Multiple sequence alignment - TraesCS7B01G496900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G496900 chr7B 100.000 2141 0 0 1 2141 747613409 747615549 0.000000e+00 3954.0
1 TraesCS7B01G496900 chr7B 100.000 625 0 0 2468 3092 747615876 747616500 0.000000e+00 1155.0
2 TraesCS7B01G496900 chr7B 96.996 566 14 3 1 565 639687352 639687915 0.000000e+00 948.0
3 TraesCS7B01G496900 chr7B 86.875 480 59 4 2468 2945 645908871 645909348 4.540000e-148 534.0
4 TraesCS7B01G496900 chr7B 96.218 238 7 2 567 803 680688427 680688663 3.740000e-104 388.0
5 TraesCS7B01G496900 chr7B 95.798 238 9 1 567 803 746487085 746487322 1.740000e-102 383.0
6 TraesCS7B01G496900 chr7B 95.946 222 8 1 1 222 680687174 680687394 2.930000e-95 359.0
7 TraesCS7B01G496900 chr6A 89.865 1332 79 17 807 2117 596777380 596776084 0.000000e+00 1661.0
8 TraesCS7B01G496900 chr6A 95.853 627 22 3 2470 3092 596775604 596774978 0.000000e+00 1011.0
9 TraesCS7B01G496900 chr6B 89.378 1318 90 10 815 2116 685208578 685207295 0.000000e+00 1613.0
10 TraesCS7B01G496900 chr6B 96.486 626 18 3 2471 3092 685206636 685206011 0.000000e+00 1031.0
11 TraesCS7B01G496900 chr6B 96.087 230 9 0 574 803 506863067 506862838 2.910000e-100 375.0
12 TraesCS7B01G496900 chr6B 95.708 233 9 1 572 803 623380955 623381187 1.050000e-99 374.0
13 TraesCS7B01G496900 chr6B 95.495 222 8 2 1 222 76011350 76011569 1.360000e-93 353.0
14 TraesCS7B01G496900 chr6B 91.176 136 3 5 801 936 550049606 550049732 3.170000e-40 176.0
15 TraesCS7B01G496900 chr2A 98.084 574 9 2 1 573 59843273 59843845 0.000000e+00 998.0
16 TraesCS7B01G496900 chrUn 97.213 574 14 2 1 573 1973686 1973114 0.000000e+00 970.0
17 TraesCS7B01G496900 chrUn 94.425 574 17 3 1 573 220216163 220216722 0.000000e+00 869.0
18 TraesCS7B01G496900 chrUn 78.233 1075 177 37 1018 2059 287633337 287634387 1.210000e-178 636.0
19 TraesCS7B01G496900 chrUn 78.233 1075 177 37 1018 2059 292972677 292971627 1.210000e-178 636.0
20 TraesCS7B01G496900 chrUn 77.623 934 152 37 1159 2059 338767959 338767050 5.910000e-142 514.0
21 TraesCS7B01G496900 chr5B 95.645 574 24 1 1 573 523827989 523828562 0.000000e+00 920.0
22 TraesCS7B01G496900 chr7D 94.707 529 21 6 49 573 630664885 630664360 0.000000e+00 815.0
23 TraesCS7B01G496900 chr7D 87.594 266 31 2 2682 2945 64241315 64241580 1.080000e-79 307.0
24 TraesCS7B01G496900 chr7D 95.000 40 2 0 897 936 220961441 220961480 2.570000e-06 63.9
25 TraesCS7B01G496900 chr3D 78.366 1077 178 33 1018 2059 569119514 569118458 0.000000e+00 647.0
26 TraesCS7B01G496900 chr3D 84.918 610 72 12 2484 3092 568112292 568112882 1.590000e-167 599.0
27 TraesCS7B01G496900 chr3D 82.137 627 72 22 2471 3092 567689605 567689014 4.600000e-138 501.0
28 TraesCS7B01G496900 chr3D 74.747 1188 204 56 999 2112 567691111 567689946 7.870000e-121 444.0
29 TraesCS7B01G496900 chr3D 86.802 394 47 4 2700 3092 567487231 567487620 4.740000e-118 435.0
30 TraesCS7B01G496900 chr3D 75.210 476 92 19 1018 1470 568100631 568101103 5.230000e-48 202.0
31 TraesCS7B01G496900 chr3D 84.390 205 22 6 2468 2672 567487038 567487232 3.150000e-45 193.0
32 TraesCS7B01G496900 chr3D 79.375 160 31 2 1310 1468 564341266 564341108 9.060000e-21 111.0
33 TraesCS7B01G496900 chr3A 77.778 1080 179 36 1019 2059 701643461 701644518 2.640000e-170 608.0
34 TraesCS7B01G496900 chr3A 74.441 1162 209 50 1018 2110 701351732 701352874 1.330000e-113 420.0
35 TraesCS7B01G496900 chr3A 73.445 418 76 19 1055 1468 698930511 698930125 1.160000e-24 124.0
36 TraesCS7B01G496900 chr5D 94.578 332 17 1 243 573 555573087 555573418 2.130000e-141 512.0
37 TraesCS7B01G496900 chr2D 94.578 332 16 2 243 573 78432906 78433236 2.130000e-141 512.0
38 TraesCS7B01G496900 chr1A 92.771 332 23 1 243 573 22548548 22548217 2.160000e-131 479.0
39 TraesCS7B01G496900 chr4A 96.596 235 7 1 570 803 662104937 662104703 3.740000e-104 388.0
