Multiple sequence alignment - TraesCS7B01G499200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G499200 chr7B 100.000 2624 0 0 1 2624 749547178 749549801 0.000000e+00 4846.0
1 TraesCS7B01G499200 chr7B 81.801 533 91 5 1073 1602 748459133 748458604 2.400000e-120 442.0
2 TraesCS7B01G499200 chr7B 98.500 200 3 0 2193 2392 698126715 698126914 1.160000e-93 353.0
3 TraesCS7B01G499200 chr7B 98.000 200 4 0 2193 2392 47219666 47219467 5.380000e-92 348.0
4 TraesCS7B01G499200 chr7B 98.000 200 4 0 2193 2392 716795620 716795819 5.380000e-92 348.0
5 TraesCS7B01G499200 chr7D 92.597 1756 61 23 476 2187 633530952 633532682 0.000000e+00 2459.0
6 TraesCS7B01G499200 chr7D 86.260 262 31 3 1 258 633525976 633526236 1.990000e-71 279.0
7 TraesCS7B01G499200 chr7D 99.286 140 1 0 339 478 633526234 633526373 1.210000e-63 254.0
8 TraesCS7B01G499200 chr7D 93.151 146 7 1 2410 2552 633532683 633532828 7.360000e-51 211.0
9 TraesCS7B01G499200 chr7D 80.909 110 18 3 2086 2194 94126697 94126590 1.670000e-12 84.2
10 TraesCS7B01G499200 chr7A 87.545 1381 88 32 863 2191 733531048 733529700 0.000000e+00 1520.0
11 TraesCS7B01G499200 chr7A 89.425 435 18 5 450 866 733531528 733531104 8.320000e-145 523.0
12 TraesCS7B01G499200 chr7A 98.500 200 3 0 2193 2392 60095980 60096179 1.160000e-93 353.0
13 TraesCS7B01G499200 chr7A 88.797 241 19 6 2391 2624 733529694 733529455 3.300000e-74 289.0
14 TraesCS7B01G499200 chr7A 85.537 242 26 6 23 258 733531841 733531603 7.250000e-61 244.0
15 TraesCS7B01G499200 chr7A 83.108 148 21 4 2048 2194 97410933 97410789 5.890000e-27 132.0
16 TraesCS7B01G499200 chr7A 93.827 81 2 1 339 419 733531605 733531528 4.590000e-23 119.0
17 TraesCS7B01G499200 chr6B 98.500 200 3 0 2193 2392 128889765 128889964 1.160000e-93 353.0
18 TraesCS7B01G499200 chr5B 98.500 200 3 0 2193 2392 713095983 713095784 1.160000e-93 353.0
19 TraesCS7B01G499200 chr5B 89.000 100 10 1 242 341 140966028 140965930 3.550000e-24 122.0
20 TraesCS7B01G499200 chr4D 98.000 200 4 0 2193 2392 123689180 123688981 5.380000e-92 348.0
21 TraesCS7B01G499200 chr4B 98.477 197 3 0 2193 2389 495537557 495537753 5.380000e-92 348.0
22 TraesCS7B01G499200 chr1D 98.000 200 4 0 2193 2392 212429087 212428888 5.380000e-92 348.0
23 TraesCS7B01G499200 chr2D 86.806 144 14 5 2401 2540 649803572 649803430 3.500000e-34 156.0
24 TraesCS7B01G499200 chr2A 84.472 161 22 3 2406 2565 775028405 775028563 3.500000e-34 156.0
25 TraesCS7B01G499200 chr2A 79.710 207 37 2 2406 2611 552491255 552491053 7.570000e-31 145.0
26 TraesCS7B01G499200 chr2A 90.426 94 9 0 256 349 752101641 752101548 9.860000e-25 124.0
27 TraesCS7B01G499200 chr3D 93.023 86 6 0 256 341 66523464 66523379 2.740000e-25 126.0
28 TraesCS7B01G499200 chr3D 86.792 106 12 2 241 346 436676998 436676895 1.650000e-22 117.0
29 TraesCS7B01G499200 chr5D 89.000 100 10 1 242 341 128577686 128577588 3.550000e-24 122.0
30 TraesCS7B01G499200 chr5D 91.954 87 7 0 255 341 381151915 381152001 3.550000e-24 122.0
31 TraesCS7B01G499200 chr3A 88.776 98 11 0 253 350 620473490 620473587 1.280000e-23 121.0
32 TraesCS7B01G499200 chr5A 88.542 96 11 0 254 349 356499636 356499731 1.650000e-22 117.0
33 TraesCS7B01G499200 chr6D 85.981 107 15 0 251 357 299191353 299191247 5.930000e-22 115.0
34 TraesCS7B01G499200 chr3B 90.000 60 6 0 2401 2460 201313314 201313373 7.790000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G499200 chr7B 749547178 749549801 2623 False 4846 4846 100.0000 1 2624 1 chr7B.!!$F3 2623
1 TraesCS7B01G499200 chr7B 748458604 748459133 529 True 442 442 81.8010 1073 1602 1 chr7B.!!$R2 529
2 TraesCS7B01G499200 chr7D 633530952 633532828 1876 False 1335 2459 92.8740 476 2552 2 chr7D.!!$F2 2076
3 TraesCS7B01G499200 chr7A 733529455 733531841 2386 True 539 1520 89.0262 23 2624 5 chr7A.!!$R2 2601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.234884 CACGCAAAACGAAGTCCTCC 59.765 55.0 0.0 0.0 45.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2127 0.872388 ATGCTTTCGACACCGGTTTC 59.128 50.0 2.97 7.76 36.24 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.860918 TCCATGTATACATATAGACCGAGAC 57.139 40.000 17.86 0.00 34.26 3.36
42 43 8.765517 TCCATGTATACATATAGACCGAGACTA 58.234 37.037 17.86 0.00 34.26 2.59
43 44 9.562408 CCATGTATACATATAGACCGAGACTAT 57.438 37.037 17.86 0.00 34.26 2.12
74 75 0.234884 CACGCAAAACGAAGTCCTCC 59.765 55.000 0.00 0.00 45.00 4.30
81 82 4.620803 GCAAAACGAAGTCCTCCTAGATGA 60.621 45.833 0.00 0.00 45.00 2.92
91 92 4.081420 GTCCTCCTAGATGACAAGCTTTGA 60.081 45.833 0.00 0.00 29.79 2.69
94 95 6.384015 TCCTCCTAGATGACAAGCTTTGATTA 59.616 38.462 0.00 0.00 0.00 1.75
97 98 9.118300 CTCCTAGATGACAAGCTTTGATTATTT 57.882 33.333 0.00 0.00 0.00 1.40
142 143 5.119931 TGCTAGTTGTTATGTTGCTTTGG 57.880 39.130 0.00 0.00 0.00 3.28
144 145 3.011949 AGTTGTTATGTTGCTTTGGCG 57.988 42.857 0.00 0.00 42.25 5.69
148 149 1.135402 GTTATGTTGCTTTGGCGGGAG 60.135 52.381 0.00 0.00 42.25 4.30
150 151 3.373565 GTTGCTTTGGCGGGAGGG 61.374 66.667 0.00 0.00 42.25 4.30
160 161 2.931068 GCGGGAGGGCAAACTTTGG 61.931 63.158 3.69 0.00 0.00 3.28
205 209 2.158623 TCCTGGATTGTGACTTGTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
264 268 9.880157 TGTTATGTTTTAGTTATGTACTCCCTC 57.120 33.333 0.00 0.00 38.33 4.30
267 271 7.549147 TGTTTTAGTTATGTACTCCCTCTGT 57.451 36.000 0.00 0.00 38.33 3.41
268 272 8.654485 TGTTTTAGTTATGTACTCCCTCTGTA 57.346 34.615 0.00 0.00 38.33 2.74
269 273 9.092338 TGTTTTAGTTATGTACTCCCTCTGTAA 57.908 33.333 0.00 0.00 38.33 2.41
270 274 9.933723 GTTTTAGTTATGTACTCCCTCTGTAAA 57.066 33.333 0.00 0.00 38.33 2.01
272 276 9.537852 TTTAGTTATGTACTCCCTCTGTAAAGA 57.462 33.333 0.00 0.00 38.33 2.52
273 277 9.537852 TTAGTTATGTACTCCCTCTGTAAAGAA 57.462 33.333 0.00 0.00 38.33 2.52
274 278 8.431910 AGTTATGTACTCCCTCTGTAAAGAAA 57.568 34.615 0.00 0.00 28.23 2.52
275 279 9.047947 AGTTATGTACTCCCTCTGTAAAGAAAT 57.952 33.333 0.00 0.00 28.23 2.17
