Multiple sequence alignment - TraesCS7B01G495400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G495400 chr7B 100.000 5347 0 0 1 5347 746487814 746493160 0.000000e+00 9875.0
1 TraesCS7B01G495400 chr7B 98.115 1751 26 1 2381 4131 746275341 746277084 0.000000e+00 3044.0
2 TraesCS7B01G495400 chr7B 94.938 1857 71 11 1505 3349 744663356 744661511 0.000000e+00 2887.0
3 TraesCS7B01G495400 chr7B 97.484 954 23 1 1394 2346 746274389 746275342 0.000000e+00 1628.0
4 TraesCS7B01G495400 chr7B 95.888 535 19 3 4124 4655 746277624 746278158 0.000000e+00 863.0
5 TraesCS7B01G495400 chr7B 89.062 704 59 11 3369 4067 253696274 253695584 0.000000e+00 857.0
6 TraesCS7B01G495400 chr7B 95.472 530 21 3 4124 4650 744660046 744659517 0.000000e+00 843.0
7 TraesCS7B01G495400 chr7B 88.905 685 65 8 3388 4067 718359748 718359070 0.000000e+00 833.0
8 TraesCS7B01G495400 chr7B 95.435 460 15 2 948 1401 744663821 744663362 0.000000e+00 728.0
9 TraesCS7B01G495400 chr7B 82.329 730 101 15 1974 2680 253700122 253699398 4.580000e-170 608.0
10 TraesCS7B01G495400 chr7B 86.172 499 58 6 4859 5347 529942840 529943337 3.670000e-146 529.0
11 TraesCS7B01G495400 chr7B 95.973 298 11 1 1117 1413 746274066 746274363 2.900000e-132 483.0
12 TraesCS7B01G495400 chr7B 86.224 392 52 2 2729 3120 718361162 718360773 1.780000e-114 424.0
13 TraesCS7B01G495400 chr7B 85.222 406 44 10 2720 3120 253698731 253698337 2.320000e-108 403.0
14 TraesCS7B01G495400 chr7B 94.301 193 2 1 1 193 707276588 707276405 2.440000e-73 287.0
15 TraesCS7B01G495400 chr7B 93.782 193 3 1 1 193 707276006 707275823 1.130000e-71 281.0
16 TraesCS7B01G495400 chr7B 93.264 193 4 1 1 193 747639024 747639207 5.280000e-70 276.0
17 TraesCS7B01G495400 chr7B 92.701 137 7 3 4663 4798 744658073 744657939 1.520000e-45 195.0
18 TraesCS7B01G495400 chr7B 88.623 167 7 4 922 1077 746211819 746211984 5.470000e-45 193.0
19 TraesCS7B01G495400 chr7B 96.739 92 3 0 4859 4950 744657690 744657599 2.580000e-33 154.0
20 TraesCS7B01G495400 chr7B 92.929 99 6 1 264 362 610465981 610466078 5.580000e-30 143.0
21 TraesCS7B01G495400 chr7D 95.699 2697 86 13 1448 4131 633056569 633053890 0.000000e+00 4311.0
22 TraesCS7B01G495400 chr7D 93.478 690 29 9 4124 4798 633053369 633052681 0.000000e+00 1011.0
23 TraesCS7B01G495400 chr7D 90.000 670 57 7 3403 4067 621646451 621647115 0.000000e+00 857.0
24 TraesCS7B01G495400 chr7D 88.936 705 60 11 3369 4067 279743836 279744528 0.000000e+00 854.0
25 TraesCS7B01G495400 chr7D 94.239 486 13 3 950 1435 633057187 633056717 0.000000e+00 728.0
26 TraesCS7B01G495400 chr7D 93.483 491 29 1 4860 5347 633052025 633051535 0.000000e+00 726.0
27 TraesCS7B01G495400 chr7D 82.763 731 100 12 1971 2680 279739926 279740651 3.510000e-176 628.0
28 TraesCS7B01G495400 chr7D 87.179 390 42 3 4859 5240 500785528 500785917 2.290000e-118 436.0
29 TraesCS7B01G495400 chr7D 86.567 402 39 9 2720 3117 279741318 279741708 3.830000e-116 429.0
30 TraesCS7B01G495400 chr7D 85.213 399 49 6 2721 3117 621644898 621645288 8.340000e-108 401.0
31 TraesCS7B01G495400 chr7D 91.566 249 20 1 356 603 40008611 40008363 5.130000e-90 342.0
32 TraesCS7B01G495400 chr7D 90.943 265 8 8 607 871 633057450 633057202 5.130000e-90 342.0
33 TraesCS7B01G495400 chr7D 95.082 61 1 2 212 272 633057519 633057461 1.590000e-15 95.3
34 TraesCS7B01G495400 chr7A 88.984 699 60 10 3374 4067 316017580 316016894 0.000000e+00 848.0
35 TraesCS7B01G495400 chr7A 88.726 683 67 7 3390 4067 717089052 717089729 0.000000e+00 826.0
36 TraesCS7B01G495400 chr7A 82.700 763 108 11 1940 2680 316022439 316021679 0.000000e+00 656.0
37 TraesCS7B01G495400 chr7A 81.776 653 90 17 2047 2680 717085537 717086179 2.210000e-143 520.0
38 TraesCS7B01G495400 chr7A 86.000 400 50 6 2721 3117 717086821 717087217 1.780000e-114 424.0
39 TraesCS7B01G495400 chr7A 86.548 394 39 10 2729 3120 316021009 316020628 6.400000e-114 422.0
