Multiple sequence alignment - TraesCS7B01G496500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G496500 chr7B 100.000 3398 0 0 1 3398 747285698 747289095 0.000000e+00 6276
1 TraesCS7B01G496500 chr7B 80.822 2847 449 72 600 3398 746387532 746384735 0.000000e+00 2143
2 TraesCS7B01G496500 chr7B 79.527 2408 458 25 1012 3398 31799026 31796633 0.000000e+00 1683
3 TraesCS7B01G496500 chr7B 79.445 2413 455 27 998 3394 746076198 746073811 0.000000e+00 1670
4 TraesCS7B01G496500 chr7B 81.092 1904 329 23 1511 3398 744652199 744650311 0.000000e+00 1493
5 TraesCS7B01G496500 chr7B 92.462 398 30 0 3001 3398 745101175 745101572 1.370000e-158 569
6 TraesCS7B01G496500 chr7B 84.890 364 53 2 1014 1376 744652669 744652307 1.930000e-97 366
7 TraesCS7B01G496500 chr7B 86.810 326 33 9 140 463 747692502 747692819 4.170000e-94 355
8 TraesCS7B01G496500 chr7B 94.074 135 8 0 1 135 119169219 119169353 4.440000e-49 206
9 TraesCS7B01G496500 chr7D 92.763 2736 169 10 665 3398 633034308 633031600 0.000000e+00 3928
10 TraesCS7B01G496500 chr7D 88.845 2806 275 15 597 3393 633206405 633203629 0.000000e+00 3413
11 TraesCS7B01G496500 chr7D 81.518 2819 441 52 621 3393 633147374 633150158 0.000000e+00 2246
12 TraesCS7B01G496500 chr7D 79.221 1694 309 32 998 2672 631677250 631675581 0.000000e+00 1138
13 TraesCS7B01G496500 chr7D 92.254 142 11 0 1 142 530406888 530406747 5.750000e-48 202
14 TraesCS7B01G496500 chr7D 90.698 86 8 0 459 544 633175045 633175130 7.710000e-22 115
15 TraesCS7B01G496500 chr7A 81.016 2402 424 24 1012 3394 20049796 20047408 0.000000e+00 1881
16 TraesCS7B01G496500 chrUn 80.748 2405 423 25 1012 3394 50622218 50624604 0.000000e+00 1840
17 TraesCS7B01G496500 chrUn 88.396 293 33 1 969 1260 371727887 371728179 5.390000e-93 351
18 TraesCS7B01G496500 chr4A 80.630 2411 417 30 1012 3398 658968354 658965970 0.000000e+00 1820
19 TraesCS7B01G496500 chr5B 78.560 2416 465 38 1019 3398 663111859 663114257 0.000000e+00 1543
20 TraesCS7B01G496500 chr5B 92.958 142 10 0 1 142 448891756 448891615 1.240000e-49 207
21 TraesCS7B01G496500 chr3B 80.000 1410 266 13 1776 3175 30282807 30284210 0.000000e+00 1027
22 TraesCS7B01G496500 chr3B 90.848 743 67 1 981 1723 30280965 30281706 0.000000e+00 994
23 TraesCS7B01G496500 chr2B 73.758 785 169 30 2404 3168 9897349 9896582 1.200000e-69 274
24 TraesCS7B01G496500 chr6D 94.366 142 8 0 1 142 458986317 458986176 5.710000e-53 219
25 TraesCS7B01G496500 chr6D 92.958 142 10 0 1 142 25766779 25766920 1.240000e-49 207
26 TraesCS7B01G496500 chr1D 92.958 142 10 0 1 142 463491122 463490981 1.240000e-49 207
27 TraesCS7B01G496500 chr5D 94.074 135 8 0 1 135 5112198 5112332 4.440000e-49 206
28 TraesCS7B01G496500 chr1B 94.074 135 8 0 1 135 434424047 434423913 4.440000e-49 206
29 TraesCS7B01G496500 chr4D 92.254 142 11 0 1 142 28982893 28983034 5.750000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G496500 chr7B 747285698 747289095 3397 False 6276.0 6276 100.000 1 3398 1 chr7B.!!$F3 3397
1 TraesCS7B01G496500 chr7B 746384735 746387532 2797 True 2143.0 2143 80.822 600 3398 1 chr7B.!!$R3 2798
2 TraesCS7B01G496500 chr7B 31796633 31799026 2393 True 1683.0 1683 79.527 1012 3398 1 chr7B.!!$R1 2386
3 TraesCS7B01G496500 chr7B 746073811 746076198 2387 True 1670.0 1670 79.445 998 3394 1 chr7B.!!$R2 2396
4 TraesCS7B01G496500 chr7B 744650311 744652669 2358 True 929.5 1493 82.991 1014 3398 2 chr7B.!!$R4 2384
5 TraesCS7B01G496500 chr7D 633031600 633034308 2708 True 3928.0 3928 92.763 665 3398 1 chr7D.!!$R3 2733
6 TraesCS7B01G496500 chr7D 633203629 633206405 2776 True 3413.0 3413 88.845 597 3393 1 chr7D.!!$R4 2796
7 TraesCS7B01G496500 chr7D 633147374 633150158 2784 False 2246.0 2246 81.518 621 3393 1 chr7D.!!$F1 2772
8 TraesCS7B01G496500 chr7D 631675581 631677250 1669 True 1138.0 1138 79.221 998 2672 1 chr7D.!!$R2 1674
9 TraesCS7B01G496500 chr7A 20047408 20049796 2388 True 1881.0 1881 81.016 1012 3394 1 chr7A.!!$R1 2382
10 TraesCS7B01G496500 chrUn 50622218 50624604 2386 False 1840.0 1840 80.748 1012 3394 1 chrUn.!!$F1 2382
11 TraesCS7B01G496500 chr4A 658965970 658968354 2384 True 1820.0 1820 80.630 1012 3398 1 chr4A.!!$R1 2386
12 TraesCS7B01G496500 chr5B 663111859 663114257 2398 False 1543.0 1543 78.560 1019 3398 1 chr5B.!!$F1 2379
13 TraesCS7B01G496500 chr3B 30280965 30284210 3245 False 1010.5 1027 85.424 981 3175 2 chr3B.!!$F1 2194
14 TraesCS7B01G496500 chr2B 9896582 9897349 767 True 274.0 274 73.758 2404 3168 1 chr2B.!!$R1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 469 0.028505 CGCACAGGTTGATGCTATGC 59.971 55.0 0.00 0.0 39.79 3.14 F
1282 1315 0.035036 CCGCATCCATGATCAGCTCT 59.965 55.0 0.09 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1604 0.669932 TGATTGGCATTTGGCGTTGC 60.670 50.000 0.00 0.0 46.16 4.17 R
3130 4365 2.038557 AGGTACCGCAGATGAACAAGTT 59.961 45.455 6.18 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.892130 AGTCTTTTTAGATATTTCGAATGGACT 57.108 29.630 0.00 0.00 0.00 3.85
43 44 9.878667 TTTAGATATTTCGAATGGACTACAACA 57.121 29.630 0.00 0.00 0.00 3.33
46 47 9.477484 AGATATTTCGAATGGACTACAACATAC 57.523 33.333 0.00 0.00 0.00 2.39
47 48 6.583912 ATTTCGAATGGACTACAACATACG 57.416 37.500 0.00 0.00 0.00 3.06
48 49 4.036567 TCGAATGGACTACAACATACGG 57.963 45.455 0.00 0.00 0.00 4.02
49 50 3.695556 TCGAATGGACTACAACATACGGA 59.304 43.478 0.00 0.00 0.00 4.69
50 51 4.340097 TCGAATGGACTACAACATACGGAT 59.660 41.667 0.00 0.00 0.00 4.18
51 52 4.444388 CGAATGGACTACAACATACGGATG 59.556 45.833 5.94 5.94 39.16 3.51
53 54 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
54 55 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
55 56 7.770366 ATGGACTACAACATACGGATGTATA 57.230 36.000 15.10 8.98 45.93 1.47
56 57 7.770366 TGGACTACAACATACGGATGTATAT 57.230 36.000 15.10 5.13 45.93 0.86
57 58 8.866970 TGGACTACAACATACGGATGTATATA 57.133 34.615 15.10 6.07 45.93 0.86
58 59 8.953313 TGGACTACAACATACGGATGTATATAG 58.047 37.037 15.10 16.95 45.93 1.31
59 60 9.170734 GGACTACAACATACGGATGTATATAGA 57.829 37.037 23.06 5.58 45.93 1.98
60 61 9.985318 GACTACAACATACGGATGTATATAGAC 57.015 37.037 23.06 16.72 45.93 2.59
61 62 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
92 93 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
93 94 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
94 95 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
95 96 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
96 97 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
97 98 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
98 99 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
99 100 5.525378 AGATTCACTCATTTTGCTCCGTATC 59.475 40.000 0.00 0.00 0.00 2.24
100 101 4.471904 TCACTCATTTTGCTCCGTATCT 57.528 40.909 0.00 0.00 0.00 1.98
101 102 5.592104 TCACTCATTTTGCTCCGTATCTA 57.408 39.130 0.00 0.00 0.00 1.98
102 103 5.592054 TCACTCATTTTGCTCCGTATCTAG 58.408 41.667 0.00 0.00 0.00 2.43
103 104 5.127194 TCACTCATTTTGCTCCGTATCTAGT 59.873 40.000 0.00 0.00 0.00 2.57
104 105 5.460419 CACTCATTTTGCTCCGTATCTAGTC 59.540 44.000 0.00 0.00 0.00 2.59
105 106 5.127194 ACTCATTTTGCTCCGTATCTAGTCA 59.873 40.000 0.00 0.00 0.00 3.41
106 107 5.348986 TCATTTTGCTCCGTATCTAGTCAC 58.651 41.667 0.00 0.00 0.00 3.67
107 108 5.127194 TCATTTTGCTCCGTATCTAGTCACT 59.873 40.000 0.00 0.00 0.00 3.41
108 109 5.401531 TTTTGCTCCGTATCTAGTCACTT 57.598 39.130 0.00 0.00 0.00 3.16
109 110 4.371855 TTGCTCCGTATCTAGTCACTTG 57.628 45.455 0.00 0.00 0.00 3.16
110 111 3.353557 TGCTCCGTATCTAGTCACTTGT 58.646 45.455 0.00 0.00 0.00 3.16
111 112 3.762288 TGCTCCGTATCTAGTCACTTGTT 59.238 43.478 0.00 0.00 0.00 2.83
112 113 4.106197 GCTCCGTATCTAGTCACTTGTTG 58.894 47.826 0.00 0.00 0.00 3.33
113 114 4.673441 CTCCGTATCTAGTCACTTGTTGG 58.327 47.826 0.00 0.00 0.00 3.77
114 115 4.338012 TCCGTATCTAGTCACTTGTTGGA 58.662 43.478 0.00 0.00 0.00 3.53
115 116 4.768448 TCCGTATCTAGTCACTTGTTGGAA 59.232 41.667 0.00 0.00 0.00 3.53
116 117 5.421056 TCCGTATCTAGTCACTTGTTGGAAT 59.579 40.000 0.00 0.00 0.00 3.01
117 118 6.604396 TCCGTATCTAGTCACTTGTTGGAATA 59.396 38.462 0.00 0.00 0.00 1.75
118 119 7.287005 TCCGTATCTAGTCACTTGTTGGAATAT 59.713 37.037 0.00 0.00 0.00 1.28
119 120 7.595502 CCGTATCTAGTCACTTGTTGGAATATC 59.404 40.741 0.00 0.00 0.00 1.63
120 121 8.353684 CGTATCTAGTCACTTGTTGGAATATCT 58.646 37.037 0.00 0.00 0.00 1.98
127 128 9.793259 AGTCACTTGTTGGAATATCTAAAAAGA 57.207 29.630 11.82 0.00 35.06 2.52
128 129 9.827411 GTCACTTGTTGGAATATCTAAAAAGAC 57.173 33.333 11.82 0.27 35.06 3.01
129 130 9.793259 TCACTTGTTGGAATATCTAAAAAGACT 57.207 29.630 11.82 0.00 35.06 3.24
146 147 8.943909 AAAAAGACTTATATGGAGGAAGTACG 57.056 34.615 0.00 0.00 33.61 3.67