283 287 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
284 288 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
285 289 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
286 290 7.382759 CCCTCTGTAAAGAAATATAAGAGCGTC 59.617 40.741 0.00 0.00 0.00 5.19
287 291 8.138712 CCTCTGTAAAGAAATATAAGAGCGTCT 58.861 37.037 0.00 0.00 0.00 4.18
294 298 9.685828 AAAGAAATATAAGAGCGTCTAGATCAC 57.314 33.333 0.00 0.00 37.82 3.06
295 299 8.630054 AGAAATATAAGAGCGTCTAGATCACT 57.370 34.615 0.00 0.00 37.82 3.41
296 300 9.727859 AGAAATATAAGAGCGTCTAGATCACTA 57.272 33.333 0.00 0.00 37.82 2.74
300 304 7.811117 ATAAGAGCGTCTAGATCACTAAAGT 57.189 36.000 0.00 0.00 37.82 2.66
301 305 8.905660 ATAAGAGCGTCTAGATCACTAAAGTA 57.094 34.615 0.00 0.00 37.82 2.24
302 306 7.627298 AAGAGCGTCTAGATCACTAAAGTAA 57.373 36.000 0.00 0.00 37.82 2.24
303 307 7.811117 AGAGCGTCTAGATCACTAAAGTAAT 57.189 36.000 0.00 0.00 37.82 1.89
304 308 7.644490 AGAGCGTCTAGATCACTAAAGTAATG 58.356 38.462 0.00 0.00 37.82 1.90
305 309 7.499563 AGAGCGTCTAGATCACTAAAGTAATGA 59.500 37.037 0.00 0.00 37.82 2.57
306 310 8.172352 AGCGTCTAGATCACTAAAGTAATGAT 57.828 34.615 0.00 0.00 35.77 2.45
307 311 8.293867 AGCGTCTAGATCACTAAAGTAATGATC 58.706 37.037 0.00 5.50 46.04 2.92
308 312 7.539366 GCGTCTAGATCACTAAAGTAATGATCC 59.461 40.741 9.29 0.00 46.61 3.36
309 313 8.568794 CGTCTAGATCACTAAAGTAATGATCCA 58.431 37.037 9.29 0.00 46.61 3.41
314 318 9.606631 AGATCACTAAAGTAATGATCCAAAGAC 57.393 33.333 9.29 0.00 46.61 3.01
315 319 9.606631 GATCACTAAAGTAATGATCCAAAGACT 57.393 33.333 2.66 0.00 41.88 3.24
316 320 9.606631 ATCACTAAAGTAATGATCCAAAGACTC 57.393 33.333 0.00 0.00 0.00 3.36
317 321 8.816894 TCACTAAAGTAATGATCCAAAGACTCT 58.183 33.333 0.00 0.00 0.00 3.24
318 322 9.442047 CACTAAAGTAATGATCCAAAGACTCTT 57.558 33.333 0.00 0.00 0.00 2.85
367 371 4.724399 ACAACACCATGTCCTTGTTATGA 58.276 39.130 0.00 0.00 32.19 2.15
381 385 6.204688 TCCTTGTTATGAGCTAGTTGTTGTTG 59.795 38.462 0.00 0.00 0.00 3.33
382 386 6.017109 CCTTGTTATGAGCTAGTTGTTGTTGT 60.017 38.462 0.00 0.00 0.00 3.32
383 387 6.935741 TGTTATGAGCTAGTTGTTGTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
384 388 8.439993 TTGTTATGAGCTAGTTGTTGTTGTTA 57.560 30.769 0.00 0.00 0.00 2.41
385 389 8.615878 TGTTATGAGCTAGTTGTTGTTGTTAT 57.384 30.769 0.00 0.00 0.00 1.89
419 423 2.503331 CAGTGCACCATGTCCTTGTTA 58.497 47.619 14.63 0.00 0.00 2.41
420 424 3.084039 CAGTGCACCATGTCCTTGTTAT 58.916 45.455 14.63 0.00 0.00 1.89
421 425 3.084039 AGTGCACCATGTCCTTGTTATG 58.916 45.455 14.63 0.00 0.00 1.90
422 426 2.819608 GTGCACCATGTCCTTGTTATGT 59.180 45.455 5.22 0.00 0.00 2.29
423 427 2.819019 TGCACCATGTCCTTGTTATGTG 59.181 45.455 0.00 0.00 0.00 3.21
424 428 2.415893 GCACCATGTCCTTGTTATGTGC 60.416 50.000 0.00 0.00 0.00 4.57
425 429 3.084039 CACCATGTCCTTGTTATGTGCT 58.916 45.455 0.00 0.00 0.00 4.40
426 430 4.260985 CACCATGTCCTTGTTATGTGCTA 58.739 43.478 0.00 0.00 0.00 3.49
427 431 4.333649 CACCATGTCCTTGTTATGTGCTAG 59.666 45.833 0.00 0.00 0.00 3.42
428 432 4.019321 ACCATGTCCTTGTTATGTGCTAGT 60.019 41.667 0.00 0.00 0.00 2.57
429 433 4.943705 CCATGTCCTTGTTATGTGCTAGTT 59.056 41.667 0.00 0.00 0.00 2.24
430 434 5.163723 CCATGTCCTTGTTATGTGCTAGTTG 60.164 44.000 0.00 0.00 0.00 3.16
431 435 3.751175 TGTCCTTGTTATGTGCTAGTTGC 59.249 43.478 0.00 0.00 43.25 4.17
432 436 4.003648 GTCCTTGTTATGTGCTAGTTGCT 58.996 43.478 0.00 0.00 43.37 3.91
433 437 4.455877 GTCCTTGTTATGTGCTAGTTGCTT 59.544 41.667 0.00 0.00 43.37 3.91
434 438 5.048713 GTCCTTGTTATGTGCTAGTTGCTTT 60.049 40.000 0.00 0.00 43.37 3.51
435 439 5.534654 TCCTTGTTATGTGCTAGTTGCTTTT 59.465 36.000 0.00 0.00 43.37 2.27
436 440 6.712998 TCCTTGTTATGTGCTAGTTGCTTTTA 59.287 34.615 0.00 0.00 43.37 1.52
437 441 7.393234 TCCTTGTTATGTGCTAGTTGCTTTTAT 59.607 33.333 0.00 0.00 43.37 1.40
438 442 7.485913 CCTTGTTATGTGCTAGTTGCTTTTATG 59.514 37.037 0.00 0.00 43.37 1.90
439 443 7.680442 TGTTATGTGCTAGTTGCTTTTATGA 57.320 32.000 0.00 0.00 43.37 2.15
440 444 8.105097 TGTTATGTGCTAGTTGCTTTTATGAA 57.895 30.769 0.00 0.00 43.37 2.57
441 445 8.020819 TGTTATGTGCTAGTTGCTTTTATGAAC 58.979 33.333 0.00 0.00 43.37 3.18
442 446 6.824305 ATGTGCTAGTTGCTTTTATGAACT 57.176 33.333 0.00 0.00 43.37 3.01
443 447 7.921786 ATGTGCTAGTTGCTTTTATGAACTA 57.078 32.000 0.00 0.00 43.37 2.24
444 448 7.129109 TGTGCTAGTTGCTTTTATGAACTAC 57.871 36.000 0.00 0.00 43.37 2.73
445 449 6.708502 TGTGCTAGTTGCTTTTATGAACTACA 59.291 34.615 0.00 0.00 43.37 2.74
446 450 7.015877 GTGCTAGTTGCTTTTATGAACTACAC 58.984 38.462 0.00 0.00 43.37 2.90
447 451 6.148811 TGCTAGTTGCTTTTATGAACTACACC 59.851 38.462 0.00 0.00 43.37 4.16
448 452 6.148811 GCTAGTTGCTTTTATGAACTACACCA 59.851 38.462 0.00 0.00 38.95 4.17
449 453 7.148239 GCTAGTTGCTTTTATGAACTACACCAT 60.148 37.037 0.00 0.00 38.95 3.55
488 495 4.757019 TTGGCTGGACCGTTGTTATATA 57.243 40.909 0.00 0.00 43.94 0.86
795 817 5.643348 AGCATCATCAGTTAATTTGACGACA 59.357 36.000 0.00 0.00 0.00 4.35
817 839 2.667473 ACCGATGTACAAGTAGCACC 57.333 50.000 0.00 0.00 0.00 5.01
839 861 2.239751 TTAACAATCACACGCATGCG 57.760 45.000 36.79 36.79 46.03 4.73
918 1003 1.831736 AGTAGTAGAGCAAATGGGCGT 59.168 47.619 0.00 0.00 39.27 5.68
935 1020 3.304721 TGCAATGCACCACCAGCC 61.305 61.111 2.72 0.00 31.71 4.85
998 1085 2.472695 AATTACAAGTGAGCCGAGCA 57.527 45.000 0.00 0.00 0.00 4.26
1643 1731 6.146347 GCCTAGTAATTAGCAAGCATACAGAC 59.854 42.308 0.00 0.00 0.00 3.51
1699 1787 6.818644 TGTCTCCTATGTTCTCTAAATTGTGC 59.181 38.462 0.00 0.00 0.00 4.57
2033 2158 1.590238 CGAAAGCATCGCTCTTGGTAG 59.410 52.381 0.00 0.00 45.89 3.18
2156 2297 5.047188 GCATGTGCATCATCATGATCAAAA 58.953 37.500 16.75 0.00 42.52 2.44
2191 2332 6.948309 TCATCTTCGTCCATCTCATATTCCTA 59.052 38.462 0.00 0.00 0.00 2.94
2193 2334 8.907885 CATCTTCGTCCATCTCATATTCCTATA 58.092 37.037 0.00 0.00 0.00 1.31
2194 2335 8.879427 TCTTCGTCCATCTCATATTCCTATAA 57.121 34.615 0.00 0.00 0.00 0.98