40 TraesCS7B01G495400 chr7A 81.867 375 58 8 1445 1813 735710301 735710671 1.870000e-79 307.0
41 TraesCS7B01G495400 chr7A 93.264 193 4 1 1 193 32702112 32702295 5.280000e-70 276.0
42 TraesCS7B01G495400 chr7A 92.638 163 3 1 38 200 671177389 671177236 5.390000e-55 226.0
43 TraesCS7B01G495400 chr1B 88.473 694 74 5 3369 4060 657408944 657409633 0.000000e+00 833.0
44 TraesCS7B01G495400 chr1B 85.402 733 82 13 3339 4060 588514310 588513592 0.000000e+00 737.0
45 TraesCS7B01G495400 chr1B 84.796 638 82 9 2108 2733 657405968 657406602 1.260000e-175 627.0
46 TraesCS7B01G495400 chr1B 88.280 529 55 6 3541 4067 657415193 657415716 1.260000e-175 627.0
47 TraesCS7B01G495400 chr1B 82.021 762 77 18 3339 4064 657416545 657417282 1.280000e-165 593.0
48 TraesCS7B01G495400 chr1B 92.432 185 14 0 3118 3302 657408435 657408619 1.140000e-66 265.0
49 TraesCS7B01G495400 chr1B 86.082 194 20 4 3118 3310 657414561 657414748 9.080000e-48 202.0
50 TraesCS7B01G495400 chr1D 87.312 733 77 10 3339 4060 472908579 472909306 0.000000e+00 824.0
51 TraesCS7B01G495400 chr1D 84.284 649 87 10 2096 2733 472905810 472906454 2.120000e-173 619.0
52 TraesCS7B01G495400 chr1D 84.950 505 51 11 1603 2083 435295269 435294766 6.220000e-134 488.0
53 TraesCS7B01G495400 chr1D 83.378 373 39 13 3339 3706 435283472 435283118 1.860000e-84 324.0
54 TraesCS7B01G495400 chr1D 86.833 281 31 3 3785 4060 435283115 435282836 5.200000e-80 309.0
55 TraesCS7B01G495400 chr1D 85.149 303 23 2 3786 4066 472916877 472917179 1.880000e-74 291.0
56 TraesCS7B01G495400 chr1D 92.973 185 13 0 3118 3302 472908234 472908418 2.450000e-68 270.0
57 TraesCS7B01G495400 chr1D 89.247 186 18 2 3118 3302 472914173 472914357 1.160000e-56 231.0
58 TraesCS7B01G495400 chr1A 87.312 733 78 9 3339 4060 566638657 566639385 0.000000e+00 824.0
59 TraesCS7B01G495400 chr1A 85.845 657 54 20 1445 2064 532807417 532806763 0.000000e+00 662.0
60 TraesCS7B01G495400 chr1A 88.258 528 57 4 3541 4067 566647209 566647732 1.260000e-175 627.0
61 TraesCS7B01G495400 chr1A 82.422 768 75 26 3336 4067 566648547 566649290 2.740000e-172 616.0
62 TraesCS7B01G495400 chr1A 86.263 495 61 4 4859 5347 542901582 542902075 1.020000e-146 531.0
63 TraesCS7B01G495400 chr1A 91.270 252 21 1 356 606 98876102 98875851 5.130000e-90 342.0
64 TraesCS7B01G495400 chr1A 82.337 368 35 14 3339 3689 532794986 532794632 5.240000e-75 292.0
65 TraesCS7B01G495400 chr1A 91.351 185 16 0 3118 3302 566638312 566638496 2.470000e-63 254.0
66 TraesCS7B01G495400 chr1A 86.598 194 24 2 3118 3310 566646564 566646756 4.190000e-51 213.0
67 TraesCS7B01G495400 chr1A 95.652 92 4 0 271 362 173963819 173963910 1.200000e-31 148.0
68 TraesCS7B01G495400 chr5A 87.949 473 51 2 4881 5347 246805956 246806428 2.180000e-153 553.0
69 TraesCS7B01G495400 chr5A 91.566 249 20 1 356 603 320834472 320834720 5.130000e-90 342.0
70 TraesCS7B01G495400 chr2D 87.526 473 53 2 4881 5347 544931496 544931968 4.710000e-150 542.0
71 TraesCS7B01G495400 chr2D 87.104 473 55 2 4881 5347 459045179 459044707 1.020000e-146 531.0
72 TraesCS7B01G495400 chr2D 88.338 343 39 1 5006 5347 423432554 423432896 1.390000e-110 411.0
73 TraesCS7B01G495400 chr2D 91.165 249 20 2 356 603 591878969 591879216 2.390000e-88 337.0
74 TraesCS7B01G495400 chr3D 87.315 473 53 4 4881 5347 260974875 260975346 7.880000e-148 534.0
75 TraesCS7B01G495400 chr5B 87.385 436 53 2 1443 1876 709422137 709422572 2.880000e-137 499.0
76 TraesCS7B01G495400 chr5B 87.940 199 18 3 3118 3310 709424444 709424642 4.170000e-56 230.0
77 TraesCS7B01G495400 chr5B 85.799 169 19 4 2951 3117 709423414 709423579 1.980000e-39 174.0
78 TraesCS7B01G495400 chr5B 100.000 28 0 0 4730 4757 641101935 641101962 1.000000e-02 52.8
79 TraesCS7B01G495400 chr5D 86.258 473 47 4 4881 5347 123889301 123889761 1.030000e-136 497.0