147 148 7.657023 AAAGACTTATATGGAGGAAGTACGT 57.343 36.000 0.00 0.00 33.61 3.57
148 149 6.636562 AGACTTATATGGAGGAAGTACGTG 57.363 41.667 0.00 0.00 33.61 4.49
149 150 6.127793 AGACTTATATGGAGGAAGTACGTGT 58.872 40.000 0.00 0.00 33.61 4.49
150 151 7.285566 AGACTTATATGGAGGAAGTACGTGTA 58.714 38.462 0.00 0.00 33.61 2.90
151 152 7.776969 AGACTTATATGGAGGAAGTACGTGTAA 59.223 37.037 0.00 0.00 33.61 2.41
152 153 8.297470 ACTTATATGGAGGAAGTACGTGTAAA 57.703 34.615 0.00 0.00 31.69 2.01
153 154 8.921205 ACTTATATGGAGGAAGTACGTGTAAAT 58.079 33.333 0.00 0.00 31.69 1.40
157 158 9.924650 ATATGGAGGAAGTACGTGTAAATATTC 57.075 33.333 0.00 0.00 0.00 1.75
158 159 6.576185 TGGAGGAAGTACGTGTAAATATTCC 58.424 40.000 0.00 1.44 35.93 3.01
159 160 6.154877 TGGAGGAAGTACGTGTAAATATTCCA 59.845 38.462 0.00 0.00 37.72 3.53
160 161 7.043565 GGAGGAAGTACGTGTAAATATTCCAA 58.956 38.462 0.00 0.00 37.72 3.53
161 162 7.713942 GGAGGAAGTACGTGTAAATATTCCAAT 59.286 37.037 0.00 0.00 37.72 3.16
162 163 9.754382 GAGGAAGTACGTGTAAATATTCCAATA 57.246 33.333 0.00 0.00 37.72 1.90
163 164 9.538508 AGGAAGTACGTGTAAATATTCCAATAC 57.461 33.333 0.00 0.00 37.72 1.89
164 165 9.316730 GGAAGTACGTGTAAATATTCCAATACA 57.683 33.333 0.00 0.00 35.79 2.29
195 196 9.221933 ACTGTATATAACAATCTCTCTACCTCG 57.778 37.037 0.00 0.00 37.74 4.63
196 197 8.041829 TGTATATAACAATCTCTCTACCTCGC 57.958 38.462 0.00 0.00 34.29 5.03
197 198 4.857509 ATAACAATCTCTCTACCTCGCC 57.142 45.455 0.00 0.00 0.00 5.54
198 199 2.145397 ACAATCTCTCTACCTCGCCA 57.855 50.000 0.00 0.00 0.00 5.69
199 200 2.457598 ACAATCTCTCTACCTCGCCAA 58.542 47.619 0.00 0.00 0.00 4.52
200 201 2.832129 ACAATCTCTCTACCTCGCCAAA 59.168 45.455 0.00 0.00 0.00 3.28
201 202 3.190874 CAATCTCTCTACCTCGCCAAAC 58.809 50.000 0.00 0.00 0.00 2.93
202 203 1.183549 TCTCTCTACCTCGCCAAACC 58.816 55.000 0.00 0.00 0.00 3.27
203 204 1.187087 CTCTCTACCTCGCCAAACCT 58.813 55.000 0.00 0.00 0.00 3.50
204 205 0.895530 TCTCTACCTCGCCAAACCTG 59.104 55.000 0.00 0.00 0.00 4.00
205 206 0.741221 CTCTACCTCGCCAAACCTGC 60.741 60.000 0.00 0.00 0.00 4.85
206 207 1.003839 CTACCTCGCCAAACCTGCA 60.004 57.895 0.00 0.00 0.00 4.41
207 208 1.003839 TACCTCGCCAAACCTGCAG 60.004 57.895 6.78 6.78 0.00 4.41
208 209 1.764571 TACCTCGCCAAACCTGCAGT 61.765 55.000 13.81 0.00 0.00 4.40
209 210 1.003839 CCTCGCCAAACCTGCAGTA 60.004 57.895 13.81 0.00 0.00 2.74
210 211 1.021390 CCTCGCCAAACCTGCAGTAG 61.021 60.000 13.81 0.00 0.00 2.57
211 212 0.320771 CTCGCCAAACCTGCAGTAGT 60.321 55.000 13.81 0.70 0.00 2.73
212 213 0.602638 TCGCCAAACCTGCAGTAGTG 60.603 55.000 13.81 6.86 0.00 2.74
213 214 0.602638 CGCCAAACCTGCAGTAGTGA 60.603 55.000 13.81 0.00 0.00 3.41
214 215 1.826385 GCCAAACCTGCAGTAGTGAT 58.174 50.000 13.81 0.00 0.00 3.06
215 216 1.470098 GCCAAACCTGCAGTAGTGATG 59.530 52.381 13.81 7.43 0.00 3.07
216 217 1.470098 CCAAACCTGCAGTAGTGATGC 59.530 52.381 13.81 0.00 44.11 3.91
217 218 1.470098 CAAACCTGCAGTAGTGATGCC 59.530 52.381 13.81 0.00 43.18 4.40
218 219 0.692476 AACCTGCAGTAGTGATGCCA 59.308 50.000 13.81 0.00 43.18 4.92
219 220 0.036010 ACCTGCAGTAGTGATGCCAC 60.036 55.000 13.81 0.00 43.18 5.01
229 230 1.896220 GTGATGCCACTTGTCTTGGA 58.104 50.000 0.00 0.00 40.10 3.53
230 231 1.537202 GTGATGCCACTTGTCTTGGAC 59.463 52.381 0.00 0.00 40.10 4.02
231 232 1.168714 GATGCCACTTGTCTTGGACC 58.831 55.000 0.00 0.00 36.02 4.46
232 233 0.606401 ATGCCACTTGTCTTGGACCG 60.606 55.000 0.00 0.00 36.02 4.79
233 234 1.966451 GCCACTTGTCTTGGACCGG 60.966 63.158 0.00 0.00 36.02 5.28
234 235 1.966451 CCACTTGTCTTGGACCGGC 60.966 63.158 0.00 0.00 36.02 6.13
235 236 1.071471 CACTTGTCTTGGACCGGCT 59.929 57.895 0.00 0.00 0.00 5.52
236 237 1.071471 ACTTGTCTTGGACCGGCTG 59.929 57.895 0.00 0.00 0.00 4.85
237 238 1.371183 CTTGTCTTGGACCGGCTGA 59.629 57.895 0.00 0.00 0.00 4.26
238 239 0.036010 CTTGTCTTGGACCGGCTGAT 60.036 55.000 0.00 0.00 0.00 2.90
239 240 0.036388 TTGTCTTGGACCGGCTGATC 60.036 55.000 0.00 0.00 0.00 2.92
240 241 1.191489 TGTCTTGGACCGGCTGATCA 61.191 55.000 0.00 0.00 0.00 2.92
241 242 0.460987 GTCTTGGACCGGCTGATCAG 60.461 60.000 18.84 18.84 0.00 2.90
242 243 1.153289 CTTGGACCGGCTGATCAGG 60.153 63.158 23.89 11.24 36.01 3.86
243 244 1.612146 TTGGACCGGCTGATCAGGA 60.612 57.895 23.89 0.00 33.91 3.86
244 245 1.899437 TTGGACCGGCTGATCAGGAC 61.899 60.000 23.89 8.91 33.91 3.85
245 246 2.359169 GGACCGGCTGATCAGGACA 61.359 63.158 23.89 0.00 33.91 4.02
246 247 1.142748 GACCGGCTGATCAGGACAG 59.857 63.158 23.89 8.92 38.27 3.51
252 253 2.084844 CTGATCAGGACAGCGTTGC 58.915 57.895 15.38 0.00 0.00 4.17
253 254 1.364626 CTGATCAGGACAGCGTTGCC 61.365 60.000 15.38 1.69 0.00 4.52
254 255 1.078848 GATCAGGACAGCGTTGCCT 60.079 57.895 8.92 8.92 33.06 4.75
255 256 1.364626 GATCAGGACAGCGTTGCCTG 61.365 60.000 25.64 25.64 43.78 4.85
256 257 2.809861 ATCAGGACAGCGTTGCCTGG 62.810 60.000 28.46 17.26 43.19 4.45
257 258 4.335647 AGGACAGCGTTGCCTGGG 62.336 66.667 12.89 0.00 37.16 4.45
258 259 4.329545 GGACAGCGTTGCCTGGGA 62.330 66.667 0.00 0.00 37.16 4.37
259 260 2.281484 GACAGCGTTGCCTGGGAA 60.281 61.111 0.00 0.00 37.16 3.97
260 261 2.594592 ACAGCGTTGCCTGGGAAC 60.595 61.111 19.85 19.85 37.16 3.62
266 267 4.257654 TTGCCTGGGAACGCCGAA 62.258 61.111 0.00 0.00 33.83 4.30
269 270 4.016706 CCTGGGAACGCCGAACCT 62.017 66.667 0.00 0.00 33.83 3.50
270 271 2.032071 CTGGGAACGCCGAACCTT 59.968 61.111 0.00 0.00 33.83 3.50
271 272 2.281208 TGGGAACGCCGAACCTTG 60.281 61.111 0.00 0.00 33.83 3.61
272 273 2.031465 GGGAACGCCGAACCTTGA 59.969 61.111 0.00 0.00 33.83 3.02
273 274 1.598685 GGGAACGCCGAACCTTGAA 60.599 57.895 0.00 0.00 33.83 2.69
274 275 1.574702 GGGAACGCCGAACCTTGAAG 61.575 60.000 0.00 0.00 33.83 3.02
275 276 0.601841 GGAACGCCGAACCTTGAAGA 60.602 55.000 0.00 0.00 0.00 2.87
276 277 0.511653 GAACGCCGAACCTTGAAGAC 59.488 55.000 0.00 0.00 0.00 3.01
277 278 0.883370 AACGCCGAACCTTGAAGACC 60.883 55.000 0.00 0.00 0.00 3.85
278 279 2.380410 CGCCGAACCTTGAAGACCG 61.380 63.158 0.00 0.00 0.00 4.79
279 280 2.677979 GCCGAACCTTGAAGACCGC 61.678 63.158 0.00 0.00 0.00 5.68
280 281 2.380410 CCGAACCTTGAAGACCGCG 61.380 63.158 0.00 0.00 0.00 6.46
281 282 1.372499 CGAACCTTGAAGACCGCGA 60.372 57.895 8.23 0.00 0.00 5.87
282 283 1.615107 CGAACCTTGAAGACCGCGAC 61.615 60.000 8.23 0.40 0.00 5.19
283 284 1.615107 GAACCTTGAAGACCGCGACG 61.615 60.000 8.23 0.00 0.00 5.12
284 285 3.479269 CCTTGAAGACCGCGACGC 61.479 66.667 8.23 10.49 0.00 5.19
285 286 3.479269 CTTGAAGACCGCGACGCC 61.479 66.667 15.34 0.00 0.00 5.68
286 287 4.287781 TTGAAGACCGCGACGCCA 62.288 61.111 15.34 1.77 0.00 5.69
287 288 3.583276 TTGAAGACCGCGACGCCAT 62.583 57.895 15.34 1.52 0.00 4.40
288 289 2.813908 GAAGACCGCGACGCCATT 60.814 61.111 15.34 3.68 0.00 3.16
289 290 3.083600 GAAGACCGCGACGCCATTG 62.084 63.158 15.34 2.98 0.00 2.82
294 295 3.195002 CGCGACGCCATTGGTCAT 61.195 61.111 15.34 0.00 34.04 3.06
295 296 2.709475 GCGACGCCATTGGTCATC 59.291 61.111 9.14 0.00 34.04 2.92
296 297 2.823829 GCGACGCCATTGGTCATCC 61.824 63.158 9.14 0.00 34.04 3.51
297 298 1.449423 CGACGCCATTGGTCATCCA 60.449 57.895 4.26 0.00 42.66 3.41
298 299 1.705337 CGACGCCATTGGTCATCCAC 61.705 60.000 4.26 0.00 44.22 4.02
299 300 1.376609 GACGCCATTGGTCATCCACC 61.377 60.000 4.26 0.00 44.22 4.61
307 308 4.489771 GTCATCCACCGGCCAGGG 62.490 72.222 16.44 6.84 46.96 4.45
314 315 3.083997 ACCGGCCAGGGTGAGATC 61.084 66.667 16.44 0.00 46.96 2.75
315 316 2.765807 CCGGCCAGGGTGAGATCT 60.766 66.667 2.24 0.00 35.97 2.75
316 317 2.503061 CGGCCAGGGTGAGATCTG 59.497 66.667 0.00 0.00 0.00 2.90
317 318 2.060383 CGGCCAGGGTGAGATCTGA 61.060 63.158 0.00 0.00 33.11 3.27
318 319 1.617018 CGGCCAGGGTGAGATCTGAA 61.617 60.000 0.00 0.00 33.11 3.02
319 320 0.179936 GGCCAGGGTGAGATCTGAAG 59.820 60.000 0.00 0.00 33.11 3.02
320 321 0.463474 GCCAGGGTGAGATCTGAAGC 60.463 60.000 0.00 0.00 33.11 3.86
321 322 0.179936 CCAGGGTGAGATCTGAAGCC 59.820 60.000 13.18 13.18 33.11 4.35
322 323 0.907486 CAGGGTGAGATCTGAAGCCA 59.093 55.000 20.12 2.07 33.82 4.75
323 324 0.908198 AGGGTGAGATCTGAAGCCAC 59.092 55.000 20.12 12.66 33.82 5.01
324 325 0.908198 GGGTGAGATCTGAAGCCACT 59.092 55.000 15.31 0.00 0.00 4.00
325 326 1.406614 GGGTGAGATCTGAAGCCACTG 60.407 57.143 15.31 0.00 0.00 3.66
326 327 1.406614 GGTGAGATCTGAAGCCACTGG 60.407 57.143 0.00 0.00 0.00 4.00
327 328 1.277557 GTGAGATCTGAAGCCACTGGT 59.722 52.381 0.00 0.00 0.00 4.00
328 329 2.497675 GTGAGATCTGAAGCCACTGGTA 59.502 50.000 0.00 0.00 0.00 3.25
329 330 3.133721 GTGAGATCTGAAGCCACTGGTAT 59.866 47.826 0.00 0.00 0.00 2.73
330 331 3.133542 TGAGATCTGAAGCCACTGGTATG 59.866 47.826 0.00 0.00 0.00 2.39
331 332 3.110705 AGATCTGAAGCCACTGGTATGT 58.889 45.455 0.00 0.00 0.00 2.29
