 GGGCTAGGGTTTCCTCTCGA 60.687 60.000 0.00 0.00 43.66 4.04
1085 1087 1.823976 GGGCTAGGGTTTCCTCTCG 59.176 63.158 0.00 0.00 43.66 4.04
1090 1092 4.501285 GGGCGGGCTAGGGTTTCC 62.501 72.222 0.26 0.00 0.00 3.13
1294 1306 2.770475 GAGAAGGGAGGGGAGGGC 60.770 72.222 0.00 0.00 0.00 5.19
1371 1390 1.431243 ACCCCCACTGGAGCAAAATAA 59.569 47.619 0.00 0.00 35.39 1.40
1389 1408 1.339151 CCAACCTAGCTTCAGTCCACC 60.339 57.143 0.00 0.00 0.00 4.61
1393 1412 1.002544 AGCACCAACCTAGCTTCAGTC 59.997 52.381 0.00 0.00 34.37 3.51
1440 1459 2.100879 CTCCCTACCCAGCGCATACC 62.101 65.000 11.47 0.00 0.00 2.73
1445 1464 2.501610 CTTCTCCCTACCCAGCGC 59.498 66.667 0.00 0.00 0.00 5.92
1451 1470 0.824759 ACGATGTGCTTCTCCCTACC 59.175 55.000 0.00 0.00 0.00 3.18
1453 1472 0.824109 CCACGATGTGCTTCTCCCTA 59.176 55.000 0.00 0.00 31.34 3.53
1464 1483 2.504032 CCGGGTATGCCACGATGT 59.496 61.111 11.25 0.00 36.17 3.06
1471 1494 0.470766 TGTACATTCCCGGGTATGCC 59.529 55.000 33.21 25.14 0.00 4.40
1477 1500 3.660865 GCTTATAGTGTACATTCCCGGG 58.339 50.000 16.85 16.85 0.00 5.73
1479 1502 2.729882 GCGCTTATAGTGTACATTCCCG 59.270 50.000 0.00 0.00 0.00 5.14
1494 1517 2.208132 TTCTCCAAATTGGGCGCTTA 57.792 45.000 12.67 0.00 38.32 3.09
1501 1524 3.193267 TCCTGCGAAATTCTCCAAATTGG 59.807 43.478 5.48 5.48 39.43 3.16
1597 1684 2.500229 GTCTCGTCTGGGATCCTAGAG 58.500 57.143 26.87 19.62 0.00 2.43
1598 1685 1.202663 CGTCTCGTCTGGGATCCTAGA 60.203 57.143 23.04 23.04 0.00 2.43
1599 1686 1.231221 CGTCTCGTCTGGGATCCTAG 58.769 60.000 18.80 18.80 0.00 3.02
1600 1687 0.818445 GCGTCTCGTCTGGGATCCTA 60.818 60.000 12.58 4.23 0.00 2.94
1604 1691 1.077357 AGAGCGTCTCGTCTGGGAT 60.077 57.895 1.98 0.00 35.36 3.85
1605 1692 1.745864 GAGAGCGTCTCGTCTGGGA 60.746 63.158 1.98 0.00 33.35 4.37
1606 1693 2.795297 GAGAGCGTCTCGTCTGGG 59.205 66.667 1.98 0.00 33.35 4.45
1619 1717 4.635765 GGTCTCATCTCGGATCATAGAGAG 59.364 50.000 16.28 13.96 45.36 3.20
1626 1724 1.309950 GACGGTCTCATCTCGGATCA 58.690 55.000 0.00 0.00 0.00 2.92
1648 1746 0.457509 CTGTAGCGCAGGTGAGTGAG 60.458 60.000 11.47 0.00 41.42 3.51
1692 1790 1.194772 CTTCGTTCAGCTTTCGGGTTC 59.805 52.381 0.00 0.00 0.00 3.62
1703 1801 2.232452 ACTCTGGTCCATCTTCGTTCAG 59.768 50.000 0.00 0.00 0.00 3.02
1709 1807 5.104735 AGGTCATAAACTCTGGTCCATCTTC 60.105 44.000 0.00 0.00 0.00 2.87
1717 1815 6.021030 TGTAAGGTAGGTCATAAACTCTGGT 58.979 40.000 0.00 0.00 0.00 4.00
1718 1816 6.338937 GTGTAAGGTAGGTCATAAACTCTGG 58.661 44.000 0.00 0.00 0.00 3.86
1742 1840 1.142748 GGCTCCTCCAGACACATCG 59.857 63.158 0.00 0.00 34.01 3.84
1819 1917 3.452474 CAACGCAACCAAAATCCAGAAA 58.548 40.909 0.00 0.00 0.00 2.52
1831 1929 2.538037 GACAAATCAAACCAACGCAACC 59.462 45.455 0.00 0.00 0.00 3.77
1832 1930 2.215363 CGACAAATCAAACCAACGCAAC 59.785 45.455 0.00 0.00 0.00 4.17
1836 1934 4.404507 AGATCGACAAATCAAACCAACG 57.595 40.909 0.00 0.00 0.00 4.10
1898 1997 8.088981 GGTGGATTATGGTATGAACTAGTACAG 58.911 40.741 0.00 0.00 0.00 2.74
1998 2097 1.223487 GAGCATTCGGGCCCTTGTA 59.777 57.895 22.43 1.88 0.00 2.41
2008 2107 2.283617 CAGAGAAATGTCCGAGCATTCG 59.716 50.000 5.19 0.00 46.29 3.34