40 TraesCS7B01G496900 chr4A 95.708 233 9 1 572 803 609311044 609311276 1.050000e-99 374.0
41 TraesCS7B01G496900 chr4A 95.495 222 9 1 1 222 714119032 714118812 1.360000e-93 353.0
42 TraesCS7B01G496900 chr7A 95.708 233 9 1 572 803 671178108 671177876 1.050000e-99 374.0
43 TraesCS7B01G496900 chr7A 90.698 43 4 0 894 936 235451632 235451674 1.200000e-04 58.4
44 TraesCS7B01G496900 chr3B 95.708 233 9 1 572 803 89596431 89596663 1.050000e-99 374.0
45 TraesCS7B01G496900 chr3B 73.223 422 85 17 1055 1468 752137278 752136877 9.000000e-26 128.0
46 TraesCS7B01G496900 chr2B 95.708 233 9 1 572 803 35014047 35013815 1.050000e-99 374.0
47 TraesCS7B01G496900 chr1B 95.495 222 9 1 1 222 40870251 40870471 1.360000e-93 353.0
48 TraesCS7B01G496900 chr4B 90.323 186 16 2 2762 2945 12907172 12906987 3.080000e-60 243.0
49 TraesCS7B01G496900 chr6D 88.235 136 6 6 801 936 365011248 365011373 1.480000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G496900 chr7B 747613409 747616500 3091 False 2554.5 3954 100.000 1 3092 2 chr7B.!!$F5 3091
1 TraesCS7B01G496900 chr7B 639687352 639687915 563 False 948.0 948 96.996 1 565 1 chr7B.!!$F1 564
2 TraesCS7B01G496900 chr7B 680687174 680688663 1489 False 373.5 388 96.082 1 803 2 chr7B.!!$F4 802
3 TraesCS7B01G496900 chr6A 596774978 596777380 2402 True 1336.0 1661 92.859 807 3092 2 chr6A.!!$R1 2285
4 TraesCS7B01G496900 chr6B 685206011 685208578 2567 True 1322.0 1613 92.932 815 3092 2 chr6B.!!$R2 2277
5 TraesCS7B01G496900 chr2A 59843273 59843845 572 False 998.0 998 98.084 1 573 1 chr2A.!!$F1 572
6 TraesCS7B01G496900 chrUn 1973114 1973686 572 True 970.0 970 97.213 1 573 1 chrUn.!!$R1 572
7 TraesCS7B01G496900 chrUn 220216163 220216722 559 False 869.0 869 94.425 1 573 1 chrUn.!!$F1 572
8 TraesCS7B01G496900 chrUn 287633337 287634387 1050 False 636.0 636 78.233 1018 2059 1 chrUn.!!$F2 1041
9 TraesCS7B01G496900 chrUn 292971627 292972677 1050 True 636.0 636 78.233 1018 2059 1 chrUn.!!$R2 1041
10 TraesCS7B01G496900 chrUn 338767050 338767959 909 True 514.0 514 77.623 1159 2059 1 chrUn.!!$R3 900
11 TraesCS7B01G496900 chr5B 523827989 523828562 573 False 920.0 920 95.645 1 573 1 chr5B.!!$F1 572
12 TraesCS7B01G496900 chr7D 630664360 630664885 525 True 815.0 815 94.707 49 573 1 chr7D.!!$R1 524
13 TraesCS7B01G496900 chr3D 569118458 569119514 1056 True 647.0 647 78.366 1018 2059 1 chr3D.!!$R2 1041
14 TraesCS7B01G496900 chr3D 568112292 568112882 590 False 599.0 599 84.918 2484 3092 1 chr3D.!!$F2 608
15 TraesCS7B01G496900 chr3D 567689014 567691111 2097 True 472.5 501 78.442 999 3092 2 chr3D.!!$R3 2093
16 TraesCS7B01G496900 chr3D 567487038 567487620 582 False 314.0 435 85.596 2468 3092 2 chr3D.!!$F3 624
17 TraesCS7B01G496900 chr3A 701643461 701644518 1057 False 608.0 608 77.778 1019 2059 1 chr3A.!!$F2 1040
18 TraesCS7B01G496900 chr3A 701351732 701352874 1142 False 420.0 420 74.441 1018 2110 1 chr3A.!!$F1 1092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1572 0.098376 GCTACTGATTGCTGCACTGC 59.902 55.0 0.0 0.0 0.0 4.40 F
981 1713 0.324738 CCCACTGCCACTCCTCTCTA 60.325 60.0 0.0 0.0 0.0 2.43 F
984 1716 0.409876 ACTGCCACTCCTCTCTACCA 59.590 55.0 0.0 0.0 0.0 3.25 F
1738 2536 0.743097 GATGGATGACTTGCTTGGCC 59.257 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 2465 0.302890 GAACAATCGGAGAGCGCATG 59.697 55.000 11.47 0.00 43.63 4.06 R
1854 2655 0.875728 TCACATACCAAAAACCGCGG 59.124 50.000 26.86 26.86 0.00 6.46 R
2031 2847 1.377725 CTCTGGTGCCGGAAAGCAT 60.378 57.895 5.05 0.00 46.24 3.79 R
2753 4204 3.255395 TGAACATGAATGAACGGCAACAT 59.745 39.130 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 232 5.769662 TGACACTTCATGGTCTTGCTAAAAT 59.230 36.000 0.00 0.00 35.11 1.82
234 236 8.246180 ACACTTCATGGTCTTGCTAAAATAATG 58.754 33.333 0.00 0.00 0.00 1.90
291 294 4.015872 TGGTCCGTGATCTAAGCTTTTT 57.984 40.909 3.20 0.00 0.00 1.94
