Multiple sequence alignment - TraesCS7B01G497600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G497600 chr7B 100.000 2137 0 0 719 2855 748323476 748321340 0.000000e+00 3947
1 TraesCS7B01G497600 chr7B 92.626 1668 91 11 1212 2855 700098305 700099964 0.000000e+00 2370
2 TraesCS7B01G497600 chr7B 89.947 945 53 17 1759 2666 303129928 303128989 0.000000e+00 1181
3 TraesCS7B01G497600 chr7B 100.000 459 0 0 1 459 748324194 748323736 0.000000e+00 848
4 TraesCS7B01G497600 chr7B 91.436 362 27 2 859 1216 700084281 700084642 7.110000e-136 494
5 TraesCS7B01G497600 chr7B 82.043 323 29 12 2369 2666 748322082 748321764 6.110000e-62 248
6 TraesCS7B01G497600 chr7B 95.833 72 2 1 865 936 260967723 260967653 6.460000e-22 115
7 TraesCS7B01G497600 chr1B 91.771 1920 96 25 781 2666 274034197 274036088 0.000000e+00 2614
8 TraesCS7B01G497600 chr1B 91.684 1479 93 10 828 2292 258370846 258369384 0.000000e+00 2023
9 TraesCS7B01G497600 chr1B 89.633 762 46 10 2113 2855 258368703 258367956 0.000000e+00 939
10 TraesCS7B01G497600 chr1B 89.021 756 57 8 2113 2855 274035781 274036523 0.000000e+00 913
11 TraesCS7B01G497600 chr1B 91.534 378 13 6 2306 2666 258368766 258368391 1.180000e-138 503
12 TraesCS7B01G497600 chr1B 88.679 159 12 4 2669 2824 523383340 523383495 3.750000e-44 189
13 TraesCS7B01G497600 chr1B 94.355 124 2 5 2545 2666 258368761 258368641 4.860000e-43 185
14 TraesCS7B01G497600 chrUn 90.590 1764 115 21 794 2537 50339599 50341331 0.000000e+00 2290
15 TraesCS7B01G497600 chrUn 92.830 795 37 8 1759 2537 118864008 118863218 0.000000e+00 1134
16 TraesCS7B01G497600 chrUn 92.652 558 33 6 2305 2855 50341634 50342190 0.000000e+00 797
17 TraesCS7B01G497600 chrUn 93.429 487 21 3 2380 2855 118862835 118862349 0.000000e+00 712
18 TraesCS7B01G497600 chr6B 92.802 1292 79 4 1199 2476 262672345 262671054 0.000000e+00 1858
19 TraesCS7B01G497600 chr6B 92.337 796 44 5 1759 2537 389781027 389781822 0.000000e+00 1116
20 TraesCS7B01G497600 chr6B 88.514 949 53 22 1759 2657 282418192 282417250 0.000000e+00 1098
21 TraesCS7B01G497600 chr6B 91.054 816 52 10 930 1742 122957247 122956450 0.000000e+00 1083
22 TraesCS7B01G497600 chr6B 93.085 564 28 3 2303 2855 262670084 262669521 0.000000e+00 815
23 TraesCS7B01G497600 chr6B 98.519 135 2 0 791 925 262672476 262672342 3.680000e-59 239
24 TraesCS7B01G497600 chr3B 92.263 866 62 2 790 1655 307379064 307379924 0.000000e+00 1223
25 TraesCS7B01G497600 chr3B 91.962 423 20 7 2242 2650 307380017 307380439 5.300000e-162 580
26 TraesCS7B01G497600 chr3B 91.473 129 5 3 743 866 192617405 192617278 3.780000e-39 172
27 TraesCS7B01G497600 chr2B 90.675 933 58 16 1759 2666 315027049 315027977 0.000000e+00 1214
28 TraesCS7B01G497600 chr2B 91.831 710 39 7 1759 2454 278452144 278451440 0.000000e+00 972
29 TraesCS7B01G497600 chr2B 92.678 519 33 3 1938 2454 365079 364564 0.000000e+00 743
30 TraesCS7B01G497600 chr2B 94.030 134 5 3 733 866 196614303 196614173 1.730000e-47 200
31 TraesCS7B01G497600 chr2B 95.775 71 2 1 865 935 13860513 13860582 2.320000e-21 113
32 TraesCS7B01G497600 chr2B 94.444 72 3 1 865 936 350669222 350669152 3.010000e-20 110
33 TraesCS7B01G497600 chr4B 91.702 711 40 8 1759 2454 269650724 269650018 0.000000e+00 968
34 TraesCS7B01G497600 chr6D 89.103 780 57 16 973 1742 48513950 48514711 0.000000e+00 944
35 TraesCS7B01G497600 chr6A 87.763 760 63 14 992 1742 66302909 66302171 0.000000e+00 861
36 TraesCS7B01G497600 chr1D 96.257 187 7 0 2669 2855 396275456 396275642 9.940000e-80 307
37 TraesCS7B01G497600 chr1A 94.118 187 11 0 2669 2855 489178881 489178695 4.660000e-73 285
38 TraesCS7B01G497600 chr2A 96.396 111 3 1 756 866 430464859 430464750 6.280000e-42 182
39 TraesCS7B01G497600 chr5B 88.806 134 8 5 733 866 523505285 523505159 1.060000e-34 158
40 TraesCS7B01G497600 chr5B 88.636 132 12 3 735 866 523552456 523552328 1.060000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G497600 chr7B 748321340 748324194 2854 True 1681.000000 3947 94.014333 1 2855 3 chr7B.!!$R3 2854
1 TraesCS7B01G497600 chr7B 700098305 700099964 1659 False 2370.000000 2370 92.626000 1212 2855 1 chr7B.!!$F2 1643
2 TraesCS7B01G497600 chr7B 303128989 303129928 939 True 1181.000000 1181 89.947000 1759 2666 1 chr7B.!!$R2 907
3 TraesCS7B01G497600 chr1B 274034197 274036523 2326 False 1763.500000 2614 90.396000 781 2855 2 chr1B.!!$F2 2074
4 TraesCS7B01G497600 chr1B 258367956 258370846 2890 True 912.500000 2023 91.801500 828 2855 4 chr1B.!!$R1 2027
5 TraesCS7B01G497600 chrUn 50339599 50342190 2591 False 1543.500000 2290 91.621000 794 2855 2 chrUn.!!$F1 2061
6 TraesCS7B01G497600 chrUn 118862349 118864008 1659 True 923.000000 1134 93.129500 1759 2855 2 chrUn.!!$R1 1096
7 TraesCS7B01G497600 chr6B 389781027 389781822 795 False 1116.000000 1116 92.337000 1759 2537 1 chr6B.!!$F1 778
8 TraesCS7B01G497600 chr6B 282417250 282418192 942 True 1098.000000 1098 88.514000 1759 2657 1 chr6B.!!$R2 898
9 TraesCS7B01G497600 chr6B 122956450 122957247 797 True 1083.000000 1083 91.054000 930 1742 1 chr6B.!!$R1 812
10 TraesCS7B01G497600 chr6B 262669521 262672476 2955 True 970.666667 1858 94.802000 791 2855 3 chr6B.!!$R3 2064
11 TraesCS7B01G497600 chr3B 307379064 307380439 1375 False 901.500000 1223 92.112500 790 2650 2 chr3B.!!$F1 1860
12 TraesCS7B01G497600 chr2B 315027049 315027977 928 False 1214.000000 1214 90.675000 1759 2666 1 chr2B.!!$F2 907
13 TraesCS7B01G497600 chr2B 278451440 278452144 704 True 972.000000 972 91.831000 1759 2454 1 chr2B.!!$R3 695
14 TraesCS7B01G497600 chr2B 364564 365079 515 True 743.000000 743 92.678000 1938 2454 1 chr2B.!!$R1 516
15 TraesCS7B01G497600 chr4B 269650018 269650724 706 True 968.000000 968 91.702000 1759 2454 1 chr4B.!!$R1 695
16 TraesCS7B01G497600 chr6D 48513950 48514711 761 False 944.000000 944 89.103000 973 1742 1 chr6D.!!$F1 769
17 TraesCS7B01G497600 chr6A 66302171 66302909 738 True 861.000000 861 87.763000 992 1742 1 chr6A.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.028110 GCTCGATGGCGATGTTTTCC 59.972 55.0 0.0 0.00 46.80 3.13 F