2195 2336 9.480861 TCTTCGTCCATCTCATATTCCTATAAT 57.519 33.333 0.00 0.00 0.00 1.28
2196 2337 9.743057 CTTCGTCCATCTCATATTCCTATAATC 57.257 37.037 0.00 0.00 0.00 1.75
2197 2338 7.931275 TCGTCCATCTCATATTCCTATAATCG 58.069 38.462 0.00 0.00 0.00 3.34
2198 2339 7.773690 TCGTCCATCTCATATTCCTATAATCGA 59.226 37.037 0.00 0.00 0.00 3.59
2199 2340 8.572185 CGTCCATCTCATATTCCTATAATCGAT 58.428 37.037 0.00 0.00 0.00 3.59
2211 2352 9.778741 ATTCCTATAATCGATAACAAAGCTGAA 57.221 29.630 0.00 0.00 0.00 3.02
2212 2353 9.778741 TTCCTATAATCGATAACAAAGCTGAAT 57.221 29.630 0.00 0.00 0.00 2.57
2213 2354 9.208022 TCCTATAATCGATAACAAAGCTGAATG 57.792 33.333 0.00 0.00 0.00 2.67
2214 2355 8.446273 CCTATAATCGATAACAAAGCTGAATGG 58.554 37.037 0.00 0.00 0.00 3.16
2215 2356 4.558538 ATCGATAACAAAGCTGAATGGC 57.441 40.909 0.00 0.00 0.00 4.40
2216 2357 3.609853 TCGATAACAAAGCTGAATGGCT 58.390 40.909 0.00 0.00 45.30 4.75
2238 2379 2.889170 TTTCGGTCCAATTCCATCCA 57.111 45.000 0.00 0.00 0.00 3.41
2239 2380 3.380471 TTTCGGTCCAATTCCATCCAT 57.620 42.857 0.00 0.00 0.00 3.41
2240 2381 3.380471 TTCGGTCCAATTCCATCCATT 57.620 42.857 0.00 0.00 0.00 3.16
2241 2382 3.380471 TCGGTCCAATTCCATCCATTT 57.620 42.857 0.00 0.00 0.00 2.32
2242 2383 3.707316 TCGGTCCAATTCCATCCATTTT 58.293 40.909 0.00 0.00 0.00 1.82
2243 2384 4.093011 TCGGTCCAATTCCATCCATTTTT 58.907 39.130 0.00 0.00 0.00 1.94
2244 2385 4.081752 TCGGTCCAATTCCATCCATTTTTG 60.082 41.667 0.00 0.00 0.00 2.44
2245 2386 4.322650 CGGTCCAATTCCATCCATTTTTGT 60.323 41.667 0.00 0.00 0.00 2.83
2246 2387 5.559770 GGTCCAATTCCATCCATTTTTGTT 58.440 37.500 0.00 0.00 0.00 2.83
2247 2388 5.412286 GGTCCAATTCCATCCATTTTTGTTG 59.588 40.000 0.00 0.00 0.00 3.33
2248 2389 6.229733 GTCCAATTCCATCCATTTTTGTTGA 58.770 36.000 0.00 0.00 0.00 3.18
2249 2390 6.369615 GTCCAATTCCATCCATTTTTGTTGAG 59.630 38.462 0.00 0.00 0.00 3.02
2250 2391 5.644636 CCAATTCCATCCATTTTTGTTGAGG 59.355 40.000 0.00 0.00 0.00 3.86
2251 2392 3.959535 TCCATCCATTTTTGTTGAGGC 57.040 42.857 0.00 0.00 0.00 4.70
2252 2393 3.237746 TCCATCCATTTTTGTTGAGGCA 58.762 40.909 0.00 0.00 0.00 4.75
2253 2394 3.645212 TCCATCCATTTTTGTTGAGGCAA 59.355 39.130 0.00 0.00 0.00 4.52
2254 2395 4.286549 TCCATCCATTTTTGTTGAGGCAAT 59.713 37.500 0.00 0.00 0.00 3.56
2255 2396 5.005094 CCATCCATTTTTGTTGAGGCAATT 58.995 37.500 0.00 0.00 0.00 2.32
2256 2397 5.122711 CCATCCATTTTTGTTGAGGCAATTC 59.877 40.000 0.00 0.00 0.00 2.17
2257 2398 5.549742 TCCATTTTTGTTGAGGCAATTCT 57.450 34.783 0.00 0.00 0.00 2.40
2258 2399 5.927819 TCCATTTTTGTTGAGGCAATTCTT 58.072 33.333 0.00 0.00 0.00 2.52
2259 2400 7.060383 TCCATTTTTGTTGAGGCAATTCTTA 57.940 32.000 0.00 0.00 0.00 2.10
2260 2401 6.928492 TCCATTTTTGTTGAGGCAATTCTTAC 59.072 34.615 0.00 0.00 0.00 2.34
2261 2402 6.930722 CCATTTTTGTTGAGGCAATTCTTACT 59.069 34.615 0.00 0.00 0.00 2.24
2262 2403 7.442062 CCATTTTTGTTGAGGCAATTCTTACTT 59.558 33.333 0.00 0.00 0.00 2.24
2263 2404 7.769272 TTTTTGTTGAGGCAATTCTTACTTG 57.231 32.000 0.00 0.00 0.00 3.16
2264 2405 6.463995 TTTGTTGAGGCAATTCTTACTTGT 57.536 33.333 0.00 0.00 0.00 3.16
2265 2406 6.463995 TTGTTGAGGCAATTCTTACTTGTT 57.536 33.333 0.00 0.00 0.00 2.83
2266 2407 6.072112 TGTTGAGGCAATTCTTACTTGTTC 57.928 37.500 0.00 0.00 0.00 3.18
2267 2408 5.592282 TGTTGAGGCAATTCTTACTTGTTCA 59.408 36.000 0.00 0.00 0.00 3.18
2268 2409 6.265196 TGTTGAGGCAATTCTTACTTGTTCAT 59.735 34.615 0.00 0.00 0.00 2.57
2269 2410 6.500684 TGAGGCAATTCTTACTTGTTCATC 57.499 37.500 0.00 0.00 0.00 2.92
2270 2411 5.122239 TGAGGCAATTCTTACTTGTTCATCG 59.878 40.000 0.00 0.00 0.00 3.84
2271 2412 4.396166 AGGCAATTCTTACTTGTTCATCGG 59.604 41.667 0.00 0.00 0.00 4.18
2272 2413 4.438744 GGCAATTCTTACTTGTTCATCGGG 60.439 45.833 0.00 0.00 0.00 5.14
2273 2414 4.394920 GCAATTCTTACTTGTTCATCGGGA 59.605 41.667 0.00 0.00 0.00 5.14
2274 2415 5.106317 GCAATTCTTACTTGTTCATCGGGAA 60.106 40.000 0.00 0.00 0.00 3.97
2275 2416 6.546395 CAATTCTTACTTGTTCATCGGGAAG 58.454 40.000 0.00 0.00 35.82 3.46
2276 2417 4.884668 TCTTACTTGTTCATCGGGAAGT 57.115 40.909 0.00 0.00 35.82 3.01
2277 2418 4.566004 TCTTACTTGTTCATCGGGAAGTG 58.434 43.478 0.00 0.00 35.82 3.16
2278 2419 4.282449 TCTTACTTGTTCATCGGGAAGTGA 59.718 41.667 0.00 0.00 35.82 3.41
2279 2420 3.703001 ACTTGTTCATCGGGAAGTGAT 57.297 42.857 0.00 0.00 35.82 3.06
2280 2421 3.600388 ACTTGTTCATCGGGAAGTGATC 58.400 45.455 0.00 0.00 35.82 2.92
2281 2422 3.261897 ACTTGTTCATCGGGAAGTGATCT 59.738 43.478 0.00 0.00 35.82 2.75
2282 2423 4.466370 ACTTGTTCATCGGGAAGTGATCTA 59.534 41.667 0.00 0.00 35.82 1.98
2283 2424 4.655762 TGTTCATCGGGAAGTGATCTAG 57.344 45.455 0.00 0.00 35.82 2.43
2284 2425 3.181475 TGTTCATCGGGAAGTGATCTAGC 60.181 47.826 0.00 0.00 35.82 3.42
2285 2426 2.950781 TCATCGGGAAGTGATCTAGCT 58.049 47.619 0.00 0.00 0.00 3.32
2286 2427 2.887783 TCATCGGGAAGTGATCTAGCTC 59.112 50.000 0.00 0.00 0.00 4.09
2287 2428 1.693627 TCGGGAAGTGATCTAGCTCC 58.306 55.000 0.00 0.00 0.00 4.70
2288 2429 1.215673 TCGGGAAGTGATCTAGCTCCT 59.784 52.381 0.00 0.00 0.00 3.69
2289 2430 1.339610 CGGGAAGTGATCTAGCTCCTG 59.660 57.143 0.00 0.00 0.00 3.86
2290 2431 2.672098 GGGAAGTGATCTAGCTCCTGA 58.328 52.381 0.00 0.00 0.00 3.86
2291 2432 2.627699 GGGAAGTGATCTAGCTCCTGAG 59.372 54.545 0.00 0.00 0.00 3.35
2292 2433 3.561143 GGAAGTGATCTAGCTCCTGAGA 58.439 50.000 0.00 0.00 0.00 3.27
2293 2434 4.151883 GGAAGTGATCTAGCTCCTGAGAT 58.848 47.826 0.00 0.00 35.07 2.75
2294 2435 5.321102 GGAAGTGATCTAGCTCCTGAGATA 58.679 45.833 0.00 0.00 32.47 1.98
2295 2436 5.951747 GGAAGTGATCTAGCTCCTGAGATAT 59.048 44.000 0.00 0.00 32.47 1.63
2296 2437 7.116075 GGAAGTGATCTAGCTCCTGAGATATA 58.884 42.308 0.00 0.00 32.47 0.86
2297 2438 7.779798 GGAAGTGATCTAGCTCCTGAGATATAT 59.220 40.741 0.00 0.00 32.47 0.86
2298 2439 8.523915 AAGTGATCTAGCTCCTGAGATATATG 57.476 38.462 0.00 0.00 32.47 1.78
2299 2440 7.871082 AGTGATCTAGCTCCTGAGATATATGA 58.129 38.462 0.00 0.00 32.47 2.15