567 1139 0.815095 TATCACCGCAGCTCTTTCGA 59.185 50.000 0.00 0.00 0.00 3.71
574 1306 1.195448 CGCAGCTCTTTCGAATTGTGT 59.805 47.619 0.00 0.00 0.00 3.72
611 1343 5.680619 TGTGGTCTTTTAGATGACTTGTGT 58.319 37.500 0.23 0.00 34.01 3.72
612 1344 5.527214 TGTGGTCTTTTAGATGACTTGTGTG 59.473 40.000 0.23 0.00 34.01 3.82
614 1346 4.757149 GGTCTTTTAGATGACTTGTGTGCT 59.243 41.667 0.23 0.00 34.01 4.40
615 1347 5.239525 GGTCTTTTAGATGACTTGTGTGCTT 59.760 40.000 0.23 0.00 34.01 3.91
616 1348 6.366630 GTCTTTTAGATGACTTGTGTGCTTC 58.633 40.000 0.00 0.00 0.00 3.86
617 1349 6.203723 GTCTTTTAGATGACTTGTGTGCTTCT 59.796 38.462 0.00 0.00 0.00 2.85
618 1350 6.767902 TCTTTTAGATGACTTGTGTGCTTCTT 59.232 34.615 0.00 0.00 0.00 2.52
619 1351 6.942532 TTTAGATGACTTGTGTGCTTCTTT 57.057 33.333 0.00 0.00 0.00 2.52
620 1352 8.445275 TTTTAGATGACTTGTGTGCTTCTTTA 57.555 30.769 0.00 0.00 0.00 1.85
621 1353 7.658179 TTAGATGACTTGTGTGCTTCTTTAG 57.342 36.000 0.00 0.00 0.00 1.85
622 1354 5.858381 AGATGACTTGTGTGCTTCTTTAGA 58.142 37.500 0.00 0.00 0.00 2.10
623 1355 6.471146 AGATGACTTGTGTGCTTCTTTAGAT 58.529 36.000 0.00 0.00 0.00 1.98
624 1356 5.929697 TGACTTGTGTGCTTCTTTAGATG 57.070 39.130 0.00 0.00 0.00 2.90
625 1357 4.214119 TGACTTGTGTGCTTCTTTAGATGC 59.786 41.667 9.88 9.88 43.15 3.91
626 1358 4.392940 ACTTGTGTGCTTCTTTAGATGCT 58.607 39.130 15.79 0.00 43.23 3.79
627 1359 4.823989 ACTTGTGTGCTTCTTTAGATGCTT 59.176 37.500 15.79 0.00 43.23 3.91
628 1360 5.997746 ACTTGTGTGCTTCTTTAGATGCTTA 59.002 36.000 15.79 5.26 43.23 3.09
629 1361 6.656693 ACTTGTGTGCTTCTTTAGATGCTTAT 59.343 34.615 15.79 0.00 43.23 1.73
630 1362 6.426980 TGTGTGCTTCTTTAGATGCTTATG 57.573 37.500 15.79 0.00 43.23 1.90
631 1363 5.939883 TGTGTGCTTCTTTAGATGCTTATGT 59.060 36.000 15.79 0.00 43.23 2.29
632 1364 6.430925 TGTGTGCTTCTTTAGATGCTTATGTT 59.569 34.615 15.79 0.00 43.23 2.71
633 1365 7.040478 TGTGTGCTTCTTTAGATGCTTATGTTT 60.040 33.333 15.79 0.00 43.23 2.83
634 1366 7.272084 GTGTGCTTCTTTAGATGCTTATGTTTG 59.728 37.037 15.79 0.00 43.23 2.93
635 1367 7.040478 TGTGCTTCTTTAGATGCTTATGTTTGT 60.040 33.333 15.79 0.00 43.23 2.83
636 1368 7.272084 GTGCTTCTTTAGATGCTTATGTTTGTG 59.728 37.037 15.79 0.00 43.23 3.33
637 1369 7.174772 TGCTTCTTTAGATGCTTATGTTTGTGA 59.825 33.333 15.79 0.00 43.23 3.58
638 1370 8.186821 GCTTCTTTAGATGCTTATGTTTGTGAT 58.813 33.333 9.61 0.00 40.69 3.06
639 1371 9.499585 CTTCTTTAGATGCTTATGTTTGTGATG 57.500 33.333 0.00 0.00 0.00 3.07
640 1372 8.791327 TCTTTAGATGCTTATGTTTGTGATGA 57.209 30.769 0.00 0.00 0.00 2.92
641 1373 9.399797 TCTTTAGATGCTTATGTTTGTGATGAT 57.600 29.630 0.00 0.00 0.00 2.45
642 1374 9.447040 CTTTAGATGCTTATGTTTGTGATGATG 57.553 33.333 0.00 0.00 0.00 3.07
643 1375 6.387041 AGATGCTTATGTTTGTGATGATGG 57.613 37.500 0.00 0.00 0.00 3.51
644 1376 5.889853 AGATGCTTATGTTTGTGATGATGGT 59.110 36.000 0.00 0.00 0.00 3.55
645 1377 5.981088 TGCTTATGTTTGTGATGATGGTT 57.019 34.783 0.00 0.00 0.00 3.67
646 1378 7.557358 AGATGCTTATGTTTGTGATGATGGTTA 59.443 33.333 0.00 0.00 0.00 2.85
647 1379 7.643569 TGCTTATGTTTGTGATGATGGTTAT 57.356 32.000 0.00 0.00 0.00 1.89
648 1380 7.482474 TGCTTATGTTTGTGATGATGGTTATG 58.518 34.615 0.00 0.00 0.00 1.90
649 1381 7.122501 TGCTTATGTTTGTGATGATGGTTATGT 59.877 33.333 0.00 0.00 0.00 2.29
650 1382 7.975616 GCTTATGTTTGTGATGATGGTTATGTT 59.024 33.333 0.00 0.00 0.00 2.71
651 1383 9.859427 CTTATGTTTGTGATGATGGTTATGTTT 57.141 29.630 0.00 0.00 0.00 2.83
654 1386 8.586570 TGTTTGTGATGATGGTTATGTTTTTC 57.413 30.769 0.00 0.00 0.00 2.29
655 1387 8.200120 TGTTTGTGATGATGGTTATGTTTTTCA 58.800 29.630 0.00 0.00 0.00 2.69
656 1388 9.206870 GTTTGTGATGATGGTTATGTTTTTCAT 57.793 29.630 0.00 0.00 40.25 2.57
657 1389 8.760103 TTGTGATGATGGTTATGTTTTTCATG 57.240 30.769 0.00 0.00 37.91 3.07
658 1390 8.120140 TGTGATGATGGTTATGTTTTTCATGA 57.880 30.769 0.00 0.00 37.91 3.07
659 1391 8.751242 TGTGATGATGGTTATGTTTTTCATGAT 58.249 29.630 0.00 0.00 37.91 2.45