2017 2116 8.129211 CGGGTTATTATTTTCAGAGAAATGTCC 58.871 37.037 0.00 0.00 31.96 4.02
2018 2117 8.889717 TCGGGTTATTATTTTCAGAGAAATGTC 58.110 33.333 0.00 0.00 31.96 3.06
2038 2137 3.933861 AGAATTTGGATAGCTCGGGTT 57.066 42.857 0.00 0.00 0.00 4.11
2039 2138 5.367945 TTTAGAATTTGGATAGCTCGGGT 57.632 39.130 0.00 0.00 0.00 5.28
2040 2139 5.765182 ACATTTAGAATTTGGATAGCTCGGG 59.235 40.000 0.00 0.00 0.00 5.14
2041 2140 6.867662 ACATTTAGAATTTGGATAGCTCGG 57.132 37.500 0.00 0.00 0.00 4.63
2042 2141 8.491152 CAGTACATTTAGAATTTGGATAGCTCG 58.509 37.037 0.00 0.00 0.00 5.03
2043 2142 9.331282 ACAGTACATTTAGAATTTGGATAGCTC 57.669 33.333 0.00 0.00 0.00 4.09
2044 2143 9.113838 CACAGTACATTTAGAATTTGGATAGCT 57.886 33.333 0.00 0.00 0.00 3.32
2045 2144 9.109393 TCACAGTACATTTAGAATTTGGATAGC 57.891 33.333 0.00 0.00 0.00 2.97
2047 2146 9.613428 CCTCACAGTACATTTAGAATTTGGATA 57.387 33.333 0.00 0.00 0.00 2.59
2048 2147 8.109634 ACCTCACAGTACATTTAGAATTTGGAT 58.890 33.333 0.00 0.00 0.00 3.41
2049 2148 7.458397 ACCTCACAGTACATTTAGAATTTGGA 58.542 34.615 0.00 0.00 0.00 3.53
2050 2149 7.687941 ACCTCACAGTACATTTAGAATTTGG 57.312 36.000 0.00 0.00 0.00 3.28
2051 2150 9.612620 GAAACCTCACAGTACATTTAGAATTTG 57.387 33.333 0.00 0.00 0.00 2.32
2052 2151 9.349713 TGAAACCTCACAGTACATTTAGAATTT 57.650 29.630 0.00 0.00 0.00 1.82
2053 2152 8.918202 TGAAACCTCACAGTACATTTAGAATT 57.082 30.769 0.00 0.00 0.00 2.17
2054 2153 8.157476 ACTGAAACCTCACAGTACATTTAGAAT 58.843 33.333 0.00 0.00 44.06 2.40
2055 2154 7.506114 ACTGAAACCTCACAGTACATTTAGAA 58.494 34.615 0.00 0.00 44.06 2.10
2056 2155 7.062749 ACTGAAACCTCACAGTACATTTAGA 57.937 36.000 0.00 0.00 44.06 2.10
2057 2156 7.657761 AGAACTGAAACCTCACAGTACATTTAG 59.342 37.037 0.00 0.00 44.94 1.85
2058 2157 7.441157 CAGAACTGAAACCTCACAGTACATTTA 59.559 37.037 0.00 0.00 44.94 1.40
2059 2158 6.260936 CAGAACTGAAACCTCACAGTACATTT 59.739 38.462 0.00 0.00 44.94 2.32
2060 2159 5.760253 CAGAACTGAAACCTCACAGTACATT 59.240 40.000 0.00 0.00 44.94 2.71
2061 2160 5.163301 ACAGAACTGAAACCTCACAGTACAT 60.163 40.000 8.87 0.00 44.94 2.29
2062 2161 4.161565 ACAGAACTGAAACCTCACAGTACA 59.838 41.667 8.87 0.00 44.94 2.90
2063 2162 4.508124 CACAGAACTGAAACCTCACAGTAC 59.492 45.833 8.87 0.00 44.94 2.73
2064 2163 4.161565 ACACAGAACTGAAACCTCACAGTA 59.838 41.667 8.87 0.00 44.94 2.74
2066 2165 3.535561 ACACAGAACTGAAACCTCACAG 58.464 45.455 8.87 0.00 39.65 3.66
2067 2166 3.627395 ACACAGAACTGAAACCTCACA 57.373 42.857 8.87 0.00 0.00 3.58
2068 2167 3.487544 GCAACACAGAACTGAAACCTCAC 60.488 47.826 8.87 0.00 0.00 3.51
2069 2168 2.682856 GCAACACAGAACTGAAACCTCA 59.317 45.455 8.87 0.00 0.00 3.86
2070 2169 2.033424 GGCAACACAGAACTGAAACCTC 59.967 50.000 8.87 0.00 0.00 3.85
2071 2170 2.024414 GGCAACACAGAACTGAAACCT 58.976 47.619 8.87 0.00 0.00 3.50
2072 2171 1.748493 TGGCAACACAGAACTGAAACC 59.252 47.619 8.87 3.69 46.17 3.27
2073 2172 2.682856 TCTGGCAACACAGAACTGAAAC 59.317 45.455 8.87 0.00 46.17 2.78
2074 2173 2.945008 CTCTGGCAACACAGAACTGAAA 59.055 45.455 8.87 0.00 46.05 2.69
2075 2174 2.092968 ACTCTGGCAACACAGAACTGAA 60.093 45.455 8.87 0.00 46.05 3.02