2300 2441 7.775093 AGTGATCTAGCTCCTGAGATATATGAC 59.225 40.741 0.00 0.00 32.47 3.06
2301 2442 7.555914 GTGATCTAGCTCCTGAGATATATGACA 59.444 40.741 0.00 0.00 32.47 3.58
2302 2443 8.280807 TGATCTAGCTCCTGAGATATATGACAT 58.719 37.037 0.00 0.00 32.47 3.06
2303 2444 9.135189 GATCTAGCTCCTGAGATATATGACATT 57.865 37.037 0.00 0.00 32.47 2.71
2304 2445 8.518430 TCTAGCTCCTGAGATATATGACATTC 57.482 38.462 0.00 0.00 0.00 2.67
2305 2446 8.335484 TCTAGCTCCTGAGATATATGACATTCT 58.665 37.037 0.00 0.00 0.00 2.40
2306 2447 7.795534 AGCTCCTGAGATATATGACATTCTT 57.204 36.000 0.00 0.00 0.00 2.52
2307 2448 8.204903 AGCTCCTGAGATATATGACATTCTTT 57.795 34.615 0.00 0.00 0.00 2.52
2308 2449 9.319060 AGCTCCTGAGATATATGACATTCTTTA 57.681 33.333 0.00 0.00 0.00 1.85
2325 2466 9.413734 ACATTCTTTATCCTTATCTTTTCCTGG 57.586 33.333 0.00 0.00 0.00 4.45
2326 2467 9.413734 CATTCTTTATCCTTATCTTTTCCTGGT 57.586 33.333 0.00 0.00 0.00 4.00
2327 2468 9.634021 ATTCTTTATCCTTATCTTTTCCTGGTC 57.366 33.333 0.00 0.00 0.00 4.02
2328 2469 8.393959 TCTTTATCCTTATCTTTTCCTGGTCT 57.606 34.615 0.00 0.00 0.00 3.85
2329 2470 8.836735 TCTTTATCCTTATCTTTTCCTGGTCTT 58.163 33.333 0.00 0.00 0.00 3.01
2330 2471 9.114952 CTTTATCCTTATCTTTTCCTGGTCTTC 57.885 37.037 0.00 0.00 0.00 2.87
2331 2472 6.899892 ATCCTTATCTTTTCCTGGTCTTCT 57.100 37.500 0.00 0.00 0.00 2.85
2332 2473 6.704056 TCCTTATCTTTTCCTGGTCTTCTT 57.296 37.500 0.00 0.00 0.00 2.52
2333 2474 6.476378 TCCTTATCTTTTCCTGGTCTTCTTG 58.524 40.000 0.00 0.00 0.00 3.02
2334 2475 5.649831 CCTTATCTTTTCCTGGTCTTCTTGG 59.350 44.000 0.00 0.00 0.00 3.61
2335 2476 2.863809 TCTTTTCCTGGTCTTCTTGGC 58.136 47.619 0.00 0.00 0.00 4.52
2336 2477 2.443255 TCTTTTCCTGGTCTTCTTGGCT 59.557 45.455 0.00 0.00 0.00 4.75
2337 2478 2.276732 TTTCCTGGTCTTCTTGGCTG 57.723 50.000 0.00 0.00 0.00 4.85
2338 2479 0.401738 TTCCTGGTCTTCTTGGCTGG 59.598 55.000 0.00 0.00 0.00 4.85
2339 2480 0.473694 TCCTGGTCTTCTTGGCTGGA 60.474 55.000 0.00 0.00 0.00 3.86
2340 2481 0.401738 CCTGGTCTTCTTGGCTGGAA 59.598 55.000 0.00 0.00 0.00 3.53
2341 2482 1.005215 CCTGGTCTTCTTGGCTGGAAT 59.995 52.381 0.00 0.00 0.00 3.01
2342 2483 2.363683 CTGGTCTTCTTGGCTGGAATC 58.636 52.381 0.00 0.00 0.00 2.52
2343 2484 1.988107 TGGTCTTCTTGGCTGGAATCT 59.012 47.619 0.00 0.00 0.00 2.40
2344 2485 3.181329 TGGTCTTCTTGGCTGGAATCTA 58.819 45.455 0.00 0.00 0.00 1.98
2345 2486 3.055094 TGGTCTTCTTGGCTGGAATCTAC 60.055 47.826 0.00 0.00 0.00 2.59
2346 2487 3.055094 GGTCTTCTTGGCTGGAATCTACA 60.055 47.826 0.00 0.00 0.00 2.74
2347 2488 4.565652 GGTCTTCTTGGCTGGAATCTACAA 60.566 45.833 0.00 0.00 0.00 2.41
2348 2489 5.189180 GTCTTCTTGGCTGGAATCTACAAT 58.811 41.667 0.00 0.00 0.00 2.71
2349 2490 5.295540 GTCTTCTTGGCTGGAATCTACAATC 59.704 44.000 0.00 0.00 0.00 2.67
2350 2491 5.190528 TCTTCTTGGCTGGAATCTACAATCT 59.809 40.000 0.00 0.00 0.00 2.40
2351 2492 6.384015 TCTTCTTGGCTGGAATCTACAATCTA 59.616 38.462 0.00 0.00 0.00 1.98
2352 2493 5.918608 TCTTGGCTGGAATCTACAATCTAC 58.081 41.667 0.00 0.00 0.00 2.59
2353 2494 5.425217 TCTTGGCTGGAATCTACAATCTACA 59.575 40.000 0.00 0.00 0.00 2.74
2354 2495 5.023533 TGGCTGGAATCTACAATCTACAC 57.976 43.478 0.00 0.00 0.00 2.90
2355 2496 4.141711 TGGCTGGAATCTACAATCTACACC 60.142 45.833 0.00 0.00 0.00 4.16
2356 2497 4.101741 GGCTGGAATCTACAATCTACACCT 59.898 45.833 0.00 0.00 0.00 4.00
2357 2498 5.293560 GCTGGAATCTACAATCTACACCTC 58.706 45.833 0.00 0.00 0.00 3.85
2358 2499 5.069781 GCTGGAATCTACAATCTACACCTCT 59.930 44.000 0.00 0.00 0.00 3.69
2359 2500 6.716934 TGGAATCTACAATCTACACCTCTC 57.283 41.667 0.00 0.00 0.00 3.20
2360 2501 5.598830 TGGAATCTACAATCTACACCTCTCC 59.401 44.000 0.00 0.00 0.00 3.71
2361 2502 5.598830 GGAATCTACAATCTACACCTCTCCA 59.401 44.000 0.00 0.00 0.00 3.86
2362 2503 6.098409 GGAATCTACAATCTACACCTCTCCAA 59.902 42.308 0.00 0.00 0.00 3.53
2363 2504 7.364762 GGAATCTACAATCTACACCTCTCCAAA 60.365 40.741 0.00 0.00 0.00 3.28
2364 2505 6.282199 TCTACAATCTACACCTCTCCAAAC 57.718 41.667 0.00 0.00 0.00 2.93
2365 2506 4.974645 ACAATCTACACCTCTCCAAACA 57.025 40.909 0.00 0.00 0.00 2.83
2366 2507 4.642429 ACAATCTACACCTCTCCAAACAC 58.358 43.478 0.00 0.00 0.00 3.32
2367 2508 4.102524 ACAATCTACACCTCTCCAAACACA 59.897 41.667 0.00 0.00 0.00 3.72
2368 2509 4.974645 ATCTACACCTCTCCAAACACAA 57.025 40.909 0.00 0.00 0.00 3.33
2369 2510 4.764050 TCTACACCTCTCCAAACACAAA 57.236 40.909 0.00 0.00 0.00 2.83
2370 2511 4.448210 TCTACACCTCTCCAAACACAAAC 58.552 43.478 0.00 0.00 0.00 2.93
2371 2512 2.014128 ACACCTCTCCAAACACAAACG 58.986 47.619 0.00 0.00 0.00 3.60
2372 2513 1.021968 ACCTCTCCAAACACAAACGC 58.978 50.000 0.00 0.00 0.00 4.84
2373 2514 0.041312 CCTCTCCAAACACAAACGCG 60.041 55.000 3.53 3.53 0.00 6.01
2374 2515 0.934496 CTCTCCAAACACAAACGCGA 59.066 50.000 15.93 0.00 0.00 5.87
2375 2516 1.531149 CTCTCCAAACACAAACGCGAT 59.469 47.619 15.93 0.00 0.00 4.58
2376 2517 2.734606 CTCTCCAAACACAAACGCGATA 59.265 45.455 15.93 0.00 0.00 2.92
2377 2518 3.331150 TCTCCAAACACAAACGCGATAT 58.669 40.909 15.93 0.00 0.00 1.63
2378 2519 3.369756 TCTCCAAACACAAACGCGATATC 59.630 43.478 15.93 0.00 0.00 1.63
2379 2520 3.331150 TCCAAACACAAACGCGATATCT 58.669 40.909 15.93 0.00 0.00 1.98
2380 2521 3.749088 TCCAAACACAAACGCGATATCTT 59.251 39.130 15.93 0.00 0.00 2.40
2381 2522 3.845775 CCAAACACAAACGCGATATCTTG 59.154 43.478 15.93 10.35 0.00 3.02
2382 2523 4.377943 CCAAACACAAACGCGATATCTTGA 60.378 41.667 15.93 0.00 0.00 3.02
2383 2524 4.584029 AACACAAACGCGATATCTTGAG 57.416 40.909 15.93 9.01 0.00 3.02
2384 2525 3.585862 ACACAAACGCGATATCTTGAGT 58.414 40.909 15.93 9.62 0.00 3.41
2385 2526 4.740268 ACACAAACGCGATATCTTGAGTA 58.260 39.130 15.93 0.00 0.00 2.59
2386 2527 4.561606 ACACAAACGCGATATCTTGAGTAC 59.438 41.667 15.93 0.00 0.00 2.73
2387 2528 4.026804 CACAAACGCGATATCTTGAGTACC 60.027 45.833 15.93 0.00 0.00 3.34
2388 2529 3.366440 AACGCGATATCTTGAGTACCC 57.634 47.619 15.93 0.00 0.00 3.69