681 1413 9.851686 ATGATACTTATATTGTTGTGATGGTGT 57.148 29.630 0.00 0.00 0.00 4.16
682 1414 9.679661 TGATACTTATATTGTTGTGATGGTGTT 57.320 29.630 0.00 0.00 0.00 3.32
689 1421 8.984891 ATATTGTTGTGATGGTGTTTATTGTG 57.015 30.769 0.00 0.00 0.00 3.33
690 1422 6.456795 TTGTTGTGATGGTGTTTATTGTGA 57.543 33.333 0.00 0.00 0.00 3.58
691 1423 6.070897 TGTTGTGATGGTGTTTATTGTGAG 57.929 37.500 0.00 0.00 0.00 3.51
692 1424 5.009510 TGTTGTGATGGTGTTTATTGTGAGG 59.990 40.000 0.00 0.00 0.00 3.86
693 1425 4.979335 TGTGATGGTGTTTATTGTGAGGA 58.021 39.130 0.00 0.00 0.00 3.71
694 1426 5.569355 TGTGATGGTGTTTATTGTGAGGAT 58.431 37.500 0.00 0.00 0.00 3.24
695 1427 5.415389 TGTGATGGTGTTTATTGTGAGGATG 59.585 40.000 0.00 0.00 0.00 3.51
696 1428 5.647658 GTGATGGTGTTTATTGTGAGGATGA 59.352 40.000 0.00 0.00 0.00 2.92
697 1429 6.319658 GTGATGGTGTTTATTGTGAGGATGAT 59.680 38.462 0.00 0.00 0.00 2.45
698 1430 7.498900 GTGATGGTGTTTATTGTGAGGATGATA 59.501 37.037 0.00 0.00 0.00 2.15
699 1431 7.498900 TGATGGTGTTTATTGTGAGGATGATAC 59.501 37.037 0.00 0.00 0.00 2.24
700 1432 6.957631 TGGTGTTTATTGTGAGGATGATACT 58.042 36.000 0.00 0.00 0.00 2.12
701 1433 7.402054 TGGTGTTTATTGTGAGGATGATACTT 58.598 34.615 0.00 0.00 0.00 2.24
702 1434 8.544622 TGGTGTTTATTGTGAGGATGATACTTA 58.455 33.333 0.00 0.00 0.00 2.24
703 1435 9.561069 GGTGTTTATTGTGAGGATGATACTTAT 57.439 33.333 0.00 0.00 0.00 1.73
761 1493 9.878667 ATATGCTGTGAATTTGAATTGAAATCA 57.121 25.926 3.24 1.80 0.00 2.57
762 1494 8.610248 ATGCTGTGAATTTGAATTGAAATCAA 57.390 26.923 3.24 0.00 40.51 2.57
764 1496 8.336806 TGCTGTGAATTTGAATTGAAATCAAAC 58.663 29.630 10.29 0.40 46.26 2.93
765 1497 8.336806 GCTGTGAATTTGAATTGAAATCAAACA 58.663 29.630 10.29 4.69 46.26 2.83
766 1498 9.858247 CTGTGAATTTGAATTGAAATCAAACAG 57.142 29.630 10.29 17.31 46.26 3.16
767 1499 9.597170 TGTGAATTTGAATTGAAATCAAACAGA 57.403 25.926 10.29 2.19 46.26 3.41
800 1532 4.965119 AAAATCAGACGGAAACTATGCC 57.035 40.909 0.00 0.00 0.00 4.40
801 1533 3.914426 AATCAGACGGAAACTATGCCT 57.086 42.857 0.00 0.00 0.00 4.75
802 1534 5.353394 AAATCAGACGGAAACTATGCCTA 57.647 39.130 0.00 0.00 0.00 3.93
803 1535 5.552870 AATCAGACGGAAACTATGCCTAT 57.447 39.130 0.00 0.00 0.00 2.57
804 1536 4.322080 TCAGACGGAAACTATGCCTATG 57.678 45.455 0.00 0.00 0.00 2.23
805 1537 3.704566 TCAGACGGAAACTATGCCTATGT 59.295 43.478 0.00 0.00 0.00 2.29
806 1538 4.161565 TCAGACGGAAACTATGCCTATGTT 59.838 41.667 0.00 0.00 0.00 2.71
807 1539 4.271049 CAGACGGAAACTATGCCTATGTTG 59.729 45.833 0.00 0.00 0.00 3.33
808 1540 2.943033 ACGGAAACTATGCCTATGTTGC 59.057 45.455 0.00 0.00 0.00 4.17
809 1541 2.290641 CGGAAACTATGCCTATGTTGCC 59.709 50.000 0.00 0.00 36.34 4.52
810 1542 3.555966 GGAAACTATGCCTATGTTGCCT 58.444 45.455 0.00 0.00 36.66 4.75
811 1543 3.565902 GGAAACTATGCCTATGTTGCCTC 59.434 47.826 0.00 0.00 36.66 4.70
832 1564 5.178996 CCTCTTGTATGATGCTACTGATTGC 59.821 44.000 0.00 0.00 0.00 3.56
833 1565 5.922053 TCTTGTATGATGCTACTGATTGCT 58.078 37.500 0.00 0.00 0.00 3.91
834 1566 5.756833 TCTTGTATGATGCTACTGATTGCTG 59.243 40.000 0.00 0.00 0.00 4.41
835 1567 3.811497 TGTATGATGCTACTGATTGCTGC 59.189 43.478 0.00 0.00 0.00 5.25
837 1569 2.011947 TGATGCTACTGATTGCTGCAC 58.988 47.619 0.00 0.00 36.44 4.57
840 1572 0.098376 GCTACTGATTGCTGCACTGC 59.902 55.000 0.00 0.00 0.00 4.40
841 1573 1.445871 CTACTGATTGCTGCACTGCA 58.554 50.000 0.00 3.11 41.65 4.41
866 1598 4.037446 TGCACTGGACTGTATTGTTTTTCC 59.963 41.667 0.00 0.00 0.00 3.13
971 1703 3.625897 CCGTCACTCCCACTGCCA 61.626 66.667 0.00 0.00 0.00 4.92
972 1704 2.357517 CGTCACTCCCACTGCCAC 60.358 66.667 0.00 0.00 0.00 5.01
973 1705 2.872388 CGTCACTCCCACTGCCACT 61.872 63.158 0.00 0.00 0.00 4.00
974 1706 1.004440 GTCACTCCCACTGCCACTC 60.004 63.158 0.00 0.00 0.00 3.51
975 1707 2.217038 TCACTCCCACTGCCACTCC 61.217 63.158 0.00 0.00 0.00 3.85
976 1708 2.205462 ACTCCCACTGCCACTCCT 59.795 61.111 0.00 0.00 0.00 3.69