332 333 4.290093 AGATCTGAAGCCACTGGTATGTA 58.710 43.478 0.00 0.00 0.00 2.29
333 334 4.904251 AGATCTGAAGCCACTGGTATGTAT 59.096 41.667 0.00 0.00 0.00 2.29
334 335 5.367937 AGATCTGAAGCCACTGGTATGTATT 59.632 40.000 0.00 0.00 0.00 1.89
335 336 5.435686 TCTGAAGCCACTGGTATGTATTT 57.564 39.130 0.00 0.00 0.00 1.40
336 337 5.815581 TCTGAAGCCACTGGTATGTATTTT 58.184 37.500 0.00 0.00 0.00 1.82
337 338 6.245408 TCTGAAGCCACTGGTATGTATTTTT 58.755 36.000 0.00 0.00 0.00 1.94
338 339 7.398829 TCTGAAGCCACTGGTATGTATTTTTA 58.601 34.615 0.00 0.00 0.00 1.52
339 340 8.052748 TCTGAAGCCACTGGTATGTATTTTTAT 58.947 33.333 0.00 0.00 0.00 1.40
340 341 7.995289 TGAAGCCACTGGTATGTATTTTTATG 58.005 34.615 0.00 0.00 0.00 1.90
341 342 6.959639 AGCCACTGGTATGTATTTTTATGG 57.040 37.500 0.00 0.00 0.00 2.74
342 343 6.431722 AGCCACTGGTATGTATTTTTATGGT 58.568 36.000 0.00 0.00 0.00 3.55
343 344 6.321181 AGCCACTGGTATGTATTTTTATGGTG 59.679 38.462 0.00 0.00 0.00 4.17
344 345 6.460953 GCCACTGGTATGTATTTTTATGGTGG 60.461 42.308 0.00 0.00 41.25 4.61
345 346 6.605594 CCACTGGTATGTATTTTTATGGTGGT 59.394 38.462 0.00 0.00 35.86 4.16
346 347 7.416213 CCACTGGTATGTATTTTTATGGTGGTG 60.416 40.741 0.00 0.00 35.86 4.17
347 348 6.096282 ACTGGTATGTATTTTTATGGTGGTGC 59.904 38.462 0.00 0.00 0.00 5.01
348 349 6.191315 TGGTATGTATTTTTATGGTGGTGCT 58.809 36.000 0.00 0.00 0.00 4.40
349 350 6.096141 TGGTATGTATTTTTATGGTGGTGCTG 59.904 38.462 0.00 0.00 0.00 4.41
350 351 4.448537 TGTATTTTTATGGTGGTGCTGC 57.551 40.909 0.00 0.00 0.00 5.25
351 352 3.829026 TGTATTTTTATGGTGGTGCTGCA 59.171 39.130 0.00 0.00 0.00 4.41
352 353 4.465660 TGTATTTTTATGGTGGTGCTGCAT 59.534 37.500 5.27 0.00 0.00 3.96
353 354 3.316071 TTTTTATGGTGGTGCTGCATG 57.684 42.857 5.27 0.00 0.00 4.06
354 355 1.184431 TTTATGGTGGTGCTGCATGG 58.816 50.000 5.27 0.00 0.00 3.66
355 356 0.039472 TTATGGTGGTGCTGCATGGT 59.961 50.000 5.27 0.00 0.00 3.55
356 357 0.915364 TATGGTGGTGCTGCATGGTA 59.085 50.000 5.27 0.00 0.00 3.25
357 358 0.259647 ATGGTGGTGCTGCATGGTAT 59.740 50.000 5.27 0.00 0.00 2.73
358 359 0.680601 TGGTGGTGCTGCATGGTATG 60.681 55.000 5.27 0.00 0.00 2.39
359 360 1.386525 GGTGGTGCTGCATGGTATGG 61.387 60.000 5.27 0.00 0.00 2.74
360 361 1.076850 TGGTGCTGCATGGTATGGG 60.077 57.895 5.27 0.00 0.00 4.00
361 362 1.829533 GGTGCTGCATGGTATGGGG 60.830 63.158 5.27 0.00 0.00 4.96
362 363 2.123769 TGCTGCATGGTATGGGGC 60.124 61.111 0.00 0.00 0.00 5.80
363 364 2.123769 GCTGCATGGTATGGGGCA 60.124 61.111 0.00 0.00 34.66 5.36
364 365 4.169271 CTGCATGGTATGGGGCAG 57.831 61.111 0.00 0.00 46.47 4.85
365 366 2.123769 TGCATGGTATGGGGCAGC 60.124 61.111 0.00 0.00 0.00 5.25
366 367 3.289834 GCATGGTATGGGGCAGCG 61.290 66.667 0.00 0.00 0.00 5.18
367 368 2.510411 CATGGTATGGGGCAGCGA 59.490 61.111 0.00 0.00 0.00 4.93
368 369 1.073722 CATGGTATGGGGCAGCGAT 59.926 57.895 0.00 0.00 0.00 4.58
369 370 0.538057 CATGGTATGGGGCAGCGATT 60.538 55.000 0.00 0.00 0.00 3.34
370 371 1.064003 ATGGTATGGGGCAGCGATTA 58.936 50.000 0.00 0.00 0.00 1.75
371 372 1.064003 TGGTATGGGGCAGCGATTAT 58.936 50.000 0.00 0.00 0.00 1.28
372 373 1.423541 TGGTATGGGGCAGCGATTATT 59.576 47.619 0.00 0.00 0.00 1.40
373 374 2.158534 TGGTATGGGGCAGCGATTATTT 60.159 45.455 0.00 0.00 0.00 1.40
374 375 3.073209 TGGTATGGGGCAGCGATTATTTA 59.927 43.478 0.00 0.00 0.00 1.40
375 376 3.689649 GGTATGGGGCAGCGATTATTTAG 59.310 47.826 0.00 0.00 0.00 1.85
376 377 3.508845 ATGGGGCAGCGATTATTTAGT 57.491 42.857 0.00 0.00 0.00 2.24
377 378 2.571212 TGGGGCAGCGATTATTTAGTG 58.429 47.619 0.00 0.00 0.00 2.74
378 379 1.266989 GGGGCAGCGATTATTTAGTGC 59.733 52.381 0.00 0.00 0.00 4.40
379 380 1.069906 GGGCAGCGATTATTTAGTGCG 60.070 52.381 0.00 0.00 0.00 5.34
384 385 3.585748 GCGATTATTTAGTGCGCAAGA 57.414 42.857 14.00 0.00 46.19 3.02
385 386 3.935450 GCGATTATTTAGTGCGCAAGAA 58.065 40.909 14.00 6.36 46.19 2.52
392 393 2.558313 GTGCGCAAGAACTGAGGC 59.442 61.111 14.00 0.00 44.89 4.70
393 394 1.963338 GTGCGCAAGAACTGAGGCT 60.963 57.895 14.00 0.00 44.89 4.58
394 395 1.227943 TGCGCAAGAACTGAGGCTT 60.228 52.632 8.16 0.00 43.02 4.35
395 396 0.819259 TGCGCAAGAACTGAGGCTTT 60.819 50.000 8.16 0.00 43.02 3.51
396 397 0.312102 GCGCAAGAACTGAGGCTTTT 59.688 50.000 0.30 0.00 43.02 2.27
397 398 1.927710 GCGCAAGAACTGAGGCTTTTG 60.928 52.381 0.30 0.00 43.02 2.44
398 399 1.334869 CGCAAGAACTGAGGCTTTTGT 59.665 47.619 0.00 0.00 43.02 2.83
399 400 2.223572 CGCAAGAACTGAGGCTTTTGTT 60.224 45.455 0.00 0.00 43.02 2.83
400 401 3.734902 CGCAAGAACTGAGGCTTTTGTTT 60.735 43.478 0.00 0.00 43.02 2.83
401 402 4.183865 GCAAGAACTGAGGCTTTTGTTTT 58.816 39.130 0.00 0.00 0.00 2.43
402 403 4.631377 GCAAGAACTGAGGCTTTTGTTTTT 59.369 37.500 0.00 0.00 0.00 1.94
420 421 2.451693 TTTTTCGCTCGACGGGATG 58.548 52.632 0.00 0.00 43.89 3.51
421 422 1.632046 TTTTTCGCTCGACGGGATGC 61.632 55.000 0.00 0.00 43.89 3.91
422 423 2.501223 TTTTCGCTCGACGGGATGCT 62.501 55.000 0.00 0.00 43.89 3.79
423 424 2.501223 TTTCGCTCGACGGGATGCTT 62.501 55.000 0.00 0.00 43.89 3.91
424 425 2.501223 TTCGCTCGACGGGATGCTTT 62.501 55.000 0.00 0.00 43.89 3.51
425 426 1.226859 CGCTCGACGGGATGCTTTA 60.227 57.895 0.00 0.00 38.44 1.85
426 427 1.209275 CGCTCGACGGGATGCTTTAG 61.209 60.000 0.00 0.00 38.44 1.85
427 428 0.102481 GCTCGACGGGATGCTTTAGA 59.898 55.000 0.00 0.00 0.00 2.10
428 429 1.866063 GCTCGACGGGATGCTTTAGAG 60.866 57.143 0.00 0.00 0.00 2.43
429 430 1.676529 CTCGACGGGATGCTTTAGAGA 59.323 52.381 0.00 0.00 0.00 3.10
430 431 2.294791 CTCGACGGGATGCTTTAGAGAT 59.705 50.000 0.00 0.00 0.00 2.75
431 432 2.034685 TCGACGGGATGCTTTAGAGATG 59.965 50.000 0.00 0.00 0.00 2.90
432 433 2.223829 CGACGGGATGCTTTAGAGATGT 60.224 50.000 0.00 0.00 0.00 3.06
433 434 3.385577 GACGGGATGCTTTAGAGATGTC 58.614 50.000 0.00 0.00 0.00 3.06
434 435 2.766263 ACGGGATGCTTTAGAGATGTCA 59.234 45.455 0.00 0.00 0.00 3.58
435 436 3.126831 CGGGATGCTTTAGAGATGTCAC 58.873 50.000 0.00 0.00 0.00 3.67
436 437 3.126831 GGGATGCTTTAGAGATGTCACG 58.873 50.000 0.00 0.00 0.00 4.35
437 438 3.430929 GGGATGCTTTAGAGATGTCACGT 60.431 47.826 0.00 0.00 0.00 4.49
438 439 3.553511 GGATGCTTTAGAGATGTCACGTG 59.446 47.826 9.94 9.94 0.00 4.49
439 440 2.337583 TGCTTTAGAGATGTCACGTGC 58.662 47.619 11.67 6.86 0.00 5.34
440 441 2.029020 TGCTTTAGAGATGTCACGTGCT 60.029 45.455 11.67 1.14 0.00 4.40
441 442 2.346847 GCTTTAGAGATGTCACGTGCTG 59.653 50.000 11.67 0.00 0.00 4.41
442 443 3.579709 CTTTAGAGATGTCACGTGCTGT 58.420 45.455 11.67 3.12 0.00 4.40
450 451 4.297891 CACGTGCTGTGTGCCACG 62.298 66.667 0.82 11.08 43.88 4.94
461 462 2.112928 TGCCACGCACAGGTTGAT 59.887 55.556 0.00 0.00 31.71 2.57
462 463 2.260154 TGCCACGCACAGGTTGATG 61.260 57.895 0.00 0.00 31.71 3.07
463 464 2.562912 CCACGCACAGGTTGATGC 59.437 61.111 0.00 0.00 38.52 3.91
464 465 1.968017 CCACGCACAGGTTGATGCT 60.968 57.895 0.00 0.00 39.79 3.79
465 466 0.673333 CCACGCACAGGTTGATGCTA 60.673 55.000 0.00 0.00 39.79 3.49
466 467 1.372582 CACGCACAGGTTGATGCTAT 58.627 50.000 0.00 0.00 39.79 2.97
467 468 1.063027 CACGCACAGGTTGATGCTATG 59.937 52.381 0.00 0.00 39.79 2.23
468 469 0.028505 CGCACAGGTTGATGCTATGC 59.971 55.000 0.00 0.00 39.79 3.14
469 470 1.386533 GCACAGGTTGATGCTATGCT 58.613 50.000 0.00 0.00 38.84 3.79
470 471 1.332997 GCACAGGTTGATGCTATGCTC 59.667 52.381 0.00 0.00 38.84 4.26
471 472 2.915349 CACAGGTTGATGCTATGCTCT 58.085 47.619 0.00 0.00 0.00 4.09
472 473 3.742327 GCACAGGTTGATGCTATGCTCTA 60.742 47.826 0.00 0.00 38.84 2.43
473 474 4.445453 CACAGGTTGATGCTATGCTCTAA 58.555 43.478 0.00 0.00 0.00 2.10
474 475 5.061853 CACAGGTTGATGCTATGCTCTAAT 58.938 41.667 0.00 0.00 0.00 1.73
475 476 5.530171 CACAGGTTGATGCTATGCTCTAATT 59.470 40.000 0.00 0.00 0.00 1.40
476 477 6.707608 CACAGGTTGATGCTATGCTCTAATTA 59.292 38.462 0.00 0.00 0.00 1.40
477 478 6.933521 ACAGGTTGATGCTATGCTCTAATTAG 59.066 38.462 6.11 6.11 0.00 1.73
478 479 6.933521 CAGGTTGATGCTATGCTCTAATTAGT 59.066 38.462 12.19 0.00 0.00 2.24
479 480 6.933521 AGGTTGATGCTATGCTCTAATTAGTG 59.066 38.462 12.19 10.87 0.00 2.74
480 481 6.708054 GGTTGATGCTATGCTCTAATTAGTGT 59.292 38.462 12.19 0.00 0.00 3.55
481 482 7.227512 GGTTGATGCTATGCTCTAATTAGTGTT 59.772 37.037 12.19 5.21 0.00 3.32
482 483 7.953158 TGATGCTATGCTCTAATTAGTGTTC 57.047 36.000 12.19 0.00 0.00 3.18
483 484 7.500141 TGATGCTATGCTCTAATTAGTGTTCA 58.500 34.615 12.19 5.12 0.00 3.18
484 485 8.152898 TGATGCTATGCTCTAATTAGTGTTCAT 58.847 33.333 12.19 11.16 0.00 2.57
485 486 9.645059 GATGCTATGCTCTAATTAGTGTTCATA 57.355 33.333 12.19 11.60 0.00 2.15
486 487 9.650539 ATGCTATGCTCTAATTAGTGTTCATAG 57.349 33.333 22.29 22.29 36.74 2.23
487 488 8.090831 TGCTATGCTCTAATTAGTGTTCATAGG 58.909 37.037 24.69 15.78 35.18 2.57
488 489 8.307483 GCTATGCTCTAATTAGTGTTCATAGGA 58.693 37.037 24.69 13.62 35.18 2.94