415 416 0.037975 AAGGCAACCCGTACGTACAG 60.038 55.0 24.5 17.12 35.76 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1673 0.036010 GGGCTTGCTGTAGAAGAGCA 60.036 55.0 0.0 0.0 44.75 4.26 R
2311 2710 2.538512 ACCTTGTACTTCCGTGGAAC 57.461 50.0 0.0 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.342279 CGAGCCCTCGTTGGACAA 59.658 61.111 9.41 0.00 46.99 3.18
25 26 1.301401 CGAGCCCTCGTTGGACAAA 60.301 57.895 9.41 0.00 46.99 2.83
26 27 0.673644 CGAGCCCTCGTTGGACAAAT 60.674 55.000 9.41 0.00 46.99 2.32
27 28 1.534729 GAGCCCTCGTTGGACAAATT 58.465 50.000 0.00 0.00 38.35 1.82
28 29 1.886542 GAGCCCTCGTTGGACAAATTT 59.113 47.619 0.00 0.00 38.35 1.82
29 30 1.613437 AGCCCTCGTTGGACAAATTTG 59.387 47.619 16.67 16.67 38.35 2.32
30 31 1.339929 GCCCTCGTTGGACAAATTTGT 59.660 47.619 23.49 23.49 45.65 2.83
72 73 3.644606 CTGCTGCCAGTCCACCCT 61.645 66.667 0.00 0.00 34.31 4.34
73 74 3.914579 CTGCTGCCAGTCCACCCTG 62.915 68.421 0.00 0.00 34.31 4.45
75 76 3.644606 CTGCCAGTCCACCCTGCT 61.645 66.667 0.00 0.00 0.00 4.24
76 77 3.177884 TGCCAGTCCACCCTGCTT 61.178 61.111 0.00 0.00 0.00 3.91
77 78 2.360475 GCCAGTCCACCCTGCTTC 60.360 66.667 0.00 0.00 0.00 3.86
78 79 2.352805 CCAGTCCACCCTGCTTCC 59.647 66.667 0.00 0.00 0.00 3.46
79 80 2.046892 CAGTCCACCCTGCTTCCG 60.047 66.667 0.00 0.00 0.00 4.30
80 81 4.021925 AGTCCACCCTGCTTCCGC 62.022 66.667 0.00 0.00 0.00 5.54
81 82 4.021925 GTCCACCCTGCTTCCGCT 62.022 66.667 0.00 0.00 36.97 5.52
82 83 2.284331 TCCACCCTGCTTCCGCTA 60.284 61.111 0.00 0.00 36.97 4.26
83 84 2.187946 CCACCCTGCTTCCGCTAG 59.812 66.667 0.00 0.00 36.97 3.42
84 85 2.359169 CCACCCTGCTTCCGCTAGA 61.359 63.158 0.00 0.00 36.97 2.43
85 86 1.596934 CACCCTGCTTCCGCTAGAA 59.403 57.895 0.00 0.00 36.97 2.10
86 87 0.179000 CACCCTGCTTCCGCTAGAAT 59.821 55.000 0.00 0.00 36.97 2.40
87 88 0.466124 ACCCTGCTTCCGCTAGAATC 59.534 55.000 0.00 0.00 36.97 2.52
88 89 0.250081 CCCTGCTTCCGCTAGAATCC 60.250 60.000 0.00 0.00 36.97 3.01
89 90 0.598680 CCTGCTTCCGCTAGAATCCG 60.599 60.000 0.00 0.00 36.97 4.18
90 91 0.598680 CTGCTTCCGCTAGAATCCGG 60.599 60.000 0.00 0.00 45.64 5.14
98 99 3.658351 CGCTAGAATCCGGAAACAAAG 57.342 47.619 9.01 8.51 0.00 2.77
99 100 3.000727 CGCTAGAATCCGGAAACAAAGT 58.999 45.455 9.01 0.00 0.00 2.66
100 101 3.181520 CGCTAGAATCCGGAAACAAAGTG 60.182 47.826 9.01 9.95 0.00 3.16
101 102 4.000988 GCTAGAATCCGGAAACAAAGTGA 58.999 43.478 9.01 0.00 0.00 3.41
102 103 4.142881 GCTAGAATCCGGAAACAAAGTGAC 60.143 45.833 9.01 0.00 0.00 3.67
103 104 3.146847 AGAATCCGGAAACAAAGTGACC 58.853 45.455 9.01 0.00 0.00 4.02
104 105 2.649531 ATCCGGAAACAAAGTGACCA 57.350 45.000 9.01 0.00 0.00 4.02
105 106 2.649531 TCCGGAAACAAAGTGACCAT 57.350 45.000 0.00 0.00 0.00 3.55
106 107 2.226330 TCCGGAAACAAAGTGACCATG 58.774 47.619 0.00 0.00 0.00 3.66
107 108 1.269448 CCGGAAACAAAGTGACCATGG 59.731 52.381 11.19 11.19 0.00 3.66
108 109 2.226330 CGGAAACAAAGTGACCATGGA 58.774 47.619 21.47 0.00 0.00 3.41
109 110 2.226437 CGGAAACAAAGTGACCATGGAG 59.774 50.000 21.47 1.41 0.00 3.86
110 111 3.486383 GGAAACAAAGTGACCATGGAGA 58.514 45.455 21.47 0.13 0.00 3.71
111 112 4.082125 GGAAACAAAGTGACCATGGAGAT 58.918 43.478 21.47 0.00 0.00 2.75
112 113 4.082571 GGAAACAAAGTGACCATGGAGATG 60.083 45.833 21.47 10.53 0.00 2.90
113 114 4.371624 AACAAAGTGACCATGGAGATGA 57.628 40.909 21.47 0.00 0.00 2.92
114 115 4.371624 ACAAAGTGACCATGGAGATGAA 57.628 40.909 21.47 0.00 0.00 2.57
115 116 4.074970 ACAAAGTGACCATGGAGATGAAC 58.925 43.478 21.47 6.91 0.00 3.18
116 117 4.202503 ACAAAGTGACCATGGAGATGAACT 60.203 41.667 21.47 9.10 0.00 3.01
117 118 5.013079 ACAAAGTGACCATGGAGATGAACTA 59.987 40.000 21.47 0.00 0.00 2.24
118 119 4.744795 AGTGACCATGGAGATGAACTAC 57.255 45.455 21.47 3.66 0.00 2.73
119 120 4.357325 AGTGACCATGGAGATGAACTACT 58.643 43.478 21.47 5.84 0.00 2.57
120 121 5.519808 AGTGACCATGGAGATGAACTACTA 58.480 41.667 21.47 0.00 0.00 1.82
121 122 6.139671 AGTGACCATGGAGATGAACTACTAT 58.860 40.000 21.47 0.00 0.00 2.12
122 123 6.041409 AGTGACCATGGAGATGAACTACTATG 59.959 42.308 21.47 0.00 0.00 2.23
123 124 6.040955 GTGACCATGGAGATGAACTACTATGA 59.959 42.308 21.47 0.00 0.00 2.15
124 125 6.040955 TGACCATGGAGATGAACTACTATGAC 59.959 42.308 21.47 0.00 0.00 3.06
125 126 5.305644 ACCATGGAGATGAACTACTATGACC 59.694 44.000 21.47 0.00 0.00 4.02
126 127 5.305386 CCATGGAGATGAACTACTATGACCA 59.695 44.000 5.56 0.00 0.00 4.02
127 128 5.854010 TGGAGATGAACTACTATGACCAC 57.146 43.478 0.00 0.00 0.00 4.16
128 129 4.338400 TGGAGATGAACTACTATGACCACG 59.662 45.833 0.00 0.00 0.00 4.94
129 130 4.579340 GGAGATGAACTACTATGACCACGA 59.421 45.833 0.00 0.00 0.00 4.35
130 131 5.502153 AGATGAACTACTATGACCACGAC 57.498 43.478 0.00 0.00 0.00 4.34
131 132 5.194432 AGATGAACTACTATGACCACGACT 58.806 41.667 0.00 0.00 0.00 4.18
132 133 4.696899 TGAACTACTATGACCACGACTG 57.303 45.455 0.00 0.00 0.00 3.51
133 134 3.119602 TGAACTACTATGACCACGACTGC 60.120 47.826 0.00 0.00 0.00 4.40
134 135 2.443416 ACTACTATGACCACGACTGCA 58.557 47.619 0.00 0.00 0.00 4.41
135 136 3.024547 ACTACTATGACCACGACTGCAT 58.975 45.455 0.00 0.00 0.00 3.96
136 137 2.586258 ACTATGACCACGACTGCATC 57.414 50.000 0.00 0.00 0.00 3.91
137 138 2.103373 ACTATGACCACGACTGCATCT 58.897 47.619 0.00 0.00 0.00 2.90
138 139 3.288092 ACTATGACCACGACTGCATCTA 58.712 45.455 0.00 0.00 0.00 1.98
139 140 2.586258 ATGACCACGACTGCATCTAC 57.414 50.000 0.00 0.00 0.00 2.59
140 141 0.170339 TGACCACGACTGCATCTACG 59.830 55.000 0.00 0.00 0.00 3.51
141 142 1.140407 GACCACGACTGCATCTACGC 61.140 60.000 0.00 0.00 0.00 4.42
142 143 1.878522 CCACGACTGCATCTACGCC 60.879 63.158 0.00 0.00 0.00 5.68
143 144 1.153842 CACGACTGCATCTACGCCA 60.154 57.895 0.00 0.00 0.00 5.69
144 145 0.528466 CACGACTGCATCTACGCCAT 60.528 55.000 0.00 0.00 0.00 4.40
145 146 0.528466 ACGACTGCATCTACGCCATG 60.528 55.000 0.00 0.00 0.00 3.66
146 147 0.528466 CGACTGCATCTACGCCATGT 60.528 55.000 0.00 0.00 0.00 3.21
147 148 1.656652 GACTGCATCTACGCCATGTT 58.343 50.000 0.00 0.00 0.00 2.71
148 149 1.594862 GACTGCATCTACGCCATGTTC 59.405 52.381 0.00 0.00 0.00 3.18
149 150 0.578683 CTGCATCTACGCCATGTTCG 59.421 55.000 0.00 3.46 0.00 3.95
150 151 0.108377 TGCATCTACGCCATGTTCGT 60.108 50.000 13.50 13.50 43.20 3.85
151 152 0.301687 GCATCTACGCCATGTTCGTG 59.698 55.000 17.14 9.42 40.69 4.35