977 1709 1.915769 ACTCCCACTGCCACTCCTC 60.916 63.158 0.00 0.00 0.00 3.71
978 1710 1.611851 CTCCCACTGCCACTCCTCT 60.612 63.158 0.00 0.00 0.00 3.69
979 1711 1.610673 TCCCACTGCCACTCCTCTC 60.611 63.158 0.00 0.00 0.00 3.20
980 1712 1.611851 CCCACTGCCACTCCTCTCT 60.612 63.158 0.00 0.00 0.00 3.10
981 1713 0.324738 CCCACTGCCACTCCTCTCTA 60.325 60.000 0.00 0.00 0.00 2.43
982 1714 0.820871 CCACTGCCACTCCTCTCTAC 59.179 60.000 0.00 0.00 0.00 2.59
983 1715 0.820871 CACTGCCACTCCTCTCTACC 59.179 60.000 0.00 0.00 0.00 3.18
984 1716 0.409876 ACTGCCACTCCTCTCTACCA 59.590 55.000 0.00 0.00 0.00 3.25
985 1717 0.820871 CTGCCACTCCTCTCTACCAC 59.179 60.000 0.00 0.00 0.00 4.16
986 1718 0.409876 TGCCACTCCTCTCTACCACT 59.590 55.000 0.00 0.00 0.00 4.00
987 1719 0.820871 GCCACTCCTCTCTACCACTG 59.179 60.000 0.00 0.00 0.00 3.66
988 1720 0.820871 CCACTCCTCTCTACCACTGC 59.179 60.000 0.00 0.00 0.00 4.40
1005 1737 2.124612 CTGCACGGATCCATGGCA 60.125 61.111 10.33 14.85 0.00 4.92
1112 1844 4.662961 CCGTGCAGTCTGCCACGA 62.663 66.667 32.58 13.15 44.44 4.35
1209 1959 2.083774 GCTGAAATTGACGACCCATCA 58.916 47.619 0.00 0.00 0.00 3.07
1222 1972 3.368843 CGACCCATCATCCATAGACATCC 60.369 52.174 0.00 0.00 0.00 3.51
1226 1976 4.473922 CCCATCATCCATAGACATCCTCAT 59.526 45.833 0.00 0.00 0.00 2.90
1233 1983 3.008813 CCATAGACATCCTCATCCCCTTG 59.991 52.174 0.00 0.00 0.00 3.61
1238 1988 1.064824 ATCCTCATCCCCTTGCCCTC 61.065 60.000 0.00 0.00 0.00 4.30
1282 2040 3.745803 AGTCCGTCGCCCGACTTC 61.746 66.667 17.39 8.42 42.54 3.01
1297 2055 4.651008 TTCGTGGTGCCGACGACC 62.651 66.667 10.86 0.00 45.11 4.79
1392 2171 1.218047 GGCCACTCGTCAGTATGCA 59.782 57.895 0.00 0.00 33.25 3.96
1425 2204 2.922335 GCTTGATGGCTTCACGGTTTTC 60.922 50.000 2.09 0.00 32.84 2.29
1506 2285 2.590821 ACTGATGCTCAAAGTGGCTTT 58.409 42.857 0.00 0.00 33.58 3.51
1523 2302 4.153475 TGGCTTTTACGTCTTCACATTAGC 59.847 41.667 0.00 0.00 0.00 3.09
1578 2357 2.978010 CCTGCCGCGGAACTGTTT 60.978 61.111 33.48 0.00 0.00 2.83
1599 2387 2.680841 TCAACACGAACCTGTCCTTTTG 59.319 45.455 0.00 0.00 0.00 2.44
1618 2406 2.114670 CGTGGTAGCCTGCATTGGG 61.115 63.158 0.00 0.00 0.00 4.12
1619 2407 1.754234 GTGGTAGCCTGCATTGGGG 60.754 63.158 0.00 0.00 0.00 4.96
1671 2465 2.946762 GCTGAGTTGTTCCGGCAC 59.053 61.111 0.00 0.00 0.00 5.01
1724 2518 2.303022 GGTCTGACCTGTTTGAGATGGA 59.697 50.000 19.53 0.00 34.73 3.41
1738 2536 0.743097 GATGGATGACTTGCTTGGCC 59.257 55.000 0.00 0.00 0.00 5.36
1753 2551 4.640201 TGCTTGGCCTGTACATTCTTAATC 59.360 41.667 3.32 0.00 0.00 1.75
1799 2597 1.281899 GTGATGCAGGACTACGAAGC 58.718 55.000 0.00 0.00 0.00 3.86
1854 2655 1.929836 CCGATTGCAGAGCTAAGTGTC 59.070 52.381 0.00 0.00 0.00 3.67
1873 2689 0.875728 CCGCGGTTTTTGGTATGTGA 59.124 50.000 19.50 0.00 0.00 3.58
1902 2718 2.537633 ATTGGGATGGTGATGTGCTT 57.462 45.000 0.00 0.00 0.00 3.91
1916 2732 1.270571 TGTGCTTGTGCTGGTCGATAA 60.271 47.619 0.00 0.00 40.48 1.75
1945 2761 3.305471 GGACTCGCTACTTCAGTTTGACT 60.305 47.826 0.00 0.00 0.00 3.41
1974 2790 4.935885 CAAGTTGATTGCTAGTCTCCAC 57.064 45.455 0.00 0.00 30.65 4.02
1975 2791 4.573900 CAAGTTGATTGCTAGTCTCCACT 58.426 43.478 0.00 0.00 32.22 4.00
1982 2798 1.479730 TGCTAGTCTCCACTGCAGATG 59.520 52.381 23.35 14.55 34.03 2.90
2007 2823 0.750850 GCCATAGTGGACTTCGGCTA 59.249 55.000 10.46 0.00 40.96 3.93
2131 3474 3.027412 TCAGAGCCTGTATCAAGGTCTC 58.973 50.000 2.68 6.58 39.75 3.36
2133 3476 3.196469 CAGAGCCTGTATCAAGGTCTCAA 59.804 47.826 13.46 0.00 40.27 3.02
2136 3479 5.045286 AGAGCCTGTATCAAGGTCTCAATTT 60.045 40.000 13.46 0.00 40.27 1.82
2137 3480 4.946157 AGCCTGTATCAAGGTCTCAATTTG 59.054 41.667 0.00 0.00 39.75 2.32
2139 3482 5.183904 GCCTGTATCAAGGTCTCAATTTGTT 59.816 40.000 0.00 0.00 39.75 2.83
2140 3483 6.623767 GCCTGTATCAAGGTCTCAATTTGTTC 60.624 42.308 0.00 0.00 39.75 3.18
2522 3971 7.390440 TCTGTTCATTGAACCGAATAATTGACT 59.610 33.333 23.22 0.00 41.35 3.41