491 492 6.931281 TGCTCTAATTAGTGTTCATAGGATGC 59.069 38.462 12.19 0.00 0.00 3.91
492 493 7.158021 GCTCTAATTAGTGTTCATAGGATGCT 58.842 38.462 12.19 0.00 0.00 3.79
493 494 8.307483 GCTCTAATTAGTGTTCATAGGATGCTA 58.693 37.037 12.19 0.00 0.00 3.49
496 497 7.678947 AATTAGTGTTCATAGGATGCTATGC 57.321 36.000 25.02 14.83 37.26 3.14
497 498 4.970860 AGTGTTCATAGGATGCTATGCT 57.029 40.909 25.02 15.31 37.26 3.79
498 499 5.301835 AGTGTTCATAGGATGCTATGCTT 57.698 39.130 25.02 8.92 37.26 3.91
499 500 5.688807 AGTGTTCATAGGATGCTATGCTTT 58.311 37.500 25.02 9.21 37.26 3.51
500 501 6.830912 AGTGTTCATAGGATGCTATGCTTTA 58.169 36.000 25.02 8.92 37.26 1.85
501 502 6.708054 AGTGTTCATAGGATGCTATGCTTTAC 59.292 38.462 25.02 19.62 37.26 2.01
502 503 6.708054 GTGTTCATAGGATGCTATGCTTTACT 59.292 38.462 25.02 0.00 37.26 2.24
503 504 6.707608 TGTTCATAGGATGCTATGCTTTACTG 59.292 38.462 25.02 5.30 37.26 2.74
504 505 5.798132 TCATAGGATGCTATGCTTTACTGG 58.202 41.667 25.02 3.25 37.26 4.00
505 506 2.856222 AGGATGCTATGCTTTACTGGC 58.144 47.619 0.00 0.00 0.00 4.85
506 507 2.173356 AGGATGCTATGCTTTACTGGCA 59.827 45.455 0.00 0.00 44.05 4.92
507 508 2.551459 GGATGCTATGCTTTACTGGCAG 59.449 50.000 14.16 14.16 43.15 4.85
508 509 2.787473 TGCTATGCTTTACTGGCAGT 57.213 45.000 25.34 25.34 43.15 4.40
509 510 2.358957 TGCTATGCTTTACTGGCAGTG 58.641 47.619 29.65 14.46 43.15 3.66
510 511 2.027285 TGCTATGCTTTACTGGCAGTGA 60.027 45.455 29.65 19.67 43.15 3.41
511 512 3.209410 GCTATGCTTTACTGGCAGTGAT 58.791 45.455 29.65 14.80 43.15 3.06
512 513 3.629398 GCTATGCTTTACTGGCAGTGATT 59.371 43.478 29.65 5.42 43.15 2.57
513 514 4.816385 GCTATGCTTTACTGGCAGTGATTA 59.184 41.667 29.65 7.11 43.15 1.75
514 515 5.049818 GCTATGCTTTACTGGCAGTGATTAG 60.050 44.000 29.65 17.21 43.15 1.73
515 516 4.286297 TGCTTTACTGGCAGTGATTAGT 57.714 40.909 29.65 4.35 34.56 2.24
516 517 4.651778 TGCTTTACTGGCAGTGATTAGTT 58.348 39.130 29.65 2.60 34.56 2.24
517 518 5.070001 TGCTTTACTGGCAGTGATTAGTTT 58.930 37.500 29.65 1.81 34.56 2.66
518 519 6.234920 TGCTTTACTGGCAGTGATTAGTTTA 58.765 36.000 29.65 3.42 34.56 2.01
519 520 6.712998 TGCTTTACTGGCAGTGATTAGTTTAA 59.287 34.615 29.65 9.90 34.56 1.52
520 521 7.393234 TGCTTTACTGGCAGTGATTAGTTTAAT 59.607 33.333 29.65 0.24 34.56 1.40
521 522 8.244113 GCTTTACTGGCAGTGATTAGTTTAATT 58.756 33.333 29.65 0.00 0.00 1.40
524 525 7.321745 ACTGGCAGTGATTAGTTTAATTAGC 57.678 36.000 21.37 0.00 0.00 3.09
525 526 7.112779 ACTGGCAGTGATTAGTTTAATTAGCT 58.887 34.615 21.37 0.00 0.00 3.32
526 527 7.611855 ACTGGCAGTGATTAGTTTAATTAGCTT 59.388 33.333 21.37 0.00 0.00 3.74
527 528 7.985476 TGGCAGTGATTAGTTTAATTAGCTTC 58.015 34.615 0.00 0.00 0.00 3.86
528 529 7.609918 TGGCAGTGATTAGTTTAATTAGCTTCA 59.390 33.333 0.00 0.00 0.00 3.02
529 530 7.910683 GGCAGTGATTAGTTTAATTAGCTTCAC 59.089 37.037 0.00 11.79 0.00 3.18
530 531 8.669243 GCAGTGATTAGTTTAATTAGCTTCACT 58.331 33.333 14.32 14.32 30.55 3.41
531 532 9.979270 CAGTGATTAGTTTAATTAGCTTCACTG 57.021 33.333 22.47 22.47 37.27 3.66
532 533 9.726438 AGTGATTAGTTTAATTAGCTTCACTGT 57.274 29.630 16.90 4.43 29.85 3.55
533 534 9.760660 GTGATTAGTTTAATTAGCTTCACTGTG 57.239 33.333 0.17 0.17 0.00 3.66
534 535 8.946085 TGATTAGTTTAATTAGCTTCACTGTGG 58.054 33.333 8.11 0.00 0.00 4.17
535 536 5.629079 AGTTTAATTAGCTTCACTGTGGC 57.371 39.130 8.11 4.42 0.00 5.01
536 537 5.070001 AGTTTAATTAGCTTCACTGTGGCA 58.930 37.500 8.11 0.00 0.00 4.92
537 538 5.534654 AGTTTAATTAGCTTCACTGTGGCAA 59.465 36.000 8.11 2.91 0.00 4.52
538 539 5.627499 TTAATTAGCTTCACTGTGGCAAG 57.373 39.130 8.11 6.43 0.00 4.01
539 540 2.928801 TTAGCTTCACTGTGGCAAGA 57.071 45.000 8.11 0.00 0.00 3.02
540 541 2.462456 TAGCTTCACTGTGGCAAGAG 57.538 50.000 8.11 0.00 0.00 2.85
541 542 0.888285 AGCTTCACTGTGGCAAGAGC 60.888 55.000 8.11 9.72 41.10 4.09
542 543 0.888285 GCTTCACTGTGGCAAGAGCT 60.888 55.000 8.11 0.00 41.70 4.09
543 544 0.873054 CTTCACTGTGGCAAGAGCTG 59.127 55.000 8.11 0.00 41.70 4.24
544 545 0.469494 TTCACTGTGGCAAGAGCTGA 59.531 50.000 8.11 0.00 41.70 4.26
545 546 0.250038 TCACTGTGGCAAGAGCTGAC 60.250 55.000 8.11 0.00 41.70 3.51
546 547 1.301244 ACTGTGGCAAGAGCTGACG 60.301 57.895 0.00 0.00 41.70 4.35
547 548 2.666190 TGTGGCAAGAGCTGACGC 60.666 61.111 0.00 0.00 44.60 5.19
548 549 3.426568 GTGGCAAGAGCTGACGCC 61.427 66.667 9.45 9.45 45.11 5.68
550 551 2.437359 GGCAAGAGCTGACGCCAT 60.437 61.111 11.13 0.00 44.25 4.40
551 552 2.042831 GGCAAGAGCTGACGCCATT 61.043 57.895 11.13 0.00 44.25 3.16
552 553 1.589716 GGCAAGAGCTGACGCCATTT 61.590 55.000 11.13 0.00 44.25 2.32
553 554 0.455633 GCAAGAGCTGACGCCATTTG 60.456 55.000 0.00 0.00 37.91 2.32
554 555 0.455633 CAAGAGCTGACGCCATTTGC 60.456 55.000 0.00 0.00 36.60 3.68
569 570 5.147162 GCCATTTGCGTATTATAGAGTTGC 58.853 41.667 0.00 0.00 0.00 4.17
570 571 5.374080 CCATTTGCGTATTATAGAGTTGCG 58.626 41.667 0.00 0.00 0.00 4.85
571 572 5.176774 CCATTTGCGTATTATAGAGTTGCGA 59.823 40.000 0.00 0.00 0.00 5.10
572 573 6.128553 CCATTTGCGTATTATAGAGTTGCGAT 60.129 38.462 0.00 0.00 0.00 4.58
573 574 6.838198 TTTGCGTATTATAGAGTTGCGATT 57.162 33.333 0.00 0.00 0.00 3.34
574 575 7.933728 TTTGCGTATTATAGAGTTGCGATTA 57.066 32.000 0.00 0.00 0.00 1.75
575 576 7.562640 TTGCGTATTATAGAGTTGCGATTAG 57.437 36.000 0.00 0.00 0.00 1.73
576 577 6.675026 TGCGTATTATAGAGTTGCGATTAGT 58.325 36.000 0.00 0.00 0.00 2.24
577 578 7.809665 TGCGTATTATAGAGTTGCGATTAGTA 58.190 34.615 0.00 0.00 0.00 1.82
578 579 7.747799 TGCGTATTATAGAGTTGCGATTAGTAC 59.252 37.037 0.00 0.00 0.00 2.73
579 580 7.961827 GCGTATTATAGAGTTGCGATTAGTACT 59.038 37.037 0.00 0.00 0.00 2.73
580 581 9.263626 CGTATTATAGAGTTGCGATTAGTACTG 57.736 37.037 5.39 0.00 0.00 2.74
581 582 9.063739 GTATTATAGAGTTGCGATTAGTACTGC 57.936 37.037 5.39 0.18 0.00 4.40
582 583 5.776173 ATAGAGTTGCGATTAGTACTGCT 57.224 39.130 5.39 0.00 0.00 4.24
583 584 4.035278 AGAGTTGCGATTAGTACTGCTC 57.965 45.455 5.39 0.99 0.00 4.26
584 585 3.117046 GAGTTGCGATTAGTACTGCTCC 58.883 50.000 5.39 0.00 0.00 4.70
585 586 2.761208 AGTTGCGATTAGTACTGCTCCT 59.239 45.455 5.39 0.00 0.00 3.69
586 587 3.195825 AGTTGCGATTAGTACTGCTCCTT 59.804 43.478 5.39 0.00 0.00 3.36
587 588 3.887621 TGCGATTAGTACTGCTCCTTT 57.112 42.857 5.39 0.00 0.00 3.11
588 589 4.202245 TGCGATTAGTACTGCTCCTTTT 57.798 40.909 5.39 0.00 0.00 2.27
589 590 4.181578 TGCGATTAGTACTGCTCCTTTTC 58.818 43.478 5.39 0.00 0.00 2.29
590 591 3.556365 GCGATTAGTACTGCTCCTTTTCC 59.444 47.826 5.39 0.00 0.00 3.13
591 592 4.680975 GCGATTAGTACTGCTCCTTTTCCT 60.681 45.833 5.39 0.00 0.00 3.36
592 593 5.044558 CGATTAGTACTGCTCCTTTTCCTC 58.955 45.833 5.39 0.00 0.00 3.71
593 594 5.163499 CGATTAGTACTGCTCCTTTTCCTCT 60.163 44.000 5.39 0.00 0.00 3.69
594 595 6.628398 CGATTAGTACTGCTCCTTTTCCTCTT 60.628 42.308 5.39 0.00 0.00 2.85
595 596 4.984146 AGTACTGCTCCTTTTCCTCTTT 57.016 40.909 0.00 0.00 0.00 2.52
606 607 4.460731 CCTTTTCCTCTTTTCATCAGACCC 59.539 45.833 0.00 0.00 0.00 4.46
609 610 1.279271 CCTCTTTTCATCAGACCCGGT 59.721 52.381 0.00 0.00 0.00 5.28
616 617 1.608336 ATCAGACCCGGTCGTTGGA 60.608 57.895 12.04 8.94 37.67 3.53
618 619 2.995574 AGACCCGGTCGTTGGAGG 60.996 66.667 12.04 0.00 37.67 4.30
624 625 0.102481 CCGGTCGTTGGAGGTATCAG 59.898 60.000 0.00 0.00 0.00 2.90
665 666 4.794616 TCTATATATCTTCCCTCCCTCCGT 59.205 45.833 0.00 0.00 0.00 4.69
689 690 2.560542 GTTAATGCACCACATTCCCACA 59.439 45.455 0.00 0.00 46.28 4.17
694 695 1.819305 GCACCACATTCCCACACTCTT 60.819 52.381 0.00 0.00 0.00 2.85
696 697 3.750371 CACCACATTCCCACACTCTTTA 58.250 45.455 0.00 0.00 0.00 1.85
712 719 2.028112 TCTTTACTCGGCTGAGCAACAT 60.028 45.455 22.80 5.12 46.69 2.71
718 725 1.705337 CGGCTGAGCAACATAACCCG 61.705 60.000 6.82 0.00 0.00 5.28
746 753 0.972983 CTCATCCAGACACCCCTCGT 60.973 60.000 0.00 0.00 0.00 4.18
849 857 6.209192 TGCTTTTTATTCATTCTTCTCCTGCA 59.791 34.615 0.00 0.00 0.00 4.41
865 873 1.153568 GCACCTGCTCATACTCGCA 60.154 57.895 0.00 0.00 38.21 5.10
870 878 3.055144 TGCTCATACTCGCAAGCAG 57.945 52.632 0.00 0.00 39.69 4.24
871 879 0.247460 TGCTCATACTCGCAAGCAGT 59.753 50.000 0.00 0.00 39.69 4.40
887 898 9.814732 TCGCAAGCAGTGACTTACAAGTCTAAT 62.815 40.741 19.83 6.28 46.38 1.73
963 979 6.968904 CACCCTAATGAATTTCTGTTGATTCG 59.031 38.462 0.00 0.00 35.53 3.34
966 982 6.968904 CCTAATGAATTTCTGTTGATTCGTGG 59.031 38.462 0.00 0.00 35.53 4.94
967 983 5.964958 ATGAATTTCTGTTGATTCGTGGT 57.035 34.783 0.00 0.00 35.53 4.16
1182 1215 2.093973 CAGCTACAAGAAGGTCGATGGT 60.094 50.000 0.00 0.00 0.00 3.55
1196 1229 3.965258 TGGTCCGGCCATGCAAGT 61.965 61.111 12.86 0.00 43.61 3.16
1203 1236 1.077501 GGCCATGCAAGTGCTCCTA 60.078 57.895 0.00 0.00 42.66 2.94
1282 1315 0.035036 CCGCATCCATGATCAGCTCT 59.965 55.000 0.09 0.00 0.00 4.09