152 153 0.930310 CATCTACGCCATGTTCGTGG 59.070 55.000 17.14 14.85 40.69 4.94
153 154 2.268999 TCTACGCCATGTTCGTGGA 58.731 52.632 15.96 15.96 43.34 4.02
154 155 0.108992 TCTACGCCATGTTCGTGGAC 60.109 55.000 15.96 5.58 41.32 4.02
155 156 0.389296 CTACGCCATGTTCGTGGACA 60.389 55.000 17.14 0.69 42.02 4.02
156 157 0.033642 TACGCCATGTTCGTGGACAA 59.966 50.000 17.14 0.00 42.02 3.18
157 158 1.227999 ACGCCATGTTCGTGGACAAG 61.228 55.000 14.40 5.34 42.02 3.16
158 159 1.227999 CGCCATGTTCGTGGACAAGT 61.228 55.000 14.40 0.00 42.02 3.16
159 160 0.517316 GCCATGTTCGTGGACAAGTC 59.483 55.000 14.40 0.00 42.02 3.01
160 161 1.877637 CCATGTTCGTGGACAAGTCA 58.122 50.000 5.20 0.00 42.02 3.41
161 162 2.426522 CCATGTTCGTGGACAAGTCAT 58.573 47.619 5.20 0.00 42.02 3.06
162 163 2.160219 CCATGTTCGTGGACAAGTCATG 59.840 50.000 5.20 13.59 42.02 3.07
163 164 1.877637 TGTTCGTGGACAAGTCATGG 58.122 50.000 2.29 0.00 0.00 3.66
164 165 1.140052 TGTTCGTGGACAAGTCATGGT 59.860 47.619 2.29 0.00 0.00 3.55
165 166 2.365941 TGTTCGTGGACAAGTCATGGTA 59.634 45.455 2.29 0.00 0.00 3.25
166 167 2.735134 GTTCGTGGACAAGTCATGGTAC 59.265 50.000 2.29 0.00 0.00 3.34
167 168 7.479760 ATGTTCGTGGACAAGTCATGGTACA 62.480 44.000 2.29 1.70 36.24 2.90
179 180 3.305709 TGGTACAGCTTCACACTGC 57.694 52.632 0.00 0.00 38.79 4.40
180 181 0.467804 TGGTACAGCTTCACACTGCA 59.532 50.000 0.00 0.00 38.79 4.41
181 182 1.151668 GGTACAGCTTCACACTGCAG 58.848 55.000 13.48 13.48 38.79 4.41
182 183 1.151668 GTACAGCTTCACACTGCAGG 58.848 55.000 19.93 9.66 38.79 4.85
183 184 1.047801 TACAGCTTCACACTGCAGGA 58.952 50.000 19.93 2.44 38.79 3.86
184 185 0.250209 ACAGCTTCACACTGCAGGAG 60.250 55.000 19.93 12.77 38.79 3.69
185 186 1.302351 AGCTTCACACTGCAGGAGC 60.302 57.895 19.93 17.34 42.57 4.70
186 187 1.302351 GCTTCACACTGCAGGAGCT 60.302 57.895 19.93 0.00 42.74 4.09
187 188 1.297456 GCTTCACACTGCAGGAGCTC 61.297 60.000 19.93 4.71 42.74 4.09
188 189 1.005748 TTCACACTGCAGGAGCTCG 60.006 57.895 19.93 3.04 42.74 5.03
189 190 1.463553 TTCACACTGCAGGAGCTCGA 61.464 55.000 19.93 5.33 42.74 4.04
190 191 1.217511 CACACTGCAGGAGCTCGAT 59.782 57.895 19.93 0.00 42.74 3.59
191 192 1.082679 CACACTGCAGGAGCTCGATG 61.083 60.000 19.93 10.32 42.74 3.84
192 193 1.521010 CACTGCAGGAGCTCGATGG 60.521 63.158 19.93 6.13 42.74 3.51
193 194 2.588314 CTGCAGGAGCTCGATGGC 60.588 66.667 16.64 13.17 42.74 4.40
194 195 4.519437 TGCAGGAGCTCGATGGCG 62.519 66.667 16.64 0.22 42.74 5.69
195 196 4.212913 GCAGGAGCTCGATGGCGA 62.213 66.667 16.64 0.00 45.71 5.54
196 197 2.733301 CAGGAGCTCGATGGCGAT 59.267 61.111 7.83 0.00 46.80 4.58
197 198 1.664017 CAGGAGCTCGATGGCGATG 60.664 63.158 7.83 0.00 46.80 3.84
198 199 2.130426 AGGAGCTCGATGGCGATGT 61.130 57.895 7.83 0.00 46.80 3.06
199 200 1.227380 GGAGCTCGATGGCGATGTT 60.227 57.895 7.83 0.00 46.80 2.71
200 201 0.811616 GGAGCTCGATGGCGATGTTT 60.812 55.000 7.83 0.00 46.80 2.83
201 202 1.009829 GAGCTCGATGGCGATGTTTT 58.990 50.000 0.00 0.00 46.80 2.43
202 203 1.004504 GAGCTCGATGGCGATGTTTTC 60.005 52.381 0.00 0.00 46.80 2.29
203 204 0.028110 GCTCGATGGCGATGTTTTCC 59.972 55.000 0.00 0.00 46.80 3.13
204 205 1.656652 CTCGATGGCGATGTTTTCCT 58.343 50.000 0.00 0.00 46.80 3.36
205 206 1.594862 CTCGATGGCGATGTTTTCCTC 59.405 52.381 0.00 0.00 46.80 3.71
206 207 0.657840 CGATGGCGATGTTTTCCTCC 59.342 55.000 0.00 0.00 40.82 4.30
207 208 0.657840 GATGGCGATGTTTTCCTCCG 59.342 55.000 0.00 0.00 0.00 4.63
208 209 1.376609 ATGGCGATGTTTTCCTCCGC 61.377 55.000 0.00 0.00 44.45 5.54
209 210 2.038269 GGCGATGTTTTCCTCCGCA 61.038 57.895 0.00 0.00 46.64 5.69
210 211 1.425428 GCGATGTTTTCCTCCGCAG 59.575 57.895 0.00 0.00 44.55 5.18
225 226 1.793258 CGCAGGAATGATGCTAGAGG 58.207 55.000 0.00 0.00 41.61 3.69
226 227 1.607509 CGCAGGAATGATGCTAGAGGG 60.608 57.143 0.00 0.00 41.61 4.30
227 228 1.271271 GCAGGAATGATGCTAGAGGGG 60.271 57.143 0.00 0.00 40.59 4.79
228 229 2.053244 CAGGAATGATGCTAGAGGGGT 58.947 52.381 0.00 0.00 0.00 4.95
229 230 2.053244 AGGAATGATGCTAGAGGGGTG 58.947 52.381 0.00 0.00 0.00 4.61
230 231 1.072965 GGAATGATGCTAGAGGGGTGG 59.927 57.143 0.00 0.00 0.00 4.61
231 232 0.475906 AATGATGCTAGAGGGGTGGC 59.524 55.000 0.00 0.00 0.00 5.01
232 233 1.422161 ATGATGCTAGAGGGGTGGCC 61.422 60.000 0.00 0.00 0.00 5.36
233 234 3.164269 ATGCTAGAGGGGTGGCCG 61.164 66.667 0.00 0.00 0.00 6.13
234 235 4.715130 TGCTAGAGGGGTGGCCGT 62.715 66.667 0.00 0.00 0.00 5.68
235 236 3.400054 GCTAGAGGGGTGGCCGTT 61.400 66.667 0.00 0.00 0.00 4.44
236 237 2.584608 CTAGAGGGGTGGCCGTTG 59.415 66.667 0.00 0.00 0.00 4.10
237 238 2.203877 TAGAGGGGTGGCCGTTGT 60.204 61.111 0.00 0.00 0.00 3.32
238 239 2.521958 CTAGAGGGGTGGCCGTTGTG 62.522 65.000 0.00 0.00 0.00 3.33
243 244 4.572571 GGTGGCCGTTGTGGTGGA 62.573 66.667 0.00 0.00 41.21 4.02
244 245 3.284449 GTGGCCGTTGTGGTGGAC 61.284 66.667 0.00 0.00 41.21 4.02
245 246 3.484806 TGGCCGTTGTGGTGGACT 61.485 61.111 0.00 0.00 41.21 3.85
246 247 2.203294 GGCCGTTGTGGTGGACTT 60.203 61.111 0.00 0.00 41.21 3.01
247 248 2.258726 GGCCGTTGTGGTGGACTTC 61.259 63.158 0.00 0.00 41.21 3.01
248 249 2.604174 GCCGTTGTGGTGGACTTCG 61.604 63.158 0.00 0.00 41.21 3.79
249 250 1.227438 CCGTTGTGGTGGACTTCGT 60.227 57.895 0.00 0.00 0.00 3.85
250 251 1.219522 CCGTTGTGGTGGACTTCGTC 61.220 60.000 0.00 0.00 0.00 4.20
251 252 1.545614 CGTTGTGGTGGACTTCGTCG 61.546 60.000 0.00 0.00 32.65 5.12
252 253 0.529119 GTTGTGGTGGACTTCGTCGT 60.529 55.000 0.00 0.00 32.65 4.34
253 254 0.249155 TTGTGGTGGACTTCGTCGTC 60.249 55.000 0.00 0.00 32.65 4.20
259 260 2.963371 GACTTCGTCGTCCAGGCT 59.037 61.111 0.00 0.00 0.00 4.58
260 261 2.177950 GACTTCGTCGTCCAGGCTA 58.822 57.895 0.00 0.00 0.00 3.93
261 262 0.524862 GACTTCGTCGTCCAGGCTAA 59.475 55.000 0.00 0.00 0.00 3.09
262 263 0.243095 ACTTCGTCGTCCAGGCTAAC 59.757 55.000 0.00 0.00 0.00 2.34
263 264 0.458025 CTTCGTCGTCCAGGCTAACC 60.458 60.000 0.00 0.00 0.00 2.85
264 265 1.180456 TTCGTCGTCCAGGCTAACCA 61.180 55.000 0.00 0.00 39.06 3.67
265 266 0.968901 TCGTCGTCCAGGCTAACCAT 60.969 55.000 0.00 0.00 39.06 3.55
266 267 0.108329 CGTCGTCCAGGCTAACCATT 60.108 55.000 0.00 0.00 39.06 3.16
267 268 1.653151 GTCGTCCAGGCTAACCATTC 58.347 55.000 0.00 0.00 39.06 2.67