2076 2175 1.486310 ACTCTGGCAACACAGAACTGA 59.514 47.619 8.87 0.00 46.05 3.41
2077 2176 1.600957 CACTCTGGCAACACAGAACTG 59.399 52.381 0.00 0.00 46.05 3.16
2078 2177 1.210478 ACACTCTGGCAACACAGAACT 59.790 47.619 0.00 0.00 46.05 3.01
2079 2178 1.668419 ACACTCTGGCAACACAGAAC 58.332 50.000 0.00 0.00 46.05 3.01
2080 2179 3.466836 CTTACACTCTGGCAACACAGAA 58.533 45.455 0.00 0.00 46.05 3.02
2081 2180 2.224281 CCTTACACTCTGGCAACACAGA 60.224 50.000 0.00 0.00 46.17 3.41
2082 2181 2.146342 CCTTACACTCTGGCAACACAG 58.854 52.381 0.00 0.00 46.17 3.66
2083 2182 1.488812 ACCTTACACTCTGGCAACACA 59.511 47.619 0.00 0.00 46.17 3.72
2084 2183 2.143925 GACCTTACACTCTGGCAACAC 58.856 52.381 0.00 0.00 46.17 3.32
2086 2185 2.841442 AGACCTTACACTCTGGCAAC 57.159 50.000 0.00 0.00 0.00 4.17
2087 2186 3.118038 ACAAAGACCTTACACTCTGGCAA 60.118 43.478 0.00 0.00 0.00 4.52
2088 2187 2.438021 ACAAAGACCTTACACTCTGGCA 59.562 45.455 0.00 0.00 0.00 4.92
2089 2188 3.127425 ACAAAGACCTTACACTCTGGC 57.873 47.619 0.00 0.00 0.00 4.85
2090 2189 3.741344 CGAACAAAGACCTTACACTCTGG 59.259 47.826 0.00 0.00 0.00 3.86
2091 2190 4.369182 ACGAACAAAGACCTTACACTCTG 58.631 43.478 0.00 0.00 0.00 3.35
2092 2191 4.667519 ACGAACAAAGACCTTACACTCT 57.332 40.909 0.00 0.00 0.00 3.24
2093 2192 4.807304 TCAACGAACAAAGACCTTACACTC 59.193 41.667 0.00 0.00 0.00 3.51
2094 2193 4.761975 TCAACGAACAAAGACCTTACACT 58.238 39.130 0.00 0.00 0.00 3.55
2095 2194 5.473796 TTCAACGAACAAAGACCTTACAC 57.526 39.130 0.00 0.00 0.00 2.90
2096 2195 7.972832 ATATTCAACGAACAAAGACCTTACA 57.027 32.000 0.00 0.00 0.00 2.41
2119 2218 7.201644 GGCTTAACATCTAATGCGTGCATATAT 60.202 37.037 7.91 0.00 35.31 0.86
2120 2219 6.092122 GGCTTAACATCTAATGCGTGCATATA 59.908 38.462 7.91 2.78 35.31 0.86
2125 2224 2.599848 CGGCTTAACATCTAATGCGTGC 60.600 50.000 0.00 0.00 0.00 5.34
2132 2231 9.713713 TGCATTTATATACGGCTTAACATCTAA 57.286 29.630 0.00 0.00 0.00 2.10
2135 2234 7.333423 TCCTGCATTTATATACGGCTTAACATC 59.667 37.037 0.00 0.00 0.00 3.06
2143 2242 7.980099 ACTAACTATCCTGCATTTATATACGGC 59.020 37.037 0.00 0.00 0.00 5.68
2146 2245 9.653287 TGCACTAACTATCCTGCATTTATATAC 57.347 33.333 0.00 0.00 34.73 1.47
2166 2265 5.474825 TGTCATGTCGATTAGTTTGCACTA 58.525 37.500 0.00 0.00 34.06 2.74
2178 2277 6.040955 ACAGTGAGGTATATTGTCATGTCGAT 59.959 38.462 0.00 0.00 0.00 3.59
2182 2281 6.115446 CCAACAGTGAGGTATATTGTCATGT 58.885 40.000 0.00 0.00 0.00 3.21
2195 2302 0.535780 TGCAAGAGCCAACAGTGAGG 60.536 55.000 0.00 0.00 41.13 3.86
2200 2307 3.989817 GGTTAAATTGCAAGAGCCAACAG 59.010 43.478 4.94 0.00 41.13 3.16
2204 2311 3.495331 TCAGGTTAAATTGCAAGAGCCA 58.505 40.909 4.94 0.00 41.13 4.75
2206 2313 5.064441 ACATCAGGTTAAATTGCAAGAGC 57.936 39.130 4.94 0.77 42.57 4.09
2216 2323 7.174253 GGAGTACAACATCAACATCAGGTTAAA 59.826 37.037 0.00 0.00 37.72 1.52
2223 2330 6.649141 GTGTTAGGAGTACAACATCAACATCA 59.351 38.462 0.00 0.00 37.04 3.07
2224 2331 6.874134 AGTGTTAGGAGTACAACATCAACATC 59.126 38.462 0.00 0.00 37.04 3.06
2225 2332 6.769512 AGTGTTAGGAGTACAACATCAACAT 58.230 36.000 0.00 0.00 37.04 2.71
2226 2333 6.169557 AGTGTTAGGAGTACAACATCAACA 57.830 37.500 0.00 0.00 37.04 3.33