2389 2530 1.266175 ACGCGATATCTTGAGTACCCG 59.734 52.381 15.93 0.00 0.00 5.28
2404 2545 0.033796 ACCCGGAGAAGGATACACGA 60.034 55.000 0.73 0.00 41.41 4.35
2418 2559 5.046591 AGGATACACGAAGAGGATTCAAACA 60.047 40.000 0.00 0.00 41.41 2.83
2451 2592 6.817765 ACAACACAATACTTCCCATTACAG 57.182 37.500 0.00 0.00 0.00 2.74
2540 2691 5.435291 CTTGTGCTCAAGGAGGATAATTCT 58.565 41.667 18.64 0.00 45.02 2.40
2557 2708 1.521010 CTGACAGGCTGCTCATCGG 60.521 63.158 15.89 5.82 0.00 4.18
2562 2713 4.899239 GGCTGCTCATCGGGACCG 62.899 72.222 3.96 3.96 41.35 4.79
2590 2741 0.105039 GTCTGACCGGCTAGGAATGG 59.895 60.000 0.00 0.00 45.00 3.16
2595 2746 2.029666 CGGCTAGGAATGGCCTCG 59.970 66.667 3.32 0.00 46.97 4.63
2606 2757 4.097361 GGCCTCGGGGTGGTCTTC 62.097 72.222 1.62 0.00 34.45 2.87
2607 2758 3.003763 GCCTCGGGGTGGTCTTCT 61.004 66.667 1.62 0.00 34.45 2.85
2612 2763 1.374252 CGGGGTGGTCTTCTTGACG 60.374 63.158 0.00 0.00 46.24 4.35
2618 2769 1.376037 GGTCTTCTTGACGCTGGGG 60.376 63.158 0.00 0.00 46.24 4.96
2619 2770 1.671742 GTCTTCTTGACGCTGGGGA 59.328 57.895 0.00 0.00 35.81 4.81
2620 2771 0.390472 GTCTTCTTGACGCTGGGGAG 60.390 60.000 0.00 0.00 35.81 4.30
2621 2772 1.743252 CTTCTTGACGCTGGGGAGC 60.743 63.158 0.00 0.00 0.00 4.70
2623 2774 1.768684 TTCTTGACGCTGGGGAGCTT 61.769 55.000 0.00 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.557061 GTCTCGGTCTATATGTATACATGGATA 57.443 37.037 25.48 15.76 37.15 2.59
15 16 8.275758 AGTCTCGGTCTATATGTATACATGGAT 58.724 37.037 25.48 15.50 37.15 3.41
16 17 7.631007 AGTCTCGGTCTATATGTATACATGGA 58.369 38.462 25.48 17.49 37.15 3.41
17 18 7.867305 AGTCTCGGTCTATATGTATACATGG 57.133 40.000 25.48 15.80 37.15 3.66
20 21 9.379791 CACATAGTCTCGGTCTATATGTATACA 57.620 37.037 8.27 8.27 35.79 2.29
21 22 8.828644 CCACATAGTCTCGGTCTATATGTATAC 58.171 40.741 0.00 0.00 35.79 1.47
34 35 0.103208 GTGCCTCCACATAGTCTCGG 59.897 60.000 0.00 0.00 41.67 4.63
35 36 0.817654 TGTGCCTCCACATAGTCTCG 59.182 55.000 0.00 0.00 46.51 4.04
44 45 1.999071 TTTTGCGTGTGTGCCTCCAC 61.999 55.000 0.00 0.00 42.40 4.02
45 46 1.750780 TTTTGCGTGTGTGCCTCCA 60.751 52.632 0.00 0.00 0.00 3.86
65 66 3.704061 AGCTTGTCATCTAGGAGGACTTC 59.296 47.826 12.34 3.57 42.77 3.01
66 67 3.718723 AGCTTGTCATCTAGGAGGACTT 58.281 45.455 12.34 0.00 42.77 3.01
67 68 3.396685 AGCTTGTCATCTAGGAGGACT 57.603 47.619 12.34 0.00 42.77 3.85
119 120 5.713025 CCAAAGCAACATAACAACTAGCAT 58.287 37.500 0.00 0.00 0.00 3.79
128 129 0.885196 TCCCGCCAAAGCAACATAAC 59.115 50.000 0.00 0.00 39.83 1.89
142 143 2.650778 CAAAGTTTGCCCTCCCGC 59.349 61.111 1.96 0.00 0.00 6.13
144 145 1.128200 AAACCAAAGTTTGCCCTCCC 58.872 50.000 10.25 0.00 44.57 4.30
154 155 3.275143 TCGACACATGACAAACCAAAGT 58.725 40.909 0.00 0.00 0.00 2.66
160 161 2.869801 TGGTCTTCGACACATGACAAAC 59.130 45.455 0.00 0.00 33.68 2.93
166 167 4.053983 CAGGATATGGTCTTCGACACATG 58.946 47.826 0.00 0.00 33.68 3.21
183 187 2.821969 GCAACAAGTCACAATCCAGGAT 59.178 45.455 0.00 0.00 0.00 3.24
205 209 7.232737 AGCTATAGTACATAACAGCCACACATA 59.767 37.037 0.84 0.00 0.00 2.29
246 250 9.537852 TCTTTACAGAGGGAGTACATAACTAAA 57.462 33.333 0.00 0.00 39.07 1.85
257 261 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
258 262 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
259 263 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
260 264 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
261 265 8.138712 AGACGCTCTTATATTTCTTTACAGAGG 58.861 37.037 0.00 0.00 0.00 3.69
268 272 9.685828 GTGATCTAGACGCTCTTATATTTCTTT 57.314 33.333 0.00 0.00 0.00 2.52
269 273 9.073475 AGTGATCTAGACGCTCTTATATTTCTT 57.927 33.333 0.00 0.00 0.00 2.52
270 274 8.630054 AGTGATCTAGACGCTCTTATATTTCT 57.370 34.615 0.00 0.00 0.00 2.52
274 278 9.509956 ACTTTAGTGATCTAGACGCTCTTATAT 57.490 33.333 10.41 0.00 0.00 0.86
275 279 8.905660 ACTTTAGTGATCTAGACGCTCTTATA 57.094 34.615 10.41 0.00 0.00 0.98
276 280 7.811117 ACTTTAGTGATCTAGACGCTCTTAT 57.189 36.000 10.41 0.00 0.00 1.73
277 281 8.728337 TTACTTTAGTGATCTAGACGCTCTTA 57.272 34.615 10.41 0.00 0.00 2.10
278 282 7.627298 TTACTTTAGTGATCTAGACGCTCTT 57.373 36.000 10.41 0.00 0.00 2.85
279 283 7.499563 TCATTACTTTAGTGATCTAGACGCTCT 59.500 37.037 10.41 7.61 0.00 4.09
280 284 7.640852 TCATTACTTTAGTGATCTAGACGCTC 58.359 38.462 10.41 0.00 0.00 5.03
281 285 7.569639 TCATTACTTTAGTGATCTAGACGCT 57.430 36.000 0.00 4.20 0.00 5.07
282 286 7.539366 GGATCATTACTTTAGTGATCTAGACGC 59.461 40.741 14.68 0.00 45.68 5.19
283 287 8.568794 TGGATCATTACTTTAGTGATCTAGACG 58.431 37.037 14.68 0.00 45.68 4.18
288 292 9.606631 GTCTTTGGATCATTACTTTAGTGATCT 57.393 33.333 14.68 0.00 45.68 2.75
289 293 9.606631 AGTCTTTGGATCATTACTTTAGTGATC 57.393 33.333 9.20 9.20 45.67 2.92
290 294 9.606631 GAGTCTTTGGATCATTACTTTAGTGAT 57.393 33.333 0.00 0.00 37.77 3.06
291 295 8.816894 AGAGTCTTTGGATCATTACTTTAGTGA 58.183 33.333 0.00 0.00 0.00 3.41
292 296 9.442047 AAGAGTCTTTGGATCATTACTTTAGTG 57.558 33.333 0.00 0.00 0.00 2.74
324 328 9.607988 TGTTGTTCATTACTTTCTCTGTAAAGA 57.392 29.630 10.65 0.00 38.50 2.52
325 329 9.651718 GTGTTGTTCATTACTTTCTCTGTAAAG 57.348 33.333 0.00 0.00 41.35 1.85
326 330 8.617809 GGTGTTGTTCATTACTTTCTCTGTAAA 58.382 33.333 0.00 0.00 34.20 2.01
327 331 7.771361 TGGTGTTGTTCATTACTTTCTCTGTAA 59.229 33.333 0.00 0.00 34.87 2.41
328 332 7.276658 TGGTGTTGTTCATTACTTTCTCTGTA 58.723 34.615 0.00 0.00 0.00 2.74
329 333 6.119536 TGGTGTTGTTCATTACTTTCTCTGT 58.880 36.000 0.00 0.00 0.00 3.41
330 334 6.618287 TGGTGTTGTTCATTACTTTCTCTG 57.382 37.500 0.00 0.00 0.00 3.35
331 335 6.772716 ACATGGTGTTGTTCATTACTTTCTCT 59.227 34.615 0.00 0.00 0.00 3.10
332 336 6.970484 ACATGGTGTTGTTCATTACTTTCTC 58.030 36.000 0.00 0.00 0.00 2.87
333 337 6.016276 GGACATGGTGTTGTTCATTACTTTCT 60.016 38.462 0.00 0.00 0.00 2.52
334 338 6.016276 AGGACATGGTGTTGTTCATTACTTTC 60.016 38.462 0.00 0.00 0.00 2.62
335 339 5.833131 AGGACATGGTGTTGTTCATTACTTT 59.167 36.000 0.00 0.00 0.00 2.66