268 269 0.539986 TCGTCCAGGCTAACCATTCC 59.460 55.000 0.00 0.00 39.06 3.01
269 270 0.541863 CGTCCAGGCTAACCATTCCT 59.458 55.000 0.00 0.00 39.06 3.36
270 271 1.743772 CGTCCAGGCTAACCATTCCTG 60.744 57.143 0.00 0.00 45.24 3.86
271 272 0.255890 TCCAGGCTAACCATTCCTGC 59.744 55.000 2.15 0.00 44.52 4.85
272 273 0.753111 CCAGGCTAACCATTCCTGCC 60.753 60.000 2.15 0.00 44.52 4.85
273 274 0.753111 CAGGCTAACCATTCCTGCCC 60.753 60.000 0.00 0.00 44.19 5.36
274 275 1.823899 GGCTAACCATTCCTGCCCG 60.824 63.158 0.00 0.00 37.81 6.13
275 276 2.481471 GCTAACCATTCCTGCCCGC 61.481 63.158 0.00 0.00 0.00 6.13
276 277 1.224592 CTAACCATTCCTGCCCGCT 59.775 57.895 0.00 0.00 0.00 5.52
277 278 0.468226 CTAACCATTCCTGCCCGCTA 59.532 55.000 0.00 0.00 0.00 4.26
278 279 0.179468 TAACCATTCCTGCCCGCTAC 59.821 55.000 0.00 0.00 0.00 3.58
279 280 2.203209 CCATTCCTGCCCGCTACC 60.203 66.667 0.00 0.00 0.00 3.18
280 281 2.203209 CATTCCTGCCCGCTACCC 60.203 66.667 0.00 0.00 0.00 3.69
281 282 3.861797 ATTCCTGCCCGCTACCCG 61.862 66.667 0.00 0.00 0.00 5.28
303 304 3.168528 GGAGGCGCCCAAGGGATA 61.169 66.667 26.15 0.00 37.50 2.59
304 305 2.111251 GAGGCGCCCAAGGGATAC 59.889 66.667 26.15 0.00 37.50 2.24
305 306 3.809374 GAGGCGCCCAAGGGATACG 62.809 68.421 26.15 4.22 37.50 3.06
308 309 4.524318 CGCCCAAGGGATACGCGT 62.524 66.667 19.17 19.17 38.12 6.01
309 310 2.895372 GCCCAAGGGATACGCGTG 60.895 66.667 24.59 2.24 37.50 5.34
310 311 2.895372 CCCAAGGGATACGCGTGC 60.895 66.667 24.59 13.89 37.50 5.34
311 312 3.261951 CCAAGGGATACGCGTGCG 61.262 66.667 24.59 13.39 46.03 5.34
312 313 3.925238 CAAGGGATACGCGTGCGC 61.925 66.667 24.59 20.95 44.19 6.09
324 325 4.307908 GTGCGCCACCGACAACAC 62.308 66.667 4.18 0.00 36.29 3.32
327 328 2.897846 CGCCACCGACAACACCAA 60.898 61.111 0.00 0.00 36.29 3.67
328 329 2.892334 CGCCACCGACAACACCAAG 61.892 63.158 0.00 0.00 36.29 3.61
329 330 1.822186 GCCACCGACAACACCAAGT 60.822 57.895 0.00 0.00 0.00 3.16
330 331 2.021722 CCACCGACAACACCAAGTG 58.978 57.895 0.00 0.00 39.75 3.16
332 333 0.376852 CACCGACAACACCAAGTGTG 59.623 55.000 0.33 0.00 46.79 3.82
333 334 0.250793 ACCGACAACACCAAGTGTGA 59.749 50.000 0.33 0.00 46.79 3.58
334 335 0.655733 CCGACAACACCAAGTGTGAC 59.344 55.000 0.33 0.00 46.79 3.67
335 336 0.655733 CGACAACACCAAGTGTGACC 59.344 55.000 0.33 0.00 46.79 4.02
336 337 1.021968 GACAACACCAAGTGTGACCC 58.978 55.000 0.33 0.00 46.79 4.46
337 338 0.329931 ACAACACCAAGTGTGACCCA 59.670 50.000 0.33 0.00 46.79 4.51
338 339 1.024271 CAACACCAAGTGTGACCCAG 58.976 55.000 0.33 0.00 46.79 4.45
339 340 0.751643 AACACCAAGTGTGACCCAGC 60.752 55.000 0.33 0.00 46.79 4.85
340 341 3.330192 ACCAAGTGTGACCCAGCA 58.670 55.556 0.00 0.00 0.00 4.41
341 342 1.152963 ACCAAGTGTGACCCAGCAC 60.153 57.895 0.00 0.00 39.22 4.40
342 343 1.152984 CCAAGTGTGACCCAGCACA 60.153 57.895 0.00 0.00 45.80 4.57
357 358 0.963962 GCACATATGCCCTTCCATGG 59.036 55.000 4.97 4.97 46.97 3.66
358 359 3.033035 GCACATATGCCCTTCCATGGC 62.033 57.143 6.96 0.00 46.97 4.40
373 374 3.241493 TGGCGACACTGGGTATTTG 57.759 52.632 0.00 0.00 33.40 2.32
374 375 0.398696 TGGCGACACTGGGTATTTGT 59.601 50.000 0.00 0.00 33.40 2.83
375 376 0.802494 GGCGACACTGGGTATTTGTG 59.198 55.000 0.00 0.00 37.67 3.33
376 377 0.168128 GCGACACTGGGTATTTGTGC 59.832 55.000 0.00 0.00 35.33 4.57
377 378 1.518325 CGACACTGGGTATTTGTGCA 58.482 50.000 0.00 0.00 35.33 4.57
378 379 1.464608 CGACACTGGGTATTTGTGCAG 59.535 52.381 0.00 0.00 35.33 4.41
379 380 1.812571 GACACTGGGTATTTGTGCAGG 59.187 52.381 0.00 0.00 35.33 4.85
380 381 1.144913 ACACTGGGTATTTGTGCAGGT 59.855 47.619 0.00 0.00 35.33 4.00
381 382 1.541147 CACTGGGTATTTGTGCAGGTG 59.459 52.381 0.00 0.00 0.00 4.00
382 383 0.527565 CTGGGTATTTGTGCAGGTGC 59.472 55.000 0.00 0.00 42.50 5.01
383 384 0.112218 TGGGTATTTGTGCAGGTGCT 59.888 50.000 3.18 0.00 42.66 4.40
384 385 1.256812 GGGTATTTGTGCAGGTGCTT 58.743 50.000 3.18 0.00 42.66 3.91
385 386 1.067635 GGGTATTTGTGCAGGTGCTTG 60.068 52.381 3.18 0.00 42.66 4.01
386 387 1.669795 GGTATTTGTGCAGGTGCTTGC 60.670 52.381 3.18 0.00 44.33 4.01
393 394 2.358615 CAGGTGCTTGCACGGCTA 60.359 61.111 17.87 0.00 0.00 3.93
394 395 2.358737 AGGTGCTTGCACGGCTAC 60.359 61.111 17.87 5.43 0.00 3.58
395 396 3.431725 GGTGCTTGCACGGCTACC 61.432 66.667 17.87 12.17 0.00 3.18
396 397 2.668212 GTGCTTGCACGGCTACCA 60.668 61.111 10.06 0.00 0.00 3.25
397 398 2.112087 TGCTTGCACGGCTACCAA 59.888 55.556 11.39 0.00 0.00 3.67
398 399 1.965930 TGCTTGCACGGCTACCAAG 60.966 57.895 11.39 0.00 39.08 3.61
399 400 2.690778 GCTTGCACGGCTACCAAGG 61.691 63.158 3.86 0.00 37.14 3.61
400 401 2.671619 TTGCACGGCTACCAAGGC 60.672 61.111 0.00 0.00 44.69 4.35
407 408 2.033602 GCTACCAAGGCAACCCGT 59.966 61.111 0.00 0.00 35.76 5.28
408 409 1.297364 GCTACCAAGGCAACCCGTA 59.703 57.895 0.00 0.00 35.76 4.02
409 410 1.022982 GCTACCAAGGCAACCCGTAC 61.023 60.000 0.00 0.00 35.76 3.67
410 411 0.738412 CTACCAAGGCAACCCGTACG 60.738 60.000 8.69 8.69 35.76 3.67
411 412 1.470996 TACCAAGGCAACCCGTACGT 61.471 55.000 15.21 0.00 35.76 3.57
412 413 1.292860 CCAAGGCAACCCGTACGTA 59.707 57.895 15.21 0.00 35.76 3.57
413 414 1.015607 CCAAGGCAACCCGTACGTAC 61.016 60.000 15.90 15.90 35.76 3.67
414 415 0.319727 CAAGGCAACCCGTACGTACA 60.320 55.000 24.50 0.00 35.76 2.90
415 416 0.037975 AAGGCAACCCGTACGTACAG 60.038 55.000 24.50 17.12 35.76 2.74
416 417 0.895100 AGGCAACCCGTACGTACAGA 60.895 55.000 24.50 0.00 35.76 3.41
417 418 0.038343 GGCAACCCGTACGTACAGAA 60.038 55.000 24.50 0.00 0.00 3.02
418 419 1.404583 GGCAACCCGTACGTACAGAAT 60.405 52.381 24.50 5.95 0.00 2.40
419 420 1.657094 GCAACCCGTACGTACAGAATG 59.343 52.381 24.50 17.38 46.00 2.67
420 421 2.264813 CAACCCGTACGTACAGAATGG 58.735 52.381 24.50 16.31 43.62 3.16
421 422 0.174162 ACCCGTACGTACAGAATGGC 59.826 55.000 24.50 0.00 43.62 4.40
422 423 0.458669 CCCGTACGTACAGAATGGCT 59.541 55.000 24.50 0.00 43.62 4.75
441 442 4.926207 CCAGCCGGTGGTAGTTAC 57.074 61.111 8.56 0.00 42.17 2.50
442 443 1.219935 CCAGCCGGTGGTAGTTACC 59.780 63.158 8.56 1.25 46.62 2.85
443 444 1.219935 CAGCCGGTGGTAGTTACCC 59.780 63.158 1.90 0.00 45.87 3.69
444 445 1.991722 AGCCGGTGGTAGTTACCCC 60.992 63.158 1.90 5.97 45.87 4.95