80 TraesCS7B01G495400 chr5D 83.771 419 40 14 1452 1868 557183124 557182732 6.540000e-99 372.0
81 TraesCS7B01G495400 chr5D 80.777 489 55 18 1947 2417 557182701 557182234 3.960000e-91 346.0
82 TraesCS7B01G495400 chr5D 93.814 97 6 0 265 361 413056168 413056264 4.320000e-31 147.0
83 TraesCS7B01G495400 chr6A 85.412 473 62 3 4881 5347 18699061 18698590 8.050000e-133 484.0
84 TraesCS7B01G495400 chr6A 100.000 28 0 0 4730 4757 511613049 511613022 1.000000e-02 52.8
85 TraesCS7B01G495400 chr4A 87.990 383 45 1 1452 1833 605666834 605666452 8.170000e-123 451.0
86 TraesCS7B01G495400 chr4A 81.883 563 65 20 1894 2435 605666435 605665889 1.770000e-119 440.0
87 TraesCS7B01G495400 chr4A 93.264 193 4 1 1 193 662104200 662104017 5.280000e-70 276.0
88 TraesCS7B01G495400 chr4A 92.857 196 5 1 1 196 714104924 714104738 5.280000e-70 276.0
89 TraesCS7B01G495400 chr4A 92.746 193 5 1 1 193 609395283 609395466 2.450000e-68 270.0
90 TraesCS7B01G495400 chr4A 93.617 94 6 0 268 361 4151965 4152058 2.010000e-29 141.0
91 TraesCS7B01G495400 chr3A 91.968 249 19 1 356 603 592844689 592844937 1.100000e-91 348.0
92 TraesCS7B01G495400 chr3A 91.235 251 21 1 356 605 470832271 470832021 1.840000e-89 340.0
93 TraesCS7B01G495400 chr4D 91.566 249 20 1 356 603 341214575 341214823 5.130000e-90 342.0
94 TraesCS7B01G495400 chr4D 96.629 89 3 0 274 362 426582255 426582343 1.200000e-31 148.0
95 TraesCS7B01G495400 chr2A 90.763 249 22 1 356 603 262727586 262727834 1.110000e-86 331.0
96 TraesCS7B01G495400 chr2A 90.476 252 23 1 356 606 493563273 493563022 1.110000e-86 331.0
97 TraesCS7B01G495400 chr2B 87.241 290 35 2 1519 1807 781774156 781774444 3.990000e-86 329.0
98 TraesCS7B01G495400 chr2B 93.878 196 3 1 1 196 35013417 35013231 2.440000e-73 287.0
99 TraesCS7B01G495400 chr2B 95.556 90 4 0 273 362 542685434 542685345 1.550000e-30 145.0
100 TraesCS7B01G495400 chr6B 92.000 200 6 2 1 200 76029495 76029684 6.820000e-69 272.0
101 TraesCS7B01G495400 chr6B 96.970 33 1 0 4723 4755 41219599 41219567 7.480000e-04 56.5
102 TraesCS7B01G495400 chrUn 93.642 173 2 1 21 193 220229828 220229991 3.200000e-62 250.0
103 TraesCS7B01G495400 chrUn 91.613 155 3 2 1 155 318689091 318688947 7.020000e-49 206.0
104 TraesCS7B01G495400 chrUn 92.105 152 2 2 1 152 318693364 318693505 7.020000e-49 206.0
105 TraesCS7B01G495400 chrUn 92.105 152 2 2 1 152 331714959 331715100 7.020000e-49 206.0
106 TraesCS7B01G495400 chr6D 75.560 491 98 15 4867 5347 18174905 18174427 6.970000e-54 222.0
107 TraesCS7B01G495400 chr4B 90.265 113 8 3 256 366 159918504 159918615 1.550000e-30 145.0
108 TraesCS7B01G495400 chr4B 93.617 94 6 0 266 359 392446778 392446871 2.010000e-29 141.0
109 TraesCS7B01G495400 chr3B 94.565 92 5 0 274 365 249860971 249860880 5.580000e-30 143.0
110 TraesCS7B01G495400 chr3B 81.646 158 19 5 40 196 739351442 739351294 7.270000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G495400 chr7B 746487814 746493160 5346 False 9875.000000 9875 100.000000 1 5347 1 chr7B.!!$F4 5346
1 TraesCS7B01G495400 chr7B 746274066 746278158 4092 False 1504.500000 3044 96.865000 1117 4655 4 chr7B.!!$F6 3538
2 TraesCS7B01G495400 chr7B 744657599 744663821 6222 True 961.400000 2887 95.057000 948 4950 5 chr7B.!!$R4 4002
3 TraesCS7B01G495400 chr7B 718359070 718361162 2092 True 628.500000 833 87.564500 2729 4067 2 chr7B.!!$R3 1338
4 TraesCS7B01G495400 chr7B 253695584 253700122 4538 True 622.666667 857 85.537667 1974 4067 3 chr7B.!!$R1 2093
5 TraesCS7B01G495400 chr7B 707275823 707276588 765 True 284.000000 287 94.041500 1 193 2 chr7B.!!$R2 192
6 TraesCS7B01G495400 chr7D 633051535 633057519 5984 True 1202.216667 4311 93.820667 212 5347 6 chr7D.!!$R2 5135
7 TraesCS7B01G495400 chr7D 279739926 279744528 4602 False 637.000000 854 86.088667 1971 4067 3 chr7D.!!$F2 2096