1553 1671 1.097547 GTATGCATGCCCAAGCTCGT 61.098 55.000 16.68 0.00 40.80 4.18
1565 1683 2.875933 CCAAGCTCGTTAAACTTGTCCA 59.124 45.455 0.00 0.00 39.30 4.02
1569 1687 4.385825 AGCTCGTTAAACTTGTCCATTGA 58.614 39.130 0.00 0.00 0.00 2.57
1606 1727 4.840271 TGCTCATGATGATTGTTCTGTCT 58.160 39.130 0.00 0.00 0.00 3.41
1640 1779 0.383949 GGTGCGCCACAAAGAGAAAA 59.616 50.000 12.58 0.00 35.86 2.29
1793 3015 3.231818 CCCAGAGACGTCCCATTACTAT 58.768 50.000 13.01 0.00 0.00 2.12
1853 3075 4.573607 CCTTATCATGGATGCCATCATACG 59.426 45.833 7.06 0.00 43.15 3.06
2108 3330 4.219288 GGTTGAGGAGCTGATTGAACAAAT 59.781 41.667 0.00 0.00 0.00 2.32
2161 3383 6.174720 TGGATGATATGTGGGAGTTTAGTC 57.825 41.667 0.00 0.00 0.00 2.59
2259 3481 9.373603 ACAACTAGGTTTCCAAAAATAACAAAC 57.626 29.630 0.00 0.00 0.00 2.93
2320 3545 8.616942 GGTTAGAATCTGAAGAATTTAGGAAGC 58.383 37.037 0.00 0.00 31.77 3.86
2443 3669 4.099266 TCTTGCTGCAAAAACAGTTGGTAT 59.901 37.500 16.74 0.00 39.96 2.73
2561 3787 5.123820 TGCATTGAAGCTTAGTTATGACCAC 59.876 40.000 0.00 0.00 34.99 4.16
2630 3856 5.422012 TCCTGAAGATCACAAGTATAGTGCA 59.578 40.000 0.00 0.00 36.93 4.57
2648 3874 3.756434 GTGCAACCCAGCTAATCAACTTA 59.244 43.478 0.00 0.00 34.99 2.24
2771 3997 0.544595 AGGAGAGTGGTGGTGGGTAC 60.545 60.000 0.00 0.00 0.00 3.34
2997 4232 4.577283 AGGTTAAACAGTTGCATACGTTGT 59.423 37.500 0.00 0.00 0.00 3.32
3130 4365 9.126151 TGAGTCCATATTACACAACTTTTCAAA 57.874 29.630 0.00 0.00 0.00 2.69
3182 4420 3.769844 GGACAAAGTGTGAGAGGGAGATA 59.230 47.826 0.00 0.00 0.00 1.98
3312 4550 4.463539 TGAGTCGGTTTTATACACCAGCTA 59.536 41.667 0.00 0.00 33.36 3.32
3350 4588 8.106462 TCTGATATTGTCAATGTGGGAAAACTA 58.894 33.333 8.39 0.00 36.14 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.892130 AGTCCATTCGAAATATCTAAAAAGACT 57.108 29.630 0.00 0.00 0.00 3.24
17 18 9.878667 TGTTGTAGTCCATTCGAAATATCTAAA 57.121 29.630 0.00 0.00 0.00 1.85
20 21 9.477484 GTATGTTGTAGTCCATTCGAAATATCT 57.523 33.333 0.00 1.87 0.00 1.98
21 22 8.425491 CGTATGTTGTAGTCCATTCGAAATATC 58.575 37.037 0.00 0.00 34.90 1.63
22 23 7.384115 CCGTATGTTGTAGTCCATTCGAAATAT 59.616 37.037 0.00 0.00 34.90 1.28
23 24 6.698329 CCGTATGTTGTAGTCCATTCGAAATA 59.302 38.462 0.00 0.00 34.90 1.40
24 25 5.522460 CCGTATGTTGTAGTCCATTCGAAAT 59.478 40.000 0.00 0.00 34.90 2.17
25 26 4.865925 CCGTATGTTGTAGTCCATTCGAAA 59.134 41.667 0.00 0.00 34.90 3.46
26 27 4.158209 TCCGTATGTTGTAGTCCATTCGAA 59.842 41.667 0.00 0.00 34.90 3.71
27 28 3.695556 TCCGTATGTTGTAGTCCATTCGA 59.304 43.478 0.00 0.00 34.90 3.71
28 29 4.036567 TCCGTATGTTGTAGTCCATTCG 57.963 45.455 0.00 0.00 33.40 3.34
29 30 5.357257 ACATCCGTATGTTGTAGTCCATTC 58.643 41.667 0.00 0.00 44.07 2.67
30 31 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
31 32 6.665992 ATACATCCGTATGTTGTAGTCCAT 57.334 37.500 0.00 0.00 44.07 3.41
32 33 7.770366 ATATACATCCGTATGTTGTAGTCCA 57.230 36.000 0.00 0.00 44.07 4.02
33 34 9.170734 TCTATATACATCCGTATGTTGTAGTCC 57.829 37.037 0.00 0.00 44.07 3.85
34 35 9.985318 GTCTATATACATCCGTATGTTGTAGTC 57.015 37.037 0.00 0.00 44.07 2.59
35 36 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
66 67 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
67 68 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
68 69 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
69 70 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
70 71 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
71 72 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
72 73 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
73 74 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
74 75 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
75 76 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
76 77 5.525378 AGATACGGAGCAAAATGAGTGAATC 59.475 40.000 0.00 0.00 0.00 2.52
77 78 5.431765 AGATACGGAGCAAAATGAGTGAAT 58.568 37.500 0.00 0.00 0.00 2.57
78 79 4.832248 AGATACGGAGCAAAATGAGTGAA 58.168 39.130 0.00 0.00 0.00 3.18
79 80 4.471904 AGATACGGAGCAAAATGAGTGA 57.528 40.909 0.00 0.00 0.00 3.41
80 81 5.352284 ACTAGATACGGAGCAAAATGAGTG 58.648 41.667 0.00 0.00 0.00 3.51
81 82 5.127194 TGACTAGATACGGAGCAAAATGAGT 59.873 40.000 0.00 0.00 0.00 3.41
82 83 5.460419 GTGACTAGATACGGAGCAAAATGAG 59.540 44.000 0.00 0.00 0.00 2.90
83 84 5.127194 AGTGACTAGATACGGAGCAAAATGA 59.873 40.000 0.00 0.00 0.00 2.57
84 85 5.352284 AGTGACTAGATACGGAGCAAAATG 58.648 41.667 0.00 0.00 0.00 2.32
85 86 5.599999 AGTGACTAGATACGGAGCAAAAT 57.400 39.130 0.00 0.00 0.00 1.82
86 87 5.168569 CAAGTGACTAGATACGGAGCAAAA 58.831 41.667 0.00 0.00 0.00 2.44
87 88 4.219944 ACAAGTGACTAGATACGGAGCAAA 59.780 41.667 0.00 0.00 0.00 3.68
88 89 3.762288 ACAAGTGACTAGATACGGAGCAA 59.238 43.478 0.00 0.00 0.00 3.91
89 90 3.353557 ACAAGTGACTAGATACGGAGCA 58.646 45.455 0.00 0.00 0.00 4.26
90 91 4.106197 CAACAAGTGACTAGATACGGAGC 58.894 47.826 0.00 0.00 0.00 4.70
91 92 4.398358 TCCAACAAGTGACTAGATACGGAG 59.602 45.833 0.00 0.00 0.00 4.63
92 93 4.338012 TCCAACAAGTGACTAGATACGGA 58.662 43.478 0.00 0.00 0.00 4.69
93 94 4.713824 TCCAACAAGTGACTAGATACGG 57.286 45.455 0.00 0.00 0.00 4.02
94 95 8.353684 AGATATTCCAACAAGTGACTAGATACG 58.646 37.037 0.00 0.00 0.00 3.06
101 102 9.793259 TCTTTTTAGATATTCCAACAAGTGACT 57.207 29.630 0.00 0.00 0.00 3.41
102 103 9.827411 GTCTTTTTAGATATTCCAACAAGTGAC 57.173 33.333 0.00 0.00 0.00 3.67
103 104 9.793259 AGTCTTTTTAGATATTCCAACAAGTGA 57.207 29.630 0.00 0.00 0.00 3.41
121 122 8.537858 ACGTACTTCCTCCATATAAGTCTTTTT 58.462 33.333 0.00 0.00 35.23 1.94
122 123 7.980099 CACGTACTTCCTCCATATAAGTCTTTT 59.020 37.037 0.00 0.00 35.23 2.27
123 124 7.123847 ACACGTACTTCCTCCATATAAGTCTTT 59.876 37.037 0.00 0.00 35.23 2.52
124 125 6.606395 ACACGTACTTCCTCCATATAAGTCTT 59.394 38.462 0.00 0.00 35.23 3.01
125 126 6.127793 ACACGTACTTCCTCCATATAAGTCT 58.872 40.000 0.00 0.00 35.23 3.24
126 127 6.388435 ACACGTACTTCCTCCATATAAGTC 57.612 41.667 0.00 0.00 35.23 3.01
127 128 7.886629 TTACACGTACTTCCTCCATATAAGT 57.113 36.000 0.00 0.00 37.27 2.24
131 132 9.924650 GAATATTTACACGTACTTCCTCCATAT 57.075 33.333 0.00 0.00 0.00 1.78
132 133 8.362639 GGAATATTTACACGTACTTCCTCCATA 58.637 37.037 0.00 0.00 0.00 2.74
133 134 7.147620 TGGAATATTTACACGTACTTCCTCCAT 60.148 37.037 0.00 0.00 33.46 3.41
134 135 6.154877 TGGAATATTTACACGTACTTCCTCCA 59.845 38.462 0.00 0.00 33.46 3.86
135 136 6.576185 TGGAATATTTACACGTACTTCCTCC 58.424 40.000 0.00 0.00 33.46 4.30
136 137 8.658499 ATTGGAATATTTACACGTACTTCCTC 57.342 34.615 0.00 0.00 33.46 3.71
137 138 9.538508 GTATTGGAATATTTACACGTACTTCCT 57.461 33.333 0.00 0.00 33.46 3.36
138 139 9.316730 TGTATTGGAATATTTACACGTACTTCC 57.683 33.333 0.00 0.00 33.02 3.46
169 170 9.221933 CGAGGTAGAGAGATTGTTATATACAGT 57.778 37.037 0.00 0.00 38.19 3.55
170 171 8.178964 GCGAGGTAGAGAGATTGTTATATACAG 58.821 40.741 0.00 0.00 38.19 2.74
171 172 7.120873 GGCGAGGTAGAGAGATTGTTATATACA 59.879 40.741 0.00 0.00 34.12 2.29
172 173 7.120873 TGGCGAGGTAGAGAGATTGTTATATAC 59.879 40.741 0.00 0.00 0.00 1.47
173 174 7.173032 TGGCGAGGTAGAGAGATTGTTATATA 58.827 38.462 0.00 0.00 0.00 0.86
174 175 6.010850 TGGCGAGGTAGAGAGATTGTTATAT 58.989 40.000 0.00 0.00 0.00 0.86
175 176 5.382616 TGGCGAGGTAGAGAGATTGTTATA 58.617 41.667 0.00 0.00 0.00 0.98
176 177 4.215908 TGGCGAGGTAGAGAGATTGTTAT 58.784 43.478 0.00 0.00 0.00 1.89
177 178 3.628008 TGGCGAGGTAGAGAGATTGTTA 58.372 45.455 0.00 0.00 0.00 2.41
178 179 2.457598 TGGCGAGGTAGAGAGATTGTT 58.542 47.619 0.00 0.00 0.00 2.83
179 180 2.145397 TGGCGAGGTAGAGAGATTGT 57.855 50.000 0.00 0.00 0.00 2.71
180 181 3.190874 GTTTGGCGAGGTAGAGAGATTG 58.809 50.000 0.00 0.00 0.00 2.67
181 182 2.168728 GGTTTGGCGAGGTAGAGAGATT 59.831 50.000 0.00 0.00 0.00 2.40
182 183 1.757699 GGTTTGGCGAGGTAGAGAGAT 59.242 52.381 0.00 0.00 0.00 2.75
183 184 1.183549 GGTTTGGCGAGGTAGAGAGA 58.816 55.000 0.00 0.00 0.00 3.10
184 185 1.134965 CAGGTTTGGCGAGGTAGAGAG 60.135 57.143 0.00 0.00 0.00 3.20
185 186 0.895530 CAGGTTTGGCGAGGTAGAGA 59.104 55.000 0.00 0.00 0.00 3.10
186 187 0.741221 GCAGGTTTGGCGAGGTAGAG 60.741 60.000 0.00 0.00 0.00 2.43
187 188 1.295423 GCAGGTTTGGCGAGGTAGA 59.705 57.895 0.00 0.00 0.00 2.59
188 189 1.003839 TGCAGGTTTGGCGAGGTAG 60.004 57.895 0.00 0.00 0.00 3.18
189 190 1.003839 CTGCAGGTTTGGCGAGGTA 60.004 57.895 5.57 0.00 0.00 3.08
190 191 1.764571 TACTGCAGGTTTGGCGAGGT 61.765 55.000 19.93 0.00 0.00 3.85
191 192 1.003839 TACTGCAGGTTTGGCGAGG 60.004 57.895 19.93 0.00 0.00 4.63
192 193 0.320771 ACTACTGCAGGTTTGGCGAG 60.321 55.000 19.93 4.39 0.00 5.03
193 194 0.602638 CACTACTGCAGGTTTGGCGA 60.603 55.000 19.93 0.00 0.00 5.54
194 195 0.602638 TCACTACTGCAGGTTTGGCG 60.603 55.000 19.93 0.00 0.00 5.69
195 196 1.470098 CATCACTACTGCAGGTTTGGC 59.530 52.381 19.93 0.00 0.00 4.52