445 446 3.035173 GCCGGTGGTAGTTACCCCC 62.035 68.421 1.90 3.00 45.87 5.40
446 447 1.613035 CCGGTGGTAGTTACCCCCA 60.613 63.158 9.96 0.00 43.21 4.96
447 448 1.598517 CGGTGGTAGTTACCCCCAC 59.401 63.158 9.96 11.24 43.21 4.61
449 450 3.942351 GTGGTAGTTACCCCCACAC 57.058 57.895 13.87 0.00 46.33 3.82
450 451 1.058284 GTGGTAGTTACCCCCACACA 58.942 55.000 13.87 0.00 46.33 3.72
451 452 1.058284 TGGTAGTTACCCCCACACAC 58.942 55.000 5.90 0.00 45.87 3.82
452 453 1.058284 GGTAGTTACCCCCACACACA 58.942 55.000 0.00 0.00 40.53 3.72
453 454 1.271001 GGTAGTTACCCCCACACACAC 60.271 57.143 0.00 0.00 40.53 3.82
454 455 1.417145 GTAGTTACCCCCACACACACA 59.583 52.381 0.00 0.00 0.00 3.72
455 456 0.472471 AGTTACCCCCACACACACAG 59.528 55.000 0.00 0.00 0.00 3.66
456 457 0.470766 GTTACCCCCACACACACAGA 59.529 55.000 0.00 0.00 0.00 3.41
457 458 1.073284 GTTACCCCCACACACACAGAT 59.927 52.381 0.00 0.00 0.00 2.90
458 459 2.303600 GTTACCCCCACACACACAGATA 59.696 50.000 0.00 0.00 0.00 1.98
855 856 7.849804 ATAATATTCTACAATAGGCAAGCCG 57.150 36.000 5.28 0.00 41.95 5.52
889 890 1.408266 CCGAAAACAGATCCCCCGATT 60.408 52.381 0.00 0.00 0.00 3.34
1023 1025 4.473520 CGCCTCGCCACCATCCTT 62.474 66.667 0.00 0.00 0.00 3.36
1501 1516 3.539593 TTCCTCCAGCCGACCCTCA 62.540 63.158 0.00 0.00 0.00 3.86
1525 1543 3.970410 CCAAGCCCAGGACCAGCA 61.970 66.667 0.00 0.00 0.00 4.41
1616 1634 3.077907 CAAGAAGAAGGGGGCGGA 58.922 61.111 0.00 0.00 0.00 5.54
1725 1750 0.179161 CGGCCAACACAAAAACGTCA 60.179 50.000 2.24 0.00 0.00 4.35
1729 1754 3.489398 GGCCAACACAAAAACGTCATACA 60.489 43.478 0.00 0.00 0.00 2.29
1816 1841 7.847096 TCATAAGCAGTACAAGAACCTCATAA 58.153 34.615 0.00 0.00 0.00 1.90
2110 2176 3.869246 CGTGGTGGTACTATTGAATCACC 59.131 47.826 6.15 6.15 43.39 4.02
2171 2237 7.768807 AAACATTTTATTACCAGGCAGTACA 57.231 32.000 0.00 0.00 0.00 2.90
2222 2301 4.398319 ACATGTCAAGGGGAGTTTAGTTG 58.602 43.478 0.00 0.00 0.00 3.16
2262 2595 6.919721 TGGGCAGTACAATTTATTCACTTTC 58.080 36.000 0.00 0.00 0.00 2.62
2311 2710 0.999406 CGGGCAGTACGAAACTCATG 59.001 55.000 0.00 0.00 35.76 3.07
2344 3278 3.418684 ACAAGGTACATGTGAAGGGAC 57.581 47.619 9.11 0.00 39.47 4.46
2421 4442 5.523438 ACAAAAACTTCTTTATTGCCGGA 57.477 34.783 5.05 0.00 0.00 5.14
2468 5632 6.534793 CAGAAGTACAAGGCAAATTTGTGTTT 59.465 34.615 19.03 8.17 39.03 2.83
2510 5674 8.396272 AGCAGTACAATTTATTCACTTTGAGT 57.604 30.769 0.00 0.00 0.00 3.41
2579 5759 3.418684 ACAAGGTACATGTGAAGGGAC 57.581 47.619 9.11 0.00 39.47 4.46
2830 6256 2.307309 CGCTGCCGAAGACGTTGAA 61.307 57.895 0.00 0.00 37.88 2.69
2834 6260 0.387929 TGCCGAAGACGTTGAAGAGT 59.612 50.000 0.00 0.00 37.88 3.24
2837 6263 2.096860 GCCGAAGACGTTGAAGAGTTTC 60.097 50.000 0.00 0.00 37.88 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.534729 AATTTGTCCAACGAGGGCTC 58.465 50.000 5.01 0.00 44.59 4.70
9 10 1.613437 CAAATTTGTCCAACGAGGGCT 59.387 47.619 10.15 0.00 44.59 5.19
10 11 1.339929 ACAAATTTGTCCAACGAGGGC 59.660 47.619 18.13 0.00 44.53 5.19
19 20 5.089065 ACGTCCCGTTGACAAATTTGTCC 62.089 47.826 36.35 25.27 43.74 4.02
20 21 2.032426 ACGTCCCGTTGACAAATTTGTC 59.968 45.455 34.41 34.41 43.42 3.18
21 22 2.018515 ACGTCCCGTTGACAAATTTGT 58.981 42.857 23.49 23.49 44.71 2.83
22 23 2.380660 CACGTCCCGTTGACAAATTTG 58.619 47.619 16.67 16.67 44.71 2.32
23 24 1.268845 GCACGTCCCGTTGACAAATTT 60.269 47.619 0.00 0.00 44.71 1.82
24 25 0.309612 GCACGTCCCGTTGACAAATT 59.690 50.000 0.00 0.00 44.71 1.82
25 26 0.534203 AGCACGTCCCGTTGACAAAT 60.534 50.000 0.00 0.00 44.71 2.32
26 27 1.153329 AGCACGTCCCGTTGACAAA 60.153 52.632 0.00 0.00 44.71 2.83
27 28 1.593209 GAGCACGTCCCGTTGACAA 60.593 57.895 0.00 0.00 44.71 3.18
28 29 2.028484 GAGCACGTCCCGTTGACA 59.972 61.111 0.00 0.00 44.71 3.58
29 30 3.103911 CGAGCACGTCCCGTTGAC 61.104 66.667 0.00 0.00 38.32 3.18
30 31 4.351938 CCGAGCACGTCCCGTTGA 62.352 66.667 2.18 0.00 38.32 3.18
55 56 3.644606 AGGGTGGACTGGCAGCAG 61.645 66.667 15.89 0.00 0.00 4.24
56 57 3.957586 CAGGGTGGACTGGCAGCA 61.958 66.667 15.89 2.02 34.84 4.41
58 59 3.201707 AAGCAGGGTGGACTGGCAG 62.202 63.158 14.16 14.16 38.90 4.85
59 60 3.177884 AAGCAGGGTGGACTGGCA 61.178 61.111 0.00 0.00 38.90 4.92
60 61 2.360475 GAAGCAGGGTGGACTGGC 60.360 66.667 0.00 0.00 38.90 4.85
61 62 2.352805 GGAAGCAGGGTGGACTGG 59.647 66.667 0.00 0.00 38.90 4.00
62 63 2.046892 CGGAAGCAGGGTGGACTG 60.047 66.667 0.00 0.00 41.41 3.51
74 75 2.202566 GTTTCCGGATTCTAGCGGAAG 58.797 52.381 17.63 0.00 40.86 3.46
75 76 1.551430 TGTTTCCGGATTCTAGCGGAA 59.449 47.619 15.35 15.35 38.54 4.30
76 77 1.187974 TGTTTCCGGATTCTAGCGGA 58.812 50.000 4.15 5.25 0.00 5.54
77 78 2.018542 TTGTTTCCGGATTCTAGCGG 57.981 50.000 4.15 0.49 0.00 5.52
78 79 3.000727 ACTTTGTTTCCGGATTCTAGCG 58.999 45.455 4.15 0.00 0.00 4.26
79 80 4.000988 TCACTTTGTTTCCGGATTCTAGC 58.999 43.478 4.15 0.00 0.00 3.42
80 81 4.392138 GGTCACTTTGTTTCCGGATTCTAG 59.608 45.833 4.15 2.12 0.00 2.43
81 82 4.202377 TGGTCACTTTGTTTCCGGATTCTA 60.202 41.667 4.15 0.00 0.00 2.10
82 83 3.146847 GGTCACTTTGTTTCCGGATTCT 58.853 45.455 4.15 0.00 0.00 2.40
83 84 2.882137 TGGTCACTTTGTTTCCGGATTC 59.118 45.455 4.15 1.67 0.00 2.52
84 85 2.938838 TGGTCACTTTGTTTCCGGATT 58.061 42.857 4.15 0.00 0.00 3.01
85 86 2.649531 TGGTCACTTTGTTTCCGGAT 57.350 45.000 4.15 0.00 0.00 4.18
86 87 2.226330 CATGGTCACTTTGTTTCCGGA 58.774 47.619 0.00 0.00 0.00 5.14
87 88 1.269448 CCATGGTCACTTTGTTTCCGG 59.731 52.381 2.57 0.00 0.00 5.14
88 89 2.226330 TCCATGGTCACTTTGTTTCCG 58.774 47.619 12.58 0.00 0.00 4.30
89 90 3.486383 TCTCCATGGTCACTTTGTTTCC 58.514 45.455 12.58 0.00 0.00 3.13
90 91 4.761739 TCATCTCCATGGTCACTTTGTTTC 59.238 41.667 12.58 0.00 0.00 2.78
91 92 4.728772 TCATCTCCATGGTCACTTTGTTT 58.271 39.130 12.58 0.00 0.00 2.83
92 93 4.371624 TCATCTCCATGGTCACTTTGTT 57.628 40.909 12.58 0.00 0.00 2.83
93 94 4.074970 GTTCATCTCCATGGTCACTTTGT 58.925 43.478 12.58 0.00 0.00 2.83
94 95 4.330250 AGTTCATCTCCATGGTCACTTTG 58.670 43.478 12.58 2.90 0.00 2.77
95 96 4.647564 AGTTCATCTCCATGGTCACTTT 57.352 40.909 12.58 0.00 0.00 2.66
96 97 4.780021 AGTAGTTCATCTCCATGGTCACTT 59.220 41.667 12.58 0.00 0.00 3.16
97 98 4.357325 AGTAGTTCATCTCCATGGTCACT 58.643 43.478 12.58 8.28 0.00 3.41