8 TraesCS7B01G495400 chr7D 621644898 621647115 2217 False 629.000000 857 87.606500 2721 4067 2 chr7D.!!$F3 1346
9 TraesCS7B01G495400 chr7A 316016894 316022439 5545 True 642.000000 848 86.077333 1940 4067 3 chr7A.!!$R2 2127
10 TraesCS7B01G495400 chr7A 717085537 717089729 4192 False 590.000000 826 85.500667 2047 4067 3 chr7A.!!$F3 2020
11 TraesCS7B01G495400 chr1B 588513592 588514310 718 True 737.000000 737 85.402000 3339 4060 1 chr1B.!!$R1 721
12 TraesCS7B01G495400 chr1B 657405968 657409633 3665 False 575.000000 833 88.567000 2108 4060 3 chr1B.!!$F1 1952
13 TraesCS7B01G495400 chr1B 657414561 657417282 2721 False 474.000000 627 85.461000 3118 4067 3 chr1B.!!$F2 949
14 TraesCS7B01G495400 chr1D 472905810 472909306 3496 False 571.000000 824 88.189667 2096 4060 3 chr1D.!!$F1 1964
15 TraesCS7B01G495400 chr1D 435294766 435295269 503 True 488.000000 488 84.950000 1603 2083 1 chr1D.!!$R1 480
16 TraesCS7B01G495400 chr1D 435282836 435283472 636 True 316.500000 324 85.105500 3339 4060 2 chr1D.!!$R2 721
17 TraesCS7B01G495400 chr1D 472914173 472917179 3006 False 261.000000 291 87.198000 3118 4066 2 chr1D.!!$F2 948
18 TraesCS7B01G495400 chr1A 532806763 532807417 654 True 662.000000 662 85.845000 1445 2064 1 chr1A.!!$R3 619
19 TraesCS7B01G495400 chr1A 566638312 566639385 1073 False 539.000000 824 89.331500 3118 4060 2 chr1A.!!$F3 942
20 TraesCS7B01G495400 chr1A 566646564 566649290 2726 False 485.333333 627 85.759333 3118 4067 3 chr1A.!!$F4 949
21 TraesCS7B01G495400 chr5B 709422137 709424642 2505 False 301.000000 499 87.041333 1443 3310 3 chr5B.!!$F2 1867
22 TraesCS7B01G495400 chr5D 557182234 557183124 890 True 359.000000 372 82.274000 1452 2417 2 chr5D.!!$R1 965
23 TraesCS7B01G495400 chr4A 605665889 605666834 945 True 445.500000 451 84.936500 1452 2435 2 chr4A.!!$R3 983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.037232 CACCGACAAGGACTTCTCCC 60.037 60.000 0.0 0.0 45.00 4.30 F
915 916 0.450184 GAGACGAGTGAGGAGACTGC 59.550 60.000 0.0 0.0 44.43 4.40 F
916 917 1.135731 GACGAGTGAGGAGACTGCG 59.864 63.158 0.0 0.0 44.43 5.18 F
1708 1903 1.340248 GGAGACGAAGACACAACAGGA 59.660 52.381 0.0 0.0 0.00 3.86 F
2089 2342 1.517242 CTCTCAGCTTGCCGAAAAGT 58.483 50.000 0.0 0.0 0.00 2.66 F
2225 2508 2.371510 TGCCAGCCCTTTAATTGCTTTT 59.628 40.909 0.0 0.0 31.77 2.27 F
3703 9342 4.798574 CTTGAAGGACCAATACTTTGCAC 58.201 43.478 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1169 1176 1.079750 GCGAGAAAGCGGAGGAAGT 60.080 57.895 0.00 0.00 0.00 3.01 R
2113 2366 1.202698 ACAGTTGAGAGCTGACCAACC 60.203 52.381 14.96 3.05 40.57 3.77 R
2371 2668 4.093011 CTCATGAAGGGAGTATAGGAGGG 58.907 52.174 0.00 0.00 0.00 4.30 R
2611 2909 5.394115 GCCTTCCTACCATTTGTATTTGTGG 60.394 44.000 0.00 0.00 37.74 4.17 R
3928 11446 3.888460 TGGCTGCACTGGCTTCCA 61.888 61.111 0.50 0.00 41.91 3.53 R
4272 13922 1.541147 CAACAGTTGCCAACATCCGAT 59.459 47.619 10.69 0.00 0.00 4.18 R
4982 16673 0.983378 ACTAGGGTGGAGGACATGGC 60.983 60.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.661911 CGGACACCATCGGCAAAA 58.338 55.556 0.00 0.00 0.00 2.44
148 149 3.470888 CCGACGGGAATCAGGGCT 61.471 66.667 5.81 0.00 34.06 5.19
149 150 2.131709 CCGACGGGAATCAGGGCTA 61.132 63.158 5.81 0.00 34.06 3.93
150 151 1.472662 CCGACGGGAATCAGGGCTAT 61.473 60.000 5.81 0.00 34.06 2.97
151 152 0.319900 CGACGGGAATCAGGGCTATG 60.320 60.000 0.00 0.00 0.00 2.23
152 153 0.603975 GACGGGAATCAGGGCTATGC 60.604 60.000 0.00 0.00 0.00 3.14
185 186 3.782656 CCGTAGGCATAGGGGTTTATT 57.217 47.619 9.23 0.00 46.14 1.40
186 187 3.671716 CCGTAGGCATAGGGGTTTATTC 58.328 50.000 9.23 0.00 46.14 1.75
187 188 3.326880 CCGTAGGCATAGGGGTTTATTCT 59.673 47.826 9.23 0.00 46.14 2.40
188 189 4.315803 CGTAGGCATAGGGGTTTATTCTG 58.684 47.826 0.00 0.00 0.00 3.02
189 190 3.884037 AGGCATAGGGGTTTATTCTGG 57.116 47.619 0.00 0.00 0.00 3.86