2227 2334 8.251721 AGATAGTGTTAGGAGTACAACATCAAC 58.748 37.037 0.00 0.00 37.04 3.18
2228 2335 8.251026 CAGATAGTGTTAGGAGTACAACATCAA 58.749 37.037 0.00 0.00 37.04 2.57
2298 2407 9.729281 GTTCAGTCCTCTAGCTAATACTAGTAT 57.271 37.037 9.71 9.71 40.50 2.12
2307 2416 4.610333 TCATGGTTCAGTCCTCTAGCTAA 58.390 43.478 0.00 0.00 0.00 3.09
2376 2553 8.862325 ACATGAAATTCACCATAAGTTCACTA 57.138 30.769 0.00 0.00 43.66 2.74
2384 2561 6.385843 CCAACGAACATGAAATTCACCATAA 58.614 36.000 0.00 0.00 0.00 1.90
2536 2713 7.458397 TCAATTACTTACCCACTGTCTTCAAT 58.542 34.615 0.00 0.00 0.00 2.57
2546 2723 8.331730 AGTTGTATGTTCAATTACTTACCCAC 57.668 34.615 0.00 0.00 31.28 4.61
2565 2742 8.971321 CAAGAAAGCTAGTACGTAAAAGTTGTA 58.029 33.333 0.00 0.00 0.00 2.41
3040 3421 7.867921 TGATACACCCACCATTAATAAAGAGT 58.132 34.615 0.00 0.00 0.00 3.24
3041 3422 8.924511 ATGATACACCCACCATTAATAAAGAG 57.075 34.615 0.00 0.00 0.00 2.85
3042 3423 9.130661 CAATGATACACCCACCATTAATAAAGA 57.869 33.333 0.00 0.00 0.00 2.52
3043 3424 8.912988 ACAATGATACACCCACCATTAATAAAG 58.087 33.333 0.00 0.00 0.00 1.85
3044 3425 8.830915 ACAATGATACACCCACCATTAATAAA 57.169 30.769 0.00 0.00 0.00 1.40
3045 3426 9.922477 TTACAATGATACACCCACCATTAATAA 57.078 29.630 0.00 0.00 0.00 1.40
3047 3428 8.691797 GTTTACAATGATACACCCACCATTAAT 58.308 33.333 0.00 0.00 0.00 1.40
3070 3454 8.575589 TGCATCAGAAACATTACATACTTGTTT 58.424 29.630 0.29 0.29 44.02 2.83
3071 3455 8.109705 TGCATCAGAAACATTACATACTTGTT 57.890 30.769 0.00 0.00 37.28 2.83
3246 3632 6.332635 AGAATTGTGAAGGTATGATATGGGGA 59.667 38.462 0.00 0.00 0.00 4.81
3266 3652 4.597004 AGATGCAAGGATGTCACAGAATT 58.403 39.130 0.00 0.00 0.00 2.17
3294 3680 6.322201 CAGATAAATATGGTGAGTTTTGCCCT 59.678 38.462 0.00 0.00 0.00 5.19
3328 3718 1.243902 TTGGAGCGATGTTCCCAAAC 58.756 50.000 0.00 0.00 35.91 2.93
3463 3853 7.920682 GGAAATTGAGCTCAAAACTAACTGAAA 59.079 33.333 31.55 5.77 39.55 2.69
3484 3874 1.888512 AGCGAATGCACAACAGGAAAT 59.111 42.857 0.00 0.00 46.23 2.17
3534 3924 2.151049 CTTTTGCTGCTCCACTGCCC 62.151 60.000 0.00 0.00 42.24 5.36
3535 3925 1.288127 CTTTTGCTGCTCCACTGCC 59.712 57.895 0.00 0.00 42.24 4.85
3600 3990 0.840288 TGGACCTGCACCAGTACCAT 60.840 55.000 0.00 0.00 32.94 3.55
3613 4003 5.197451 TGTTCTACACAAACATTTGGACCT 58.803 37.500 9.09 0.00 42.34 3.85
3819 4229 5.048224 CCACATTCATGAAAGGGATCATAGC 60.048 44.000 14.37 0.00 37.96 2.97
3861 4273 2.551032 GGTAAAGTAAGCACGGCAAGTT 59.449 45.455 0.00 0.00 0.00 2.66
3929 4341 4.461431 ACATCAAAATCTGCAAGCATCTGA 59.539 37.500 0.00 0.00 0.00 3.27
3957 4369 0.178981 ACACATGCCCAGTCAAAGCT 60.179 50.000 0.00 0.00 0.00 3.74
4066 4479 2.250031 TCGGTAACCAGCTAACCTCAA 58.750 47.619 0.00 0.00 0.00 3.02
4101 4514 9.931698 TGAAGGGAGACTATTTGATTACTACTA 57.068 33.333 0.00 0.00 0.00 1.82
4102 4515 8.840200 TGAAGGGAGACTATTTGATTACTACT 57.160 34.615 0.00 0.00 0.00 2.57
4105 4518 9.981460 AAATTGAAGGGAGACTATTTGATTACT 57.019 29.630 0.00 0.00 0.00 2.24
4108 4521 8.037166 GCAAAATTGAAGGGAGACTATTTGATT 58.963 33.333 0.00 0.00 0.00 2.57
4109 4522 7.398332 AGCAAAATTGAAGGGAGACTATTTGAT 59.602 33.333 0.00 0.00 0.00 2.57