98 99 4.744795 AGTAGTTCATCTCCATGGTCAC 57.255 45.455 12.58 0.96 0.00 3.67
99 100 6.040955 GTCATAGTAGTTCATCTCCATGGTCA 59.959 42.308 12.58 0.00 0.00 4.02
100 101 6.451393 GTCATAGTAGTTCATCTCCATGGTC 58.549 44.000 12.58 0.00 0.00 4.02
101 102 5.305644 GGTCATAGTAGTTCATCTCCATGGT 59.694 44.000 12.58 0.00 0.00 3.55
102 103 5.305386 TGGTCATAGTAGTTCATCTCCATGG 59.695 44.000 4.97 4.97 0.00 3.66
103 104 6.219473 GTGGTCATAGTAGTTCATCTCCATG 58.781 44.000 0.00 0.00 0.00 3.66
104 105 5.010112 CGTGGTCATAGTAGTTCATCTCCAT 59.990 44.000 0.00 0.00 0.00 3.41
105 106 4.338400 CGTGGTCATAGTAGTTCATCTCCA 59.662 45.833 0.00 0.00 0.00 3.86
106 107 4.579340 TCGTGGTCATAGTAGTTCATCTCC 59.421 45.833 0.00 0.00 0.00 3.71
107 108 5.297278 AGTCGTGGTCATAGTAGTTCATCTC 59.703 44.000 0.00 0.00 0.00 2.75
108 109 5.066634 CAGTCGTGGTCATAGTAGTTCATCT 59.933 44.000 0.00 0.00 0.00 2.90
109 110 5.274718 CAGTCGTGGTCATAGTAGTTCATC 58.725 45.833 0.00 0.00 0.00 2.92
110 111 4.440250 GCAGTCGTGGTCATAGTAGTTCAT 60.440 45.833 0.00 0.00 0.00 2.57
111 112 3.119602 GCAGTCGTGGTCATAGTAGTTCA 60.120 47.826 0.00 0.00 0.00 3.18
112 113 3.119602 TGCAGTCGTGGTCATAGTAGTTC 60.120 47.826 0.00 0.00 0.00 3.01
113 114 2.823747 TGCAGTCGTGGTCATAGTAGTT 59.176 45.455 0.00 0.00 0.00 2.24
114 115 2.443416 TGCAGTCGTGGTCATAGTAGT 58.557 47.619 0.00 0.00 0.00 2.73
115 116 3.316588 AGATGCAGTCGTGGTCATAGTAG 59.683 47.826 0.00 0.00 0.00 2.57
116 117 3.288092 AGATGCAGTCGTGGTCATAGTA 58.712 45.455 0.00 0.00 0.00 1.82
117 118 2.103373 AGATGCAGTCGTGGTCATAGT 58.897 47.619 0.00 0.00 0.00 2.12
118 119 2.879002 AGATGCAGTCGTGGTCATAG 57.121 50.000 0.00 0.00 0.00 2.23
119 120 2.032924 CGTAGATGCAGTCGTGGTCATA 59.967 50.000 0.00 0.00 0.00 2.15
120 121 1.202302 CGTAGATGCAGTCGTGGTCAT 60.202 52.381 0.00 0.00 0.00 3.06
121 122 0.170339 CGTAGATGCAGTCGTGGTCA 59.830 55.000 0.00 0.00 0.00 4.02
122 123 1.140407 GCGTAGATGCAGTCGTGGTC 61.140 60.000 0.00 0.00 34.15 4.02
123 124 1.153823 GCGTAGATGCAGTCGTGGT 60.154 57.895 0.00 0.00 34.15 4.16
124 125 1.878522 GGCGTAGATGCAGTCGTGG 60.879 63.158 0.00 0.00 36.28 4.94
125 126 0.528466 ATGGCGTAGATGCAGTCGTG 60.528 55.000 0.00 0.00 36.28 4.35
126 127 0.528466 CATGGCGTAGATGCAGTCGT 60.528 55.000 0.00 0.00 36.28 4.34
127 128 0.528466 ACATGGCGTAGATGCAGTCG 60.528 55.000 0.00 0.00 36.28 4.18
128 129 1.594862 GAACATGGCGTAGATGCAGTC 59.405 52.381 0.00 0.00 36.28 3.51
129 130 1.656652 GAACATGGCGTAGATGCAGT 58.343 50.000 0.00 0.00 36.28 4.40
130 131 0.578683 CGAACATGGCGTAGATGCAG 59.421 55.000 0.00 0.00 36.28 4.41
131 132 0.108377 ACGAACATGGCGTAGATGCA 60.108 50.000 13.20 0.00 40.65 3.96
132 133 0.301687 CACGAACATGGCGTAGATGC 59.698 55.000 14.20 0.00 40.44 3.91
133 134 0.930310 CCACGAACATGGCGTAGATG 59.070 55.000 14.20 4.19 40.44 2.90
134 135 0.821517 TCCACGAACATGGCGTAGAT 59.178 50.000 14.20 0.00 40.44 1.98
135 136 0.108992 GTCCACGAACATGGCGTAGA 60.109 55.000 14.20 10.60 40.44 2.59
136 137 0.389296 TGTCCACGAACATGGCGTAG 60.389 55.000 14.20 8.61 40.44 3.51
137 138 0.033642 TTGTCCACGAACATGGCGTA 59.966 50.000 14.20 0.00 40.44 4.42
138 139 1.227704 TTGTCCACGAACATGGCGT 60.228 52.632 9.66 9.66 43.67 5.68
139 140 1.227999 ACTTGTCCACGAACATGGCG 61.228 55.000 8.44 8.44 39.85 5.69
140 141 0.517316 GACTTGTCCACGAACATGGC 59.483 55.000 0.00 0.00 39.85 4.40
141 142 1.877637 TGACTTGTCCACGAACATGG 58.122 50.000 0.00 0.00 41.57 3.66
142 143 2.160219 CCATGACTTGTCCACGAACATG 59.840 50.000 0.00 0.00 35.11 3.21
143 144 2.224523 ACCATGACTTGTCCACGAACAT 60.225 45.455 0.00 0.00 0.00 2.71
144 145 1.140052 ACCATGACTTGTCCACGAACA 59.860 47.619 0.00 0.00 0.00 3.18
145 146 1.878953 ACCATGACTTGTCCACGAAC 58.121 50.000 0.00 0.00 0.00 3.95
146 147 2.365941 TGTACCATGACTTGTCCACGAA 59.634 45.455 0.00 0.00 0.00 3.85
147 148 1.964933 TGTACCATGACTTGTCCACGA 59.035 47.619 0.00 0.00 0.00 4.35
148 149 2.337583 CTGTACCATGACTTGTCCACG 58.662 52.381 0.00 0.00 0.00 4.94
149 150 2.076863 GCTGTACCATGACTTGTCCAC 58.923 52.381 0.00 0.00 0.00 4.02
150 151 1.977854 AGCTGTACCATGACTTGTCCA 59.022 47.619 0.00 0.00 0.00 4.02
151 152 2.770164 AGCTGTACCATGACTTGTCC 57.230 50.000 0.00 0.00 0.00 4.02
152 153 3.433615 GTGAAGCTGTACCATGACTTGTC 59.566 47.826 0.00 0.00 0.00 3.18
153 154 3.181455 TGTGAAGCTGTACCATGACTTGT 60.181 43.478 0.00 0.00 0.00 3.16
154 155 3.187227 GTGTGAAGCTGTACCATGACTTG 59.813 47.826 0.00 0.00 0.00 3.16
155 156 3.071602 AGTGTGAAGCTGTACCATGACTT 59.928 43.478 0.00 0.00 0.00 3.01
156 157 2.634940 AGTGTGAAGCTGTACCATGACT 59.365 45.455 0.00 0.00 0.00 3.41
157 158 2.738846 CAGTGTGAAGCTGTACCATGAC 59.261 50.000 0.00 0.00 0.00 3.06
158 159 2.871637 GCAGTGTGAAGCTGTACCATGA 60.872 50.000 0.00 0.00 36.42 3.07
159 160 1.466167 GCAGTGTGAAGCTGTACCATG 59.534 52.381 0.00 0.00 36.42 3.66
160 161 1.072173 TGCAGTGTGAAGCTGTACCAT 59.928 47.619 0.00 0.00 36.42 3.55
161 162 0.467804 TGCAGTGTGAAGCTGTACCA 59.532 50.000 0.00 0.00 36.42 3.25
162 163 1.151668 CTGCAGTGTGAAGCTGTACC 58.848 55.000 5.25 0.00 36.42 3.34
163 164 1.151668 CCTGCAGTGTGAAGCTGTAC 58.848 55.000 13.81 0.00 36.42 2.90
164 165 1.001293 CTCCTGCAGTGTGAAGCTGTA 59.999 52.381 13.81 0.00 36.42 2.74
165 166 0.250209 CTCCTGCAGTGTGAAGCTGT 60.250 55.000 13.81 0.00 36.42 4.40
166 167 1.575576 GCTCCTGCAGTGTGAAGCTG 61.576 60.000 13.81 0.00 39.41 4.24
167 168 1.302351 GCTCCTGCAGTGTGAAGCT 60.302 57.895 13.81 0.00 39.41 3.74
168 169 1.297456 GAGCTCCTGCAGTGTGAAGC 61.297 60.000 13.81 12.63 42.74 3.86
169 170 1.013005 CGAGCTCCTGCAGTGTGAAG 61.013 60.000 13.81 3.18 42.74 3.02
170 171 1.005748 CGAGCTCCTGCAGTGTGAA 60.006 57.895 13.81 0.00 42.74 3.18
171 172 1.253593 ATCGAGCTCCTGCAGTGTGA 61.254 55.000 13.81 1.69 42.74 3.58
172 173 1.082679 CATCGAGCTCCTGCAGTGTG 61.083 60.000 13.81 6.44 42.74 3.82
173 174 1.217511 CATCGAGCTCCTGCAGTGT 59.782 57.895 13.81 0.00 42.74 3.55
174 175 1.521010 CCATCGAGCTCCTGCAGTG 60.521 63.158 13.81 6.28 42.74 3.66
175 176 2.898738 CCATCGAGCTCCTGCAGT 59.101 61.111 13.81 0.00 42.74 4.40
176 177 2.588314 GCCATCGAGCTCCTGCAG 60.588 66.667 6.78 6.78 42.74 4.41
177 178 4.519437 CGCCATCGAGCTCCTGCA 62.519 66.667 8.47 0.00 42.74 4.41
178 179 4.212913 TCGCCATCGAGCTCCTGC 62.213 66.667 8.47 4.79 40.21 4.85
