Multiple sequence alignment - TraesCS7B01G498300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G498300 chr7B 100.000 2450 0 0 1 2450 749294297 749291848 0.000000e+00 4525
1 TraesCS7B01G498300 chr7B 90.937 331 30 0 1485 1815 748609054 748608724 1.730000e-121 446
2 TraesCS7B01G498300 chr7B 88.000 275 33 0 1485 1759 746744599 746744325 2.350000e-85 326
3 TraesCS7B01G498300 chr7B 76.656 317 64 6 1497 1812 744903264 744903571 1.510000e-37 167
4 TraesCS7B01G498300 chr7B 76.656 317 64 6 1497 1812 745066272 745065965 1.510000e-37 167
5 TraesCS7B01G498300 chr3B 96.094 1485 55 2 1 1485 784154036 784155517 0.000000e+00 2418
6 TraesCS7B01G498300 chr3B 93.248 1481 94 5 4 1484 207054955 207053481 0.000000e+00 2176
7 TraesCS7B01G498300 chr1B 95.087 1486 70 2 1 1486 205500418 205498936 0.000000e+00 2337
8 TraesCS7B01G498300 chr1B 84.498 329 49 2 1489 1816 641605565 641605238 8.450000e-85 324
9 TraesCS7B01G498300 chr3A 92.054 1485 116 2 1 1485 746838596 746840078 0.000000e+00 2087
10 TraesCS7B01G498300 chr3A 91.987 1485 116 3 1 1485 748075881 748077362 0.000000e+00 2080
11 TraesCS7B01G498300 chr3A 85.236 508 62 4 1870 2367 655161730 655161226 6.040000e-141 510
12 TraesCS7B01G498300 chr4A 91.930 1487 116 4 1 1486 490153357 490151874 0.000000e+00 2078
13 TraesCS7B01G498300 chr4A 91.107 506 32 5 1871 2366 740957647 740957145 0.000000e+00 673
14 TraesCS7B01G498300 chr1A 91.790 1486 119 2 1 1484 592539817 592541301 0.000000e+00 2065
15 TraesCS7B01G498300 chr1A 86.068 323 43 2 1489 1810 557130775 557130454 1.800000e-91 346
16 TraesCS7B01G498300 chr6A 89.531 1471 153 1 1 1471 38688268 38686799 0.000000e+00 1862
17 TraesCS7B01G498300 chr2A 89.043 1369 145 5 120 1485 334598797 334600163 0.000000e+00 1692
18 TraesCS7B01G498300 chr2A 89.941 507 38 7 1871 2365 748467119 748466614 2.050000e-180 641
19 TraesCS7B01G498300 chr4B 88.652 564 44 12 1826 2370 588545021 588544459 0.000000e+00 669
20 TraesCS7B01G498300 chr4B 88.007 567 45 15 1826 2370 588576966 588576401 0.000000e+00 649
21 TraesCS7B01G498300 chr4D 88.330 557 50 4 1826 2367 468808105 468807549 0.000000e+00 654
22 TraesCS7B01G498300 chr6B 89.921 506 38 6 1869 2364 508992836 508993338 7.390000e-180 640
23 TraesCS7B01G498300 chr6B 88.462 364 28 4 2015 2367 7717706 7718066 6.260000e-116 427
24 TraesCS7B01G498300 chr5D 86.902 481 41 14 1907 2366 544809851 544809372 1.000000e-143 520
25 TraesCS7B01G498300 chr5D 82.874 508 68 10 1869 2367 542313415 542312918 2.890000e-119 438
26 TraesCS7B01G498300 chr7A 91.239 331 29 0 1485 1815 734889322 734889652 3.720000e-123 451
27 TraesCS7B01G498300 chr7A 82.547 212 36 1 1603 1813 734872754 734872543 4.160000e-43 185
28 TraesCS7B01G498300 chr7D 91.049 324 29 0 1485 1808 632775043 632775366 2.890000e-119 438
29 TraesCS7B01G498300 chr7D 84.894 331 34 5 1485 1815 632444917 632444603 1.090000e-83 320
30 TraesCS7B01G498300 chrUn 88.462 364 28 4 2015 2367 186653600 186653240 6.260000e-116 427
31 TraesCS7B01G498300 chrUn 87.945 365 28 9 2015 2367 338600270 338599910 1.360000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G498300 chr7B 749291848 749294297 2449 True 4525 4525 100.000 1 2450 1 chr7B.!!$R4 2449
1 TraesCS7B01G498300 chr3B 784154036 784155517 1481 False 2418 2418 96.094 1 1485 1 chr3B.!!$F1 1484
2 TraesCS7B01G498300 chr3B 207053481 207054955 1474 True 2176 2176 93.248 4 1484 1 chr3B.!!$R1 1480
3 TraesCS7B01G498300 chr1B 205498936 205500418 1482 True 2337 2337 95.087 1 1486 1 chr1B.!!$R1 1485
4 TraesCS7B01G498300 chr3A 746838596 746840078 1482 False 2087 2087 92.054 1 1485 1 chr3A.!!$F1 1484
5 TraesCS7B01G498300 chr3A 748075881 748077362 1481 False 2080 2080 91.987 1 1485 1 chr3A.!!$F2 1484
6 TraesCS7B01G498300 chr3A 655161226 655161730 504 True 510 510 85.236 1870 2367 1 chr3A.!!$R1 497
7 TraesCS7B01G498300 chr4A 490151874 490153357 1483 True 2078 2078 91.930 1 1486 1 chr4A.!!$R1 1485
8 TraesCS7B01G498300 chr4A 740957145 740957647 502 True 673 673 91.107 1871 2366 1 chr4A.!!$R2 495
9 TraesCS7B01G498300 chr1A 592539817 592541301 1484 False 2065 2065 91.790 1 1484 1 chr1A.!!$F1 1483
10 TraesCS7B01G498300 chr6A 38686799 38688268 1469 True 1862 1862 89.531 1 1471 1 chr6A.!!$R1 1470
11 TraesCS7B01G498300 chr2A 334598797 334600163 1366 False 1692 1692 89.043 120 1485 1 chr2A.!!$F1 1365
12 TraesCS7B01G498300 chr2A 748466614 748467119 505 True 641 641 89.941 1871 2365 1 chr2A.!!$R1 494
13 TraesCS7B01G498300 chr4B 588544459 588545021 562 True 669 669 88.652 1826 2370 1 chr4B.!!$R1 544
14 TraesCS7B01G498300 chr4B 588576401 588576966 565 True 649 649 88.007 1826 2370 1 chr4B.!!$R2 544
15 TraesCS7B01G498300 chr4D 468807549 468808105 556 True 654 654 88.330 1826 2367 1 chr4D.!!$R1 541
16 TraesCS7B01G498300 chr6B 508992836 508993338 502 False 640 640 89.921 1869 2364 1 chr6B.!!$F2 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 517 0.39606 GGGCAATCAAGGCACCAAAA 59.604 50.0 0.0 0.0 35.46 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1558 0.035056 GGTGCTAGTGGTTGGATGCT 60.035 55.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.181786 TTTTTGGGATGCGCCTAAGG 58.818 50.000 4.18 0.00 38.47 2.69
114 115 2.158871 ACTTGTTAAGGCTGGTGTTCGA 60.159 45.455 0.00 0.00 0.00 3.71
122 123 1.305930 GCTGGTGTTCGATGGGGAAC 61.306 60.000 0.00 0.00 45.10 3.62
175 176 1.191489 TCACTGGATGCCTGGACGAA 61.191 55.000 0.00 0.00 0.00 3.85
427 428 6.091849 TGCTCGATCTTCAGATTTCTTTTCAG 59.908 38.462 0.00 0.00 34.37 3.02
516 517 0.396060 GGGCAATCAAGGCACCAAAA 59.604 50.000 0.00 0.00 35.46 2.44
563 564 1.686587 CGTACATGACTGCCTCCCATA 59.313 52.381 0.00 0.00 0.00 2.74
802 803 1.031235 CACTGTGTTGGCAATCACCA 58.969 50.000 21.69 7.19 38.16 4.17
888 892 2.419673 TGTTGCCTCAAAGATACATGCG 59.580 45.455 0.00 0.00 0.00 4.73
909 913 4.921515 GCGTATATCGATTTGGTTCTGCTA 59.078 41.667 1.71 0.00 42.86 3.49
1002 1006 0.319900 CGCCCGGATCAGTCCTTATG 60.320 60.000 0.73 0.00 42.73 1.90
1164 1168 0.249120 TCCGTCATGCCGTGATTCTT 59.751 50.000 0.00 0.00 39.48 2.52
1185 1189 0.321564 CCCGTGATGAAAGGCTGACA 60.322 55.000 0.00 0.00 0.00 3.58
1255 1259 2.768527 TCTTCATCCATGGACAGGTCTC 59.231 50.000 18.99 0.00 0.00 3.36
1335 1339 1.672030 CTGCCATGTCAAGCGGTCA 60.672 57.895 0.00 0.00 0.00 4.02
1348 1352 1.016627 GCGGTCATTGAATGCTGCTA 58.983 50.000 19.19 0.00 36.45 3.49
1422 1426 7.807198 ACTATTCTACTCCAGAGTGTATCAGA 58.193 38.462 10.59 2.17 42.52 3.27
1499 1503 1.484038 AAAAAGAGCCACCTGCAACA 58.516 45.000 0.00 0.00 44.83 3.33