196 197 1.470098 GCATCACTACTGCAGGTTTGG 59.530 52.381 19.93 1.20 39.46 3.28
197 198 1.470098 GGCATCACTACTGCAGGTTTG 59.530 52.381 19.93 11.29 41.47 2.93
198 199 1.073763 TGGCATCACTACTGCAGGTTT 59.926 47.619 19.93 0.00 41.47 3.27
199 200 0.692476 TGGCATCACTACTGCAGGTT 59.308 50.000 19.93 0.00 41.47 3.50
200 201 0.036010 GTGGCATCACTACTGCAGGT 60.036 55.000 19.93 3.96 41.47 4.00
201 202 2.772739 GTGGCATCACTACTGCAGG 58.227 57.895 19.93 3.21 41.47 4.85
210 211 1.537202 GTCCAAGACAAGTGGCATCAC 59.463 52.381 0.00 0.00 37.04 3.06
211 212 1.545428 GGTCCAAGACAAGTGGCATCA 60.545 52.381 0.00 0.00 35.99 3.07
212 213 1.168714 GGTCCAAGACAAGTGGCATC 58.831 55.000 0.00 0.00 35.99 3.91
213 214 0.606401 CGGTCCAAGACAAGTGGCAT 60.606 55.000 0.00 0.00 35.99 4.40
214 215 1.227823 CGGTCCAAGACAAGTGGCA 60.228 57.895 0.00 0.00 35.99 4.92
215 216 1.966451 CCGGTCCAAGACAAGTGGC 60.966 63.158 0.00 0.00 35.99 5.01
216 217 1.966451 GCCGGTCCAAGACAAGTGG 60.966 63.158 1.90 0.00 37.51 4.00
217 218 1.071471 AGCCGGTCCAAGACAAGTG 59.929 57.895 1.90 0.00 33.68 3.16
218 219 1.071471 CAGCCGGTCCAAGACAAGT 59.929 57.895 1.90 0.00 33.68 3.16
219 220 0.036010 ATCAGCCGGTCCAAGACAAG 60.036 55.000 1.90 0.00 33.68 3.16
220 221 0.036388 GATCAGCCGGTCCAAGACAA 60.036 55.000 1.90 0.00 33.68 3.18
221 222 1.191489 TGATCAGCCGGTCCAAGACA 61.191 55.000 1.90 0.00 33.68 3.41
222 223 0.460987 CTGATCAGCCGGTCCAAGAC 60.461 60.000 10.38 0.00 0.00 3.01
223 224 1.617018 CCTGATCAGCCGGTCCAAGA 61.617 60.000 17.76 0.00 0.00 3.02
224 225 1.153289 CCTGATCAGCCGGTCCAAG 60.153 63.158 17.76 0.00 0.00 3.61
225 226 1.612146 TCCTGATCAGCCGGTCCAA 60.612 57.895 17.76 0.00 0.00 3.53
226 227 2.038813 TCCTGATCAGCCGGTCCA 59.961 61.111 17.76 0.00 0.00 4.02
227 228 2.303549 CTGTCCTGATCAGCCGGTCC 62.304 65.000 17.76 1.75 0.00 4.46
228 229 1.142748 CTGTCCTGATCAGCCGGTC 59.857 63.158 17.76 3.61 0.00 4.79
229 230 3.303189 CTGTCCTGATCAGCCGGT 58.697 61.111 17.76 0.00 0.00 5.28
234 235 1.364626 GGCAACGCTGTCCTGATCAG 61.365 60.000 16.24 16.24 36.18 2.90
235 236 1.375908 GGCAACGCTGTCCTGATCA 60.376 57.895 0.00 0.00 0.00 2.92
236 237 1.078848 AGGCAACGCTGTCCTGATC 60.079 57.895 1.70 0.00 46.39 2.92
237 238 1.376424 CAGGCAACGCTGTCCTGAT 60.376 57.895 18.61 0.00 43.76 2.90
238 239 2.031012 CAGGCAACGCTGTCCTGA 59.969 61.111 18.61 0.00 43.76 3.86
239 240 3.052082 CCAGGCAACGCTGTCCTG 61.052 66.667 17.24 17.24 42.16 3.86
240 241 4.335647 CCCAGGCAACGCTGTCCT 62.336 66.667 0.00 0.00 46.39 3.85
241 242 3.842925 TTCCCAGGCAACGCTGTCC 62.843 63.158 0.00 0.00 46.39 4.02
242 243 2.281484 TTCCCAGGCAACGCTGTC 60.281 61.111 0.00 0.00 46.39 3.51
243 244 2.594592 GTTCCCAGGCAACGCTGT 60.595 61.111 0.00 0.00 46.39 4.40
244 245 3.726517 CGTTCCCAGGCAACGCTG 61.727 66.667 1.79 0.00 40.14 5.18
249 250 4.257654 TTCGGCGTTCCCAGGCAA 62.258 61.111 6.85 0.00 35.34 4.52
252 253 3.546714 AAGGTTCGGCGTTCCCAGG 62.547 63.158 6.85 0.00 0.00 4.45
253 254 2.032071 AAGGTTCGGCGTTCCCAG 59.968 61.111 6.85 0.00 0.00 4.45
254 255 2.281208 CAAGGTTCGGCGTTCCCA 60.281 61.111 6.85 0.00 0.00 4.37
255 256 1.574702 CTTCAAGGTTCGGCGTTCCC 61.575 60.000 6.85 5.42 0.00 3.97
256 257 0.601841 TCTTCAAGGTTCGGCGTTCC 60.602 55.000 6.85 10.84 0.00 3.62
257 258 0.511653 GTCTTCAAGGTTCGGCGTTC 59.488 55.000 6.85 0.75 0.00 3.95
258 259 0.883370 GGTCTTCAAGGTTCGGCGTT 60.883 55.000 6.85 0.00 0.00 4.84
259 260 1.301479 GGTCTTCAAGGTTCGGCGT 60.301 57.895 6.85 0.00 0.00 5.68
260 261 2.380410 CGGTCTTCAAGGTTCGGCG 61.380 63.158 0.00 0.00 0.00 6.46
261 262 2.677979 GCGGTCTTCAAGGTTCGGC 61.678 63.158 0.00 0.00 0.00 5.54
262 263 2.380410 CGCGGTCTTCAAGGTTCGG 61.380 63.158 0.00 0.00 0.00 4.30
263 264 1.372499 TCGCGGTCTTCAAGGTTCG 60.372 57.895 6.13 0.00 0.00 3.95
264 265 1.615107 CGTCGCGGTCTTCAAGGTTC 61.615 60.000 6.13 0.00 0.00 3.62
265 266 1.663702 CGTCGCGGTCTTCAAGGTT 60.664 57.895 6.13 0.00 0.00 3.50
266 267 2.049433 CGTCGCGGTCTTCAAGGT 60.049 61.111 6.13 0.00 0.00 3.50
267 268 3.479269 GCGTCGCGGTCTTCAAGG 61.479 66.667 6.13 0.00 0.00 3.61
268 269 3.479269 GGCGTCGCGGTCTTCAAG 61.479 66.667 11.75 0.00 0.00 3.02
269 270 3.583276 ATGGCGTCGCGGTCTTCAA 62.583 57.895 11.75 0.00 0.00 2.69
270 271 3.583276 AATGGCGTCGCGGTCTTCA 62.583 57.895 11.75 2.35 0.00 3.02
271 272 2.813908 AATGGCGTCGCGGTCTTC 60.814 61.111 11.75 0.00 0.00 2.87
272 273 3.118454 CAATGGCGTCGCGGTCTT 61.118 61.111 11.75 0.00 0.00 3.01
277 278 3.155470 GATGACCAATGGCGTCGCG 62.155 63.158 11.75 0.00 32.68 5.87
278 279 2.709475 GATGACCAATGGCGTCGC 59.291 61.111 9.22 9.22 32.68 5.19
279 280 1.449423 TGGATGACCAATGGCGTCG 60.449 57.895 0.00 0.00 43.91 5.12
280 281 4.635769 TGGATGACCAATGGCGTC 57.364 55.556 0.00 3.29 43.91 5.19
288 289 3.716195 CTGGCCGGTGGATGACCA 61.716 66.667 2.29 0.00 46.55 4.02
289 290 4.489771 CCTGGCCGGTGGATGACC 62.490 72.222 11.58 0.00 42.07 4.02
290 291 4.489771 CCCTGGCCGGTGGATGAC 62.490 72.222 11.58 0.00 0.00 3.06
297 298 3.083997 GATCTCACCCTGGCCGGT 61.084 66.667 11.58 3.15 36.18 5.28
298 299 2.765807 AGATCTCACCCTGGCCGG 60.766 66.667 3.88 3.88 0.00 6.13
299 300 1.617018 TTCAGATCTCACCCTGGCCG 61.617 60.000 0.00 0.00 0.00 6.13
300 301 0.179936 CTTCAGATCTCACCCTGGCC 59.820 60.000 0.00 0.00 0.00 5.36
301 302 0.463474 GCTTCAGATCTCACCCTGGC 60.463 60.000 0.00 0.00 0.00 4.85
302 303 0.179936 GGCTTCAGATCTCACCCTGG 59.820 60.000 0.00 0.00 0.00 4.45
303 304 0.907486 TGGCTTCAGATCTCACCCTG 59.093 55.000 0.00 0.00 0.00 4.45
304 305 0.908198 GTGGCTTCAGATCTCACCCT 59.092 55.000 0.00 0.00 0.00 4.34
305 306 0.908198 AGTGGCTTCAGATCTCACCC 59.092 55.000 7.65 0.74 0.00 4.61
306 307 1.406614 CCAGTGGCTTCAGATCTCACC 60.407 57.143 0.00 1.36 0.00 4.02
307 308 1.277557 ACCAGTGGCTTCAGATCTCAC 59.722 52.381 9.78 0.00 0.00 3.51
308 309 1.649321 ACCAGTGGCTTCAGATCTCA 58.351 50.000 9.78 0.00 0.00 3.27
309 310 3.133721 ACATACCAGTGGCTTCAGATCTC 59.866 47.826 9.78 0.00 0.00 2.75
310 311 3.110705 ACATACCAGTGGCTTCAGATCT 58.889 45.455 9.78 0.00 0.00 2.75
311 312 3.550437 ACATACCAGTGGCTTCAGATC 57.450 47.619 9.78 0.00 0.00 2.75
312 313 5.636903 AATACATACCAGTGGCTTCAGAT 57.363 39.130 9.78 0.00 0.00 2.90
313 314 5.435686 AAATACATACCAGTGGCTTCAGA 57.564 39.130 9.78 0.00 0.00 3.27
314 315 6.515272 AAAAATACATACCAGTGGCTTCAG 57.485 37.500 9.78 0.00 0.00 3.02
315 316 7.068103 CCATAAAAATACATACCAGTGGCTTCA 59.932 37.037 9.78 0.00 0.00 3.02
316 317 7.068226 ACCATAAAAATACATACCAGTGGCTTC 59.932 37.037 9.78 0.00 0.00 3.86
317 318 6.895204 ACCATAAAAATACATACCAGTGGCTT 59.105 34.615 9.78 0.00 0.00 4.35
318 319 6.321181 CACCATAAAAATACATACCAGTGGCT 59.679 38.462 9.78 0.00 0.00 4.75
319 320 6.460953 CCACCATAAAAATACATACCAGTGGC 60.461 42.308 9.78 0.00 34.11 5.01
320 321 6.605594 ACCACCATAAAAATACATACCAGTGG 59.394 38.462 7.91 7.91 44.23 4.00
321 322 7.479980 CACCACCATAAAAATACATACCAGTG 58.520 38.462 0.00 0.00 0.00 3.66
322 323 6.096282 GCACCACCATAAAAATACATACCAGT 59.904 38.462 0.00 0.00 0.00 4.00
323 324 6.321181 AGCACCACCATAAAAATACATACCAG 59.679 38.462 0.00 0.00 0.00 4.00
324 325 6.096141 CAGCACCACCATAAAAATACATACCA 59.904 38.462 0.00 0.00 0.00 3.25
325 326 6.503524 CAGCACCACCATAAAAATACATACC 58.496 40.000 0.00 0.00 0.00 2.73
326 327 5.977129 GCAGCACCACCATAAAAATACATAC 59.023 40.000 0.00 0.00 0.00 2.39
327 328 5.654209 TGCAGCACCACCATAAAAATACATA 59.346 36.000 0.00 0.00 0.00 2.29
328 329 4.465660 TGCAGCACCACCATAAAAATACAT 59.534 37.500 0.00 0.00 0.00 2.29
329 330 3.829026 TGCAGCACCACCATAAAAATACA 59.171 39.130 0.00 0.00 0.00 2.29
330 331 4.448537 TGCAGCACCACCATAAAAATAC 57.551 40.909 0.00 0.00 0.00 1.89
331 332 4.141981 CCATGCAGCACCACCATAAAAATA 60.142 41.667 0.00 0.00 0.00 1.40
332 333 3.369681 CCATGCAGCACCACCATAAAAAT 60.370 43.478 0.00 0.00 0.00 1.82
333 334 2.028294 CCATGCAGCACCACCATAAAAA 60.028 45.455 0.00 0.00 0.00 1.94
334 335 1.549620 CCATGCAGCACCACCATAAAA 59.450 47.619 0.00 0.00 0.00 1.52
335 336 1.184431 CCATGCAGCACCACCATAAA 58.816 50.000 0.00 0.00 0.00 1.40
336 337 0.039472 ACCATGCAGCACCACCATAA 59.961 50.000 0.00 0.00 0.00 1.90
337 338 0.915364 TACCATGCAGCACCACCATA 59.085 50.000 0.00 0.00 0.00 2.74
338 339 0.259647 ATACCATGCAGCACCACCAT 59.740 50.000 0.00 0.00 0.00 3.55
339 340 0.680601 CATACCATGCAGCACCACCA 60.681 55.000 0.00 0.00 0.00 4.17
340 341 1.386525 CCATACCATGCAGCACCACC 61.387 60.000 0.00 0.00 0.00 4.61
341 342 1.386525 CCCATACCATGCAGCACCAC 61.387 60.000 0.00 0.00 0.00 4.16
342 343 1.076850 CCCATACCATGCAGCACCA 60.077 57.895 0.00 0.00 0.00 4.17
343 344 1.829533 CCCCATACCATGCAGCACC 60.830 63.158 0.00 0.00 0.00 5.01
344 345 2.492773 GCCCCATACCATGCAGCAC 61.493 63.158 0.00 0.00 0.00 4.40
345 346 2.123769 GCCCCATACCATGCAGCA 60.124 61.111 0.00 0.00 0.00 4.41