187 188 0.657840 GGAGGAAAACATCGCCATCG 59.342 55.000 0.00 0.00 0.00 3.84
188 189 0.657840 CGGAGGAAAACATCGCCATC 59.342 55.000 0.00 0.00 0.00 3.51
189 190 1.376609 GCGGAGGAAAACATCGCCAT 61.377 55.000 0.00 0.00 40.44 4.40
190 191 2.038269 GCGGAGGAAAACATCGCCA 61.038 57.895 0.00 0.00 40.44 5.69
191 192 1.982073 CTGCGGAGGAAAACATCGCC 61.982 60.000 0.00 0.00 44.91 5.54
192 193 1.425428 CTGCGGAGGAAAACATCGC 59.575 57.895 0.00 0.00 45.60 4.58
193 194 0.391130 TCCTGCGGAGGAAAACATCG 60.391 55.000 24.91 0.00 46.19 3.84
194 195 3.551259 TCCTGCGGAGGAAAACATC 57.449 52.632 24.91 0.00 46.19 3.06
202 203 0.394192 TAGCATCATTCCTGCGGAGG 59.606 55.000 18.34 18.34 44.38 4.30
203 204 1.342496 TCTAGCATCATTCCTGCGGAG 59.658 52.381 0.00 0.00 44.38 4.63
204 205 1.342496 CTCTAGCATCATTCCTGCGGA 59.658 52.381 0.00 0.00 44.38 5.54
205 206 1.607509 CCTCTAGCATCATTCCTGCGG 60.608 57.143 0.00 0.00 44.38 5.69
206 207 1.607509 CCCTCTAGCATCATTCCTGCG 60.608 57.143 0.00 0.00 44.38 5.18
207 208 1.271271 CCCCTCTAGCATCATTCCTGC 60.271 57.143 0.00 0.00 39.97 4.85
208 209 2.053244 ACCCCTCTAGCATCATTCCTG 58.947 52.381 0.00 0.00 0.00 3.86
209 210 2.053244 CACCCCTCTAGCATCATTCCT 58.947 52.381 0.00 0.00 0.00 3.36
210 211 1.072965 CCACCCCTCTAGCATCATTCC 59.927 57.143 0.00 0.00 0.00 3.01
211 212 1.544314 GCCACCCCTCTAGCATCATTC 60.544 57.143 0.00 0.00 0.00 2.67
212 213 0.475906 GCCACCCCTCTAGCATCATT 59.524 55.000 0.00 0.00 0.00 2.57
213 214 1.422161 GGCCACCCCTCTAGCATCAT 61.422 60.000 0.00 0.00 0.00 2.45
214 215 2.072487 GGCCACCCCTCTAGCATCA 61.072 63.158 0.00 0.00 0.00 3.07
215 216 2.832498 GGCCACCCCTCTAGCATC 59.168 66.667 0.00 0.00 0.00 3.91
216 217 3.164269 CGGCCACCCCTCTAGCAT 61.164 66.667 2.24 0.00 0.00 3.79
217 218 4.715130 ACGGCCACCCCTCTAGCA 62.715 66.667 2.24 0.00 0.00 3.49
218 219 3.400054 AACGGCCACCCCTCTAGC 61.400 66.667 2.24 0.00 0.00 3.42
219 220 2.291043 ACAACGGCCACCCCTCTAG 61.291 63.158 2.24 0.00 0.00 2.43
220 221 2.203877 ACAACGGCCACCCCTCTA 60.204 61.111 2.24 0.00 0.00 2.43
221 222 3.953775 CACAACGGCCACCCCTCT 61.954 66.667 2.24 0.00 0.00 3.69
226 227 4.572571 TCCACCACAACGGCCACC 62.573 66.667 2.24 0.00 39.03 4.61
227 228 3.284449 GTCCACCACAACGGCCAC 61.284 66.667 2.24 0.00 39.03 5.01
228 229 2.951475 GAAGTCCACCACAACGGCCA 62.951 60.000 2.24 0.00 39.03 5.36
229 230 2.203294 AAGTCCACCACAACGGCC 60.203 61.111 0.00 0.00 39.03 6.13
230 231 2.604174 CGAAGTCCACCACAACGGC 61.604 63.158 0.00 0.00 39.03 5.68
231 232 1.227438 ACGAAGTCCACCACAACGG 60.227 57.895 0.00 0.00 29.74 4.44
232 233 4.431035 ACGAAGTCCACCACAACG 57.569 55.556 0.00 0.00 29.74 4.10
244 245 0.458025 GGTTAGCCTGGACGACGAAG 60.458 60.000 0.00 0.00 0.00 3.79
245 246 1.180456 TGGTTAGCCTGGACGACGAA 61.180 55.000 0.00 0.00 35.27 3.85
246 247 0.968901 ATGGTTAGCCTGGACGACGA 60.969 55.000 0.00 0.00 35.27 4.20
247 248 0.108329 AATGGTTAGCCTGGACGACG 60.108 55.000 0.00 0.00 35.27 5.12
248 249 1.653151 GAATGGTTAGCCTGGACGAC 58.347 55.000 0.00 0.00 35.27 4.34
249 250 0.539986 GGAATGGTTAGCCTGGACGA 59.460 55.000 0.00 0.00 35.27 4.20
250 251 0.541863 AGGAATGGTTAGCCTGGACG 59.458 55.000 0.00 0.00 35.27 4.79
251 252 2.044123 CAGGAATGGTTAGCCTGGAC 57.956 55.000 0.00 0.00 44.24 4.02
255 256 1.615262 GGGCAGGAATGGTTAGCCT 59.385 57.895 0.00 0.00 44.60 4.58
256 257 1.823899 CGGGCAGGAATGGTTAGCC 60.824 63.158 0.00 0.00 44.48 3.93
257 258 2.481471 GCGGGCAGGAATGGTTAGC 61.481 63.158 0.00 0.00 0.00 3.09
258 259 0.468226 TAGCGGGCAGGAATGGTTAG 59.532 55.000 0.00 0.00 0.00 2.34
259 260 0.179468 GTAGCGGGCAGGAATGGTTA 59.821 55.000 0.00 0.00 0.00 2.85
260 261 1.077716 GTAGCGGGCAGGAATGGTT 60.078 57.895 0.00 0.00 0.00 3.67
261 262 2.590092 GTAGCGGGCAGGAATGGT 59.410 61.111 0.00 0.00 0.00 3.55
262 263 2.203209 GGTAGCGGGCAGGAATGG 60.203 66.667 0.00 0.00 0.00 3.16
263 264 2.203209 GGGTAGCGGGCAGGAATG 60.203 66.667 0.00 0.00 0.00 2.67
264 265 3.861797 CGGGTAGCGGGCAGGAAT 61.862 66.667 0.00 0.00 0.00 3.01
285 286 3.714078 TATCCCTTGGGCGCCTCCT 62.714 63.158 28.56 6.90 34.39 3.69
286 287 3.168528 TATCCCTTGGGCGCCTCC 61.169 66.667 28.56 11.61 0.00 4.30
287 288 2.111251 GTATCCCTTGGGCGCCTC 59.889 66.667 28.56 17.27 0.00 4.70
288 289 3.861797 CGTATCCCTTGGGCGCCT 61.862 66.667 28.56 6.90 0.00 5.52
292 293 2.895372 CACGCGTATCCCTTGGGC 60.895 66.667 13.44 0.00 0.00 5.36
293 294 2.895372 GCACGCGTATCCCTTGGG 60.895 66.667 13.44 0.00 0.00 4.12
294 295 3.261951 CGCACGCGTATCCCTTGG 61.262 66.667 13.44 0.00 34.35 3.61
295 296 3.925238 GCGCACGCGTATCCCTTG 61.925 66.667 13.44 0.00 42.09 3.61
307 308 4.307908 GTGTTGTCGGTGGCGCAC 62.308 66.667 10.83 5.50 0.00 5.34
310 311 2.892334 CTTGGTGTTGTCGGTGGCG 61.892 63.158 0.00 0.00 0.00 5.69
311 312 1.822186 ACTTGGTGTTGTCGGTGGC 60.822 57.895 0.00 0.00 0.00 5.01
312 313 0.746563 ACACTTGGTGTTGTCGGTGG 60.747 55.000 0.00 0.00 45.08 4.61
313 314 0.376852 CACACTTGGTGTTGTCGGTG 59.623 55.000 0.19 0.00 45.08 4.94
314 315 0.250793 TCACACTTGGTGTTGTCGGT 59.749 50.000 0.19 0.00 45.08 4.69
315 316 0.655733 GTCACACTTGGTGTTGTCGG 59.344 55.000 0.19 0.00 45.08 4.79
316 317 0.655733 GGTCACACTTGGTGTTGTCG 59.344 55.000 0.19 0.00 45.08 4.35
317 318 1.021968 GGGTCACACTTGGTGTTGTC 58.978 55.000 0.19 0.00 45.08 3.18
318 319 0.329931 TGGGTCACACTTGGTGTTGT 59.670 50.000 0.19 0.00 45.08 3.32
319 320 1.024271 CTGGGTCACACTTGGTGTTG 58.976 55.000 0.19 0.00 45.08 3.33
320 321 0.751643 GCTGGGTCACACTTGGTGTT 60.752 55.000 0.19 0.00 45.08 3.32
323 324 1.152963 GTGCTGGGTCACACTTGGT 60.153 57.895 0.00 0.00 36.97 3.67
324 325 1.152984 TGTGCTGGGTCACACTTGG 60.153 57.895 0.00 0.00 41.57 3.61
325 326 4.557554 TGTGCTGGGTCACACTTG 57.442 55.556 0.00 0.00 41.57 3.16
347 348 1.746615 CAGTGTCGCCATGGAAGGG 60.747 63.158 18.40 0.57 43.76 3.95
348 349 1.746615 CCAGTGTCGCCATGGAAGG 60.747 63.158 18.40 3.45 36.09 3.46
349 350 1.746615 CCCAGTGTCGCCATGGAAG 60.747 63.158 18.40 8.79 36.09 3.46
350 351 1.195442 TACCCAGTGTCGCCATGGAA 61.195 55.000 18.40 0.00 36.09 3.53
351 352 0.980754 ATACCCAGTGTCGCCATGGA 60.981 55.000 18.40 0.00 36.09 3.41
352 353 0.107214 AATACCCAGTGTCGCCATGG 60.107 55.000 7.63 7.63 0.00 3.66
353 354 1.401552 CAAATACCCAGTGTCGCCATG 59.598 52.381 0.00 0.00 0.00 3.66