1500 1504 1.035139 AAAAGAGCCACCTGCAACAG 58.965 50.000 0.00 0.00 44.83 3.16
1510 1514 2.938354 CTGCAACAGGAAGGTCTGG 58.062 57.895 0.00 0.00 38.98 3.86
1511 1515 0.607489 CTGCAACAGGAAGGTCTGGG 60.607 60.000 0.00 0.00 38.98 4.45
1512 1516 1.352622 TGCAACAGGAAGGTCTGGGT 61.353 55.000 0.00 0.00 38.98 4.51
1513 1517 0.690762 GCAACAGGAAGGTCTGGGTA 59.309 55.000 0.00 0.00 38.98 3.69
1514 1518 1.610886 GCAACAGGAAGGTCTGGGTAC 60.611 57.143 0.00 0.00 38.98 3.34
1515 1519 1.697432 CAACAGGAAGGTCTGGGTACA 59.303 52.381 0.00 0.00 38.98 2.90
1516 1520 2.105821 CAACAGGAAGGTCTGGGTACAA 59.894 50.000 0.00 0.00 38.98 2.41
1517 1521 1.697982 ACAGGAAGGTCTGGGTACAAC 59.302 52.381 0.00 0.00 38.98 3.32
1518 1522 0.974383 AGGAAGGTCTGGGTACAACG 59.026 55.000 0.00 0.00 0.00 4.10
1519 1523 0.971386 GGAAGGTCTGGGTACAACGA 59.029 55.000 0.00 0.00 0.00 3.85
1520 1524 1.337541 GGAAGGTCTGGGTACAACGAC 60.338 57.143 0.00 0.00 0.00 4.34
1521 1525 0.683412 AAGGTCTGGGTACAACGACC 59.317 55.000 15.10 15.10 44.84 4.79
1522 1526 1.080298 GGTCTGGGTACAACGACCG 60.080 63.158 9.88 0.00 40.76 4.79
1523 1527 1.735559 GTCTGGGTACAACGACCGC 60.736 63.158 0.00 0.00 40.76 5.68
1524 1528 2.201708 TCTGGGTACAACGACCGCA 61.202 57.895 0.00 0.00 40.76 5.69
1525 1529 1.736645 CTGGGTACAACGACCGCAG 60.737 63.158 0.00 0.00 40.76 5.18
1526 1530 3.116531 GGGTACAACGACCGCAGC 61.117 66.667 0.00 0.00 40.76 5.25
1527 1531 2.048503 GGTACAACGACCGCAGCT 60.049 61.111 0.00 0.00 0.00 4.24
1528 1532 1.666872 GGTACAACGACCGCAGCTT 60.667 57.895 0.00 0.00 0.00 3.74
1529 1533 1.623973 GGTACAACGACCGCAGCTTC 61.624 60.000 0.00 0.00 0.00 3.86
1530 1534 0.666577 GTACAACGACCGCAGCTTCT 60.667 55.000 0.00 0.00 0.00 2.85
1531 1535 0.388134 TACAACGACCGCAGCTTCTC 60.388 55.000 0.00 0.00 0.00 2.87
1532 1536 2.048127 AACGACCGCAGCTTCTCC 60.048 61.111 0.00 0.00 0.00 3.71
1533 1537 2.574955 AACGACCGCAGCTTCTCCT 61.575 57.895 0.00 0.00 0.00 3.69
1534 1538 2.202676 CGACCGCAGCTTCTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
1535 1539 2.705821 CGACCGCAGCTTCTCCTCT 61.706 63.158 0.00 0.00 0.00 3.69
1536 1540 1.377366 CGACCGCAGCTTCTCCTCTA 61.377 60.000 0.00 0.00 0.00 2.43
1537 1541 0.101579 GACCGCAGCTTCTCCTCTAC 59.898 60.000 0.00 0.00 0.00 2.59
1538 1542 0.612174 ACCGCAGCTTCTCCTCTACA 60.612 55.000 0.00 0.00 0.00 2.74
1539 1543 0.179124 CCGCAGCTTCTCCTCTACAC 60.179 60.000 0.00 0.00 0.00 2.90
1540 1544 0.814457 CGCAGCTTCTCCTCTACACT 59.186 55.000 0.00 0.00 0.00 3.55
1541 1545 1.468908 CGCAGCTTCTCCTCTACACTG 60.469 57.143 0.00 0.00 0.00 3.66
1542 1546 1.821753 GCAGCTTCTCCTCTACACTGA 59.178 52.381 0.00 0.00 0.00 3.41
1543 1547 2.430332 GCAGCTTCTCCTCTACACTGAT 59.570 50.000 0.00 0.00 0.00 2.90
1544 1548 3.490761 GCAGCTTCTCCTCTACACTGATC 60.491 52.174 0.00 0.00 0.00 2.92
1545 1549 3.698539 CAGCTTCTCCTCTACACTGATCA 59.301 47.826 0.00 0.00 0.00 2.92
1546 1550 3.699038 AGCTTCTCCTCTACACTGATCAC 59.301 47.826 0.00 0.00 0.00 3.06
1547 1551 3.445450 GCTTCTCCTCTACACTGATCACA 59.555 47.826 0.00 0.00 0.00 3.58
1548 1552 4.676723 GCTTCTCCTCTACACTGATCACAC 60.677 50.000 0.00 0.00 0.00 3.82
1549 1553 3.010420 TCTCCTCTACACTGATCACACG 58.990 50.000 0.00 0.00 0.00 4.49
1550 1554 2.750166 CTCCTCTACACTGATCACACGT 59.250 50.000 0.00 0.00 0.00 4.49
1551 1555 3.154710 TCCTCTACACTGATCACACGTT 58.845 45.455 0.00 0.00 0.00 3.99
1552 1556 3.190744 TCCTCTACACTGATCACACGTTC 59.809 47.826 0.00 0.00 0.00 3.95
1553 1557 3.502920 CTCTACACTGATCACACGTTCC 58.497 50.000 0.00 0.00 0.00 3.62
1554 1558 2.888414 TCTACACTGATCACACGTTCCA 59.112 45.455 0.00 0.00 0.00 3.53
1555 1559 2.154854 ACACTGATCACACGTTCCAG 57.845 50.000 0.00 0.00 0.00 3.86
1556 1560 0.792640 CACTGATCACACGTTCCAGC 59.207 55.000 0.00 0.00 0.00 4.85
1557 1561 0.392706 ACTGATCACACGTTCCAGCA 59.607 50.000 0.00 0.00 0.00 4.41
1558 1562 1.002430 ACTGATCACACGTTCCAGCAT 59.998 47.619 0.00 0.00 0.00 3.79
1559 1563 1.662629 CTGATCACACGTTCCAGCATC 59.337 52.381 0.00 0.00 0.00 3.91
1560 1564 1.009829 GATCACACGTTCCAGCATCC 58.990 55.000 0.00 0.00 0.00 3.51
1561 1565 0.324614 ATCACACGTTCCAGCATCCA 59.675 50.000 0.00 0.00 0.00 3.41
1562 1566 0.107643 TCACACGTTCCAGCATCCAA 59.892 50.000 0.00 0.00 0.00 3.53
1563 1567 0.238289 CACACGTTCCAGCATCCAAC 59.762 55.000 0.00 0.00 0.00 3.77
1564 1568 0.889186 ACACGTTCCAGCATCCAACC 60.889 55.000 0.00 0.00 0.00 3.77
1565 1569 0.888736 CACGTTCCAGCATCCAACCA 60.889 55.000 0.00 0.00 0.00 3.67
1566 1570 0.889186 ACGTTCCAGCATCCAACCAC 60.889 55.000 0.00 0.00 0.00 4.16
1567 1571 0.606401 CGTTCCAGCATCCAACCACT 60.606 55.000 0.00 0.00 0.00 4.00
1568 1572 1.338674 CGTTCCAGCATCCAACCACTA 60.339 52.381 0.00 0.00 0.00 2.74
1569 1573 2.359900 GTTCCAGCATCCAACCACTAG 58.640 52.381 0.00 0.00 0.00 2.57
1570 1574 0.253044 TCCAGCATCCAACCACTAGC 59.747 55.000 0.00 0.00 0.00 3.42
1571 1575 0.035152 CCAGCATCCAACCACTAGCA 60.035 55.000 0.00 0.00 0.00 3.49
1572 1576 1.089920 CAGCATCCAACCACTAGCAC 58.910 55.000 0.00 0.00 0.00 4.40
1573 1577 0.035056 AGCATCCAACCACTAGCACC 60.035 55.000 0.00 0.00 0.00 5.01
1574 1578 0.322456 GCATCCAACCACTAGCACCA 60.322 55.000 0.00 0.00 0.00 4.17
1575 1579 1.453155 CATCCAACCACTAGCACCAC 58.547 55.000 0.00 0.00 0.00 4.16
1576 1580 0.328258 ATCCAACCACTAGCACCACC 59.672 55.000 0.00 0.00 0.00 4.61
1577 1581 1.057275 TCCAACCACTAGCACCACCA 61.057 55.000 0.00 0.00 0.00 4.17
1578 1582 0.889186 CCAACCACTAGCACCACCAC 60.889 60.000 0.00 0.00 0.00 4.16
1579 1583 0.889186 CAACCACTAGCACCACCACC 60.889 60.000 0.00 0.00 0.00 4.61
1580 1584 1.349542 AACCACTAGCACCACCACCA 61.350 55.000 0.00 0.00 0.00 4.17
1581 1585 1.302511 CCACTAGCACCACCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
1582 1586 1.754745 CACTAGCACCACCACCACT 59.245 57.895 0.00 0.00 0.00 4.00
1583 1587 0.108585 CACTAGCACCACCACCACTT 59.891 55.000 0.00 0.00 0.00 3.16
1584 1588 0.108585 ACTAGCACCACCACCACTTG 59.891 55.000 0.00 0.00 0.00 3.16
1585 1589 1.228124 TAGCACCACCACCACTTGC 60.228 57.895 0.00 0.00 0.00 4.01
1586 1590 1.705002 TAGCACCACCACCACTTGCT 61.705 55.000 0.00 0.00 45.37 3.91
1587 1591 1.228124 GCACCACCACCACTTGCTA 60.228 57.895 0.00 0.00 0.00 3.49
1588 1592 1.237285 GCACCACCACCACTTGCTAG 61.237 60.000 0.00 0.00 0.00 3.42
1589 1593 0.108585 CACCACCACCACTTGCTAGT 59.891 55.000 0.00 0.00 34.00 2.57
1590 1594 1.346395 CACCACCACCACTTGCTAGTA 59.654 52.381 0.00 0.00 31.96 1.82
1591 1595 1.346722 ACCACCACCACTTGCTAGTAC 59.653 52.381 0.00 0.00 31.96 2.73
1592 1596 1.623811 CCACCACCACTTGCTAGTACT 59.376 52.381 0.00 0.00 31.96 2.73
1593 1597 2.612972 CCACCACCACTTGCTAGTACTG 60.613 54.545 5.39 0.00 31.96 2.74