190 191 3.131252 AGGCATAGGGGTTTATTCTGGT 58.869 45.455 0.00 0.00 0.00 4.00
191 192 4.312487 AGGCATAGGGGTTTATTCTGGTA 58.688 43.478 0.00 0.00 0.00 3.25
192 193 4.351111 AGGCATAGGGGTTTATTCTGGTAG 59.649 45.833 0.00 0.00 0.00 3.18
193 194 4.072839 GCATAGGGGTTTATTCTGGTAGC 58.927 47.826 0.00 0.00 0.00 3.58
194 195 4.315803 CATAGGGGTTTATTCTGGTAGCG 58.684 47.826 0.00 0.00 0.00 4.26
195 196 2.474112 AGGGGTTTATTCTGGTAGCGA 58.526 47.619 0.00 0.00 0.00 4.93
196 197 2.434702 AGGGGTTTATTCTGGTAGCGAG 59.565 50.000 0.00 0.00 0.00 5.03
197 198 2.169978 GGGGTTTATTCTGGTAGCGAGT 59.830 50.000 0.00 0.00 0.00 4.18
198 199 3.455327 GGGTTTATTCTGGTAGCGAGTC 58.545 50.000 0.00 0.00 0.00 3.36
199 200 3.118884 GGGTTTATTCTGGTAGCGAGTCA 60.119 47.826 0.00 0.00 0.00 3.41
200 201 3.864003 GGTTTATTCTGGTAGCGAGTCAC 59.136 47.826 0.00 0.00 0.00 3.67
201 202 3.795623 TTATTCTGGTAGCGAGTCACC 57.204 47.619 0.00 0.00 35.24 4.02
202 203 0.456221 ATTCTGGTAGCGAGTCACCG 59.544 55.000 0.00 0.00 37.66 4.94
203 204 0.607217 TTCTGGTAGCGAGTCACCGA 60.607 55.000 0.00 0.00 37.66 4.69
204 205 1.136984 CTGGTAGCGAGTCACCGAC 59.863 63.158 0.00 0.00 37.66 4.79
205 206 1.583495 CTGGTAGCGAGTCACCGACA 61.583 60.000 0.00 0.00 37.66 4.35
206 207 1.174078 TGGTAGCGAGTCACCGACAA 61.174 55.000 0.00 0.00 37.66 3.18
207 208 0.456312 GGTAGCGAGTCACCGACAAG 60.456 60.000 0.00 0.00 34.60 3.16
209 210 0.607217 TAGCGAGTCACCGACAAGGA 60.607 55.000 0.00 0.00 45.00 3.36
210 211 1.733399 GCGAGTCACCGACAAGGAC 60.733 63.158 0.00 0.00 45.00 3.85
211 212 1.957562 CGAGTCACCGACAAGGACT 59.042 57.895 0.00 0.00 45.00 3.85
212 213 0.314302 CGAGTCACCGACAAGGACTT 59.686 55.000 0.00 0.00 45.00 3.01
213 214 1.666311 CGAGTCACCGACAAGGACTTC 60.666 57.143 0.00 0.00 45.00 3.01
214 215 1.614413 GAGTCACCGACAAGGACTTCT 59.386 52.381 0.00 0.00 45.00 2.85
215 216 1.614413 AGTCACCGACAAGGACTTCTC 59.386 52.381 0.00 0.00 45.00 2.87
216 217 0.966920 TCACCGACAAGGACTTCTCC 59.033 55.000 0.00 0.00 45.00 3.71
217 218 0.037232 CACCGACAAGGACTTCTCCC 60.037 60.000 0.00 0.00 45.00 4.30
218 219 1.192803 ACCGACAAGGACTTCTCCCC 61.193 60.000 0.00 0.00 45.00 4.81
219 220 1.215647 CGACAAGGACTTCTCCCCG 59.784 63.158 0.00 0.00 37.25 5.73
220 221 1.597461 GACAAGGACTTCTCCCCGG 59.403 63.158 0.00 0.00 37.25 5.73
221 222 2.269241 CAAGGACTTCTCCCCGGC 59.731 66.667 0.00 0.00 37.25 6.13
222 223 3.009714 AAGGACTTCTCCCCGGCC 61.010 66.667 0.00 0.00 37.25 6.13
280 281 1.361543 TGGACTAGCCAAGTACTCCCT 59.638 52.381 0.00 0.00 45.87 4.20
281 282 2.033372 GGACTAGCCAAGTACTCCCTC 58.967 57.143 0.00 0.00 39.07 4.30
284 285 2.022918 ACTAGCCAAGTACTCCCTCCAT 60.023 50.000 0.00 0.00 36.36 3.41
287 288 2.239907 AGCCAAGTACTCCCTCCATTTC 59.760 50.000 0.00 0.00 0.00 2.17
288 289 2.026262 GCCAAGTACTCCCTCCATTTCA 60.026 50.000 0.00 0.00 0.00 2.69
289 290 3.561313 GCCAAGTACTCCCTCCATTTCAA 60.561 47.826 0.00 0.00 0.00 2.69
290 291 4.662278 CCAAGTACTCCCTCCATTTCAAA 58.338 43.478 0.00 0.00 0.00 2.69
291 292 5.076873 CCAAGTACTCCCTCCATTTCAAAA 58.923 41.667 0.00 0.00 0.00 2.44
292 293 5.048013 CCAAGTACTCCCTCCATTTCAAAAC 60.048 44.000 0.00 0.00 0.00 2.43
293 294 5.319043 AGTACTCCCTCCATTTCAAAACA 57.681 39.130 0.00 0.00 0.00 2.83
294 295 5.316987 AGTACTCCCTCCATTTCAAAACAG 58.683 41.667 0.00 0.00 0.00 3.16
295 296 4.453480 ACTCCCTCCATTTCAAAACAGA 57.547 40.909 0.00 0.00 0.00 3.41
296 297 5.003096 ACTCCCTCCATTTCAAAACAGAT 57.997 39.130 0.00 0.00 0.00 2.90
297 298 4.768968 ACTCCCTCCATTTCAAAACAGATG 59.231 41.667 0.00 0.00 0.00 2.90
298 299 4.996793 TCCCTCCATTTCAAAACAGATGA 58.003 39.130 0.00 0.00 0.00 2.92
299 300 4.766891 TCCCTCCATTTCAAAACAGATGAC 59.233 41.667 0.00 0.00 0.00 3.06
300 301 4.768968 CCCTCCATTTCAAAACAGATGACT 59.231 41.667 0.00 0.00 0.00 3.41
301 302 5.105997 CCCTCCATTTCAAAACAGATGACTC 60.106 44.000 0.00 0.00 0.00 3.36
302 303 5.474532 CCTCCATTTCAAAACAGATGACTCA 59.525 40.000 0.00 0.00 0.00 3.41