354 355 1.004277 ACAAATACCCAGTGTCGCCAT 59.996 47.619 0.00 0.00 0.00 4.40
355 356 0.398696 ACAAATACCCAGTGTCGCCA 59.601 50.000 0.00 0.00 0.00 5.69
356 357 0.802494 CACAAATACCCAGTGTCGCC 59.198 55.000 0.00 0.00 0.00 5.54
357 358 0.168128 GCACAAATACCCAGTGTCGC 59.832 55.000 0.00 0.00 35.75 5.19
358 359 1.464608 CTGCACAAATACCCAGTGTCG 59.535 52.381 0.00 0.00 35.75 4.35
359 360 1.812571 CCTGCACAAATACCCAGTGTC 59.187 52.381 0.00 0.00 35.75 3.67
360 361 1.144913 ACCTGCACAAATACCCAGTGT 59.855 47.619 0.00 0.00 35.75 3.55
361 362 1.541147 CACCTGCACAAATACCCAGTG 59.459 52.381 0.00 0.00 36.39 3.66
362 363 1.909700 CACCTGCACAAATACCCAGT 58.090 50.000 0.00 0.00 0.00 4.00
363 364 0.527565 GCACCTGCACAAATACCCAG 59.472 55.000 0.00 0.00 41.59 4.45
364 365 0.112218 AGCACCTGCACAAATACCCA 59.888 50.000 0.00 0.00 45.16 4.51
365 366 1.067635 CAAGCACCTGCACAAATACCC 60.068 52.381 0.00 0.00 45.16 3.69
366 367 1.669795 GCAAGCACCTGCACAAATACC 60.670 52.381 0.00 0.00 45.16 2.73
367 368 1.701704 GCAAGCACCTGCACAAATAC 58.298 50.000 0.00 0.00 45.16 1.89
376 377 2.358615 TAGCCGTGCAAGCACCTG 60.359 61.111 18.54 11.47 43.49 4.00
377 378 2.358737 GTAGCCGTGCAAGCACCT 60.359 61.111 18.54 13.12 43.49 4.00
378 379 3.431725 GGTAGCCGTGCAAGCACC 61.432 66.667 18.54 12.37 43.49 5.01
379 380 2.187599 CTTGGTAGCCGTGCAAGCAC 62.188 60.000 14.90 14.90 43.01 4.40
380 381 1.965930 CTTGGTAGCCGTGCAAGCA 60.966 57.895 12.15 0.00 0.00 3.91
381 382 2.690778 CCTTGGTAGCCGTGCAAGC 61.691 63.158 1.71 1.71 0.00 4.01
382 383 2.690778 GCCTTGGTAGCCGTGCAAG 61.691 63.158 0.00 0.00 0.00 4.01
383 384 2.671619 GCCTTGGTAGCCGTGCAA 60.672 61.111 0.00 0.00 0.00 4.08
384 385 3.483788 TTGCCTTGGTAGCCGTGCA 62.484 57.895 0.00 0.00 0.00 4.57
385 386 2.671619 TTGCCTTGGTAGCCGTGC 60.672 61.111 0.00 0.00 0.00 5.34
386 387 2.332654 GGTTGCCTTGGTAGCCGTG 61.333 63.158 0.00 0.00 0.00 4.94
387 388 2.033602 GGTTGCCTTGGTAGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
388 389 2.750237 GGGTTGCCTTGGTAGCCG 60.750 66.667 4.78 0.00 0.00 5.52
389 390 2.187896 TACGGGTTGCCTTGGTAGCC 62.188 60.000 2.26 2.26 0.00 3.93
390 391 1.022982 GTACGGGTTGCCTTGGTAGC 61.023 60.000 0.00 0.00 0.00 3.58
391 392 0.738412 CGTACGGGTTGCCTTGGTAG 60.738 60.000 7.57 0.00 0.00 3.18
392 393 1.292860 CGTACGGGTTGCCTTGGTA 59.707 57.895 7.57 0.00 0.00 3.25
393 394 1.470996 TACGTACGGGTTGCCTTGGT 61.471 55.000 21.06 0.00 0.00 3.67
394 395 1.015607 GTACGTACGGGTTGCCTTGG 61.016 60.000 21.06 0.00 0.00 3.61
395 396 0.319727 TGTACGTACGGGTTGCCTTG 60.320 55.000 21.06 0.00 0.00 3.61
396 397 0.037975 CTGTACGTACGGGTTGCCTT 60.038 55.000 24.19 0.00 0.00 4.35
397 398 0.895100 TCTGTACGTACGGGTTGCCT 60.895 55.000 29.41 0.00 33.41 4.75
398 399 0.038343 TTCTGTACGTACGGGTTGCC 60.038 55.000 29.41 1.85 33.41 4.52
399 400 1.657094 CATTCTGTACGTACGGGTTGC 59.343 52.381 29.41 2.70 33.41 4.17
400 401 2.264813 CCATTCTGTACGTACGGGTTG 58.735 52.381 29.41 24.74 33.41 3.77
401 402 1.404583 GCCATTCTGTACGTACGGGTT 60.405 52.381 29.41 16.88 33.41 4.11
402 403 0.174162 GCCATTCTGTACGTACGGGT 59.826 55.000 29.41 18.06 33.41 5.28
403 404 0.458669 AGCCATTCTGTACGTACGGG 59.541 55.000 29.41 19.89 33.41 5.28
404 405 1.556564 CAGCCATTCTGTACGTACGG 58.443 55.000 25.60 25.60 38.02 4.02
405 406 0.921347 GCAGCCATTCTGTACGTACG 59.079 55.000 20.18 15.01 44.66 3.67
406 407 1.287425 GGCAGCCATTCTGTACGTAC 58.713 55.000 18.90 18.90 44.66 3.67
407 408 0.899019 TGGCAGCCATTCTGTACGTA 59.101 50.000 11.22 0.00 44.66 3.57
408 409 0.391661 CTGGCAGCCATTCTGTACGT 60.392 55.000 16.64 0.00 44.66 3.57
409 410 1.709147 GCTGGCAGCCATTCTGTACG 61.709 60.000 28.87 0.98 44.66 3.67
410 411 2.101700 GCTGGCAGCCATTCTGTAC 58.898 57.895 28.87 0.00 44.66 2.90
411 412 4.643795 GCTGGCAGCCATTCTGTA 57.356 55.556 28.87 0.00 44.66 2.74
421 422 1.895020 TAACTACCACCGGCTGGCAG 61.895 60.000 12.89 18.12 45.32 4.85
422 423 1.914263 TAACTACCACCGGCTGGCA 60.914 57.895 12.89 8.88 45.32 4.92
423 424 1.449070 GTAACTACCACCGGCTGGC 60.449 63.158 12.89 0.00 45.32 4.85
424 425 1.219935 GGTAACTACCACCGGCTGG 59.780 63.158 11.02 11.02 45.73 4.85
425 426 4.926207 GGTAACTACCACCGGCTG 57.074 61.111 0.00 0.00 45.73 4.85
433 434 1.058284 TGTGTGTGGGGGTAACTACC 58.942 55.000 0.00 0.00 45.71 3.18
434 435 1.417145 TGTGTGTGTGGGGGTAACTAC 59.583 52.381 0.00 0.00 0.00 2.73
435 436 1.695242 CTGTGTGTGTGGGGGTAACTA 59.305 52.381 0.00 0.00 0.00 2.24
436 437 0.472471 CTGTGTGTGTGGGGGTAACT 59.528 55.000 0.00 0.00 0.00 2.24
437 438 0.470766 TCTGTGTGTGTGGGGGTAAC 59.529 55.000 0.00 0.00 0.00 2.50
438 439 1.440618 ATCTGTGTGTGTGGGGGTAA 58.559 50.000 0.00 0.00 0.00 2.85
439 440 2.328992 TATCTGTGTGTGTGGGGGTA 57.671 50.000 0.00 0.00 0.00 3.69
440 441 3.173852 TATCTGTGTGTGTGGGGGT 57.826 52.632 0.00 0.00 0.00 4.95
855 856 6.698380 TCTGTTTTCGGGATCCTTATATAGC 58.302 40.000 12.58 0.00 0.00 2.97
1023 1025 3.766691 GCGTGGTCCCCGAAGCTA 61.767 66.667 0.00 0.00 0.00 3.32
1225 1233 2.364780 GGTGGAAGACCGGGTAGGG 61.365 68.421 6.32 0.00 46.96 3.53
1501 1516 4.305956 CCTGGGCTTGGGCTTGGT 62.306 66.667 0.00 0.00 38.73 3.67
1525 1543 3.585990 GGCAGCGGCGCATAATGT 61.586 61.111 35.02 9.30 42.47 2.71
1655 1673 0.036010 GGGCTTGCTGTAGAAGAGCA 60.036 55.000 0.00 0.00 44.75 4.26
1785 1810 8.100791 AGGTTCTTGTACTGCTTATGATTTACA 58.899 33.333 0.00 0.00 0.00 2.41
1950 1979 7.696992 ATTTAATCGCTTCTTTTAACCCTCA 57.303 32.000 0.00 0.00 0.00 3.86
2222 2301 6.220726 ACTGCCCATAAATTATTTCCACAC 57.779 37.500 0.00 0.00 0.00 3.82
2311 2710 2.538512 ACCTTGTACTTCCGTGGAAC 57.461 50.000 0.00 0.00 0.00 3.62
2344 3278 8.457261 CCATAATTTCTTCCAGAGAACTCAAAG 58.543 37.037 4.64 5.31 43.90 2.77
2484 5648 9.502091 ACTCAAAGTGAATAAATTGTACTGCTA 57.498 29.630 0.00 0.00 0.00 3.49
2546 5716 1.416243 ACCTTGTACTTCCGTGGACA 58.584 50.000 0.00 0.00 0.00 4.02
2579 5759 8.457261 CCATAATTTCTTCCAGAGAACTCAAAG 58.543 37.037 4.64 5.31 43.90 2.77
2764 6190 1.294780 CTCCTGCTCGGCACTTTCT 59.705 57.895 0.00 0.00 33.79 2.52
2830 6256 0.892063 GAGCTCCGGACAGAAACTCT 59.108 55.000 0.00 0.00 0.00 3.24
2834 6260 2.261671 GCGAGCTCCGGACAGAAA 59.738 61.111 8.47 0.00 39.04 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.