346 347 2.123769 TGCCCCATACCATGCAGC 60.124 61.111 0.00 0.00 0.00 5.25
347 348 4.169271 CTGCCCCATACCATGCAG 57.831 61.111 0.00 0.00 44.43 4.41
348 349 2.123769 GCTGCCCCATACCATGCA 60.124 61.111 0.00 0.00 0.00 3.96
349 350 3.289834 CGCTGCCCCATACCATGC 61.290 66.667 0.00 0.00 0.00 4.06
350 351 0.538057 AATCGCTGCCCCATACCATG 60.538 55.000 0.00 0.00 0.00 3.66
351 352 1.064003 TAATCGCTGCCCCATACCAT 58.936 50.000 0.00 0.00 0.00 3.55
352 353 1.064003 ATAATCGCTGCCCCATACCA 58.936 50.000 0.00 0.00 0.00 3.25
353 354 2.200373 AATAATCGCTGCCCCATACC 57.800 50.000 0.00 0.00 0.00 2.73
354 355 4.154195 CACTAAATAATCGCTGCCCCATAC 59.846 45.833 0.00 0.00 0.00 2.39
355 356 4.323417 CACTAAATAATCGCTGCCCCATA 58.677 43.478 0.00 0.00 0.00 2.74
356 357 3.149196 CACTAAATAATCGCTGCCCCAT 58.851 45.455 0.00 0.00 0.00 4.00
357 358 2.571212 CACTAAATAATCGCTGCCCCA 58.429 47.619 0.00 0.00 0.00 4.96
358 359 1.266989 GCACTAAATAATCGCTGCCCC 59.733 52.381 0.00 0.00 0.00 5.80
359 360 1.069906 CGCACTAAATAATCGCTGCCC 60.070 52.381 0.00 0.00 0.00 5.36
360 361 1.660333 GCGCACTAAATAATCGCTGCC 60.660 52.381 0.30 0.00 42.19 4.85
361 362 1.003972 TGCGCACTAAATAATCGCTGC 60.004 47.619 5.66 0.00 45.24 5.25
362 363 3.001228 TCTTGCGCACTAAATAATCGCTG 59.999 43.478 11.12 0.47 45.24 5.18
363 364 3.194861 TCTTGCGCACTAAATAATCGCT 58.805 40.909 11.12 0.00 45.24 4.93
364 365 3.585748 TCTTGCGCACTAAATAATCGC 57.414 42.857 11.12 0.00 45.23 4.58
365 366 4.957967 CAGTTCTTGCGCACTAAATAATCG 59.042 41.667 11.12 0.00 0.00 3.34
366 367 6.106877 TCAGTTCTTGCGCACTAAATAATC 57.893 37.500 11.12 0.00 0.00 1.75
367 368 5.065218 CCTCAGTTCTTGCGCACTAAATAAT 59.935 40.000 11.12 0.00 0.00 1.28
368 369 4.391830 CCTCAGTTCTTGCGCACTAAATAA 59.608 41.667 11.12 0.00 0.00 1.40
369 370 3.932710 CCTCAGTTCTTGCGCACTAAATA 59.067 43.478 11.12 0.00 0.00 1.40
370 371 2.744202 CCTCAGTTCTTGCGCACTAAAT 59.256 45.455 11.12 3.36 0.00 1.40
371 372 2.143122 CCTCAGTTCTTGCGCACTAAA 58.857 47.619 11.12 1.06 0.00 1.85
372 373 1.795768 CCTCAGTTCTTGCGCACTAA 58.204 50.000 11.12 4.15 0.00 2.24
373 374 0.670546 GCCTCAGTTCTTGCGCACTA 60.671 55.000 11.12 0.00 0.00 2.74
374 375 1.963338 GCCTCAGTTCTTGCGCACT 60.963 57.895 11.12 0.00 0.00 4.40
375 376 1.510480 AAGCCTCAGTTCTTGCGCAC 61.510 55.000 11.12 0.00 0.00 5.34
376 377 0.819259 AAAGCCTCAGTTCTTGCGCA 60.819 50.000 5.66 5.66 0.00 6.09
377 378 0.312102 AAAAGCCTCAGTTCTTGCGC 59.688 50.000 0.00 0.00 0.00 6.09
378 379 1.334869 ACAAAAGCCTCAGTTCTTGCG 59.665 47.619 0.00 0.00 0.00 4.85
379 380 3.443099 AACAAAAGCCTCAGTTCTTGC 57.557 42.857 0.00 0.00 0.00 4.01
402 403 1.632046 GCATCCCGTCGAGCGAAAAA 61.632 55.000 8.63 0.00 44.77 1.94
403 404 2.098233 GCATCCCGTCGAGCGAAAA 61.098 57.895 8.63 0.00 44.77 2.29
404 405 2.501223 AAGCATCCCGTCGAGCGAAA 62.501 55.000 8.63 0.00 44.77 3.46
405 406 2.501223 AAAGCATCCCGTCGAGCGAA 62.501 55.000 8.63 0.00 44.77 4.70
406 407 1.659622 TAAAGCATCCCGTCGAGCGA 61.660 55.000 8.63 0.00 44.77 4.93
407 408 1.209275 CTAAAGCATCCCGTCGAGCG 61.209 60.000 0.00 0.00 40.95 5.03
408 409 0.102481 TCTAAAGCATCCCGTCGAGC 59.898 55.000 0.00 0.00 0.00 5.03
409 410 1.676529 TCTCTAAAGCATCCCGTCGAG 59.323 52.381 0.00 0.00 0.00 4.04
410 411 1.758936 TCTCTAAAGCATCCCGTCGA 58.241 50.000 0.00 0.00 0.00 4.20
411 412 2.223829 ACATCTCTAAAGCATCCCGTCG 60.224 50.000 0.00 0.00 0.00 5.12
412 413 3.181475 TGACATCTCTAAAGCATCCCGTC 60.181 47.826 0.00 0.00 0.00 4.79
413 414 2.766263 TGACATCTCTAAAGCATCCCGT 59.234 45.455 0.00 0.00 0.00 5.28
414 415 3.126831 GTGACATCTCTAAAGCATCCCG 58.873 50.000 0.00 0.00 0.00 5.14
415 416 3.126831 CGTGACATCTCTAAAGCATCCC 58.873 50.000 0.00 0.00 0.00 3.85
416 417 3.553511 CACGTGACATCTCTAAAGCATCC 59.446 47.826 10.90 0.00 0.00 3.51
417 418 3.000724 GCACGTGACATCTCTAAAGCATC 59.999 47.826 22.23 0.00 0.00 3.91
418 419 2.932614 GCACGTGACATCTCTAAAGCAT 59.067 45.455 22.23 0.00 0.00 3.79
419 420 2.029020 AGCACGTGACATCTCTAAAGCA 60.029 45.455 22.23 0.00 0.00 3.91
420 421 2.346847 CAGCACGTGACATCTCTAAAGC 59.653 50.000 22.23 0.00 0.00 3.51
421 422 3.579709 ACAGCACGTGACATCTCTAAAG 58.420 45.455 22.23 0.00 0.00 1.85
422 423 3.660501 ACAGCACGTGACATCTCTAAA 57.339 42.857 22.23 0.00 0.00 1.85
444 445 2.112928 ATCAACCTGTGCGTGGCA 59.887 55.556 0.00 0.00 35.60 4.92
445 446 2.562912 CATCAACCTGTGCGTGGC 59.437 61.111 0.00 0.00 0.00 5.01
446 447 0.673333 TAGCATCAACCTGTGCGTGG 60.673 55.000 0.00 0.00 45.69 4.94
447 448 1.063027 CATAGCATCAACCTGTGCGTG 59.937 52.381 0.00 0.00 45.69 5.34
448 449 1.372582 CATAGCATCAACCTGTGCGT 58.627 50.000 0.00 0.00 45.69 5.24
449 450 0.028505 GCATAGCATCAACCTGTGCG 59.971 55.000 0.00 0.00 45.69 5.34
450 451 1.332997 GAGCATAGCATCAACCTGTGC 59.667 52.381 2.49 2.49 44.61 4.57
451 452 2.915349 AGAGCATAGCATCAACCTGTG 58.085 47.619 0.00 0.00 0.00 3.66
452 453 4.760530 TTAGAGCATAGCATCAACCTGT 57.239 40.909 0.00 0.00 0.00 4.00
453 454 6.933521 ACTAATTAGAGCATAGCATCAACCTG 59.066 38.462 19.38 0.00 0.00 4.00
454 455 6.933521 CACTAATTAGAGCATAGCATCAACCT 59.066 38.462 19.38 0.00 0.00 3.50
455 456 6.708054 ACACTAATTAGAGCATAGCATCAACC 59.292 38.462 19.38 0.00 0.00 3.77
456 457 7.721286 ACACTAATTAGAGCATAGCATCAAC 57.279 36.000 19.38 0.00 0.00 3.18
457 458 7.986889 TGAACACTAATTAGAGCATAGCATCAA 59.013 33.333 19.38 0.00 0.00 2.57
458 459 7.500141 TGAACACTAATTAGAGCATAGCATCA 58.500 34.615 19.38 7.05 0.00 3.07
459 460 7.953158 TGAACACTAATTAGAGCATAGCATC 57.047 36.000 19.38 4.92 0.00 3.91
460 461 9.650539 CTATGAACACTAATTAGAGCATAGCAT 57.349 33.333 19.38 13.23 31.08 3.79
461 462 8.090831 CCTATGAACACTAATTAGAGCATAGCA 58.909 37.037 19.38 7.75 35.08 3.49
462 463 8.307483 TCCTATGAACACTAATTAGAGCATAGC 58.693 37.037 19.38 2.76 35.08 2.97
465 466 7.605691 GCATCCTATGAACACTAATTAGAGCAT 59.394 37.037 19.38 15.92 0.00 3.79
466 467 6.931281 GCATCCTATGAACACTAATTAGAGCA 59.069 38.462 19.38 10.68 0.00 4.26
467 468 7.158021 AGCATCCTATGAACACTAATTAGAGC 58.842 38.462 19.38 5.75 0.00 4.09
483 484 4.042062 TGCCAGTAAAGCATAGCATCCTAT 59.958 41.667 0.00 0.00 34.69 2.57
484 485 3.390967 TGCCAGTAAAGCATAGCATCCTA 59.609 43.478 0.00 0.00 34.69 2.94
485 486 2.173356 TGCCAGTAAAGCATAGCATCCT 59.827 45.455 0.00 0.00 34.69 3.24
486 487 2.551459 CTGCCAGTAAAGCATAGCATCC 59.449 50.000 0.00 0.00 40.04 3.51
487 488 3.003068 CACTGCCAGTAAAGCATAGCATC 59.997 47.826 0.00 0.00 40.04 3.91
488 489 2.947652 CACTGCCAGTAAAGCATAGCAT 59.052 45.455 0.00 0.00 40.04 3.79
489 490 2.027285 TCACTGCCAGTAAAGCATAGCA 60.027 45.455 0.00 0.00 40.04 3.49
490 491 2.632377 TCACTGCCAGTAAAGCATAGC 58.368 47.619 0.00 0.00 40.04 2.97
491 492 6.051717 ACTAATCACTGCCAGTAAAGCATAG 58.948 40.000 0.00 0.00 40.04 2.23
492 493 5.989477 ACTAATCACTGCCAGTAAAGCATA 58.011 37.500 0.00 0.00 40.04 3.14
493 494 4.848357 ACTAATCACTGCCAGTAAAGCAT 58.152 39.130 0.00 0.00 40.04 3.79
494 495 4.286297 ACTAATCACTGCCAGTAAAGCA 57.714 40.909 0.00 0.00 38.82 3.91
495 496 5.629079 AAACTAATCACTGCCAGTAAAGC 57.371 39.130 0.00 0.00 0.00 3.51
498 499 8.889717 GCTAATTAAACTAATCACTGCCAGTAA 58.110 33.333 0.00 0.00 0.00 2.24
499 500 8.265055 AGCTAATTAAACTAATCACTGCCAGTA 58.735 33.333 0.00 0.00 0.00 2.74
500 501 7.112779 AGCTAATTAAACTAATCACTGCCAGT 58.887 34.615 0.00 0.00 0.00 4.00
501 502 7.559590 AGCTAATTAAACTAATCACTGCCAG 57.440 36.000 0.00 0.00 0.00 4.85
502 503 7.609918 TGAAGCTAATTAAACTAATCACTGCCA 59.390 33.333 0.00 0.00 0.00 4.92
503 504 7.910683 GTGAAGCTAATTAAACTAATCACTGCC 59.089 37.037 10.20 0.00 0.00 4.85
504 505 8.669243 AGTGAAGCTAATTAAACTAATCACTGC 58.331 33.333 15.31 1.26 29.85 4.40
505 506 9.979270 CAGTGAAGCTAATTAAACTAATCACTG 57.021 33.333 21.39 21.39 37.27 3.66
506 507 9.726438 ACAGTGAAGCTAATTAAACTAATCACT 57.274 29.630 12.52 12.52 30.55 3.41
507 508 9.760660 CACAGTGAAGCTAATTAAACTAATCAC 57.239 33.333 0.00 9.78 0.00 3.06
508 509 8.946085 CCACAGTGAAGCTAATTAAACTAATCA 58.054 33.333 0.62 0.00 0.00 2.57
509 510 7.910683 GCCACAGTGAAGCTAATTAAACTAATC 59.089 37.037 0.62 0.00 0.00 1.75
510 511 7.393234 TGCCACAGTGAAGCTAATTAAACTAAT 59.607 33.333 0.62 0.00 0.00 1.73
511 512 6.712998 TGCCACAGTGAAGCTAATTAAACTAA 59.287 34.615 0.62 0.00 0.00 2.24
512 513 6.234920 TGCCACAGTGAAGCTAATTAAACTA 58.765 36.000 0.62 0.00 0.00 2.24
513 514 5.070001 TGCCACAGTGAAGCTAATTAAACT 58.930 37.500 0.62 0.00 0.00 2.66
514 515 5.371115 TGCCACAGTGAAGCTAATTAAAC 57.629 39.130 0.62 0.00 0.00 2.01
515 516 5.767665 TCTTGCCACAGTGAAGCTAATTAAA 59.232 36.000 0.62 0.00 0.00 1.52
516 517 5.312895 TCTTGCCACAGTGAAGCTAATTAA 58.687 37.500 0.62 0.00 0.00 1.40
517 518 4.905429 TCTTGCCACAGTGAAGCTAATTA 58.095 39.130 0.62 0.00 0.00 1.40
518 519 3.754965 TCTTGCCACAGTGAAGCTAATT 58.245 40.909 0.62 0.00 0.00 1.40