1594 1598 2.037251 CACCACCACTTGCTAGTACTGT 59.963 50.000 5.39 0.00 31.96 3.55
1595 1599 2.037251 ACCACCACTTGCTAGTACTGTG 59.963 50.000 5.39 8.76 31.96 3.66
1597 1601 2.386661 CCACTTGCTAGTACTGTGGG 57.613 55.000 17.59 3.88 43.01 4.61
1598 1602 1.066143 CCACTTGCTAGTACTGTGGGG 60.066 57.143 17.59 5.64 43.01 4.96
1599 1603 1.899814 CACTTGCTAGTACTGTGGGGA 59.100 52.381 5.39 0.00 31.96 4.81
1600 1604 2.093973 CACTTGCTAGTACTGTGGGGAG 60.094 54.545 5.39 0.00 31.96 4.30
1601 1605 1.482593 CTTGCTAGTACTGTGGGGAGG 59.517 57.143 5.39 0.00 0.00 4.30
1602 1606 0.412244 TGCTAGTACTGTGGGGAGGT 59.588 55.000 5.39 0.00 0.00 3.85
1603 1607 0.824759 GCTAGTACTGTGGGGAGGTG 59.175 60.000 5.39 0.00 0.00 4.00
1604 1608 1.895866 GCTAGTACTGTGGGGAGGTGT 60.896 57.143 5.39 0.00 0.00 4.16
1605 1609 2.622452 GCTAGTACTGTGGGGAGGTGTA 60.622 54.545 5.39 0.00 0.00 2.90
1606 1610 2.233305 AGTACTGTGGGGAGGTGTAG 57.767 55.000 0.00 0.00 0.00 2.74
1607 1611 0.535797 GTACTGTGGGGAGGTGTAGC 59.464 60.000 0.00 0.00 0.00 3.58
1608 1612 0.616679 TACTGTGGGGAGGTGTAGCC 60.617 60.000 0.00 0.00 37.58 3.93
1609 1613 1.918293 CTGTGGGGAGGTGTAGCCA 60.918 63.158 0.00 0.00 40.61 4.75
1610 1614 2.185310 CTGTGGGGAGGTGTAGCCAC 62.185 65.000 0.00 0.00 40.61 5.01
1611 1615 2.205749 TGGGGAGGTGTAGCCACA 59.794 61.111 0.00 0.00 43.71 4.17
1612 1616 1.229820 TGGGGAGGTGTAGCCACAT 60.230 57.895 0.00 0.00 43.71 3.21
1613 1617 1.224592 GGGGAGGTGTAGCCACATG 59.775 63.158 0.00 0.00 43.71 3.21
1614 1618 1.224592 GGGAGGTGTAGCCACATGG 59.775 63.158 0.00 0.00 43.71 3.66
1615 1619 1.271840 GGGAGGTGTAGCCACATGGA 61.272 60.000 0.87 0.00 43.71 3.41
1616 1620 0.839946 GGAGGTGTAGCCACATGGAT 59.160 55.000 0.87 0.00 43.71 3.41
1617 1621 2.047061 GGAGGTGTAGCCACATGGATA 58.953 52.381 0.87 0.00 43.71 2.59
1618 1622 2.639839 GGAGGTGTAGCCACATGGATAT 59.360 50.000 0.87 0.00 43.71 1.63
1619 1623 3.307059 GGAGGTGTAGCCACATGGATATC 60.307 52.174 0.87 0.00 43.71 1.63
1620 1624 3.317406 AGGTGTAGCCACATGGATATCA 58.683 45.455 4.83 0.00 43.71 2.15
1621 1625 3.912528 AGGTGTAGCCACATGGATATCAT 59.087 43.478 4.83 0.00 43.71 2.45
1622 1626 4.263199 AGGTGTAGCCACATGGATATCATG 60.263 45.833 4.83 8.92 45.68 3.07
1623 1627 6.462770 AGGTGTAGCCACATGGATATCATGA 61.463 44.000 16.94 0.00 46.78 3.07
1624 1628 7.886648 AGGTGTAGCCACATGGATATCATGAA 61.887 42.308 16.94 0.00 46.78 2.57
1625 1629 9.794828 AGGTGTAGCCACATGGATATCATGAAC 62.795 44.444 16.94 0.00 46.78 3.18
1637 1641 9.690913 ATGGATATCATGAACCCATTTATAGTG 57.309 33.333 16.53 0.00 34.19 2.74
1638 1642 8.889445 TGGATATCATGAACCCATTTATAGTGA 58.111 33.333 0.00 0.00 0.00 3.41
1639 1643 9.911788 GGATATCATGAACCCATTTATAGTGAT 57.088 33.333 0.00 0.00 0.00 3.06
1643 1647 9.818270 ATCATGAACCCATTTATAGTGATCAAT 57.182 29.630 0.00 0.00 0.00 2.57
1644 1648 9.288576 TCATGAACCCATTTATAGTGATCAATC 57.711 33.333 0.00 0.00 0.00 2.67
1645 1649 9.293404 CATGAACCCATTTATAGTGATCAATCT 57.707 33.333 0.00 0.00 0.00 2.40
1646 1650 8.908786 TGAACCCATTTATAGTGATCAATCTC 57.091 34.615 0.00 0.00 0.00 2.75
1647 1651 8.493607 TGAACCCATTTATAGTGATCAATCTCA 58.506 33.333 0.00 0.00 0.00 3.27
1648 1652 9.342308 GAACCCATTTATAGTGATCAATCTCAA 57.658 33.333 0.00 0.00 0.00 3.02
1649 1653 9.872684 AACCCATTTATAGTGATCAATCTCAAT 57.127 29.630 0.00 0.00 0.00 2.57
1656 1660 9.692749 TTATAGTGATCAATCTCAATACGTTCC 57.307 33.333 0.00 0.00 29.47 3.62
1657 1661 5.360591 AGTGATCAATCTCAATACGTTCCC 58.639 41.667 0.00 0.00 0.00 3.97
1658 1662 4.209288 GTGATCAATCTCAATACGTTCCCG 59.791 45.833 0.00 0.00 40.83 5.14
1660 1664 3.777478 TCAATCTCAATACGTTCCCGTC 58.223 45.455 0.00 0.00 46.28 4.79
1661 1665 3.446161 TCAATCTCAATACGTTCCCGTCT 59.554 43.478 0.00 0.00 46.28 4.18
1662 1666 2.933495 TCTCAATACGTTCCCGTCTG 57.067 50.000 0.00 0.00 46.28 3.51
1663 1667 2.439409 TCTCAATACGTTCCCGTCTGA 58.561 47.619 0.00 0.00 46.28 3.27
1664 1668 2.163010 TCTCAATACGTTCCCGTCTGAC 59.837 50.000 0.00 0.00 46.28 3.51
1665 1669 1.135603 TCAATACGTTCCCGTCTGACG 60.136 52.381 22.49 22.49 46.28 4.35
1666 1670 1.135603 CAATACGTTCCCGTCTGACGA 60.136 52.381 29.93 9.65 46.28 4.20
1667 1671 0.449388 ATACGTTCCCGTCTGACGAC 59.551 55.000 29.93 18.97 46.28 4.34
1675 1679 4.021650 GTCTGACGACGTTGCCAA 57.978 55.556 0.13 0.00 0.00 4.52
1676 1680 1.853319 GTCTGACGACGTTGCCAAG 59.147 57.895 0.13 0.00 0.00 3.61
1677 1681 0.874607 GTCTGACGACGTTGCCAAGT 60.875 55.000 0.13 0.00 0.00 3.16
1678 1682 0.874175 TCTGACGACGTTGCCAAGTG 60.874 55.000 0.13 0.00 0.00 3.16
1679 1683 1.831389 CTGACGACGTTGCCAAGTGG 61.831 60.000 0.13 0.00 38.53 4.00
1680 1684 1.593209 GACGACGTTGCCAAGTGGA 60.593 57.895 0.13 0.00 37.39 4.02
1681 1685 1.557443 GACGACGTTGCCAAGTGGAG 61.557 60.000 0.13 0.00 37.39 3.86
1682 1686 2.946762 GACGTTGCCAAGTGGAGC 59.053 61.111 0.18 0.00 37.39 4.70
1683 1687 1.598130 GACGTTGCCAAGTGGAGCT 60.598 57.895 0.18 0.00 37.39 4.09
1684 1688 0.320421 GACGTTGCCAAGTGGAGCTA 60.320 55.000 0.18 0.00 37.39 3.32
1685 1689 0.602905 ACGTTGCCAAGTGGAGCTAC 60.603 55.000 0.18 0.00 37.39 3.58
1686 1690 0.320771 CGTTGCCAAGTGGAGCTACT 60.321 55.000 0.18 0.00 37.39 2.57
1687 1691 1.878102 CGTTGCCAAGTGGAGCTACTT 60.878 52.381 0.18 0.00 41.37 2.24
1688 1692 2.230660 GTTGCCAAGTGGAGCTACTTT 58.769 47.619 0.18 0.00 38.78 2.66
1689 1693 2.623416 GTTGCCAAGTGGAGCTACTTTT 59.377 45.455 0.18 0.00 38.78 2.27
1690 1694 2.504367 TGCCAAGTGGAGCTACTTTTC 58.496 47.619 0.18 0.00 38.78 2.29
1691 1695 2.158682 TGCCAAGTGGAGCTACTTTTCA 60.159 45.455 0.18 0.00 38.78 2.69
1692 1696 3.084786 GCCAAGTGGAGCTACTTTTCAT 58.915 45.455 0.18 0.00 38.78 2.57
1693 1697 3.507622 GCCAAGTGGAGCTACTTTTCATT 59.492 43.478 0.18 0.00 38.78 2.57
1694 1698 4.616835 GCCAAGTGGAGCTACTTTTCATTG 60.617 45.833 0.18 0.00 38.78 2.82
1695 1699 4.479619 CAAGTGGAGCTACTTTTCATTGC 58.520 43.478 0.00 0.00 38.78 3.56
1696 1700 3.754965 AGTGGAGCTACTTTTCATTGCA 58.245 40.909 0.00 0.00 0.00 4.08
1697 1701 3.755378 AGTGGAGCTACTTTTCATTGCAG 59.245 43.478 0.00 0.00 0.00 4.41
1698 1702 3.503748 GTGGAGCTACTTTTCATTGCAGT 59.496 43.478 0.00 0.00 0.00 4.40
1699 1703 4.022849 GTGGAGCTACTTTTCATTGCAGTT 60.023 41.667 0.00 0.00 0.00 3.16
1700 1704 4.022935 TGGAGCTACTTTTCATTGCAGTTG 60.023 41.667 0.00 0.00 0.00 3.16
1701 1705 4.479619 GAGCTACTTTTCATTGCAGTTGG 58.520 43.478 0.00 0.00 0.00 3.77
1702 1706 3.891366 AGCTACTTTTCATTGCAGTTGGT 59.109 39.130 0.00 0.00 0.00 3.67
1703 1707 5.070001 AGCTACTTTTCATTGCAGTTGGTA 58.930 37.500 0.00 0.00 0.00 3.25
1704 1708 5.182001 AGCTACTTTTCATTGCAGTTGGTAG 59.818 40.000 0.00 0.00 0.00 3.18
1705 1709 4.853924 ACTTTTCATTGCAGTTGGTAGG 57.146 40.909 0.00 0.00 0.00 3.18