336 340 5.385198 AGGACATGGTGTTGTTCATTACTT 58.615 37.500 0.00 0.00 0.00 2.24
337 341 4.985538 AGGACATGGTGTTGTTCATTACT 58.014 39.130 0.00 0.00 0.00 2.24
338 342 5.009610 ACAAGGACATGGTGTTGTTCATTAC 59.990 40.000 0.00 0.00 28.62 1.89
339 343 5.136828 ACAAGGACATGGTGTTGTTCATTA 58.863 37.500 0.00 0.00 28.62 1.90
367 371 8.721478 CATACTTCATAACAACAACAACTAGCT 58.279 33.333 0.00 0.00 0.00 3.32
381 385 5.122239 TGCACTGCAGTTCATACTTCATAAC 59.878 40.000 18.94 0.00 33.32 1.89
382 386 5.122239 GTGCACTGCAGTTCATACTTCATAA 59.878 40.000 21.95 0.00 40.08 1.90
383 387 4.631377 GTGCACTGCAGTTCATACTTCATA 59.369 41.667 21.95 0.00 40.08 2.15
384 388 3.438087 GTGCACTGCAGTTCATACTTCAT 59.562 43.478 21.95 0.00 40.08 2.57
385 389 2.807967 GTGCACTGCAGTTCATACTTCA 59.192 45.455 21.95 5.32 40.08 3.02
423 427 6.148811 TGGTGTAGTTCATAAAAGCAACTAGC 59.851 38.462 0.00 0.00 46.19 3.42
424 428 7.667043 TGGTGTAGTTCATAAAAGCAACTAG 57.333 36.000 0.00 0.00 34.12 2.57
425 429 7.663905 ACATGGTGTAGTTCATAAAAGCAACTA 59.336 33.333 0.00 0.00 32.56 2.24
426 430 6.490040 ACATGGTGTAGTTCATAAAAGCAACT 59.510 34.615 0.00 0.00 34.68 3.16
427 431 6.677913 ACATGGTGTAGTTCATAAAAGCAAC 58.322 36.000 0.00 0.00 0.00 4.17
428 432 6.488344 TGACATGGTGTAGTTCATAAAAGCAA 59.512 34.615 0.00 0.00 0.00 3.91
429 433 6.000840 TGACATGGTGTAGTTCATAAAAGCA 58.999 36.000 0.00 0.00 0.00 3.91
430 434 6.494893 TGACATGGTGTAGTTCATAAAAGC 57.505 37.500 0.00 0.00 0.00 3.51
431 435 8.514594 ACAATGACATGGTGTAGTTCATAAAAG 58.485 33.333 0.00 0.00 0.00 2.27
432 436 8.402798 ACAATGACATGGTGTAGTTCATAAAA 57.597 30.769 0.00 0.00 0.00 1.52
433 437 7.994425 ACAATGACATGGTGTAGTTCATAAA 57.006 32.000 0.00 0.00 0.00 1.40
434 438 7.994425 AACAATGACATGGTGTAGTTCATAA 57.006 32.000 0.00 0.00 0.00 1.90
436 440 9.851686 ATATAACAATGACATGGTGTAGTTCAT 57.148 29.630 0.00 0.00 0.00 2.57
437 441 9.679661 AATATAACAATGACATGGTGTAGTTCA 57.320 29.630 0.00 0.00 0.00 3.18
440 444 9.905713 AGAAATATAACAATGACATGGTGTAGT 57.094 29.630 0.00 0.00 0.00 2.73
443 447 9.859427 CAAAGAAATATAACAATGACATGGTGT 57.141 29.630 0.00 0.00 0.00 4.16
444 448 9.304731 CCAAAGAAATATAACAATGACATGGTG 57.695 33.333 0.00 0.00 0.00 4.17
445 449 7.981225 GCCAAAGAAATATAACAATGACATGGT 59.019 33.333 0.00 0.00 0.00 3.55
446 450 8.199449 AGCCAAAGAAATATAACAATGACATGG 58.801 33.333 0.00 0.00 0.00 3.66
447 451 9.027129 CAGCCAAAGAAATATAACAATGACATG 57.973 33.333 0.00 0.00 0.00 3.21
448 452 8.199449 CCAGCCAAAGAAATATAACAATGACAT 58.801 33.333 0.00 0.00 0.00 3.06
449 453 7.395772 TCCAGCCAAAGAAATATAACAATGACA 59.604 33.333 0.00 0.00 0.00 3.58
520 527 7.043590 GCTTTCAGCATAAATAAGCAGACAATG 60.044 37.037 0.00 0.00 41.89 2.82
554 562 7.992141 GGATTTCCCAATAGCGAGCTAAGCT 62.992 48.000 18.48 18.48 40.73 3.74
717 739 6.348786 CCATGTTGATCTGTTCGACTTTGAAT 60.349 38.462 7.44 0.00 39.23 2.57
795 817 3.323243 GTGCTACTTGTACATCGGTTGT 58.677 45.455 0.00 0.00 42.62 3.32
817 839 3.001856 CGCATGCGTGTGATTGTTAATTG 60.002 43.478 31.33 0.00 38.10 2.32
855 877 6.315714 AGCCACATGATACTGGTAGTAGTAT 58.684 40.000 0.00 0.00 44.38 2.12
909 994 3.058218 TGCATTGCACGCCCATTT 58.942 50.000 7.38 0.00 31.71 2.32
918 1003 3.304721 GGCTGGTGGTGCATTGCA 61.305 61.111 7.38 7.38 35.60 4.08
935 1020 3.119602 TGTTTACTAGCACGGTAGCTCTG 60.120 47.826 8.07 6.29 45.26 3.35
946 1031 2.861335 CGTGTGTGTGTGTTTACTAGCA 59.139 45.455 0.00 0.00 0.00 3.49
998 1085 2.338015 CCGCTGAGTGCTGCCATTT 61.338 57.895 0.00 0.00 40.11 2.32
1019 1106 1.592669 GCCTCGATGTCGTCCATGG 60.593 63.158 4.97 4.97 40.80 3.66
1021 1108 1.439228 CTGCCTCGATGTCGTCCAT 59.561 57.895 2.04 0.00 40.80 3.41
1623 1710 4.211374 CCCGTCTGTATGCTTGCTAATTAC 59.789 45.833 0.00 0.00 0.00 1.89
1643 1731 2.032071 GACCCACAACTGACCCCG 59.968 66.667 0.00 0.00 0.00 5.73
1699 1787 5.439721 TCCAGTGGTCTATCATTCCATTTG 58.560 41.667 9.54 0.00 33.68 2.32
1854 1976 5.184671 TCTCTCCTTCGTTCCCTAAAACTAC 59.815 44.000 0.00 0.00 0.00 2.73
2002 2127 0.872388 ATGCTTTCGACACCGGTTTC 59.128 50.000 2.97 7.76 36.24 2.78
2028 2153 4.164981 ACTGGTACAAATCTGGTCTACCA 58.835 43.478 1.13 1.13 40.92 3.25
2033 2158 6.313905 CACAATAGACTGGTACAAATCTGGTC 59.686 42.308 0.00 0.00 38.70 4.02
2156 2297 2.419297 GGACGAAGATGAGGACATTGCT 60.419 50.000 0.00 0.00 36.82 3.91
2191 2332 6.488006 AGCCATTCAGCTTTGTTATCGATTAT 59.512 34.615 1.71 0.00 41.41 1.28
2193 2334 4.641989 AGCCATTCAGCTTTGTTATCGATT 59.358 37.500 1.71 0.00 41.41 3.34
2194 2335 4.202441 AGCCATTCAGCTTTGTTATCGAT 58.798 39.130 2.16 2.16 41.41 3.59
2195 2336 3.609853 AGCCATTCAGCTTTGTTATCGA 58.390 40.909 0.00 0.00 41.41 3.59
2217 2358 3.501349 TGGATGGAATTGGACCGAAAAA 58.499 40.909 0.00 0.00 0.00 1.94
2218 2359 3.162147 TGGATGGAATTGGACCGAAAA 57.838 42.857 0.00 0.00 0.00 2.29
2219 2360 2.889170 TGGATGGAATTGGACCGAAA 57.111 45.000 0.00 0.00 0.00 3.46
2220 2361 3.380471 AATGGATGGAATTGGACCGAA 57.620 42.857 0.00 0.00 0.00 4.30
2221 2362 3.380471 AAATGGATGGAATTGGACCGA 57.620 42.857 0.00 0.00 0.00 4.69
2222 2363 4.183101 CAAAAATGGATGGAATTGGACCG 58.817 43.478 0.00 0.00 0.00 4.79
2223 2364 5.164620 ACAAAAATGGATGGAATTGGACC 57.835 39.130 0.00 0.00 0.00 4.46
2224 2365 6.229733 TCAACAAAAATGGATGGAATTGGAC 58.770 36.000 0.00 0.00 0.00 4.02
2225 2366 6.430962 TCAACAAAAATGGATGGAATTGGA 57.569 33.333 0.00 0.00 0.00 3.53
2226 2367 5.644636 CCTCAACAAAAATGGATGGAATTGG 59.355 40.000 0.00 0.00 0.00 3.16
2227 2368 5.122711 GCCTCAACAAAAATGGATGGAATTG 59.877 40.000 0.00 0.00 0.00 2.32
2228 2369 5.221884 TGCCTCAACAAAAATGGATGGAATT 60.222 36.000 0.00 0.00 0.00 2.17
2229 2370 4.286549 TGCCTCAACAAAAATGGATGGAAT 59.713 37.500 0.00 0.00 0.00 3.01
2230 2371 3.645212 TGCCTCAACAAAAATGGATGGAA 59.355 39.130 0.00 0.00 0.00 3.53
2231 2372 3.237746 TGCCTCAACAAAAATGGATGGA 58.762 40.909 0.00 0.00 0.00 3.41
2232 2373 3.681593 TGCCTCAACAAAAATGGATGG 57.318 42.857 0.00 0.00 0.00 3.51
2233 2374 5.935789 AGAATTGCCTCAACAAAAATGGATG 59.064 36.000 0.00 0.00 32.27 3.51