4110 4523 6.721208 AGCAAAATTGAAGGGAGACTATTTGA 59.279 34.615 0.00 0.00 0.00 2.69
4111 4524 6.810182 CAGCAAAATTGAAGGGAGACTATTTG 59.190 38.462 0.00 0.00 0.00 2.32
4112 4525 6.494835 ACAGCAAAATTGAAGGGAGACTATTT 59.505 34.615 0.00 0.00 0.00 1.40
4113 4526 6.012745 ACAGCAAAATTGAAGGGAGACTATT 58.987 36.000 0.00 0.00 0.00 1.73
4114 4527 5.416952 CACAGCAAAATTGAAGGGAGACTAT 59.583 40.000 0.00 0.00 0.00 2.12
4115 4528 4.761739 CACAGCAAAATTGAAGGGAGACTA 59.238 41.667 0.00 0.00 0.00 2.59
4116 4529 3.571401 CACAGCAAAATTGAAGGGAGACT 59.429 43.478 0.00 0.00 0.00 3.24
4117 4530 3.305608 CCACAGCAAAATTGAAGGGAGAC 60.306 47.826 0.00 0.00 0.00 3.36
4118 4531 2.892852 CCACAGCAAAATTGAAGGGAGA 59.107 45.455 0.00 0.00 0.00 3.71
4119 4532 2.892852 TCCACAGCAAAATTGAAGGGAG 59.107 45.455 0.00 0.00 0.00 4.30
4120 4533 2.956132 TCCACAGCAAAATTGAAGGGA 58.044 42.857 0.00 0.00 0.00 4.20
4121 4534 3.070015 AGTTCCACAGCAAAATTGAAGGG 59.930 43.478 0.00 0.00 0.00 3.95
4122 4535 4.326504 AGTTCCACAGCAAAATTGAAGG 57.673 40.909 0.00 0.00 0.00 3.46
4123 4536 6.016777 AGTCTAGTTCCACAGCAAAATTGAAG 60.017 38.462 0.00 0.00 0.00 3.02
4124 4537 5.827797 AGTCTAGTTCCACAGCAAAATTGAA 59.172 36.000 0.00 0.00 0.00 2.69
4125 4538 5.376625 AGTCTAGTTCCACAGCAAAATTGA 58.623 37.500 0.00 0.00 0.00 2.57
4126 4539 5.695851 AGTCTAGTTCCACAGCAAAATTG 57.304 39.130 0.00 0.00 0.00 2.32
4127 4540 5.412904 GCTAGTCTAGTTCCACAGCAAAATT 59.587 40.000 8.68 0.00 0.00 1.82
4128 4541 4.938226 GCTAGTCTAGTTCCACAGCAAAAT 59.062 41.667 8.68 0.00 0.00 1.82
4129 4542 4.040461 AGCTAGTCTAGTTCCACAGCAAAA 59.960 41.667 8.68 0.00 0.00 2.44
4130 4543 3.578716 AGCTAGTCTAGTTCCACAGCAAA 59.421 43.478 8.68 0.00 0.00 3.68
4131 4544 3.165875 AGCTAGTCTAGTTCCACAGCAA 58.834 45.455 8.68 0.00 0.00 3.91
4132 4545 2.808919 AGCTAGTCTAGTTCCACAGCA 58.191 47.619 8.68 0.00 0.00 4.41
4133 4546 3.429684 GGAAGCTAGTCTAGTTCCACAGC 60.430 52.174 23.04 7.35 36.67 4.40
4134 4547 3.131400 GGGAAGCTAGTCTAGTTCCACAG 59.869 52.174 26.03 2.05 37.54 3.66
4135 4548 3.097614 GGGAAGCTAGTCTAGTTCCACA 58.902 50.000 26.03 0.00 37.54 4.17
4136 4549 3.131400 CAGGGAAGCTAGTCTAGTTCCAC 59.869 52.174 26.03 19.79 37.54 4.02
4137 4550 3.366396 CAGGGAAGCTAGTCTAGTTCCA 58.634 50.000 26.03 0.00 37.54 3.53
4138 4551 2.101750 GCAGGGAAGCTAGTCTAGTTCC 59.898 54.545 21.40 21.40 36.30 3.62
4139 4552 3.028130 AGCAGGGAAGCTAGTCTAGTTC 58.972 50.000 8.68 10.11 44.50 3.01
4140 4553 3.108847 AGCAGGGAAGCTAGTCTAGTT 57.891 47.619 8.68 0.00 44.50 2.24
4141 4554 2.763448 CAAGCAGGGAAGCTAGTCTAGT 59.237 50.000 8.68 0.00 45.89 2.57
4145 4558 2.998316 ATCAAGCAGGGAAGCTAGTC 57.002 50.000 0.00 0.00 45.89 2.59
4155 4568 8.461222 TCTGATTGTTTGTATAAATCAAGCAGG 58.539 33.333 25.70 16.61 42.79 4.85
4171 4584 9.635520 CTATTTTGCTCATTCTTCTGATTGTTT 57.364 29.630 0.00 0.00 0.00 2.83
4180 4593 4.357996 GGCAGCTATTTTGCTCATTCTTC 58.642 43.478 0.00 0.00 41.98 2.87
4183 4596 2.428171 TGGGCAGCTATTTTGCTCATTC 59.572 45.455 0.00 0.00 46.51 2.67
4196 4609 1.210204 TCCTGGAAGAATGGGCAGCT 61.210 55.000 0.00 0.00 34.07 4.24