1706 1710 4.215109 ACTTTTCATTGCAGTTGGTAGGT 58.785 39.130 0.00 0.00 0.00 3.08
1707 1711 4.037923 ACTTTTCATTGCAGTTGGTAGGTG 59.962 41.667 0.00 0.00 0.00 4.00
1708 1712 2.198827 TCATTGCAGTTGGTAGGTGG 57.801 50.000 0.00 0.00 0.00 4.61
1709 1713 1.176527 CATTGCAGTTGGTAGGTGGG 58.823 55.000 0.00 0.00 0.00 4.61
1710 1714 1.072266 ATTGCAGTTGGTAGGTGGGA 58.928 50.000 0.00 0.00 0.00 4.37
1711 1715 0.400213 TTGCAGTTGGTAGGTGGGAG 59.600 55.000 0.00 0.00 0.00 4.30
1712 1716 1.377333 GCAGTTGGTAGGTGGGAGC 60.377 63.158 0.00 0.00 0.00 4.70
1713 1717 1.842381 GCAGTTGGTAGGTGGGAGCT 61.842 60.000 0.00 0.00 0.00 4.09
1714 1718 0.693049 CAGTTGGTAGGTGGGAGCTT 59.307 55.000 0.00 0.00 0.00 3.74
1715 1719 0.984995 AGTTGGTAGGTGGGAGCTTC 59.015 55.000 0.00 0.00 0.00 3.86
1716 1720 0.690762 GTTGGTAGGTGGGAGCTTCA 59.309 55.000 0.00 0.00 0.00 3.02
1717 1721 0.690762 TTGGTAGGTGGGAGCTTCAC 59.309 55.000 11.32 11.32 34.61 3.18
1725 1729 2.266055 GGAGCTTCACCACTCCCG 59.734 66.667 0.00 0.00 45.71 5.14
1726 1730 2.283529 GGAGCTTCACCACTCCCGA 61.284 63.158 0.00 0.00 45.71 5.14
1727 1731 1.079750 GAGCTTCACCACTCCCGAC 60.080 63.158 0.00 0.00 0.00 4.79
1728 1732 1.816863 GAGCTTCACCACTCCCGACA 61.817 60.000 0.00 0.00 0.00 4.35
1729 1733 1.194781 AGCTTCACCACTCCCGACAT 61.195 55.000 0.00 0.00 0.00 3.06
1730 1734 0.321653 GCTTCACCACTCCCGACATT 60.322 55.000 0.00 0.00 0.00 2.71
1731 1735 1.726853 CTTCACCACTCCCGACATTC 58.273 55.000 0.00 0.00 0.00 2.67
1732 1736 1.276421 CTTCACCACTCCCGACATTCT 59.724 52.381 0.00 0.00 0.00 2.40
1733 1737 0.608130 TCACCACTCCCGACATTCTG 59.392 55.000 0.00 0.00 0.00 3.02
1734 1738 0.391661 CACCACTCCCGACATTCTGG 60.392 60.000 0.00 0.00 0.00 3.86
1735 1739 0.836400 ACCACTCCCGACATTCTGGT 60.836 55.000 0.00 0.00 0.00 4.00
1736 1740 0.108138 CCACTCCCGACATTCTGGTC 60.108 60.000 0.00 0.00 34.42 4.02
1745 1749 2.959516 GACATTCTGGTCGTCACATCA 58.040 47.619 0.00 0.00 0.00 3.07
1746 1750 2.668457 GACATTCTGGTCGTCACATCAC 59.332 50.000 0.00 0.00 0.00 3.06
1747 1751 2.037121 ACATTCTGGTCGTCACATCACA 59.963 45.455 0.00 0.00 0.00 3.58
1748 1752 2.438868 TTCTGGTCGTCACATCACAG 57.561 50.000 0.00 0.00 0.00 3.66
1749 1753 0.603065 TCTGGTCGTCACATCACAGG 59.397 55.000 0.00 0.00 0.00 4.00
1750 1754 0.318441 CTGGTCGTCACATCACAGGT 59.682 55.000 0.00 0.00 0.00 4.00
1751 1755 1.544246 CTGGTCGTCACATCACAGGTA 59.456 52.381 0.00 0.00 0.00 3.08
1752 1756 1.964933 TGGTCGTCACATCACAGGTAA 59.035 47.619 0.00 0.00 0.00 2.85
1753 1757 2.029380 TGGTCGTCACATCACAGGTAAG 60.029 50.000 0.00 0.00 0.00 2.34
1754 1758 2.607187 GTCGTCACATCACAGGTAAGG 58.393 52.381 0.00 0.00 0.00 2.69
1755 1759 2.230508 GTCGTCACATCACAGGTAAGGA 59.769 50.000 0.00 0.00 0.00 3.36
1756 1760 3.096852 TCGTCACATCACAGGTAAGGAT 58.903 45.455 0.00 0.00 0.00 3.24
1757 1761 3.513912 TCGTCACATCACAGGTAAGGATT 59.486 43.478 0.00 0.00 0.00 3.01
1758 1762 4.020573 TCGTCACATCACAGGTAAGGATTT 60.021 41.667 0.00 0.00 0.00 2.17
1759 1763 4.093408 CGTCACATCACAGGTAAGGATTTG 59.907 45.833 0.00 0.00 0.00 2.32
1760 1764 5.003804 GTCACATCACAGGTAAGGATTTGT 58.996 41.667 0.00 0.00 0.00 2.83
1761 1765 5.473504 GTCACATCACAGGTAAGGATTTGTT 59.526 40.000 0.00 0.00 0.00 2.83
1762 1766 6.016276 GTCACATCACAGGTAAGGATTTGTTT 60.016 38.462 0.00 0.00 0.00 2.83
1763 1767 6.016360 TCACATCACAGGTAAGGATTTGTTTG 60.016 38.462 0.00 0.00 0.00 2.93
1764 1768 4.846779 TCACAGGTAAGGATTTGTTTGC 57.153 40.909 0.00 0.00 0.00 3.68
1765 1769 3.572255 TCACAGGTAAGGATTTGTTTGCC 59.428 43.478 0.00 0.00 0.00 4.52
1766 1770 2.556622 ACAGGTAAGGATTTGTTTGCCG 59.443 45.455 0.00 0.00 0.00 5.69
1767 1771 2.556622 CAGGTAAGGATTTGTTTGCCGT 59.443 45.455 0.00 0.00 0.00 5.68
1768 1772 2.556622 AGGTAAGGATTTGTTTGCCGTG 59.443 45.455 0.00 0.00 0.00 4.94
1769 1773 2.352323 GGTAAGGATTTGTTTGCCGTGG 60.352 50.000 0.00 0.00 0.00 4.94
1770 1774 1.408969 AAGGATTTGTTTGCCGTGGT 58.591 45.000 0.00 0.00 0.00 4.16
1771 1775 0.958822 AGGATTTGTTTGCCGTGGTC 59.041 50.000 0.00 0.00 0.00 4.02
1772 1776 0.038618 GGATTTGTTTGCCGTGGTCC 60.039 55.000 0.00 0.00 0.00 4.46
1773 1777 0.671251 GATTTGTTTGCCGTGGTCCA 59.329 50.000 0.00 0.00 0.00 4.02
1774 1778 0.387565 ATTTGTTTGCCGTGGTCCAC 59.612 50.000 12.40 12.40 0.00 4.02
1775 1779 0.681564 TTTGTTTGCCGTGGTCCACT 60.682 50.000 19.82 0.00 31.34 4.00
1776 1780 0.180642 TTGTTTGCCGTGGTCCACTA 59.819 50.000 19.82 3.58 31.34 2.74
1777 1781 0.250124 TGTTTGCCGTGGTCCACTAG 60.250 55.000 19.82 11.90 31.34 2.57
1778 1782 1.302192 TTTGCCGTGGTCCACTAGC 60.302 57.895 19.82 20.63 33.79 3.42
1779 1783 2.741486 TTTGCCGTGGTCCACTAGCC 62.741 60.000 23.70 10.05 32.75 3.93
1780 1784 3.702048 GCCGTGGTCCACTAGCCA 61.702 66.667 19.82 0.00 31.34 4.75
1781 1785 2.579201 CCGTGGTCCACTAGCCAG 59.421 66.667 19.82 3.03 35.14 4.85
1782 1786 2.283529 CCGTGGTCCACTAGCCAGT 61.284 63.158 19.82 0.00 35.14 4.00
1799 1803 2.110213 TGGAGAACACCACCGTGC 59.890 61.111 0.00 0.00 44.40 5.34
1800 1804 2.110213 GGAGAACACCACCGTGCA 59.890 61.111 0.00 0.00 44.40 4.57
1801 1805 1.961277 GGAGAACACCACCGTGCAG 60.961 63.158 0.00 0.00 44.40 4.41
1802 1806 1.961277 GAGAACACCACCGTGCAGG 60.961 63.158 0.00 0.00 44.40 4.85
1803 1807 2.110213 GAACACCACCGTGCAGGA 59.890 61.111 8.24 0.00 44.40 3.86
1804 1808 1.302511 GAACACCACCGTGCAGGAT 60.303 57.895 8.24 0.00 44.40 3.24
1805 1809 0.889186 GAACACCACCGTGCAGGATT 60.889 55.000 8.24 0.00 44.40 3.01
1806 1810 1.172180 AACACCACCGTGCAGGATTG 61.172 55.000 8.24 4.56 44.40 2.67
1815 1819 3.924507 GCAGGATTGCGGATTGGT 58.075 55.556 0.00 0.00 41.13 3.67
1816 1820 1.729881 GCAGGATTGCGGATTGGTC 59.270 57.895 0.00 0.00 41.13 4.02
1817 1821 1.728490 GCAGGATTGCGGATTGGTCC 61.728 60.000 0.00 0.00 41.13 4.46
1818 1822 0.107017 CAGGATTGCGGATTGGTCCT 60.107 55.000 0.00 0.00 42.73 3.85
1819 1823 0.181350 AGGATTGCGGATTGGTCCTC 59.819 55.000 0.00 0.00 42.73 3.71
1820 1824 0.107214 GGATTGCGGATTGGTCCTCA 60.107 55.000 0.00 0.00 42.73 3.86
1821 1825 1.017387 GATTGCGGATTGGTCCTCAC 58.983 55.000 0.00 0.00 38.89 3.51
1822 1826 0.327924 ATTGCGGATTGGTCCTCACA 59.672 50.000 0.00 0.00 38.89 3.58
1823 1827 0.327924 TTGCGGATTGGTCCTCACAT 59.672 50.000 0.00 0.00 38.89 3.21
1824 1828 0.107703 TGCGGATTGGTCCTCACATC 60.108 55.000 0.00 0.00 42.73 3.06
1843 1847 2.836262 TCATTTTGTTTTGCTGCCTGG 58.164 42.857 0.00 0.00 0.00 4.45
1854 1858 4.680237 TGCCTGGTTCTGCCGTCG 62.680 66.667 0.00 0.00 41.21 5.12
1863 1867 1.740332 TTCTGCCGTCGTGGACAAGA 61.740 55.000 0.51 0.00 42.00 3.02
1867 1871 2.654912 CCGTCGTGGACAAGAACGC 61.655 63.158 0.00 0.00 42.00 4.84
1888 1893 1.867919 CGAGACTGTTGGAGCGTCCT 61.868 60.000 5.77 0.00 37.46 3.85