519 520 3.341823 CTCTTGCCACAGTGAAGCTAAT 58.658 45.455 0.62 0.00 0.00 1.73
520 521 2.771089 CTCTTGCCACAGTGAAGCTAA 58.229 47.619 0.62 0.00 0.00 3.09
521 522 1.609061 GCTCTTGCCACAGTGAAGCTA 60.609 52.381 0.62 0.00 0.00 3.32
522 523 0.888285 GCTCTTGCCACAGTGAAGCT 60.888 55.000 0.62 0.00 0.00 3.74
523 524 0.888285 AGCTCTTGCCACAGTGAAGC 60.888 55.000 0.62 0.00 40.80 3.86
524 525 0.873054 CAGCTCTTGCCACAGTGAAG 59.127 55.000 0.62 0.00 40.80 3.02
525 526 0.469494 TCAGCTCTTGCCACAGTGAA 59.531 50.000 0.62 0.00 40.80 3.18
526 527 0.250038 GTCAGCTCTTGCCACAGTGA 60.250 55.000 0.62 0.00 40.80 3.41
527 528 1.563435 CGTCAGCTCTTGCCACAGTG 61.563 60.000 0.00 0.00 40.80 3.66
528 529 1.301244 CGTCAGCTCTTGCCACAGT 60.301 57.895 0.00 0.00 40.80 3.55
529 530 2.675056 GCGTCAGCTCTTGCCACAG 61.675 63.158 0.00 0.00 40.80 3.66
530 531 2.666190 GCGTCAGCTCTTGCCACA 60.666 61.111 0.00 0.00 40.80 4.17
531 532 3.426568 GGCGTCAGCTCTTGCCAC 61.427 66.667 13.35 0.00 46.76 5.01
534 535 0.455633 CAAATGGCGTCAGCTCTTGC 60.456 55.000 0.00 0.00 44.37 4.01
535 536 0.455633 GCAAATGGCGTCAGCTCTTG 60.456 55.000 0.00 0.00 44.37 3.02
536 537 1.878775 GCAAATGGCGTCAGCTCTT 59.121 52.632 0.00 0.00 44.37 2.85
537 538 3.583383 GCAAATGGCGTCAGCTCT 58.417 55.556 0.00 0.00 44.37 4.09
546 547 5.147162 GCAACTCTATAATACGCAAATGGC 58.853 41.667 0.00 0.00 39.90 4.40
547 548 5.176774 TCGCAACTCTATAATACGCAAATGG 59.823 40.000 0.00 0.00 0.00 3.16
548 549 6.210396 TCGCAACTCTATAATACGCAAATG 57.790 37.500 0.00 0.00 0.00 2.32
549 550 7.421530 AATCGCAACTCTATAATACGCAAAT 57.578 32.000 0.00 0.00 0.00 2.32
550 551 6.838198 AATCGCAACTCTATAATACGCAAA 57.162 33.333 0.00 0.00 0.00 3.68
551 552 7.143340 ACTAATCGCAACTCTATAATACGCAA 58.857 34.615 0.00 0.00 0.00 4.85
552 553 6.675026 ACTAATCGCAACTCTATAATACGCA 58.325 36.000 0.00 0.00 0.00 5.24
553 554 7.961827 AGTACTAATCGCAACTCTATAATACGC 59.038 37.037 0.00 0.00 0.00 4.42
554 555 9.263626 CAGTACTAATCGCAACTCTATAATACG 57.736 37.037 0.00 0.00 0.00 3.06
555 556 9.063739 GCAGTACTAATCGCAACTCTATAATAC 57.936 37.037 0.00 0.00 0.00 1.89
556 557 9.011095 AGCAGTACTAATCGCAACTCTATAATA 57.989 33.333 0.00 0.00 0.00 0.98
557 558 7.887381 AGCAGTACTAATCGCAACTCTATAAT 58.113 34.615 0.00 0.00 0.00 1.28
558 559 7.273320 AGCAGTACTAATCGCAACTCTATAA 57.727 36.000 0.00 0.00 0.00 0.98
559 560 6.072618 GGAGCAGTACTAATCGCAACTCTATA 60.073 42.308 0.00 0.00 0.00 1.31
560 561 5.278561 GGAGCAGTACTAATCGCAACTCTAT 60.279 44.000 0.00 0.00 0.00 1.98
561 562 4.036498 GGAGCAGTACTAATCGCAACTCTA 59.964 45.833 0.00 0.00 0.00 2.43
562 563 3.181485 GGAGCAGTACTAATCGCAACTCT 60.181 47.826 0.00 0.00 0.00 3.24
563 564 3.117046 GGAGCAGTACTAATCGCAACTC 58.883 50.000 0.00 0.00 0.00 3.01
564 565 2.761208 AGGAGCAGTACTAATCGCAACT 59.239 45.455 0.00 0.00 0.00 3.16
565 566 3.166489 AGGAGCAGTACTAATCGCAAC 57.834 47.619 0.00 0.00 0.00 4.17
566 567 3.887621 AAGGAGCAGTACTAATCGCAA 57.112 42.857 0.00 0.00 0.00 4.85
567 568 3.887621 AAAGGAGCAGTACTAATCGCA 57.112 42.857 0.00 0.00 0.00 5.10
568 569 3.556365 GGAAAAGGAGCAGTACTAATCGC 59.444 47.826 0.00 0.00 0.00 4.58
569 570 5.012328 AGGAAAAGGAGCAGTACTAATCG 57.988 43.478 0.00 0.00 0.00 3.34
570 571 6.228616 AGAGGAAAAGGAGCAGTACTAATC 57.771 41.667 0.00 0.00 0.00 1.75
571 572 6.628644 AAGAGGAAAAGGAGCAGTACTAAT 57.371 37.500 0.00 0.00 0.00 1.73
572 573 6.435292 AAAGAGGAAAAGGAGCAGTACTAA 57.565 37.500 0.00 0.00 0.00 2.24
573 574 6.042781 TGAAAAGAGGAAAAGGAGCAGTACTA 59.957 38.462 0.00 0.00 0.00 1.82
574 575 4.984146 AAAGAGGAAAAGGAGCAGTACT 57.016 40.909 0.00 0.00 0.00 2.73
575 576 5.063880 TGAAAAGAGGAAAAGGAGCAGTAC 58.936 41.667 0.00 0.00 0.00 2.73
576 577 5.304686 TGAAAAGAGGAAAAGGAGCAGTA 57.695 39.130 0.00 0.00 0.00 2.74
577 578 4.170468 TGAAAAGAGGAAAAGGAGCAGT 57.830 40.909 0.00 0.00 0.00 4.40
578 579 4.763793 TGATGAAAAGAGGAAAAGGAGCAG 59.236 41.667 0.00 0.00 0.00 4.24
579 580 4.728772 TGATGAAAAGAGGAAAAGGAGCA 58.271 39.130 0.00 0.00 0.00 4.26
580 581 5.006386 TCTGATGAAAAGAGGAAAAGGAGC 58.994 41.667 0.00 0.00 0.00 4.70
581 582 5.414144 GGTCTGATGAAAAGAGGAAAAGGAG 59.586 44.000 0.00 0.00 0.00 3.69
582 583 5.316987 GGTCTGATGAAAAGAGGAAAAGGA 58.683 41.667 0.00 0.00 0.00 3.36
583 584 4.460731 GGGTCTGATGAAAAGAGGAAAAGG 59.539 45.833 0.00 0.00 0.00 3.11
584 585 4.154918 CGGGTCTGATGAAAAGAGGAAAAG 59.845 45.833 0.00 0.00 0.00 2.27
585 586 4.072131 CGGGTCTGATGAAAAGAGGAAAA 58.928 43.478 0.00 0.00 0.00 2.29
586 587 3.559171 CCGGGTCTGATGAAAAGAGGAAA 60.559 47.826 0.00 0.00 0.00 3.13
587 588 2.027192 CCGGGTCTGATGAAAAGAGGAA 60.027 50.000 0.00 0.00 0.00 3.36
588 589 1.555075 CCGGGTCTGATGAAAAGAGGA 59.445 52.381 0.00 0.00 0.00 3.71
589 590 1.279271 ACCGGGTCTGATGAAAAGAGG 59.721 52.381 6.32 0.00 0.00 3.69
590 591 2.622436 GACCGGGTCTGATGAAAAGAG 58.378 52.381 19.92 0.00 0.00 2.85
591 592 1.067142 CGACCGGGTCTGATGAAAAGA 60.067 52.381 23.86 0.00 0.00 2.52
592 593 1.337823 ACGACCGGGTCTGATGAAAAG 60.338 52.381 23.86 8.29 0.00 2.27
593 594 0.682852 ACGACCGGGTCTGATGAAAA 59.317 50.000 23.86 0.00 0.00 2.29
594 595 0.682852 AACGACCGGGTCTGATGAAA 59.317 50.000 23.86 0.00 0.00 2.69
595 596 0.037697 CAACGACCGGGTCTGATGAA 60.038 55.000 23.86 0.00 0.00 2.57
606 607 0.815734 ACTGATACCTCCAACGACCG 59.184 55.000 0.00 0.00 0.00 4.79
618 619 3.566322 AGACGAGCAGATGGTACTGATAC 59.434 47.826 0.00 0.00 39.94 2.24
624 625 2.294074 AGAGAGACGAGCAGATGGTAC 58.706 52.381 0.00 0.00 0.00 3.34
637 638 7.220890 AGGGAGGGAAGATATATAGAGAGAC 57.779 44.000 0.00 0.00 0.00 3.36
665 666 3.088532 GGGAATGTGGTGCATTAACTCA 58.911 45.455 0.00 0.00 46.90 3.41
689 690 1.257743 TGCTCAGCCGAGTAAAGAGT 58.742 50.000 0.00 0.00 41.71 3.24
694 695 3.259064 GTTATGTTGCTCAGCCGAGTAA 58.741 45.455 0.00 0.00 41.00 2.24
696 697 1.676014 GGTTATGTTGCTCAGCCGAGT 60.676 52.381 0.00 0.00 41.71 4.18
712 719 2.232941 GGATGAGAGTTGTGTCGGGTTA 59.767 50.000 0.00 0.00 0.00 2.85
718 725 3.321497 GTGTCTGGATGAGAGTTGTGTC 58.679 50.000 0.00 0.00 0.00 3.67
795 802 2.206036 ACACGGGAAAGGAGGGGA 59.794 61.111 0.00 0.00 0.00 4.81
798 805 0.320771 CAGACACACGGGAAAGGAGG 60.321 60.000 0.00 0.00 0.00 4.30
800 807 1.070786 GCAGACACACGGGAAAGGA 59.929 57.895 0.00 0.00 0.00 3.36
801 808 2.317609 CGCAGACACACGGGAAAGG 61.318 63.158 0.00 0.00 0.00 3.11
802 809 0.319211 TACGCAGACACACGGGAAAG 60.319 55.000 0.00 0.00 0.00 2.62
803 810 0.104487 TTACGCAGACACACGGGAAA 59.896 50.000 0.00 0.00 0.00 3.13
804 811 0.319211 CTTACGCAGACACACGGGAA 60.319 55.000 0.00 0.00 0.00 3.97
849 857 0.460987 GCTTGCGAGTATGAGCAGGT 60.461 55.000 2.14 0.00 44.72 4.00
963 979 5.957842 TTCAGGATTTGTGATGTAACCAC 57.042 39.130 0.00 0.00 35.23 4.16
966 982 9.507280 CAATGTATTCAGGATTTGTGATGTAAC 57.493 33.333 0.00 0.00 0.00 2.50
967 983 8.685427 CCAATGTATTCAGGATTTGTGATGTAA 58.315 33.333 0.00 0.00 0.00 2.41
1182 1215 4.349503 AGCACTTGCATGGCCGGA 62.350 61.111 5.05 0.00 45.16 5.14
1196 1229 2.725312 CGCAGCTTCCCTAGGAGCA 61.725 63.158 21.22 0.00 31.21 4.26
1203 1236 2.659610 GAGTCACGCAGCTTCCCT 59.340 61.111 0.00 0.00 0.00 4.20
1234 1267 2.553904 CCAGCTCATCCAACAAGTCCTT 60.554 50.000 0.00 0.00 0.00 3.36
1282 1315 0.874175 GCAGCATCGTATGTGCCGTA 60.874 55.000 6.06 0.00 43.50 4.02
1468 1520 2.744768 GCTTCTGCCTAGCACGTGC 61.745 63.158 32.79 32.79 38.51 5.34
1494 1591 1.454201 TTGGCGTTGCGGATGAATTA 58.546 45.000 0.00 0.00 0.00 1.40
1504 1604 0.669932 TGATTGGCATTTGGCGTTGC 60.670 50.000 0.00 0.00 46.16 4.17
1553 1671 8.522830 GGAAAGATGATCAATGGACAAGTTTAA 58.477 33.333 0.00 0.00 0.00 1.52
1565 1683 4.543689 AGCATGTGGGAAAGATGATCAAT 58.456 39.130 0.00 0.00 31.04 2.57
1569 1687 3.657398 TGAGCATGTGGGAAAGATGAT 57.343 42.857 0.00 0.00 31.04 2.45
1606 1727 1.604604 GCACCACAAAGAGTTGGCTA 58.395 50.000 0.00 0.00 39.22 3.93
1793 3015 4.811969 TTTGGCTCTATACTTTGACCGA 57.188 40.909 0.00 0.00 0.00 4.69
1853 3075 4.638865 GGTATTTACCCTTGGTCATGTCAC 59.361 45.833 0.00 0.00 40.53 3.67
2161 3383 3.377573 ACCTTTTCCAATCATCCCCATG 58.622 45.455 0.00 0.00 0.00 3.66
2259 3481 4.789012 ATGTTTAGCTGTTCCAACCATG 57.211 40.909 0.00 0.00 0.00 3.66
2320 3545 4.866486 GCCAAAGACAAATGCAAGGAATAG 59.134 41.667 0.00 0.00 0.00 1.73
2561 3787 2.517959 TGTTGATGCTGGAAAGGAAGG 58.482 47.619 0.00 0.00 0.00 3.46
2630 3856 5.450818 TCCATAAGTTGATTAGCTGGGTT 57.549 39.130 0.00 0.00 28.34 4.11
2648 3874 7.931015 TTGTAAGATACCTAGTCCAATCCAT 57.069 36.000 0.00 0.00 0.00 3.41
2771 3997 3.429272 GGTCATGCACAACATAACATGGG 60.429 47.826 0.00 0.00 40.22 4.00
2997 4232 7.523709 GCTTTCATCCACTTCTCCAAATAACAA 60.524 37.037 0.00 0.00 0.00 2.83
3130 4365 2.038557 AGGTACCGCAGATGAACAAGTT 59.961 45.455 6.18 0.00 0.00 2.66
3312 4550 7.634671 TGACAATATCAGAATGCAACTCATT 57.365 32.000 0.00 0.00 39.20 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.