4224 4637 9.228949 GCATCAATCCAAAGATCTAGATTATGT 57.771 33.333 6.70 0.00 0.00 2.29
4226 4639 9.228949 GTGCATCAATCCAAAGATCTAGATTAT 57.771 33.333 6.70 0.00 0.00 1.28
4231 4644 5.128205 TGGTGCATCAATCCAAAGATCTAG 58.872 41.667 0.00 0.00 0.00 2.43
4232 4645 5.114764 TGGTGCATCAATCCAAAGATCTA 57.885 39.130 0.00 0.00 0.00 1.98
4238 4651 3.387374 ACAGTTTGGTGCATCAATCCAAA 59.613 39.130 14.32 13.53 45.19 3.28
4241 4654 3.665745 AACAGTTTGGTGCATCAATCC 57.334 42.857 14.32 7.49 0.00 3.01
4271 4684 8.972458 AACAACCAGTTATTTAAAATTGCCTT 57.028 26.923 0.00 0.00 39.09 4.35
4291 4704 8.182227 GCCTGTTCTGGTAGATAATTTAACAAC 58.818 37.037 0.00 0.00 0.00 3.32
4305 4718 1.340088 TTACCGTGCCTGTTCTGGTA 58.660 50.000 0.00 0.00 34.18 3.25
4309 4722 3.074412 CTGAATTTACCGTGCCTGTTCT 58.926 45.455 0.00 0.00 0.00 3.01
4335 4748 9.835389 TTTTCTTTTCCAAATGATGTTCAGATT 57.165 25.926 0.00 0.00 0.00 2.40
4336 4749 9.835389 TTTTTCTTTTCCAAATGATGTTCAGAT 57.165 25.926 0.00 0.00 0.00 2.90
4337 4750 9.316730 CTTTTTCTTTTCCAAATGATGTTCAGA 57.683 29.630 0.00 0.00 0.00 3.27
4338 4751 9.316730 TCTTTTTCTTTTCCAAATGATGTTCAG 57.683 29.630 0.00 0.00 0.00 3.02
4339 4752 9.664332 TTCTTTTTCTTTTCCAAATGATGTTCA 57.336 25.926 0.00 0.00 0.00 3.18
4387 4813 5.932303 TGGTTGCAGTTATCTCACTCTAAAC 59.068 40.000 0.00 0.00 0.00 2.01
4392 4818 4.319177 AGTTGGTTGCAGTTATCTCACTC 58.681 43.478 0.00 0.00 0.00 3.51
4397 4823 7.944729 ATAAATGAGTTGGTTGCAGTTATCT 57.055 32.000 0.00 0.00 29.92 1.98
4483 4909 6.072008 TGCAAGACTAATACAGTACGGTGTAA 60.072 38.462 9.06 0.00 37.72 2.41
4490 4916 5.063060 CCGGTTTGCAAGACTAATACAGTAC 59.937 44.000 0.00 0.00 37.72 2.73
4491 4917 5.047164 TCCGGTTTGCAAGACTAATACAGTA 60.047 40.000 0.00 0.00 37.72 2.74
4498 4924 1.068895 TCGTCCGGTTTGCAAGACTAA 59.931 47.619 12.93 1.33 0.00 2.24
4501 4927 1.155424 TGTCGTCCGGTTTGCAAGAC 61.155 55.000 0.00 2.73 0.00 3.01
4508 4934 2.549329 GTGGTTAATTGTCGTCCGGTTT 59.451 45.455 0.00 0.00 0.00 3.27
4512 4938 6.422701 ACATATATGTGGTTAATTGTCGTCCG 59.577 38.462 17.60 0.00 40.03 4.79
4513 4939 7.724305 ACATATATGTGGTTAATTGTCGTCC 57.276 36.000 17.60 0.00 40.03 4.79
4517 4943 9.825972 GCATGTACATATATGTGGTTAATTGTC 57.174 33.333 25.48 8.21 41.89 3.18
4518 4944 8.792633 GGCATGTACATATATGTGGTTAATTGT 58.207 33.333 25.48 1.41 41.89 2.71
4526 4952 6.466812 TCTCAAGGCATGTACATATATGTGG 58.533 40.000 25.48 14.13 41.89 4.17
4529 4955 8.782339 TCATTCTCAAGGCATGTACATATATG 57.218 34.615 8.32 11.29 0.00 1.78
4534 4960 4.885907 CCTTCATTCTCAAGGCATGTACAT 59.114 41.667 1.41 1.41 34.21 2.29
4535 4961 4.263462 ACCTTCATTCTCAAGGCATGTACA 60.263 41.667 0.00 0.00 43.96 2.90
4536 4962 4.265073 ACCTTCATTCTCAAGGCATGTAC 58.735 43.478 0.00 0.00 43.96 2.90
4537 4963 4.574674 ACCTTCATTCTCAAGGCATGTA 57.425 40.909 0.00 0.00 43.96 2.29
4539 4965 6.461110 AATTACCTTCATTCTCAAGGCATG 57.539 37.500 0.00 0.00 43.96 4.06
4540 4966 8.593945 TTTAATTACCTTCATTCTCAAGGCAT 57.406 30.769 0.00 0.00 43.96 4.40
4541 4967 7.362920 GCTTTAATTACCTTCATTCTCAAGGCA 60.363 37.037 0.00 0.00 43.96 4.75
4542 4968 6.975197 GCTTTAATTACCTTCATTCTCAAGGC 59.025 38.462 0.00 0.00 43.96 4.35