1905 1910 3.081804 GTCCTCATTTGGGATTTGACGT 58.918 45.455 0.00 0.00 35.15 4.34
2036 2041 0.885196 GCGGGCATGGTTTTCACTTA 59.115 50.000 0.00 0.00 0.00 2.24
2083 2088 0.819582 ATGCATGTAGTTGCTTGGGC 59.180 50.000 0.00 0.00 43.18 5.36
2125 2140 4.898607 AACTGATGGTTGGTGCGT 57.101 50.000 0.00 0.00 36.70 5.24
2231 2248 5.388225 GTCATGTTTGACGTTGCAATTTT 57.612 34.783 0.59 0.00 42.66 1.82
2294 2319 1.181741 CCTAGCTATGCAGAGGCCGA 61.182 60.000 10.92 0.00 40.13 5.54
2367 2392 9.567776 AATAAAATCCACCCTTTTTCGAAAAAT 57.432 25.926 30.37 17.04 37.27 1.82
2368 2393 6.859420 AAATCCACCCTTTTTCGAAAAATG 57.141 33.333 30.37 26.77 37.27 2.32
2370 2395 4.939271 TCCACCCTTTTTCGAAAAATGTC 58.061 39.130 30.37 0.00 37.27 3.06
2372 2397 5.128008 TCCACCCTTTTTCGAAAAATGTCTT 59.872 36.000 30.37 14.62 37.27 3.01
2373 2398 5.815222 CCACCCTTTTTCGAAAAATGTCTTT 59.185 36.000 30.37 13.11 37.27 2.52
2374 2399 6.981559 CCACCCTTTTTCGAAAAATGTCTTTA 59.018 34.615 30.37 11.03 37.27 1.85
2375 2400 7.492994 CCACCCTTTTTCGAAAAATGTCTTTAA 59.507 33.333 30.37 10.38 37.27 1.52
2376 2401 8.325282 CACCCTTTTTCGAAAAATGTCTTTAAC 58.675 33.333 30.37 0.00 37.27 2.01
2377 2402 7.493320 ACCCTTTTTCGAAAAATGTCTTTAACC 59.507 33.333 30.37 0.00 37.27 2.85
2378 2403 7.709182 CCCTTTTTCGAAAAATGTCTTTAACCT 59.291 33.333 30.37 0.00 37.27 3.50
2379 2404 8.752254 CCTTTTTCGAAAAATGTCTTTAACCTC 58.248 33.333 30.37 0.00 37.27 3.85
2380 2405 9.516314 CTTTTTCGAAAAATGTCTTTAACCTCT 57.484 29.630 30.37 0.00 37.27 3.69
2381 2406 9.863845 TTTTTCGAAAAATGTCTTTAACCTCTT 57.136 25.926 27.64 0.00 33.29 2.85
2382 2407 8.850454 TTTCGAAAAATGTCTTTAACCTCTTG 57.150 30.769 8.44 0.00 0.00 3.02
2383 2408 7.562454 TCGAAAAATGTCTTTAACCTCTTGT 57.438 32.000 0.00 0.00 0.00 3.16
2384 2409 8.665643 TCGAAAAATGTCTTTAACCTCTTGTA 57.334 30.769 0.00 0.00 0.00 2.41
2385 2410 9.280174 TCGAAAAATGTCTTTAACCTCTTGTAT 57.720 29.630 0.00 0.00 0.00 2.29
2386 2411 9.329913 CGAAAAATGTCTTTAACCTCTTGTATG 57.670 33.333 0.00 0.00 0.00 2.39
2388 2413 9.965824 AAAAATGTCTTTAACCTCTTGTATGTG 57.034 29.630 0.00 0.00 0.00 3.21
2389 2414 8.691661 AAATGTCTTTAACCTCTTGTATGTGT 57.308 30.769 0.00 0.00 0.00 3.72
2390 2415 8.691661 AATGTCTTTAACCTCTTGTATGTGTT 57.308 30.769 0.00 0.00 0.00 3.32
2391 2416 9.787435 AATGTCTTTAACCTCTTGTATGTGTTA 57.213 29.630 0.00 0.00 0.00 2.41
2392 2417 9.787435 ATGTCTTTAACCTCTTGTATGTGTTAA 57.213 29.630 0.00 0.00 31.56 2.01
2393 2418 9.787435 TGTCTTTAACCTCTTGTATGTGTTAAT 57.213 29.630 0.00 0.00 33.05 1.40
2400 2425 9.959721 AACCTCTTGTATGTGTTAATTCTACAT 57.040 29.630 0.00 0.00 38.48 2.29
2401 2426 9.601217 ACCTCTTGTATGTGTTAATTCTACATC 57.399 33.333 5.67 1.38 36.52 3.06
2402 2427 9.823647 CCTCTTGTATGTGTTAATTCTACATCT 57.176 33.333 5.67 0.00 36.52 2.90
2411 2436 9.225436 TGTGTTAATTCTACATCTGTTAATGCA 57.775 29.630 0.00 0.00 0.00 3.96
2412 2437 9.708222 GTGTTAATTCTACATCTGTTAATGCAG 57.292 33.333 0.00 0.00 37.81 4.41
2413 2438 9.448438 TGTTAATTCTACATCTGTTAATGCAGT 57.552 29.630 0.00 0.00 37.70 4.40
2414 2439 9.708222 GTTAATTCTACATCTGTTAATGCAGTG 57.292 33.333 0.00 0.00 37.70 3.66
2415 2440 5.801350 TTCTACATCTGTTAATGCAGTGC 57.199 39.130 8.58 8.58 37.70 4.40
2416 2441 4.831107 TCTACATCTGTTAATGCAGTGCA 58.169 39.130 22.22 22.22 44.86 4.57
2449 2474 9.915629 TTTTAAGTCAAACTTTGTAAGCTTTCA 57.084 25.926 3.20 1.99 39.51 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.489810 CAAGTATAGGATGATGACCTCGC 58.510 47.826 0.00 0.00 38.76 5.03
93 94 2.158871 TCGAACACCAGCCTTAACAAGT 60.159 45.455 0.00 0.00 0.00 3.16
114 115 0.106015 GGCCATTAGCAGTTCCCCAT 60.106 55.000 0.00 0.00 46.50 4.00
122 123 4.799564 TTAACCTTTTGGCCATTAGCAG 57.200 40.909 6.09 0.00 46.50 4.24
175 176 0.863144 GTTCGCAACATGTACGGTGT 59.137 50.000 17.97 0.00 0.00 4.16
427 428 2.027625 GGCCAGTCGTACTGTGTGC 61.028 63.158 0.00 9.05 44.50 4.57
516 517 6.491403 ACCTTCAGAGCACTATGTTCATTTTT 59.509 34.615 0.00 0.00 29.40 1.94
537 538 1.623811 AGGCAGTCATGTACGAACCTT 59.376 47.619 0.00 0.00 0.00 3.50
563 564 0.889186 AAGGCGCAATTGAAGTCCGT 60.889 50.000 10.83 4.01 0.00 4.69
802 803 4.529377 CCTTGCTTCCCAAATATGCCATAT 59.471 41.667 0.00 0.00 31.94 1.78
888 892 7.815068 AGATGTAGCAGAACCAAATCGATATAC 59.185 37.037 0.00 0.00 0.00 1.47
909 913 4.023193 CCCGCAACAGTCTTAAAAAGATGT 60.023 41.667 0.00 0.00 40.18 3.06
948 952 5.450965 CCATCTAACCAATGAACTTGATGGC 60.451 44.000 0.00 0.00 41.76 4.40
1002 1006 0.248134 AGATAGCTGCGTCGACGTTC 60.248 55.000 35.48 24.29 42.22 3.95
1164 1168 1.675310 CAGCCTTTCATCACGGGCA 60.675 57.895 5.62 0.00 46.23 5.36
1185 1189 5.236047 GCAGTCTGAAGCGAAAATGATAGAT 59.764 40.000 3.32 0.00 0.00 1.98
1255 1259 1.140052 TGACACCACTACACCCACTTG 59.860 52.381 0.00 0.00 0.00 3.16
1348 1352 6.044520 TCACAGGACCTAGCTAGTATATGAGT 59.955 42.308 19.31 8.03 0.00 3.41
1492 1496 0.607489 CCCAGACCTTCCTGTTGCAG 60.607 60.000 0.00 0.00 32.43 4.41
1493 1497 1.352622 ACCCAGACCTTCCTGTTGCA 61.353 55.000 0.00 0.00 32.43 4.08
1494 1498 0.690762 TACCCAGACCTTCCTGTTGC 59.309 55.000 0.00 0.00 32.43 4.17
1495 1499 1.697432 TGTACCCAGACCTTCCTGTTG 59.303 52.381 0.00 0.00 32.43 3.33
1496 1500 2.105993 GTTGTACCCAGACCTTCCTGTT 59.894 50.000 0.00 0.00 32.43 3.16
1497 1501 1.697982 GTTGTACCCAGACCTTCCTGT 59.302 52.381 0.00 0.00 32.43 4.00
1498 1502 1.337823 CGTTGTACCCAGACCTTCCTG 60.338 57.143 0.00 0.00 0.00 3.86
1499 1503 0.974383 CGTTGTACCCAGACCTTCCT 59.026 55.000 0.00 0.00 0.00 3.36
1500 1504 0.971386 TCGTTGTACCCAGACCTTCC 59.029 55.000 0.00 0.00 0.00 3.46
1501 1505 1.337541 GGTCGTTGTACCCAGACCTTC 60.338 57.143 18.00 0.00 46.99 3.46
1502 1506 0.683412 GGTCGTTGTACCCAGACCTT 59.317 55.000 18.00 0.00 46.99 3.50
1503 1507 2.359088 GGTCGTTGTACCCAGACCT 58.641 57.895 18.00 0.00 46.99 3.85
1505 1509 1.735559 GCGGTCGTTGTACCCAGAC 60.736 63.158 0.00 0.00 36.03 3.51
1506 1510 2.149803 CTGCGGTCGTTGTACCCAGA 62.150 60.000 0.00 0.00 38.82 3.86
1507 1511 1.736645 CTGCGGTCGTTGTACCCAG 60.737 63.158 0.00 0.00 36.03 4.45
1508 1512 2.340809 CTGCGGTCGTTGTACCCA 59.659 61.111 0.00 0.00 36.03 4.51
1509 1513 3.116531 GCTGCGGTCGTTGTACCC 61.117 66.667 0.00 0.00 36.03 3.69
1510 1514 1.623973 GAAGCTGCGGTCGTTGTACC 61.624 60.000 0.00 0.00 36.08 3.34
1511 1515 0.666577 AGAAGCTGCGGTCGTTGTAC 60.667 55.000 0.00 0.00 0.00 2.90
1512 1516 0.388134 GAGAAGCTGCGGTCGTTGTA 60.388 55.000 0.00 0.00 0.00 2.41
1513 1517 1.664965 GAGAAGCTGCGGTCGTTGT 60.665 57.895 0.00 0.00 0.00 3.32
1514 1518 2.383527 GGAGAAGCTGCGGTCGTTG 61.384 63.158 0.00 0.00 0.00 4.10
1515 1519 2.048127 GGAGAAGCTGCGGTCGTT 60.048 61.111 0.00 0.00 0.00 3.85