303 304 6.016024 CCTCCATTTCAAAACAGATGACTCAA 60.016 38.462 0.00 0.00 0.00 3.02
304 305 6.738114 TCCATTTCAAAACAGATGACTCAAC 58.262 36.000 0.00 0.00 0.00 3.18
305 306 5.922544 CCATTTCAAAACAGATGACTCAACC 59.077 40.000 0.00 0.00 0.00 3.77
306 307 6.239120 CCATTTCAAAACAGATGACTCAACCT 60.239 38.462 0.00 0.00 0.00 3.50
307 308 6.773976 TTTCAAAACAGATGACTCAACCTT 57.226 33.333 0.00 0.00 0.00 3.50
308 309 5.756195 TCAAAACAGATGACTCAACCTTG 57.244 39.130 0.00 0.00 0.00 3.61
309 310 5.192927 TCAAAACAGATGACTCAACCTTGT 58.807 37.500 0.00 0.00 0.00 3.16
310 311 6.353323 TCAAAACAGATGACTCAACCTTGTA 58.647 36.000 0.00 0.00 0.00 2.41
311 312 6.260050 TCAAAACAGATGACTCAACCTTGTAC 59.740 38.462 0.00 0.00 0.00 2.90
312 313 5.552870 AACAGATGACTCAACCTTGTACT 57.447 39.130 0.00 0.00 0.00 2.73
313 314 6.665992 AACAGATGACTCAACCTTGTACTA 57.334 37.500 0.00 0.00 0.00 1.82
314 315 6.665992 ACAGATGACTCAACCTTGTACTAA 57.334 37.500 0.00 0.00 0.00 2.24
315 316 6.456501 ACAGATGACTCAACCTTGTACTAAC 58.543 40.000 0.00 0.00 0.00 2.34
316 317 6.267928 ACAGATGACTCAACCTTGTACTAACT 59.732 38.462 0.00 0.00 0.00 2.24
317 318 7.155328 CAGATGACTCAACCTTGTACTAACTT 58.845 38.462 0.00 0.00 0.00 2.66
318 319 7.657761 CAGATGACTCAACCTTGTACTAACTTT 59.342 37.037 0.00 0.00 0.00 2.66
319 320 8.867097 AGATGACTCAACCTTGTACTAACTTTA 58.133 33.333 0.00 0.00 0.00 1.85
320 321 9.141400 GATGACTCAACCTTGTACTAACTTTAG 57.859 37.037 0.00 0.00 36.82 1.85
321 322 8.015185 TGACTCAACCTTGTACTAACTTTAGT 57.985 34.615 6.85 6.85 45.39 2.24
322 323 9.135189 TGACTCAACCTTGTACTAACTTTAGTA 57.865 33.333 4.98 4.98 43.36 1.82
345 346 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
346 347 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
347 348 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
348 349 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
349 350 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
350 351 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
351 352 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
352 353 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
353 354 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
354 355 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
355 356 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
356 357 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
357 358 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
358 359 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
359 360 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
360 361 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
361 362 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
362 363 2.905415 TGGAACGGAGGGAGTAGTAA 57.095 50.000 0.00 0.00 0.00 2.24
363 364 2.450476 TGGAACGGAGGGAGTAGTAAC 58.550 52.381 0.00 0.00 0.00 2.50
364 365 2.225091 TGGAACGGAGGGAGTAGTAACA 60.225 50.000 0.00 0.00 0.00 2.41
365 366 3.029570 GGAACGGAGGGAGTAGTAACAT 58.970 50.000 0.00 0.00 0.00 2.71
366 367 3.181478 GGAACGGAGGGAGTAGTAACATG 60.181 52.174 0.00 0.00 0.00 3.21
367 368 1.755380 ACGGAGGGAGTAGTAACATGC 59.245 52.381 0.00 0.00 0.00 4.06
368 369 1.754803 CGGAGGGAGTAGTAACATGCA 59.245 52.381 0.00 0.00 0.00 3.96
369 370 2.481449 CGGAGGGAGTAGTAACATGCAC 60.481 54.545 0.00 0.00 0.00 4.57
370 371 2.766828 GGAGGGAGTAGTAACATGCACT 59.233 50.000 5.91 5.91 0.00 4.40
371 372 3.197983 GGAGGGAGTAGTAACATGCACTT 59.802 47.826 5.93 0.00 0.00 3.16
372 373 4.184629 GAGGGAGTAGTAACATGCACTTG 58.815 47.826 5.93 0.00 0.00 3.16
373 374 3.055094 AGGGAGTAGTAACATGCACTTGG 60.055 47.826 5.93 0.00 0.00 3.61
374 375 3.270877 GGAGTAGTAACATGCACTTGGG 58.729 50.000 5.93 0.00 0.00 4.12
375 376 3.055385 GGAGTAGTAACATGCACTTGGGA 60.055 47.826 5.93 0.00 0.00 4.37
376 377 3.933332 GAGTAGTAACATGCACTTGGGAC 59.067 47.826 5.93 0.00 0.00 4.46