2524 3973 8.356657 TGTTCATTGAACCGAATAATTGACTTT 58.643 29.630 23.22 0.00 41.35 2.66
2655 4104 7.712205 GCAAATGGTGAAATAAGGCAGATTATT 59.288 33.333 0.00 0.00 37.02 1.40
2696 4145 4.067896 GTTGCACCTGATTTCAGAAGAGA 58.932 43.478 9.15 0.00 46.59 3.10
2760 4211 6.624423 ACTTTCAACTCAATATGATGTTGCC 58.376 36.000 13.23 0.00 36.44 4.52
2802 4253 6.381498 TTCCATTAACATCTGGTCAGGTAA 57.619 37.500 0.00 0.00 34.03 2.85
2812 4263 7.402054 ACATCTGGTCAGGTAATGAAACATAA 58.598 34.615 5.51 0.00 40.43 1.90
2840 4293 9.289303 GTTATAATTCTGCCTTTGTGTTGTATG 57.711 33.333 0.00 0.00 0.00 2.39
3040 4494 7.872881 AGTTATGATCAATGATCTGTGAATGC 58.127 34.615 22.10 6.74 39.56 3.56
3057 4512 4.202233 TGAATGCTTCATGGTTGCTTGAAA 60.202 37.500 0.00 0.00 34.08 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
567 1139 7.285401 ACCACAAGTCATCTAAAGAACACAATT 59.715 33.333 0.00 0.00 0.00 2.32
611 1343 7.174772 TCACAAACATAAGCATCTAAAGAAGCA 59.825 33.333 9.60 0.00 40.83 3.91
612 1344 7.530010 TCACAAACATAAGCATCTAAAGAAGC 58.470 34.615 0.00 0.00 38.88 3.86
614 1346 9.230122 TCATCACAAACATAAGCATCTAAAGAA 57.770 29.630 0.00 0.00 0.00 2.52
615 1347 8.791327 TCATCACAAACATAAGCATCTAAAGA 57.209 30.769 0.00 0.00 0.00 2.52
616 1348 9.447040 CATCATCACAAACATAAGCATCTAAAG 57.553 33.333 0.00 0.00 0.00 1.85
617 1349 8.407832 CCATCATCACAAACATAAGCATCTAAA 58.592 33.333 0.00 0.00 0.00 1.85
618 1350 7.557358 ACCATCATCACAAACATAAGCATCTAA 59.443 33.333 0.00 0.00 0.00 2.10
619 1351 7.056006 ACCATCATCACAAACATAAGCATCTA 58.944 34.615 0.00 0.00 0.00 1.98
620 1352 5.889853 ACCATCATCACAAACATAAGCATCT 59.110 36.000 0.00 0.00 0.00 2.90
621 1353 6.140303 ACCATCATCACAAACATAAGCATC 57.860 37.500 0.00 0.00 0.00 3.91
622 1354 6.534475 AACCATCATCACAAACATAAGCAT 57.466 33.333 0.00 0.00 0.00 3.79
623 1355 5.981088 AACCATCATCACAAACATAAGCA 57.019 34.783 0.00 0.00 0.00 3.91
624 1356 7.483307 ACATAACCATCATCACAAACATAAGC 58.517 34.615 0.00 0.00 0.00 3.09
625 1357 9.859427 AAACATAACCATCATCACAAACATAAG 57.141 29.630 0.00 0.00 0.00 1.73
628 1360 9.206870 GAAAAACATAACCATCATCACAAACAT 57.793 29.630 0.00 0.00 0.00 2.71
629 1361 8.200120 TGAAAAACATAACCATCATCACAAACA 58.800 29.630 0.00 0.00 0.00 2.83
630 1362 8.586570 TGAAAAACATAACCATCATCACAAAC 57.413 30.769 0.00 0.00 0.00 2.93
631 1363 9.205719 CATGAAAAACATAACCATCATCACAAA 57.794 29.630 0.00 0.00 37.46 2.83
632 1364 8.583296 TCATGAAAAACATAACCATCATCACAA 58.417 29.630 0.00 0.00 37.46 3.33
633 1365 8.120140 TCATGAAAAACATAACCATCATCACA 57.880 30.769 0.00 0.00 37.46 3.58
655 1387 9.851686 ACACCATCACAACAATATAAGTATCAT 57.148 29.630 0.00 0.00 0.00 2.45
656 1388 9.679661 AACACCATCACAACAATATAAGTATCA 57.320 29.630 0.00 0.00 0.00 2.15
664 1396 8.801299 TCACAATAAACACCATCACAACAATAT 58.199 29.630 0.00 0.00 0.00 1.28
665 1397 8.171164 TCACAATAAACACCATCACAACAATA 57.829 30.769 0.00 0.00 0.00 1.90
666 1398 7.048629 TCACAATAAACACCATCACAACAAT 57.951 32.000 0.00 0.00 0.00 2.71
667 1399 6.456795 TCACAATAAACACCATCACAACAA 57.543 33.333 0.00 0.00 0.00 2.83
668 1400 5.009510 CCTCACAATAAACACCATCACAACA 59.990 40.000 0.00 0.00 0.00 3.33
669 1401 5.240623 TCCTCACAATAAACACCATCACAAC 59.759 40.000 0.00 0.00 0.00 3.32
670 1402 5.380900 TCCTCACAATAAACACCATCACAA 58.619 37.500 0.00 0.00 0.00 3.33
671 1403 4.979335 TCCTCACAATAAACACCATCACA 58.021 39.130 0.00 0.00 0.00 3.58
672 1404 5.647658 TCATCCTCACAATAAACACCATCAC 59.352 40.000 0.00 0.00 0.00 3.06
673 1405 5.814481 TCATCCTCACAATAAACACCATCA 58.186 37.500 0.00 0.00 0.00 3.07
674 1406 6.949352 ATCATCCTCACAATAAACACCATC 57.051 37.500 0.00 0.00 0.00 3.51
675 1407 7.577303 AGTATCATCCTCACAATAAACACCAT 58.423 34.615 0.00 0.00 0.00 3.55
676 1408 6.957631 AGTATCATCCTCACAATAAACACCA 58.042 36.000 0.00 0.00 0.00 4.17
677 1409 7.865706 AAGTATCATCCTCACAATAAACACC 57.134 36.000 0.00 0.00 0.00 4.16
735 1467 9.878667 TGATTTCAATTCAAATTCACAGCATAT 57.121 25.926 0.00 0.00 0.00 1.78