1516 1520 2.992114 AGGAGAAGCTGCGGTCGT 60.992 61.111 0.00 0.00 0.00 4.34
1517 1521 1.377366 TAGAGGAGAAGCTGCGGTCG 61.377 60.000 0.00 0.00 0.00 4.79
1518 1522 0.101579 GTAGAGGAGAAGCTGCGGTC 59.898 60.000 0.00 0.00 0.00 4.79
1519 1523 0.612174 TGTAGAGGAGAAGCTGCGGT 60.612 55.000 0.00 0.00 0.00 5.68
1520 1524 0.179124 GTGTAGAGGAGAAGCTGCGG 60.179 60.000 0.00 0.00 0.00 5.69
1521 1525 0.814457 AGTGTAGAGGAGAAGCTGCG 59.186 55.000 0.00 0.00 0.00 5.18
1522 1526 1.821753 TCAGTGTAGAGGAGAAGCTGC 59.178 52.381 0.00 0.00 0.00 5.25
1523 1527 3.698539 TGATCAGTGTAGAGGAGAAGCTG 59.301 47.826 0.00 0.00 0.00 4.24
1524 1528 3.699038 GTGATCAGTGTAGAGGAGAAGCT 59.301 47.826 0.00 0.00 0.00 3.74
1525 1529 3.445450 TGTGATCAGTGTAGAGGAGAAGC 59.555 47.826 0.00 0.00 0.00 3.86
1526 1530 4.438065 CGTGTGATCAGTGTAGAGGAGAAG 60.438 50.000 0.00 0.00 0.00 2.85
1527 1531 3.440522 CGTGTGATCAGTGTAGAGGAGAA 59.559 47.826 0.00 0.00 0.00 2.87
1528 1532 3.010420 CGTGTGATCAGTGTAGAGGAGA 58.990 50.000 0.00 0.00 0.00 3.71
1529 1533 2.750166 ACGTGTGATCAGTGTAGAGGAG 59.250 50.000 0.00 0.00 0.00 3.69
1530 1534 2.791655 ACGTGTGATCAGTGTAGAGGA 58.208 47.619 0.00 0.00 0.00 3.71
1531 1535 3.502920 GAACGTGTGATCAGTGTAGAGG 58.497 50.000 0.00 0.00 0.00 3.69
1532 1536 3.057526 TGGAACGTGTGATCAGTGTAGAG 60.058 47.826 0.00 0.00 0.00 2.43
1533 1537 2.888414 TGGAACGTGTGATCAGTGTAGA 59.112 45.455 0.00 0.00 0.00 2.59
1534 1538 3.245797 CTGGAACGTGTGATCAGTGTAG 58.754 50.000 0.00 0.00 0.00 2.74
1535 1539 2.609491 GCTGGAACGTGTGATCAGTGTA 60.609 50.000 0.00 0.00 0.00 2.90
1536 1540 1.873903 GCTGGAACGTGTGATCAGTGT 60.874 52.381 0.00 0.00 0.00 3.55
1537 1541 0.792640 GCTGGAACGTGTGATCAGTG 59.207 55.000 0.00 0.00 0.00 3.66
1538 1542 0.392706 TGCTGGAACGTGTGATCAGT 59.607 50.000 0.00 0.00 0.00 3.41
1539 1543 1.662629 GATGCTGGAACGTGTGATCAG 59.337 52.381 0.00 0.00 0.00 2.90
1540 1544 1.675714 GGATGCTGGAACGTGTGATCA 60.676 52.381 0.00 0.00 0.00 2.92
1541 1545 1.009829 GGATGCTGGAACGTGTGATC 58.990 55.000 0.00 0.00 0.00 2.92
1542 1546 0.324614 TGGATGCTGGAACGTGTGAT 59.675 50.000 0.00 0.00 0.00 3.06
1543 1547 0.107643 TTGGATGCTGGAACGTGTGA 59.892 50.000 0.00 0.00 0.00 3.58
1544 1548 0.238289 GTTGGATGCTGGAACGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
1545 1549 0.889186 GGTTGGATGCTGGAACGTGT 60.889 55.000 0.00 0.00 0.00 4.49
1546 1550 0.888736 TGGTTGGATGCTGGAACGTG 60.889 55.000 0.00 0.00 0.00 4.49
1547 1551 0.889186 GTGGTTGGATGCTGGAACGT 60.889 55.000 0.00 0.00 0.00 3.99
1548 1552 0.606401 AGTGGTTGGATGCTGGAACG 60.606 55.000 0.00 0.00 0.00 3.95
1549 1553 2.359900 CTAGTGGTTGGATGCTGGAAC 58.640 52.381 0.00 0.00 0.00 3.62
1550 1554 1.340017 GCTAGTGGTTGGATGCTGGAA 60.340 52.381 0.00 0.00 0.00 3.53
1551 1555 0.253044 GCTAGTGGTTGGATGCTGGA 59.747 55.000 0.00 0.00 0.00 3.86
1552 1556 0.035152 TGCTAGTGGTTGGATGCTGG 60.035 55.000 0.00 0.00 0.00 4.85
1553 1557 1.089920 GTGCTAGTGGTTGGATGCTG 58.910 55.000 0.00 0.00 0.00 4.41
1554 1558 0.035056 GGTGCTAGTGGTTGGATGCT 60.035 55.000 0.00 0.00 0.00 3.79
1555 1559 0.322456 TGGTGCTAGTGGTTGGATGC 60.322 55.000 0.00 0.00 0.00 3.91
1556 1560 1.453155 GTGGTGCTAGTGGTTGGATG 58.547 55.000 0.00 0.00 0.00 3.51
1557 1561 0.328258 GGTGGTGCTAGTGGTTGGAT 59.672 55.000 0.00 0.00 0.00 3.41
1558 1562 1.057275 TGGTGGTGCTAGTGGTTGGA 61.057 55.000 0.00 0.00 0.00 3.53
1559 1563 0.889186 GTGGTGGTGCTAGTGGTTGG 60.889 60.000 0.00 0.00 0.00 3.77
1560 1564 0.889186 GGTGGTGGTGCTAGTGGTTG 60.889 60.000 0.00 0.00 0.00 3.77
1561 1565 1.349542 TGGTGGTGGTGCTAGTGGTT 61.350 55.000 0.00 0.00 0.00 3.67
1562 1566 1.768482 TGGTGGTGGTGCTAGTGGT 60.768 57.895 0.00 0.00 0.00 4.16
1563 1567 1.302511 GTGGTGGTGGTGCTAGTGG 60.303 63.158 0.00 0.00 0.00 4.00
1564 1568 0.108585 AAGTGGTGGTGGTGCTAGTG 59.891 55.000 0.00 0.00 0.00 2.74
1565 1569 0.108585 CAAGTGGTGGTGGTGCTAGT 59.891 55.000 0.00 0.00 0.00 2.57
1566 1570 1.237285 GCAAGTGGTGGTGGTGCTAG 61.237 60.000 0.00 0.00 32.43 3.42
1567 1571 1.228124 GCAAGTGGTGGTGGTGCTA 60.228 57.895 0.00 0.00 32.43 3.49
1568 1572 1.705002 TAGCAAGTGGTGGTGGTGCT 61.705 55.000 1.72 1.72 46.74 4.40
1569 1573 1.228124 TAGCAAGTGGTGGTGGTGC 60.228 57.895 0.00 0.00 38.75 5.01
1570 1574 0.108585 ACTAGCAAGTGGTGGTGGTG 59.891 55.000 0.00 0.00 46.42 4.17
1571 1575 2.539983 ACTAGCAAGTGGTGGTGGT 58.460 52.632 0.00 0.00 43.79 4.16
1572 1576 1.623811 AGTACTAGCAAGTGGTGGTGG 59.376 52.381 9.45 0.00 41.64 4.61
1573 1577 2.037251 ACAGTACTAGCAAGTGGTGGTG 59.963 50.000 9.45 0.00 38.75 4.17
1574 1578 2.037251 CACAGTACTAGCAAGTGGTGGT 59.963 50.000 0.00 4.88 41.93 4.16
1575 1579 2.612972 CCACAGTACTAGCAAGTGGTGG 60.613 54.545 17.27 13.55 43.57 4.61
1576 1580 2.612972 CCCACAGTACTAGCAAGTGGTG 60.613 54.545 21.53 11.88 46.34 4.17
1577 1581 1.623811 CCCACAGTACTAGCAAGTGGT 59.376 52.381 21.53 1.32 46.34 4.16
1579 1583 1.899814 TCCCCACAGTACTAGCAAGTG 59.100 52.381 0.00 0.00 36.36 3.16
1580 1584 2.180276 CTCCCCACAGTACTAGCAAGT 58.820 52.381 0.00 0.00 39.91 3.16
1581 1585 1.482593 CCTCCCCACAGTACTAGCAAG 59.517 57.143 0.00 0.00 0.00 4.01
1582 1586 1.203262 ACCTCCCCACAGTACTAGCAA 60.203 52.381 0.00 0.00 0.00 3.91
1583 1587 0.412244 ACCTCCCCACAGTACTAGCA 59.588 55.000 0.00 0.00 0.00 3.49
1584 1588 0.824759 CACCTCCCCACAGTACTAGC 59.175 60.000 0.00 0.00 0.00 3.42
1585 1589 2.233305 ACACCTCCCCACAGTACTAG 57.767 55.000 0.00 0.00 0.00 2.57
1586 1590 2.622452 GCTACACCTCCCCACAGTACTA 60.622 54.545 0.00 0.00 0.00 1.82
1587 1591 1.895866 GCTACACCTCCCCACAGTACT 60.896 57.143 0.00 0.00 0.00 2.73
1588 1592 0.535797 GCTACACCTCCCCACAGTAC 59.464 60.000 0.00 0.00 0.00 2.73
1589 1593 0.616679 GGCTACACCTCCCCACAGTA 60.617 60.000 0.00 0.00 34.51 2.74
1590 1594 1.918800 GGCTACACCTCCCCACAGT 60.919 63.158 0.00 0.00 34.51 3.55
1591 1595 1.918293 TGGCTACACCTCCCCACAG 60.918 63.158 0.00 0.00 40.22 3.66
1592 1596 2.205749 TGGCTACACCTCCCCACA 59.794 61.111 0.00 0.00 40.22 4.17
1593 1597 2.669240 GTGGCTACACCTCCCCAC 59.331 66.667 0.00 0.00 41.84 4.61
1611 1615 9.690913 CACTATAAATGGGTTCATGATATCCAT 57.309 33.333 13.72 13.72 39.63 3.41
1612 1616 8.889445 TCACTATAAATGGGTTCATGATATCCA 58.111 33.333 10.93 10.93 33.18 3.41
1613 1617 9.911788 ATCACTATAAATGGGTTCATGATATCC 57.088 33.333 0.00 0.00 33.18 2.59
1617 1621 9.818270 ATTGATCACTATAAATGGGTTCATGAT 57.182 29.630 0.00 0.00 33.18 2.45
1618 1622 9.288576 GATTGATCACTATAAATGGGTTCATGA 57.711 33.333 0.00 0.00 33.18 3.07
1619 1623 9.293404 AGATTGATCACTATAAATGGGTTCATG 57.707 33.333 0.00 0.00 33.18 3.07
1620 1624 9.512588 GAGATTGATCACTATAAATGGGTTCAT 57.487 33.333 0.00 0.00 34.56 2.57