377 378 3.583086 AGTAGTAACATGCACTTGGGACT 59.417 43.478 5.93 0.00 0.00 3.85
378 379 3.059352 AGTAACATGCACTTGGGACTC 57.941 47.619 0.00 0.00 0.00 3.36
379 380 2.371841 AGTAACATGCACTTGGGACTCA 59.628 45.455 0.00 0.00 0.00 3.41
380 381 1.609208 AACATGCACTTGGGACTCAC 58.391 50.000 0.00 0.00 0.00 3.51
381 382 0.473755 ACATGCACTTGGGACTCACA 59.526 50.000 0.00 0.00 0.00 3.58
382 383 1.133823 ACATGCACTTGGGACTCACAA 60.134 47.619 0.00 0.00 0.00 3.33
383 384 1.955778 CATGCACTTGGGACTCACAAA 59.044 47.619 0.00 0.00 0.00 2.83
384 385 1.388547 TGCACTTGGGACTCACAAAC 58.611 50.000 0.00 0.00 0.00 2.93
385 386 1.340502 TGCACTTGGGACTCACAAACA 60.341 47.619 0.00 0.00 0.00 2.83
386 387 1.956477 GCACTTGGGACTCACAAACAT 59.044 47.619 0.00 0.00 0.00 2.71
387 388 2.287788 GCACTTGGGACTCACAAACATG 60.288 50.000 0.00 0.00 0.00 3.21
388 389 1.956477 ACTTGGGACTCACAAACATGC 59.044 47.619 0.00 0.00 0.00 4.06
389 390 2.233271 CTTGGGACTCACAAACATGCT 58.767 47.619 0.00 0.00 0.00 3.79
390 391 2.363306 TGGGACTCACAAACATGCTT 57.637 45.000 0.00 0.00 0.00 3.91
391 392 3.500448 TGGGACTCACAAACATGCTTA 57.500 42.857 0.00 0.00 0.00 3.09
392 393 4.032960 TGGGACTCACAAACATGCTTAT 57.967 40.909 0.00 0.00 0.00 1.73
393 394 3.758023 TGGGACTCACAAACATGCTTATG 59.242 43.478 0.00 0.00 0.00 1.90
394 395 3.758554 GGGACTCACAAACATGCTTATGT 59.241 43.478 0.00 0.00 36.10 2.29
395 396 4.379813 GGGACTCACAAACATGCTTATGTG 60.380 45.833 12.13 12.13 43.42 3.21
396 397 4.379813 GGACTCACAAACATGCTTATGTGG 60.380 45.833 16.08 11.33 42.56 4.17
397 398 3.057315 ACTCACAAACATGCTTATGTGGC 60.057 43.478 16.08 0.00 42.56 5.01
398 399 2.889678 TCACAAACATGCTTATGTGGCA 59.110 40.909 16.08 0.00 42.56 4.92
399 400 3.320256 TCACAAACATGCTTATGTGGCAA 59.680 39.130 16.08 1.00 42.56 4.52
400 401 4.021280 TCACAAACATGCTTATGTGGCAAT 60.021 37.500 16.08 0.00 42.56 3.56
401 402 4.327898 CACAAACATGCTTATGTGGCAATC 59.672 41.667 11.02 0.00 43.14 2.67
402 403 4.021280 ACAAACATGCTTATGTGGCAATCA 60.021 37.500 0.00 0.00 43.14 2.57
403 404 4.804868 AACATGCTTATGTGGCAATCAA 57.195 36.364 0.00 0.00 43.14 2.57
404 405 5.347620 AACATGCTTATGTGGCAATCAAT 57.652 34.783 0.00 0.00 43.14 2.57
405 406 5.347620 ACATGCTTATGTGGCAATCAATT 57.652 34.783 0.00 0.00 43.14 2.32
406 407 6.468333 ACATGCTTATGTGGCAATCAATTA 57.532 33.333 0.00 0.00 43.14 1.40
407 408 6.876155 ACATGCTTATGTGGCAATCAATTAA 58.124 32.000 0.00 0.00 43.14 1.40
408 409 7.329499 ACATGCTTATGTGGCAATCAATTAAA 58.671 30.769 0.00 0.00 43.14 1.52
409 410 7.493320 ACATGCTTATGTGGCAATCAATTAAAG 59.507 33.333 0.00 0.00 43.14 1.85
410 411 7.167924 TGCTTATGTGGCAATCAATTAAAGA 57.832 32.000 0.00 0.00 36.71 2.52
411 412 7.609960 TGCTTATGTGGCAATCAATTAAAGAA 58.390 30.769 0.00 0.00 36.71 2.52
412 413 8.093307 TGCTTATGTGGCAATCAATTAAAGAAA 58.907 29.630 0.00 0.00 36.71 2.52
413 414 8.934825 GCTTATGTGGCAATCAATTAAAGAAAA 58.065 29.630 0.00 0.00 0.00 2.29
416 417 8.767478 ATGTGGCAATCAATTAAAGAAAAGAG 57.233 30.769 0.00 0.00 0.00 2.85
417 418 7.950512 TGTGGCAATCAATTAAAGAAAAGAGA 58.049 30.769 0.00 0.00 0.00 3.10
418 419 7.867403 TGTGGCAATCAATTAAAGAAAAGAGAC 59.133 33.333 0.00 0.00 0.00 3.36
419 420 7.867403 GTGGCAATCAATTAAAGAAAAGAGACA 59.133 33.333 0.00 0.00 0.00 3.41
420 421 8.587608 TGGCAATCAATTAAAGAAAAGAGACAT 58.412 29.630 0.00 0.00 0.00 3.06
421 422 8.866956 GGCAATCAATTAAAGAAAAGAGACATG 58.133 33.333 0.00 0.00 0.00 3.21
422 423 8.866956 GCAATCAATTAAAGAAAAGAGACATGG 58.133 33.333 0.00 0.00 0.00 3.66
423 424 9.918630 CAATCAATTAAAGAAAAGAGACATGGT 57.081 29.630 0.00 0.00 0.00 3.55
446 447 9.066892 TGGTTATAGTAACATAAGTAGGTACCG 57.933 37.037 6.18 0.00 0.00 4.02
447 448 9.067986 GGTTATAGTAACATAAGTAGGTACCGT 57.932 37.037 6.18 0.00 0.00 4.83
451 452 9.853177 ATAGTAACATAAGTAGGTACCGTAACT 57.147 33.333 6.18 8.93 0.00 2.24
453 454 9.681062 AGTAACATAAGTAGGTACCGTAACTAA 57.319 33.333 15.27 0.00 28.05 2.24