2234 2375 6.117975 AGAATTGCCTCAACAAAAATGGAT 57.882 33.333 0.00 0.00 32.27 3.41
2235 2376 5.549742 AGAATTGCCTCAACAAAAATGGA 57.450 34.783 0.00 0.00 32.27 3.41
2236 2377 6.930722 AGTAAGAATTGCCTCAACAAAAATGG 59.069 34.615 0.00 0.00 32.27 3.16
2237 2378 7.951530 AGTAAGAATTGCCTCAACAAAAATG 57.048 32.000 0.00 0.00 32.27 2.32
2238 2379 7.986889 ACAAGTAAGAATTGCCTCAACAAAAAT 59.013 29.630 0.00 0.00 32.27 1.82
2239 2380 7.327214 ACAAGTAAGAATTGCCTCAACAAAAA 58.673 30.769 0.00 0.00 32.27 1.94
2240 2381 6.872920 ACAAGTAAGAATTGCCTCAACAAAA 58.127 32.000 0.00 0.00 32.27 2.44
2241 2382 6.463995 ACAAGTAAGAATTGCCTCAACAAA 57.536 33.333 0.00 0.00 32.27 2.83
2242 2383 6.096141 TGAACAAGTAAGAATTGCCTCAACAA 59.904 34.615 0.00 0.00 0.00 2.83
2243 2384 5.592282 TGAACAAGTAAGAATTGCCTCAACA 59.408 36.000 0.00 0.00 0.00 3.33
2244 2385 6.072112 TGAACAAGTAAGAATTGCCTCAAC 57.928 37.500 0.00 0.00 0.00 3.18
2245 2386 6.348458 CGATGAACAAGTAAGAATTGCCTCAA 60.348 38.462 0.00 0.00 30.87 3.02
2246 2387 5.122239 CGATGAACAAGTAAGAATTGCCTCA 59.878 40.000 0.00 0.00 31.34 3.86
2247 2388 5.447818 CCGATGAACAAGTAAGAATTGCCTC 60.448 44.000 0.00 0.00 0.00 4.70
2248 2389 4.396166 CCGATGAACAAGTAAGAATTGCCT 59.604 41.667 0.00 0.00 0.00 4.75
2249 2390 4.438744 CCCGATGAACAAGTAAGAATTGCC 60.439 45.833 0.00 0.00 0.00 4.52
2250 2391 4.394920 TCCCGATGAACAAGTAAGAATTGC 59.605 41.667 0.00 0.00 0.00 3.56
2251 2392 6.149474 ACTTCCCGATGAACAAGTAAGAATTG 59.851 38.462 0.00 0.00 0.00 2.32
2252 2393 6.149474 CACTTCCCGATGAACAAGTAAGAATT 59.851 38.462 0.00 0.00 0.00 2.17
2253 2394 5.643777 CACTTCCCGATGAACAAGTAAGAAT 59.356 40.000 0.00 0.00 0.00 2.40
2254 2395 4.994852 CACTTCCCGATGAACAAGTAAGAA 59.005 41.667 0.00 0.00 0.00 2.52
2255 2396 4.282449 TCACTTCCCGATGAACAAGTAAGA 59.718 41.667 0.00 0.00 0.00 2.10
2256 2397 4.566004 TCACTTCCCGATGAACAAGTAAG 58.434 43.478 0.00 0.00 0.00 2.34
2257 2398 4.610605 TCACTTCCCGATGAACAAGTAA 57.389 40.909 0.00 0.00 0.00 2.24
2258 2399 4.466370 AGATCACTTCCCGATGAACAAGTA 59.534 41.667 0.00 0.00 0.00 2.24
2259 2400 3.261897 AGATCACTTCCCGATGAACAAGT 59.738 43.478 0.00 0.00 0.00 3.16
2260 2401 3.866651 AGATCACTTCCCGATGAACAAG 58.133 45.455 0.00 0.00 0.00 3.16
2261 2402 3.981071 AGATCACTTCCCGATGAACAA 57.019 42.857 0.00 0.00 0.00 2.83
2262 2403 3.181475 GCTAGATCACTTCCCGATGAACA 60.181 47.826 0.00 0.00 0.00 3.18
2263 2404 3.068873 AGCTAGATCACTTCCCGATGAAC 59.931 47.826 0.00 0.00 0.00 3.18
2264 2405 3.300388 AGCTAGATCACTTCCCGATGAA 58.700 45.455 0.00 0.00 0.00 2.57
2265 2406 2.887783 GAGCTAGATCACTTCCCGATGA 59.112 50.000 2.36 0.00 0.00 2.92
2266 2407 2.029470 GGAGCTAGATCACTTCCCGATG 60.029 54.545 10.68 0.00 0.00 3.84
2267 2408 2.158385 AGGAGCTAGATCACTTCCCGAT 60.158 50.000 10.68 0.00 0.00 4.18
2268 2409 1.215673 AGGAGCTAGATCACTTCCCGA 59.784 52.381 10.68 0.00 0.00 5.14
2269 2410 1.339610 CAGGAGCTAGATCACTTCCCG 59.660 57.143 10.68 0.00 0.00 5.14
2270 2411 2.627699 CTCAGGAGCTAGATCACTTCCC 59.372 54.545 10.68 0.00 0.00 3.97
2271 2412 3.561143 TCTCAGGAGCTAGATCACTTCC 58.439 50.000 10.68 0.00 0.00 3.46
2272 2413 8.623903 CATATATCTCAGGAGCTAGATCACTTC 58.376 40.741 10.68 0.00 34.36 3.01
2273 2414 8.335484 TCATATATCTCAGGAGCTAGATCACTT 58.665 37.037 10.68 0.00 34.36 3.16
2274 2415 7.775093 GTCATATATCTCAGGAGCTAGATCACT 59.225 40.741 10.68 1.76 34.36 3.41
2275 2416 7.555914 TGTCATATATCTCAGGAGCTAGATCAC 59.444 40.741 10.68 0.00 34.36 3.06
2276 2417 7.637511 TGTCATATATCTCAGGAGCTAGATCA 58.362 38.462 10.68 0.00 34.36 2.92
2277 2418 8.696043 ATGTCATATATCTCAGGAGCTAGATC 57.304 38.462 0.00 0.00 34.36 2.75
2278 2419 9.135189 GAATGTCATATATCTCAGGAGCTAGAT 57.865 37.037 0.00 2.42 36.45 1.98
2279 2420 8.335484 AGAATGTCATATATCTCAGGAGCTAGA 58.665 37.037 0.00 0.00 0.00 2.43
2280 2421 8.523915 AGAATGTCATATATCTCAGGAGCTAG 57.476 38.462 0.00 0.00 0.00 3.42
2281 2422 8.891985 AAGAATGTCATATATCTCAGGAGCTA 57.108 34.615 0.00 0.00 0.00 3.32
2282 2423 7.795534 AAGAATGTCATATATCTCAGGAGCT 57.204 36.000 0.00 0.00 0.00 4.09
2299 2440 9.413734 CCAGGAAAAGATAAGGATAAAGAATGT 57.586 33.333 0.00 0.00 0.00 2.71
2300 2441 9.413734 ACCAGGAAAAGATAAGGATAAAGAATG 57.586 33.333 0.00 0.00 0.00 2.67
2301 2442 9.634021 GACCAGGAAAAGATAAGGATAAAGAAT 57.366 33.333 0.00 0.00 0.00 2.40
2302 2443 8.836735 AGACCAGGAAAAGATAAGGATAAAGAA 58.163 33.333 0.00 0.00 0.00 2.52
2303 2444 8.393959 AGACCAGGAAAAGATAAGGATAAAGA 57.606 34.615 0.00 0.00 0.00 2.52
2304 2445 9.114952 GAAGACCAGGAAAAGATAAGGATAAAG 57.885 37.037 0.00 0.00 0.00 1.85
2305 2446 8.836735 AGAAGACCAGGAAAAGATAAGGATAAA 58.163 33.333 0.00 0.00 0.00 1.40
2306 2447 8.393959 AGAAGACCAGGAAAAGATAAGGATAA 57.606 34.615 0.00 0.00 0.00 1.75
2307 2448 7.996758 AGAAGACCAGGAAAAGATAAGGATA 57.003 36.000 0.00 0.00 0.00 2.59
2308 2449 6.899892 AGAAGACCAGGAAAAGATAAGGAT 57.100 37.500 0.00 0.00 0.00 3.24
2309 2450 6.476378 CAAGAAGACCAGGAAAAGATAAGGA 58.524 40.000 0.00 0.00 0.00 3.36
2310 2451 5.649831 CCAAGAAGACCAGGAAAAGATAAGG 59.350 44.000 0.00 0.00 0.00 2.69
2311 2452 5.124617 GCCAAGAAGACCAGGAAAAGATAAG 59.875 44.000 0.00 0.00 0.00 1.73
2312 2453 5.010282 GCCAAGAAGACCAGGAAAAGATAA 58.990 41.667 0.00 0.00 0.00 1.75
2313 2454 4.289672 AGCCAAGAAGACCAGGAAAAGATA 59.710 41.667 0.00 0.00 0.00 1.98
2314 2455 3.075134 AGCCAAGAAGACCAGGAAAAGAT 59.925 43.478 0.00 0.00 0.00 2.40
2315 2456 2.443255 AGCCAAGAAGACCAGGAAAAGA 59.557 45.455 0.00 0.00 0.00 2.52
2316 2457 2.555757 CAGCCAAGAAGACCAGGAAAAG 59.444 50.000 0.00 0.00 0.00 2.27
2317 2458 2.586425 CAGCCAAGAAGACCAGGAAAA 58.414 47.619 0.00 0.00 0.00 2.29
2318 2459 1.202927 CCAGCCAAGAAGACCAGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
2319 2460 0.401738 CCAGCCAAGAAGACCAGGAA 59.598 55.000 0.00 0.00 0.00 3.36
2320 2461 0.473694 TCCAGCCAAGAAGACCAGGA 60.474 55.000 0.00 0.00 0.00 3.86
2321 2462 0.401738 TTCCAGCCAAGAAGACCAGG 59.598 55.000 0.00 0.00 0.00 4.45
2322 2463 2.026449 AGATTCCAGCCAAGAAGACCAG 60.026 50.000 0.00 0.00 0.00 4.00