736 1468 9.708092 TTGATTTCAATTCAAATTCACAGCATA 57.292 25.926 0.00 0.00 0.00 3.14
737 1469 8.610248 TTGATTTCAATTCAAATTCACAGCAT 57.390 26.923 0.00 0.00 0.00 3.79
738 1470 8.336806 GTTTGATTTCAATTCAAATTCACAGCA 58.663 29.630 9.98 0.00 36.06 4.41
739 1471 8.336806 TGTTTGATTTCAATTCAAATTCACAGC 58.663 29.630 9.98 0.00 36.06 4.40
740 1472 9.858247 CTGTTTGATTTCAATTCAAATTCACAG 57.142 29.630 9.98 9.37 36.06 3.66
741 1473 9.597170 TCTGTTTGATTTCAATTCAAATTCACA 57.403 25.926 9.98 4.58 36.06 3.58
778 1510 5.010282 AGGCATAGTTTCCGTCTGATTTTT 58.990 37.500 0.00 0.00 0.00 1.94
779 1511 4.589908 AGGCATAGTTTCCGTCTGATTTT 58.410 39.130 0.00 0.00 0.00 1.82
780 1512 4.222124 AGGCATAGTTTCCGTCTGATTT 57.778 40.909 0.00 0.00 0.00 2.17
781 1513 3.914426 AGGCATAGTTTCCGTCTGATT 57.086 42.857 0.00 0.00 0.00 2.57
782 1514 4.345257 ACATAGGCATAGTTTCCGTCTGAT 59.655 41.667 0.00 0.00 0.00 2.90
783 1515 3.704566 ACATAGGCATAGTTTCCGTCTGA 59.295 43.478 0.00 0.00 0.00 3.27
784 1516 4.060038 ACATAGGCATAGTTTCCGTCTG 57.940 45.455 0.00 0.00 0.00 3.51
785 1517 4.442706 CAACATAGGCATAGTTTCCGTCT 58.557 43.478 0.00 0.00 0.00 4.18
786 1518 3.002348 GCAACATAGGCATAGTTTCCGTC 59.998 47.826 0.00 0.00 0.00 4.79
787 1519 2.943033 GCAACATAGGCATAGTTTCCGT 59.057 45.455 0.00 0.00 0.00 4.69
788 1520 2.290641 GGCAACATAGGCATAGTTTCCG 59.709 50.000 0.00 0.00 0.00 4.30
789 1521 3.555966 AGGCAACATAGGCATAGTTTCC 58.444 45.455 0.00 2.83 41.41 3.13
790 1522 4.455606 AGAGGCAACATAGGCATAGTTTC 58.544 43.478 0.00 0.00 41.41 2.78
791 1523 4.510167 AGAGGCAACATAGGCATAGTTT 57.490 40.909 0.00 0.00 41.41 2.66
792 1524 4.202441 CAAGAGGCAACATAGGCATAGTT 58.798 43.478 0.00 0.00 41.41 2.24
793 1525 3.200825 ACAAGAGGCAACATAGGCATAGT 59.799 43.478 0.00 0.00 41.41 2.12
794 1526 3.813443 ACAAGAGGCAACATAGGCATAG 58.187 45.455 0.00 0.00 41.41 2.23
795 1527 3.931907 ACAAGAGGCAACATAGGCATA 57.068 42.857 0.00 0.00 41.41 3.14
796 1528 2.814805 ACAAGAGGCAACATAGGCAT 57.185 45.000 0.00 0.00 41.41 4.40
797 1529 3.199727 TCATACAAGAGGCAACATAGGCA 59.800 43.478 0.00 0.00 41.41 4.75
798 1530 3.808728 TCATACAAGAGGCAACATAGGC 58.191 45.455 0.00 0.00 41.41 3.93
799 1531 4.214971 GCATCATACAAGAGGCAACATAGG 59.785 45.833 0.00 0.00 44.15 2.57
800 1532 5.061853 AGCATCATACAAGAGGCAACATAG 58.938 41.667 3.42 0.00 46.90 2.23
801 1533 5.039920 AGCATCATACAAGAGGCAACATA 57.960 39.130 3.42 0.00 46.90 2.29
802 1534 3.894759 AGCATCATACAAGAGGCAACAT 58.105 40.909 3.42 0.00 46.90 2.71
803 1535 3.354948 AGCATCATACAAGAGGCAACA 57.645 42.857 3.42 0.00 46.90 3.33
804 1536 4.272018 CAGTAGCATCATACAAGAGGCAAC 59.728 45.833 3.42 0.00 46.90 4.17
805 1537 4.162131 TCAGTAGCATCATACAAGAGGCAA 59.838 41.667 3.42 0.00 46.90 4.52
806 1538 3.706086 TCAGTAGCATCATACAAGAGGCA 59.294 43.478 3.42 0.00 46.90 4.75
807 1539 4.327982 TCAGTAGCATCATACAAGAGGC 57.672 45.455 0.00 0.00 45.01 4.70
808 1540 5.178996 GCAATCAGTAGCATCATACAAGAGG 59.821 44.000 0.00 0.00 0.00 3.69
809 1541 5.990386 AGCAATCAGTAGCATCATACAAGAG 59.010 40.000 0.00 0.00 0.00 2.85
810 1542 5.756833 CAGCAATCAGTAGCATCATACAAGA 59.243 40.000 0.00 0.00 0.00 3.02
811 1543 5.560375 GCAGCAATCAGTAGCATCATACAAG 60.560 44.000 0.00 0.00 0.00 3.16
837 1569 0.033920 TACAGTCCAGTGCAGTGCAG 59.966 55.000 20.42 7.82 40.08 4.41
840 1572 2.771089 ACAATACAGTCCAGTGCAGTG 58.229 47.619 14.95 14.95 0.00 3.66
841 1573 3.492102 AACAATACAGTCCAGTGCAGT 57.508 42.857 0.00 0.00 0.00 4.40
866 1598 3.123157 ACTAGCAATAGCATCAGCAGG 57.877 47.619 0.00 0.00 45.49 4.85
970 1702 1.476085 CAGCAGTGGTAGAGAGGAGTG 59.524 57.143 0.00 0.00 0.00 3.51
971 1703 1.846007 CAGCAGTGGTAGAGAGGAGT 58.154 55.000 0.00 0.00 0.00 3.85
972 1704 0.459489 GCAGCAGTGGTAGAGAGGAG 59.541 60.000 0.00 0.00 0.00 3.69
973 1705 0.251787 TGCAGCAGTGGTAGAGAGGA 60.252 55.000 0.00 0.00 0.00 3.71
974 1706 0.108424 GTGCAGCAGTGGTAGAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