1621 1625 8.493607 TGAGATTGATCACTATAAATGGGTTCA 58.506 33.333 0.00 0.00 0.00 3.18
1622 1626 8.908786 TGAGATTGATCACTATAAATGGGTTC 57.091 34.615 0.00 0.00 0.00 3.62
1623 1627 9.872684 ATTGAGATTGATCACTATAAATGGGTT 57.127 29.630 0.00 0.00 0.00 4.11
1630 1634 9.692749 GGAACGTATTGAGATTGATCACTATAA 57.307 33.333 0.00 0.00 0.00 0.98
1631 1635 8.304596 GGGAACGTATTGAGATTGATCACTATA 58.695 37.037 0.00 0.00 0.00 1.31
1632 1636 7.155328 GGGAACGTATTGAGATTGATCACTAT 58.845 38.462 0.00 0.00 0.00 2.12
1633 1637 6.513180 GGGAACGTATTGAGATTGATCACTA 58.487 40.000 0.00 0.00 0.00 2.74
1634 1638 5.360591 GGGAACGTATTGAGATTGATCACT 58.639 41.667 0.00 0.00 0.00 3.41
1635 1639 5.659048 GGGAACGTATTGAGATTGATCAC 57.341 43.478 0.00 0.00 0.00 3.06
1658 1662 0.874607 ACTTGGCAACGTCGTCAGAC 60.875 55.000 0.00 0.00 43.72 3.51
1659 1663 0.874175 CACTTGGCAACGTCGTCAGA 60.874 55.000 0.00 0.00 42.51 3.27
1660 1664 1.564622 CACTTGGCAACGTCGTCAG 59.435 57.895 0.00 0.00 42.51 3.51
1661 1665 1.885388 CCACTTGGCAACGTCGTCA 60.885 57.895 0.00 0.00 42.51 4.35
1662 1666 1.557443 CTCCACTTGGCAACGTCGTC 61.557 60.000 0.00 0.00 42.51 4.20
1663 1667 1.594293 CTCCACTTGGCAACGTCGT 60.594 57.895 0.00 0.00 42.51 4.34
1664 1668 2.954753 GCTCCACTTGGCAACGTCG 61.955 63.158 0.00 0.00 42.51 5.12
1665 1669 0.320421 TAGCTCCACTTGGCAACGTC 60.320 55.000 0.00 0.00 42.51 4.34
1666 1670 0.602905 GTAGCTCCACTTGGCAACGT 60.603 55.000 0.00 0.00 42.51 3.99
1667 1671 0.320771 AGTAGCTCCACTTGGCAACG 60.321 55.000 0.00 0.00 42.51 4.10
1668 1672 1.897560 AAGTAGCTCCACTTGGCAAC 58.102 50.000 0.97 0.00 37.37 4.17
1669 1673 2.656947 AAAGTAGCTCCACTTGGCAA 57.343 45.000 2.64 0.00 38.74 4.52
1670 1674 2.158682 TGAAAAGTAGCTCCACTTGGCA 60.159 45.455 2.64 2.33 38.74 4.92
1671 1675 2.504367 TGAAAAGTAGCTCCACTTGGC 58.496 47.619 2.64 0.00 38.74 4.52
1672 1676 4.616835 GCAATGAAAAGTAGCTCCACTTGG 60.617 45.833 2.64 0.00 38.74 3.61
1673 1677 4.022935 TGCAATGAAAAGTAGCTCCACTTG 60.023 41.667 2.64 0.00 38.74 3.16
1674 1678 4.144297 TGCAATGAAAAGTAGCTCCACTT 58.856 39.130 0.00 0.00 40.49 3.16
1675 1679 3.754965 TGCAATGAAAAGTAGCTCCACT 58.245 40.909 0.00 0.00 0.00 4.00
1676 1680 3.503748 ACTGCAATGAAAAGTAGCTCCAC 59.496 43.478 0.00 0.00 0.00 4.02
1677 1681 3.754965 ACTGCAATGAAAAGTAGCTCCA 58.245 40.909 0.00 0.00 0.00 3.86
1678 1682 4.479619 CAACTGCAATGAAAAGTAGCTCC 58.520 43.478 0.00 0.00 0.00 4.70
1679 1683 4.022849 ACCAACTGCAATGAAAAGTAGCTC 60.023 41.667 0.00 0.00 0.00 4.09
1680 1684 3.891366 ACCAACTGCAATGAAAAGTAGCT 59.109 39.130 0.00 0.00 0.00 3.32
1681 1685 4.243007 ACCAACTGCAATGAAAAGTAGC 57.757 40.909 0.85 0.00 0.00 3.58
1682 1686 5.473504 ACCTACCAACTGCAATGAAAAGTAG 59.526 40.000 0.85 4.30 0.00 2.57
1683 1687 5.240623 CACCTACCAACTGCAATGAAAAGTA 59.759 40.000 0.85 0.00 0.00 2.24
1684 1688 4.037923 CACCTACCAACTGCAATGAAAAGT 59.962 41.667 0.85 0.00 0.00 2.66
1685 1689 4.549458 CACCTACCAACTGCAATGAAAAG 58.451 43.478 0.85 0.00 0.00 2.27
1686 1690 3.320541 CCACCTACCAACTGCAATGAAAA 59.679 43.478 0.85 0.00 0.00 2.29
1687 1691 2.890311 CCACCTACCAACTGCAATGAAA 59.110 45.455 0.85 0.00 0.00 2.69
1688 1692 2.513753 CCACCTACCAACTGCAATGAA 58.486 47.619 0.85 0.00 0.00 2.57
1689 1693 1.271871 CCCACCTACCAACTGCAATGA 60.272 52.381 0.85 0.00 0.00 2.57
1690 1694 1.176527 CCCACCTACCAACTGCAATG 58.823 55.000 0.00 0.00 0.00 2.82
1691 1695 1.004745 CTCCCACCTACCAACTGCAAT 59.995 52.381 0.00 0.00 0.00 3.56
1692 1696 0.400213 CTCCCACCTACCAACTGCAA 59.600 55.000 0.00 0.00 0.00 4.08
1693 1697 2.066340 CTCCCACCTACCAACTGCA 58.934 57.895 0.00 0.00 0.00 4.41
1694 1698 1.377333 GCTCCCACCTACCAACTGC 60.377 63.158 0.00 0.00 0.00 4.40
1695 1699 0.693049 AAGCTCCCACCTACCAACTG 59.307 55.000 0.00 0.00 0.00 3.16
1696 1700 0.984995 GAAGCTCCCACCTACCAACT 59.015 55.000 0.00 0.00 0.00 3.16
1697 1701 0.690762 TGAAGCTCCCACCTACCAAC 59.309 55.000 0.00 0.00 0.00 3.77
1698 1702 0.690762 GTGAAGCTCCCACCTACCAA 59.309 55.000 7.72 0.00 0.00 3.67
1699 1703 2.372852 GTGAAGCTCCCACCTACCA 58.627 57.895 7.72 0.00 0.00 3.25
1706 1710 3.483587 GGAGTGGTGAAGCTCCCA 58.516 61.111 0.00 0.00 44.06 4.37
1709 1713 1.079750 GTCGGGAGTGGTGAAGCTC 60.080 63.158 0.00 0.00 0.00 4.09
1710 1714 1.194781 ATGTCGGGAGTGGTGAAGCT 61.195 55.000 0.00 0.00 0.00 3.74
1711 1715 0.321653 AATGTCGGGAGTGGTGAAGC 60.322 55.000 0.00 0.00 0.00 3.86
1712 1716 1.276421 AGAATGTCGGGAGTGGTGAAG 59.724 52.381 0.00 0.00 0.00 3.02
1713 1717 1.001974 CAGAATGTCGGGAGTGGTGAA 59.998 52.381 0.00 0.00 0.00 3.18
1714 1718 0.608130 CAGAATGTCGGGAGTGGTGA 59.392 55.000 0.00 0.00 0.00 4.02
1715 1719 0.391661 CCAGAATGTCGGGAGTGGTG 60.392 60.000 0.00 0.00 33.29 4.17
1716 1720 0.836400 ACCAGAATGTCGGGAGTGGT 60.836 55.000 1.22 0.00 35.20 4.16
1717 1721 0.108138 GACCAGAATGTCGGGAGTGG 60.108 60.000 1.22 0.00 35.20 4.00
1718 1722 3.442996 GACCAGAATGTCGGGAGTG 57.557 57.895 1.22 0.00 35.20 3.51
1725 1729 2.668457 GTGATGTGACGACCAGAATGTC 59.332 50.000 0.00 0.00 0.00 3.06
1726 1730 2.037121 TGTGATGTGACGACCAGAATGT 59.963 45.455 0.00 0.00 0.00 2.71
1727 1731 2.669924 CTGTGATGTGACGACCAGAATG 59.330 50.000 0.00 0.00 0.00 2.67
1728 1732 2.354103 CCTGTGATGTGACGACCAGAAT 60.354 50.000 0.00 0.00 0.00 2.40
1729 1733 1.000843 CCTGTGATGTGACGACCAGAA 59.999 52.381 0.00 0.00 0.00 3.02
1730 1734 0.603065 CCTGTGATGTGACGACCAGA 59.397 55.000 0.00 0.00 0.00 3.86
1731 1735 0.318441 ACCTGTGATGTGACGACCAG 59.682 55.000 0.00 0.00 0.00 4.00
1732 1736 1.623163 TACCTGTGATGTGACGACCA 58.377 50.000 0.00 0.00 0.00 4.02
1733 1737 2.607187 CTTACCTGTGATGTGACGACC 58.393 52.381 0.00 0.00 0.00 4.79
1734 1738 2.230508 TCCTTACCTGTGATGTGACGAC 59.769 50.000 0.00 0.00 0.00 4.34
1735 1739 2.521126 TCCTTACCTGTGATGTGACGA 58.479 47.619 0.00 0.00 0.00 4.20
1736 1740 3.526931 ATCCTTACCTGTGATGTGACG 57.473 47.619 0.00 0.00 0.00 4.35
1737 1741 5.003804 ACAAATCCTTACCTGTGATGTGAC 58.996 41.667 0.00 0.00 30.01 3.67
1738 1742 5.241403 ACAAATCCTTACCTGTGATGTGA 57.759 39.130 0.00 0.00 30.01 3.58
1739 1743 5.964958 AACAAATCCTTACCTGTGATGTG 57.035 39.130 0.00 0.00 31.38 3.21
1740 1744 5.278957 GCAAACAAATCCTTACCTGTGATGT 60.279 40.000 0.00 0.00 0.00 3.06
1741 1745 5.163513 GCAAACAAATCCTTACCTGTGATG 58.836 41.667 0.00 0.00 0.00 3.07
1742 1746 4.220602 GGCAAACAAATCCTTACCTGTGAT 59.779 41.667 0.00 0.00 0.00 3.06
1743 1747 3.572255 GGCAAACAAATCCTTACCTGTGA 59.428 43.478 0.00 0.00 0.00 3.58
1744 1748 3.611530 CGGCAAACAAATCCTTACCTGTG 60.612 47.826 0.00 0.00 0.00 3.66
1745 1749 2.556622 CGGCAAACAAATCCTTACCTGT 59.443 45.455 0.00 0.00 0.00 4.00
1746 1750 2.556622 ACGGCAAACAAATCCTTACCTG 59.443 45.455 0.00 0.00 0.00 4.00