4543 4969 8.055279 TGCTTTAATTACCTTCATTCTCAAGG 57.945 34.615 0.00 0.00 45.41 3.61
4544 4970 8.950210 TCTGCTTTAATTACCTTCATTCTCAAG 58.050 33.333 0.00 0.00 0.00 3.02
4545 4971 8.862325 TCTGCTTTAATTACCTTCATTCTCAA 57.138 30.769 0.00 0.00 0.00 3.02
4546 4972 8.862325 TTCTGCTTTAATTACCTTCATTCTCA 57.138 30.769 0.00 0.00 0.00 3.27
4556 4982 6.036470 GCACTGGATTTCTGCTTTAATTACC 58.964 40.000 0.00 0.00 0.00 2.85
4598 5024 9.405587 CGTACCTTTTTCATGTATCACAAAATT 57.594 29.630 0.00 0.00 0.00 1.82
4604 5030 7.585286 TGTACGTACCTTTTTCATGTATCAC 57.415 36.000 22.43 0.00 0.00 3.06
4607 5033 9.101655 GGTTATGTACGTACCTTTTTCATGTAT 57.898 33.333 22.43 7.50 0.00 2.29
4608 5034 8.093307 TGGTTATGTACGTACCTTTTTCATGTA 58.907 33.333 22.43 0.00 33.05 2.29
4610 5036 7.367159 TGGTTATGTACGTACCTTTTTCATG 57.633 36.000 22.43 0.00 33.05 3.07
4611 5037 7.982761 TTGGTTATGTACGTACCTTTTTCAT 57.017 32.000 22.43 10.08 33.05 2.57
4612 5038 7.982761 ATTGGTTATGTACGTACCTTTTTCA 57.017 32.000 22.43 11.03 33.05 2.69
4632 5058 8.299570 GGCTTCTGTTGGTCATATTATTATTGG 58.700 37.037 0.00 0.00 0.00 3.16
4634 5060 8.995027 TGGCTTCTGTTGGTCATATTATTATT 57.005 30.769 0.00 0.00 0.00 1.40
4636 5062 7.998383 ACATGGCTTCTGTTGGTCATATTATTA 59.002 33.333 0.00 0.00 0.00 0.98
4637 5063 6.835488 ACATGGCTTCTGTTGGTCATATTATT 59.165 34.615 0.00 0.00 0.00 1.40
4639 5065 5.754782 ACATGGCTTCTGTTGGTCATATTA 58.245 37.500 0.00 0.00 0.00 0.98
4640 5066 4.603131 ACATGGCTTCTGTTGGTCATATT 58.397 39.130 0.00 0.00 0.00 1.28
4641 5067 4.240881 ACATGGCTTCTGTTGGTCATAT 57.759 40.909 0.00 0.00 0.00 1.78
4642 5068 3.719268 ACATGGCTTCTGTTGGTCATA 57.281 42.857 0.00 0.00 0.00 2.15
4643 5069 2.592102 ACATGGCTTCTGTTGGTCAT 57.408 45.000 0.00 0.00 0.00 3.06
4644 5070 2.105649 TGTACATGGCTTCTGTTGGTCA 59.894 45.455 0.00 0.00 0.00 4.02
4645 5071 2.778299 TGTACATGGCTTCTGTTGGTC 58.222 47.619 0.00 0.00 0.00 4.02
4646 5072 2.949177 TGTACATGGCTTCTGTTGGT 57.051 45.000 0.00 0.00 0.00 3.67
4647 5073 5.677091 GCTTTATGTACATGGCTTCTGTTGG 60.677 44.000 18.81 0.00 0.00 3.77
4648 5074 5.124457 AGCTTTATGTACATGGCTTCTGTTG 59.876 40.000 18.81 0.00 0.00 3.33
4661 5087 7.806487 GGTTGGTTTCTGTAAAGCTTTATGTAC 59.194 37.037 21.28 11.98 42.36 2.90
4664 5090 6.744112 TGGTTGGTTTCTGTAAAGCTTTATG 58.256 36.000 21.28 16.46 42.36 1.90
4665 5091 6.015434 CCTGGTTGGTTTCTGTAAAGCTTTAT 60.015 38.462 21.28 0.00 42.36 1.40
4666 5092 5.300792 CCTGGTTGGTTTCTGTAAAGCTTTA 59.699 40.000 14.96 14.96 42.36 1.85
4667 5093 4.099419 CCTGGTTGGTTTCTGTAAAGCTTT 59.901 41.667 17.30 17.30 42.36 3.51
4670 5096 3.219281 TCCTGGTTGGTTTCTGTAAAGC 58.781 45.455 0.00 0.00 42.24 3.51
4678 5104 5.538849 TTTGGTAATTCCTGGTTGGTTTC 57.461 39.130 0.00 0.00 37.07 2.78
4721 5147 8.182227 CCCAAGTAATTTTTCTTTCTACCGATC 58.818 37.037 0.00 0.00 0.00 3.69
4722 5148 7.122204 CCCCAAGTAATTTTTCTTTCTACCGAT 59.878 37.037 0.00 0.00 0.00 4.18
4723 5149 6.431852 CCCCAAGTAATTTTTCTTTCTACCGA 59.568 38.462 0.00 0.00 0.00 4.69
4724 5150 6.431852 TCCCCAAGTAATTTTTCTTTCTACCG 59.568 38.462 0.00 0.00 0.00 4.02
4725 5151 7.770366 TCCCCAAGTAATTTTTCTTTCTACC 57.230 36.000 0.00 0.00 0.00 3.18