975 1707 0.457509 CGTGCAGCAGTGGTAGAGAG 60.458 60.000 0.00 0.00 0.00 3.20
976 1708 1.586541 CGTGCAGCAGTGGTAGAGA 59.413 57.895 0.00 0.00 0.00 3.10
977 1709 1.446792 CCGTGCAGCAGTGGTAGAG 60.447 63.158 0.00 0.00 0.00 2.43
978 1710 1.257750 ATCCGTGCAGCAGTGGTAGA 61.258 55.000 12.35 0.00 0.00 2.59
979 1711 0.807667 GATCCGTGCAGCAGTGGTAG 60.808 60.000 12.35 0.00 0.00 3.18
980 1712 1.218047 GATCCGTGCAGCAGTGGTA 59.782 57.895 12.35 2.01 0.00 3.25
981 1713 2.046892 GATCCGTGCAGCAGTGGT 60.047 61.111 12.35 0.00 0.00 4.16
982 1714 2.821366 GGATCCGTGCAGCAGTGG 60.821 66.667 7.22 7.22 0.00 4.00
983 1715 1.450848 ATGGATCCGTGCAGCAGTG 60.451 57.895 5.41 0.00 0.00 3.66
984 1716 1.450848 CATGGATCCGTGCAGCAGT 60.451 57.895 20.90 0.00 0.00 4.40
985 1717 2.184830 CCATGGATCCGTGCAGCAG 61.185 63.158 26.18 10.21 0.00 4.24
986 1718 2.124612 CCATGGATCCGTGCAGCA 60.125 61.111 26.18 0.00 0.00 4.41
987 1719 3.589881 GCCATGGATCCGTGCAGC 61.590 66.667 26.18 20.93 0.00 5.25
988 1720 2.124612 TGCCATGGATCCGTGCAG 60.125 61.111 26.18 15.67 0.00 4.41
1005 1737 1.203112 TGGAGGAGACTTGCTGACTCT 60.203 52.381 0.00 0.00 44.43 3.24
1174 1906 0.545787 TCAGCGTAAAGGAGGGGGAA 60.546 55.000 0.00 0.00 0.00 3.97
1209 1959 3.080308 AGGGGATGAGGATGTCTATGGAT 59.920 47.826 0.00 0.00 0.00 3.41
1222 1972 2.922234 GGAGGGCAAGGGGATGAG 59.078 66.667 0.00 0.00 0.00 2.90
1349 2113 0.809241 GCAGATGGAGAGGCGTTCAG 60.809 60.000 0.00 0.00 0.00 3.02
1443 2222 2.117156 TCGGTACTCGCTGGTAGGC 61.117 63.158 0.00 0.00 39.05 3.93
1506 2285 4.461431 TCAGAGGCTAATGTGAAGACGTAA 59.539 41.667 0.00 0.00 0.00 3.18
1523 2302 3.368190 CTCGGCTGCTGGTCAGAGG 62.368 68.421 8.89 0.00 45.72 3.69
1562 2341 1.781025 TTGAAACAGTTCCGCGGCAG 61.781 55.000 23.51 12.36 32.28 4.85
1567 2346 0.653636 TCGTGTTGAAACAGTTCCGC 59.346 50.000 0.00 0.00 40.05 5.54
1568 2347 2.538132 GGTTCGTGTTGAAACAGTTCCG 60.538 50.000 0.00 0.00 44.11 4.30
1578 2357 2.680841 CAAAAGGACAGGTTCGTGTTGA 59.319 45.455 0.00 0.00 38.97 3.18
1599 2387 2.764314 CCAATGCAGGCTACCACGC 61.764 63.158 0.00 0.00 0.00 5.34
1618 2406 2.223340 CCATTATCAGTCGCTTTGTGCC 60.223 50.000 0.00 0.00 38.78 5.01
1619 2407 2.420022 ACCATTATCAGTCGCTTTGTGC 59.580 45.455 0.00 0.00 38.57 4.57
1671 2465 0.302890 GAACAATCGGAGAGCGCATG 59.697 55.000 11.47 0.00 43.63 4.06
1703 2497 2.303022 TCCATCTCAAACAGGTCAGACC 59.697 50.000 12.25 12.25 38.99 3.85
1705 2499 3.840078 TCATCCATCTCAAACAGGTCAGA 59.160 43.478 0.00 0.00 0.00 3.27
1724 2518 1.073763 TGTACAGGCCAAGCAAGTCAT 59.926 47.619 5.01 0.00 0.00 3.06
1753 2551 4.392940 ACATGAACAAGGGTCTCTTCTTG 58.607 43.478 0.00 0.00 44.14 3.02
1765 2563 2.163010 GCATCACCCAGACATGAACAAG 59.837 50.000 0.00 0.00 0.00 3.16
1854 2655 0.875728 TCACATACCAAAAACCGCGG 59.124 50.000 26.86 26.86 0.00 6.46
1873 2689 4.288398 TCACCATCCCAATATGCAACATT 58.712 39.130 0.00 0.00 0.00 2.71
1902 2718 3.261580 CTTGTCATTATCGACCAGCACA 58.738 45.455 0.00 0.00 34.88 4.57
1916 2732 2.826128 TGAAGTAGCGAGTCCTTGTCAT 59.174 45.455 0.00 0.00 0.00 3.06
1982 2798 2.480416 CGAAGTCCACTATGGCAGAGAC 60.480 54.545 17.28 3.92 37.47 3.36
2031 2847 1.377725 CTCTGGTGCCGGAAAGCAT 60.378 57.895 5.05 0.00 46.24 3.79
2116 2953 6.824305 AACAAATTGAGACCTTGATACAGG 57.176 37.500 0.00 0.00 40.23 4.00
2522 3971 8.491045 AATGAAGACCTCAATAAAAAGGGAAA 57.509 30.769 0.00 0.00 37.67 3.13
2524 3973 8.491045 AAAATGAAGACCTCAATAAAAAGGGA 57.509 30.769 0.00 0.00 37.67 4.20
2655 4104 4.322049 GCAACTAGCTAGTCAACAAGGAGA 60.322 45.833 26.21 0.00 41.15 3.71
2752 4203 3.492421 ACATGAATGAACGGCAACATC 57.508 42.857 0.00 0.00 0.00 3.06
2753 4204 3.255395 TGAACATGAATGAACGGCAACAT 59.745 39.130 0.00 0.00 0.00 2.71
2812 4263 7.895759 ACAACACAAAGGCAGAATTATAACAT 58.104 30.769 0.00 0.00 0.00 2.71
3040 4494 9.079833 CAAGTATAATTTCAAGCAACCATGAAG 57.920 33.333 0.00 0.00 36.93 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.