1747 1751 2.556622 CACGGCAAACAAATCCTTACCT 59.443 45.455 0.00 0.00 0.00 3.08
1748 1752 2.352323 CCACGGCAAACAAATCCTTACC 60.352 50.000 0.00 0.00 0.00 2.85
1749 1753 2.295070 ACCACGGCAAACAAATCCTTAC 59.705 45.455 0.00 0.00 0.00 2.34
1750 1754 2.554893 GACCACGGCAAACAAATCCTTA 59.445 45.455 0.00 0.00 0.00 2.69
1751 1755 1.339929 GACCACGGCAAACAAATCCTT 59.660 47.619 0.00 0.00 0.00 3.36
1752 1756 0.958822 GACCACGGCAAACAAATCCT 59.041 50.000 0.00 0.00 0.00 3.24
1753 1757 0.038618 GGACCACGGCAAACAAATCC 60.039 55.000 0.00 0.00 0.00 3.01
1754 1758 0.671251 TGGACCACGGCAAACAAATC 59.329 50.000 0.00 0.00 0.00 2.17
1755 1759 0.387565 GTGGACCACGGCAAACAAAT 59.612 50.000 9.33 0.00 0.00 2.32
1756 1760 0.681564 AGTGGACCACGGCAAACAAA 60.682 50.000 18.93 0.00 39.64 2.83
1757 1761 0.180642 TAGTGGACCACGGCAAACAA 59.819 50.000 18.93 0.00 39.64 2.83
1758 1762 0.250124 CTAGTGGACCACGGCAAACA 60.250 55.000 18.93 0.00 39.64 2.83
1759 1763 1.574702 GCTAGTGGACCACGGCAAAC 61.575 60.000 28.30 12.00 39.64 2.93
1760 1764 1.302192 GCTAGTGGACCACGGCAAA 60.302 57.895 28.30 11.62 39.64 3.68
1761 1765 2.345991 GCTAGTGGACCACGGCAA 59.654 61.111 28.30 13.58 39.64 4.52
1762 1766 3.702048 GGCTAGTGGACCACGGCA 61.702 66.667 31.42 17.55 39.64 5.69
1763 1767 3.665675 CTGGCTAGTGGACCACGGC 62.666 68.421 26.57 26.57 39.64 5.68
1764 1768 2.283529 ACTGGCTAGTGGACCACGG 61.284 63.158 18.93 16.01 39.64 4.94
1765 1769 3.377656 ACTGGCTAGTGGACCACG 58.622 61.111 18.93 7.06 39.64 4.94
1773 1777 0.977395 GGTGTTCTCCACTGGCTAGT 59.023 55.000 0.00 0.00 43.94 2.57
1774 1778 0.976641 TGGTGTTCTCCACTGGCTAG 59.023 55.000 0.00 0.00 43.94 3.42
1775 1779 3.157518 TGGTGTTCTCCACTGGCTA 57.842 52.632 0.00 0.00 43.94 3.93
1776 1780 3.986054 TGGTGTTCTCCACTGGCT 58.014 55.556 0.00 0.00 43.94 4.75
1782 1786 2.110213 GCACGGTGGTGTTCTCCA 59.890 61.111 10.60 0.00 46.13 3.86
1783 1787 1.961277 CTGCACGGTGGTGTTCTCC 60.961 63.158 10.60 0.00 46.13 3.71
1784 1788 1.961277 CCTGCACGGTGGTGTTCTC 60.961 63.158 10.60 0.00 46.13 2.87
1785 1789 1.768684 ATCCTGCACGGTGGTGTTCT 61.769 55.000 10.60 0.00 46.13 3.01
1786 1790 0.889186 AATCCTGCACGGTGGTGTTC 60.889 55.000 10.60 0.00 46.13 3.18
1787 1791 1.150536 AATCCTGCACGGTGGTGTT 59.849 52.632 10.60 0.00 46.13 3.32
1788 1792 1.600636 CAATCCTGCACGGTGGTGT 60.601 57.895 10.60 0.00 46.13 4.16
1798 1802 1.728490 GGACCAATCCGCAATCCTGC 61.728 60.000 0.00 0.00 45.75 4.85
1799 1803 2.408333 GGACCAATCCGCAATCCTG 58.592 57.895 0.00 0.00 34.48 3.86
1800 1804 4.986467 GGACCAATCCGCAATCCT 57.014 55.556 0.00 0.00 34.48 3.24
1807 1811 6.835320 ACAAAATGATGTGAGGACCAATCCG 61.835 44.000 0.00 0.00 40.21 4.18
1808 1812 4.463891 ACAAAATGATGTGAGGACCAATCC 59.536 41.667 0.00 0.00 37.43 3.01
1809 1813 5.649782 ACAAAATGATGTGAGGACCAATC 57.350 39.130 0.00 0.00 30.82 2.67
1810 1814 6.423776 AAACAAAATGATGTGAGGACCAAT 57.576 33.333 0.00 0.00 32.81 3.16
1811 1815 5.867903 AAACAAAATGATGTGAGGACCAA 57.132 34.783 0.00 0.00 32.81 3.67
1812 1816 5.599732 CAAAACAAAATGATGTGAGGACCA 58.400 37.500 0.00 0.00 32.81 4.02
1813 1817 4.448732 GCAAAACAAAATGATGTGAGGACC 59.551 41.667 0.00 0.00 32.81 4.46
1814 1818 5.176223 CAGCAAAACAAAATGATGTGAGGAC 59.824 40.000 0.00 0.00 32.81 3.85
1815 1819 5.291178 CAGCAAAACAAAATGATGTGAGGA 58.709 37.500 0.00 0.00 32.81 3.71
1816 1820 4.084223 GCAGCAAAACAAAATGATGTGAGG 60.084 41.667 0.00 0.00 35.47 3.86
1817 1821 4.084223 GGCAGCAAAACAAAATGATGTGAG 60.084 41.667 0.00 0.00 35.47 3.51
1818 1822 3.808726 GGCAGCAAAACAAAATGATGTGA 59.191 39.130 0.00 0.00 35.47 3.58
1819 1823 3.810941 AGGCAGCAAAACAAAATGATGTG 59.189 39.130 0.00 0.00 35.47 3.21
1820 1824 3.810941 CAGGCAGCAAAACAAAATGATGT 59.189 39.130 0.00 0.00 35.47 3.06
1821 1825 3.187637 CCAGGCAGCAAAACAAAATGATG 59.812 43.478 0.00 0.00 36.10 3.07
1822 1826 3.181452 ACCAGGCAGCAAAACAAAATGAT 60.181 39.130 0.00 0.00 0.00 2.45
1823 1827 2.170187 ACCAGGCAGCAAAACAAAATGA 59.830 40.909 0.00 0.00 0.00 2.57
1824 1828 2.563702 ACCAGGCAGCAAAACAAAATG 58.436 42.857 0.00 0.00 0.00 2.32
1843 1847 1.557443 CTTGTCCACGACGGCAGAAC 61.557 60.000 0.00 0.00 34.95 3.01
1852 1856 3.033764 GCGCGTTCTTGTCCACGA 61.034 61.111 8.43 0.00 38.76 4.35
1854 1858 3.000080 CTCGCGCGTTCTTGTCCAC 62.000 63.158 30.98 0.00 0.00 4.02
1863 1867 3.036084 CCAACAGTCTCGCGCGTT 61.036 61.111 30.98 12.89 0.00 4.84
1867 1871 3.175240 CGCTCCAACAGTCTCGCG 61.175 66.667 0.00 0.00 34.50 5.87
1888 1893 3.058570 CGACAACGTCAAATCCCAAATGA 60.059 43.478 0.00 0.00 32.09 2.57
1905 1910 1.006758 AGGGAGGATAGTCACCGACAA 59.993 52.381 0.00 0.00 34.60 3.18
2001 2006 1.670087 CCCGCACAAGTAGACAGTCAG 60.670 57.143 2.66 0.00 0.00 3.51
2041 2046 1.048601 ATGGTCTTGACGTGAGGTGT 58.951 50.000 0.00 0.00 0.00 4.16
2083 2088 3.353836 CGCCACCACTTTCCACGG 61.354 66.667 0.00 0.00 0.00 4.94
2125 2140 7.826744 TCAACAATCTACAACAGCAACCATATA 59.173 33.333 0.00 0.00 0.00 0.86
2197 2214 5.163864 CGTCAAACATGACTAAAGCTATGCA 60.164 40.000 0.00 0.00 36.71 3.96
2207 2224 5.431420 AATTGCAACGTCAAACATGACTA 57.569 34.783 0.00 0.00 36.71 2.59
2208 2225 3.988379 ATTGCAACGTCAAACATGACT 57.012 38.095 0.00 0.00 36.71 3.41
2221 2238 2.500509 TCACACCGGAAAATTGCAAC 57.499 45.000 9.46 0.00 0.00 4.17
2314 2339 7.092137 CTCAAAATGGAGCATCAAGTGATAA 57.908 36.000 0.00 0.00 36.25 1.75
2367 2392 9.787435 ATTAACACATACAAGAGGTTAAAGACA 57.213 29.630 0.00 0.00 37.44 3.41
2374 2399 9.959721 ATGTAGAATTAACACATACAAGAGGTT 57.040 29.630 0.00 0.00 31.26 3.50
2375 2400 9.601217 GATGTAGAATTAACACATACAAGAGGT 57.399 33.333 0.00 0.00 33.16 3.85
2376 2401 9.823647 AGATGTAGAATTAACACATACAAGAGG 57.176 33.333 0.00 0.00 33.16 3.69
2385 2410 9.225436 TGCATTAACAGATGTAGAATTAACACA 57.775 29.630 0.00 0.00 0.00 3.72
2386 2411 9.708222 CTGCATTAACAGATGTAGAATTAACAC 57.292 33.333 0.00 0.00 40.77 3.32
2387 2412 9.448438 ACTGCATTAACAGATGTAGAATTAACA 57.552 29.630 9.41 0.00 40.77 2.41
2388 2413 9.708222 CACTGCATTAACAGATGTAGAATTAAC 57.292 33.333 9.41 0.00 40.77 2.01
2389 2414 8.397906 GCACTGCATTAACAGATGTAGAATTAA 58.602 33.333 9.41 0.00 40.77 1.40
2390 2415 7.552330 TGCACTGCATTAACAGATGTAGAATTA 59.448 33.333 0.00 0.00 40.77 1.40
2391 2416 6.375174 TGCACTGCATTAACAGATGTAGAATT 59.625 34.615 0.00 0.00 40.77 2.17
2392 2417 5.882000 TGCACTGCATTAACAGATGTAGAAT 59.118 36.000 0.00 0.00 40.77 2.40
2393 2418 5.244755 TGCACTGCATTAACAGATGTAGAA 58.755 37.500 0.00 0.00 40.77 2.10
2394 2419 4.831107 TGCACTGCATTAACAGATGTAGA 58.169 39.130 0.00 0.00 40.77 2.59
2423 2448 9.915629 TGAAAGCTTACAAAGTTTGACTTAAAA 57.084 25.926 22.23 5.61 37.47 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.