2323 2464 1.988107 AGATTCCAGCCAAGAAGACCA 59.012 47.619 0.00 0.00 0.00 4.02
2324 2465 2.797177 AGATTCCAGCCAAGAAGACC 57.203 50.000 0.00 0.00 0.00 3.85
2325 2466 4.207891 TGTAGATTCCAGCCAAGAAGAC 57.792 45.455 0.00 0.00 0.00 3.01
2326 2467 4.908601 TTGTAGATTCCAGCCAAGAAGA 57.091 40.909 0.00 0.00 0.00 2.87
2327 2468 5.435291 AGATTGTAGATTCCAGCCAAGAAG 58.565 41.667 0.00 0.00 0.00 2.85
2328 2469 5.441718 AGATTGTAGATTCCAGCCAAGAA 57.558 39.130 0.00 0.00 0.00 2.52
2329 2470 5.425217 TGTAGATTGTAGATTCCAGCCAAGA 59.575 40.000 0.00 0.00 0.00 3.02
2330 2471 5.525378 GTGTAGATTGTAGATTCCAGCCAAG 59.475 44.000 0.00 0.00 0.00 3.61
2331 2472 5.428253 GTGTAGATTGTAGATTCCAGCCAA 58.572 41.667 0.00 0.00 0.00 4.52
2332 2473 4.141711 GGTGTAGATTGTAGATTCCAGCCA 60.142 45.833 0.00 0.00 0.00 4.75
2333 2474 4.101741 AGGTGTAGATTGTAGATTCCAGCC 59.898 45.833 0.00 0.00 0.00 4.85
2334 2475 5.069781 AGAGGTGTAGATTGTAGATTCCAGC 59.930 44.000 0.00 0.00 0.00 4.85
2335 2476 6.239176 GGAGAGGTGTAGATTGTAGATTCCAG 60.239 46.154 0.00 0.00 0.00 3.86
2336 2477 5.598830 GGAGAGGTGTAGATTGTAGATTCCA 59.401 44.000 0.00 0.00 0.00 3.53
2337 2478 5.598830 TGGAGAGGTGTAGATTGTAGATTCC 59.401 44.000 0.00 0.00 0.00 3.01
2338 2479 6.716934 TGGAGAGGTGTAGATTGTAGATTC 57.283 41.667 0.00 0.00 0.00 2.52
2339 2480 7.038302 TGTTTGGAGAGGTGTAGATTGTAGATT 60.038 37.037 0.00 0.00 0.00 2.40
2340 2481 6.440647 TGTTTGGAGAGGTGTAGATTGTAGAT 59.559 38.462 0.00 0.00 0.00 1.98
2341 2482 5.778241 TGTTTGGAGAGGTGTAGATTGTAGA 59.222 40.000 0.00 0.00 0.00 2.59
2342 2483 5.869888 GTGTTTGGAGAGGTGTAGATTGTAG 59.130 44.000 0.00 0.00 0.00 2.74
2343 2484 5.305902 TGTGTTTGGAGAGGTGTAGATTGTA 59.694 40.000 0.00 0.00 0.00 2.41
2344 2485 4.102524 TGTGTTTGGAGAGGTGTAGATTGT 59.897 41.667 0.00 0.00 0.00 2.71
2345 2486 4.641396 TGTGTTTGGAGAGGTGTAGATTG 58.359 43.478 0.00 0.00 0.00 2.67
2346 2487 4.974645 TGTGTTTGGAGAGGTGTAGATT 57.025 40.909 0.00 0.00 0.00 2.40
2347 2488 4.974645 TTGTGTTTGGAGAGGTGTAGAT 57.025 40.909 0.00 0.00 0.00 1.98
2348 2489 4.448210 GTTTGTGTTTGGAGAGGTGTAGA 58.552 43.478 0.00 0.00 0.00 2.59
2349 2490 3.247648 CGTTTGTGTTTGGAGAGGTGTAG 59.752 47.826 0.00 0.00 0.00 2.74
2350 2491 3.199677 CGTTTGTGTTTGGAGAGGTGTA 58.800 45.455 0.00 0.00 0.00 2.90
2351 2492 2.014128 CGTTTGTGTTTGGAGAGGTGT 58.986 47.619 0.00 0.00 0.00 4.16
2352 2493 1.268539 GCGTTTGTGTTTGGAGAGGTG 60.269 52.381 0.00 0.00 0.00 4.00
2353 2494 1.021968 GCGTTTGTGTTTGGAGAGGT 58.978 50.000 0.00 0.00 0.00 3.85
2354 2495 0.041312 CGCGTTTGTGTTTGGAGAGG 60.041 55.000 0.00 0.00 0.00 3.69
2355 2496 0.934496 TCGCGTTTGTGTTTGGAGAG 59.066 50.000 5.77 0.00 0.00 3.20
2356 2497 1.588674 ATCGCGTTTGTGTTTGGAGA 58.411 45.000 5.77 0.00 0.00 3.71
2357 2498 3.370978 AGATATCGCGTTTGTGTTTGGAG 59.629 43.478 5.77 0.00 0.00 3.86
2358 2499 3.331150 AGATATCGCGTTTGTGTTTGGA 58.669 40.909 5.77 0.00 0.00 3.53
2359 2500 3.740044 AGATATCGCGTTTGTGTTTGG 57.260 42.857 5.77 0.00 0.00 3.28
2360 2501 4.707563 TCAAGATATCGCGTTTGTGTTTG 58.292 39.130 5.77 4.26 0.00 2.93
2361 2502 4.451096 ACTCAAGATATCGCGTTTGTGTTT 59.549 37.500 5.77 0.00 0.00 2.83
2362 2503 3.994392 ACTCAAGATATCGCGTTTGTGTT 59.006 39.130 5.77 0.00 0.00 3.32
2363 2504 3.585862 ACTCAAGATATCGCGTTTGTGT 58.414 40.909 5.77 8.58 0.00 3.72
2364 2505 4.026804 GGTACTCAAGATATCGCGTTTGTG 60.027 45.833 5.77 8.01 0.00 3.33
2365 2506 4.110482 GGTACTCAAGATATCGCGTTTGT 58.890 43.478 5.77 0.00 0.00 2.83
2366 2507 3.489785 GGGTACTCAAGATATCGCGTTTG 59.510 47.826 5.77 4.97 0.00 2.93
2367 2508 3.714391 GGGTACTCAAGATATCGCGTTT 58.286 45.455 5.77 0.00 0.00 3.60
2368 2509 2.287427 CGGGTACTCAAGATATCGCGTT 60.287 50.000 5.77 0.00 0.00 4.84
2369 2510 1.266175 CGGGTACTCAAGATATCGCGT 59.734 52.381 5.77 0.00 0.00 6.01
2370 2511 1.401148 CCGGGTACTCAAGATATCGCG 60.401 57.143 0.00 0.00 0.00 5.87
2371 2512 1.884579 TCCGGGTACTCAAGATATCGC 59.115 52.381 0.00 0.00 0.00 4.58
2372 2513 3.409570 TCTCCGGGTACTCAAGATATCG 58.590 50.000 0.00 0.00 0.00 2.92
2373 2514 4.218852 CCTTCTCCGGGTACTCAAGATATC 59.781 50.000 0.00 0.00 0.00 1.63
2374 2515 4.140994 TCCTTCTCCGGGTACTCAAGATAT 60.141 45.833 0.00 0.00 0.00 1.63
2375 2516 3.203710 TCCTTCTCCGGGTACTCAAGATA 59.796 47.826 0.00 0.00 0.00 1.98
2376 2517 2.024273 TCCTTCTCCGGGTACTCAAGAT 60.024 50.000 0.00 0.00 0.00 2.40
2377 2518 1.356738 TCCTTCTCCGGGTACTCAAGA 59.643 52.381 0.00 0.00 0.00 3.02
2378 2519 1.848652 TCCTTCTCCGGGTACTCAAG 58.151 55.000 0.00 0.00 0.00 3.02
2379 2520 2.544844 ATCCTTCTCCGGGTACTCAA 57.455 50.000 0.00 0.00 0.00 3.02
2380 2521 2.242965 TGTATCCTTCTCCGGGTACTCA 59.757 50.000 0.00 0.00 40.57 3.41
2381 2522 2.622470 GTGTATCCTTCTCCGGGTACTC 59.378 54.545 0.00 0.00 40.57 2.59
2382 2523 2.664015 GTGTATCCTTCTCCGGGTACT 58.336 52.381 0.00 0.00 40.57 2.73
2383 2524 1.336125 CGTGTATCCTTCTCCGGGTAC 59.664 57.143 0.00 0.00 40.38 3.34
2384 2525 1.212688 TCGTGTATCCTTCTCCGGGTA 59.787 52.381 0.00 0.00 0.00 3.69
2385 2526 0.033796 TCGTGTATCCTTCTCCGGGT 60.034 55.000 0.00 0.00 0.00 5.28
2386 2527 1.067212 CTTCGTGTATCCTTCTCCGGG 59.933 57.143 0.00 0.00 0.00 5.73
2387 2528 2.022195 TCTTCGTGTATCCTTCTCCGG 58.978 52.381 0.00 0.00 0.00 5.14
2388 2529 2.033550 CCTCTTCGTGTATCCTTCTCCG 59.966 54.545 0.00 0.00 0.00 4.63
2389 2530 3.288964 TCCTCTTCGTGTATCCTTCTCC 58.711 50.000 0.00 0.00 0.00 3.71
2404 2545 7.939039 TGTAGATGAGTTTGTTTGAATCCTCTT 59.061 33.333 0.00 0.00 0.00 2.85
2418 2559 7.390718 GGGAAGTATTGTGTTGTAGATGAGTTT 59.609 37.037 0.00 0.00 0.00 2.66
2540 2691 2.580815 CCGATGAGCAGCCTGTCA 59.419 61.111 0.00 0.00 0.00 3.58
2562 2713 1.004918 CCGGTCAGACAACCACCTC 60.005 63.158 2.17 0.00 39.43 3.85
2573 2724 1.227674 GCCATTCCTAGCCGGTCAG 60.228 63.158 1.90 0.00 0.00 3.51
2590 2741 2.593956 AAGAAGACCACCCCGAGGC 61.594 63.158 0.00 0.00 36.11 4.70
2595 2746 1.671379 GCGTCAAGAAGACCACCCC 60.671 63.158 0.00 0.00 44.66 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.