4726 5152 8.857098 ACTTCCCCAAGTAATTTTTCTTTCTAC 58.143 33.333 0.00 0.00 41.39 2.59
4728 5154 7.914427 ACTTCCCCAAGTAATTTTTCTTTCT 57.086 32.000 0.00 0.00 41.39 2.52
4740 5166 4.410099 TCGTCTCTTTACTTCCCCAAGTA 58.590 43.478 0.00 0.00 41.39 2.24
4747 5173 5.570234 AGAGTCATCGTCTCTTTACTTCC 57.430 43.478 0.00 0.00 38.91 3.46
4756 5182 2.223157 CGTCCTGAAGAGTCATCGTCTC 60.223 54.545 0.00 0.00 35.26 3.36
4758 5184 1.738350 TCGTCCTGAAGAGTCATCGTC 59.262 52.381 0.00 0.00 34.84 4.20
4760 5186 3.111838 CAATCGTCCTGAAGAGTCATCG 58.888 50.000 0.00 0.00 31.85 3.84
4761 5187 3.862267 CACAATCGTCCTGAAGAGTCATC 59.138 47.826 0.00 0.00 31.85 2.92
4762 5188 3.368843 CCACAATCGTCCTGAAGAGTCAT 60.369 47.826 0.00 0.00 31.85 3.06
4763 5189 2.029020 CCACAATCGTCCTGAAGAGTCA 60.029 50.000 0.00 0.00 0.00 3.41
4764 5190 2.028930 ACCACAATCGTCCTGAAGAGTC 60.029 50.000 0.00 0.00 0.00 3.36
4765 5191 1.971357 ACCACAATCGTCCTGAAGAGT 59.029 47.619 0.00 0.00 0.00 3.24
4766 5192 2.341257 CACCACAATCGTCCTGAAGAG 58.659 52.381 0.00 0.00 0.00 2.85
4767 5193 1.001974 CCACCACAATCGTCCTGAAGA 59.998 52.381 0.00 0.00 0.00 2.87
4779 5208 1.150536 GCTGGAGGAACCACCACAA 59.849 57.895 5.94 0.00 44.64 3.33
4780 5209 1.352622 AAGCTGGAGGAACCACCACA 61.353 55.000 5.94 0.00 44.64 4.17
4790 5219 1.239968 GCCTGTTGTGAAGCTGGAGG 61.240 60.000 0.00 0.00 0.00 4.30
4795 5224 1.767759 AACAAGCCTGTTGTGAAGCT 58.232 45.000 0.00 0.00 44.28 3.74
4804 5233 0.610232 GAGCATCCCAACAAGCCTGT 60.610 55.000 0.00 0.00 37.39 4.00
4805 5234 1.651240 CGAGCATCCCAACAAGCCTG 61.651 60.000 0.00 0.00 0.00 4.85
4806 5235 1.377725 CGAGCATCCCAACAAGCCT 60.378 57.895 0.00 0.00 0.00 4.58
4807 5236 2.409870 CCGAGCATCCCAACAAGCC 61.410 63.158 0.00 0.00 0.00 4.35
4808 5237 3.056313 GCCGAGCATCCCAACAAGC 62.056 63.158 0.00 0.00 0.00 4.01
4809 5238 1.243342 TTGCCGAGCATCCCAACAAG 61.243 55.000 0.00 0.00 38.76 3.16
4810 5239 1.228398 TTGCCGAGCATCCCAACAA 60.228 52.632 0.00 0.00 38.76 2.83
4811 5240 1.675310 CTTGCCGAGCATCCCAACA 60.675 57.895 0.00 0.00 38.76 3.33
4823 5252 2.359107 TTGAGAGCCAGCTTGCCG 60.359 61.111 6.10 0.00 0.00 5.69
4824 5253 0.892814 AACTTGAGAGCCAGCTTGCC 60.893 55.000 6.10 0.00 0.00 4.52
4860 5289 4.069304 TGCTAGTTAAATGTTCCAACGCT 58.931 39.130 0.00 0.00 0.00 5.07
4886 5315 8.372459 TGGAGAATCTAGTACAACTAAAGCAAA 58.628 33.333 0.00 0.00 33.73 3.68
4893 5322 4.894114 GGCCTGGAGAATCTAGTACAACTA 59.106 45.833 0.00 0.00 42.90 2.24
4897 5326 3.052869 TCTGGCCTGGAGAATCTAGTACA 60.053 47.826 10.07 0.00 42.90 2.90
4898 5327 3.567397 TCTGGCCTGGAGAATCTAGTAC 58.433 50.000 10.07 0.00 42.90 2.73
4900 5329 2.246067 TCTCTGGCCTGGAGAATCTAGT 59.754 50.000 21.02 0.00 42.90 2.57
4901 5330 2.956132 TCTCTGGCCTGGAGAATCTAG 58.044 52.381 21.02 5.66 44.22 2.43
4971 5400 8.964772 ACTTTTGGATCTAAATCAATGAAGGAG 58.035 33.333 4.96 0.00 33.21 3.69
4987 5416 6.030228 GCAGCTTACATGTTACTTTTGGATC 58.970 40.000 2.30 0.00 0.00 3.36
4989 5418 5.048782 CAGCAGCTTACATGTTACTTTTGGA 60.049 40.000 2.30 0.00 0.00 3.53
4998 5427 1.457346 GCTCCAGCAGCTTACATGTT 58.543 50.000 2.30 0.00 45.83 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.