465 466 9.264719 AGGTACCGTAACTAATAAATGTTATGC 57.735 33.333 6.18 0.00 35.50 3.14
466 467 9.264719 GGTACCGTAACTAATAAATGTTATGCT 57.735 33.333 0.00 0.00 35.50 3.79
484 485 9.669887 TGTTATGCTATTATATGTCATGCATGA 57.330 29.630 25.42 25.42 39.53 3.07
500 501 8.692110 TCATGCATGACAATAAATGAGAAAAC 57.308 30.769 25.42 0.00 0.00 2.43
501 502 7.760794 TCATGCATGACAATAAATGAGAAAACC 59.239 33.333 25.42 0.00 0.00 3.27
502 503 7.230849 TGCATGACAATAAATGAGAAAACCT 57.769 32.000 0.00 0.00 0.00 3.50
503 504 8.347004 TGCATGACAATAAATGAGAAAACCTA 57.653 30.769 0.00 0.00 0.00 3.08
504 505 8.970020 TGCATGACAATAAATGAGAAAACCTAT 58.030 29.630 0.00 0.00 0.00 2.57
505 506 9.241317 GCATGACAATAAATGAGAAAACCTATG 57.759 33.333 0.00 0.00 0.00 2.23
530 531 9.938280 TGTTACTAATCTTTGTTACTATGCACT 57.062 29.630 0.00 0.00 0.00 4.40
538 539 9.618890 ATCTTTGTTACTATGCACTATGAATGT 57.381 29.630 0.00 0.00 0.00 2.71
541 542 9.884636 TTTGTTACTATGCACTATGAATGTAGT 57.115 29.630 0.00 0.00 35.34 2.73
598 599 8.615705 AGTATATGATACTCTCCACTATGACCA 58.384 37.037 0.00 0.00 0.00 4.02
599 600 7.953005 ATATGATACTCTCCACTATGACCAG 57.047 40.000 0.00 0.00 0.00 4.00
600 601 3.891977 TGATACTCTCCACTATGACCAGC 59.108 47.826 0.00 0.00 0.00 4.85
601 602 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
602 603 1.007721 ACTCTCCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
603 604 2.114616 CTCTCCACTATGACCAGCCTT 58.885 52.381 0.00 0.00 0.00 4.35
604 605 3.300388 CTCTCCACTATGACCAGCCTTA 58.700 50.000 0.00 0.00 0.00 2.69
605 606 3.706594 CTCTCCACTATGACCAGCCTTAA 59.293 47.826 0.00 0.00 0.00 1.85
606 607 3.451178 TCTCCACTATGACCAGCCTTAAC 59.549 47.826 0.00 0.00 0.00 2.01
607 608 3.178046 TCCACTATGACCAGCCTTAACA 58.822 45.455 0.00 0.00 0.00 2.41
608 609 3.585289 TCCACTATGACCAGCCTTAACAA 59.415 43.478 0.00 0.00 0.00 2.83
609 610 4.227300 TCCACTATGACCAGCCTTAACAAT 59.773 41.667 0.00 0.00 0.00 2.71
610 611 4.949856 CCACTATGACCAGCCTTAACAATT 59.050 41.667 0.00 0.00 0.00 2.32
611 612 5.163622 CCACTATGACCAGCCTTAACAATTG 60.164 44.000 3.24 3.24 0.00 2.32
612 613 5.415701 CACTATGACCAGCCTTAACAATTGT 59.584 40.000 4.92 4.92 0.00 2.71
613 614 5.648092 ACTATGACCAGCCTTAACAATTGTC 59.352 40.000 12.39 0.00 0.00 3.18
773 774 8.662369 CGTATTCGGAGAAAAGATATACAGAG 57.338 38.462 0.00 0.00 45.90 3.35
793 794 8.324163 ACAGAGTATTCTTTTAGCGTGAAAAT 57.676 30.769 0.00 0.00 0.00 1.82
794 795 8.230486 ACAGAGTATTCTTTTAGCGTGAAAATG 58.770 33.333 0.00 0.00 0.00 2.32
795 796 7.693951 CAGAGTATTCTTTTAGCGTGAAAATGG 59.306 37.037 0.00 0.00 0.00 3.16
796 797 7.606456 AGAGTATTCTTTTAGCGTGAAAATGGA 59.394 33.333 0.00 0.00 0.00 3.41
797 798 7.752695 AGTATTCTTTTAGCGTGAAAATGGAG 58.247 34.615 0.00 0.00 0.00 3.86
798 799 6.817765 ATTCTTTTAGCGTGAAAATGGAGA 57.182 33.333 0.00 0.00 0.00 3.71
799 800 6.817765 TTCTTTTAGCGTGAAAATGGAGAT 57.182 33.333 0.00 0.00 0.00 2.75
800 801 7.915293 TTCTTTTAGCGTGAAAATGGAGATA 57.085 32.000 0.00 0.00 0.00 1.98
801 802 8.506168 TTCTTTTAGCGTGAAAATGGAGATAT 57.494 30.769 0.00 0.00 0.00 1.63
802 803 9.607988 TTCTTTTAGCGTGAAAATGGAGATATA 57.392 29.630 0.00 0.00 0.00 0.86
803 804 9.261180 TCTTTTAGCGTGAAAATGGAGATATAG 57.739 33.333 0.00 0.00 0.00 1.31
844 845 3.559242 GGAATCAATTGAAGGCGAGAGAG 59.441 47.826 13.09 0.00 0.00 3.20
845 846 4.437239 GAATCAATTGAAGGCGAGAGAGA 58.563 43.478 13.09 0.00 0.00 3.10
846 847 3.516981 TCAATTGAAGGCGAGAGAGAG 57.483 47.619 5.45 0.00 0.00 3.20
847 848 3.092301 TCAATTGAAGGCGAGAGAGAGA 58.908 45.455 5.45 0.00 0.00 3.10
848 849 3.130164 TCAATTGAAGGCGAGAGAGAGAG 59.870 47.826 5.45 0.00 0.00 3.20
849 850 2.498644 TTGAAGGCGAGAGAGAGAGA 57.501 50.000 0.00 0.00 0.00 3.10
850 851 2.036958 TGAAGGCGAGAGAGAGAGAG 57.963 55.000 0.00 0.00 0.00 3.20
851 852 1.557371 TGAAGGCGAGAGAGAGAGAGA 59.443 52.381 0.00 0.00 0.00 3.10
852 853 2.213499 GAAGGCGAGAGAGAGAGAGAG 58.787 57.143 0.00 0.00 0.00 3.20
853 854 1.496060 AGGCGAGAGAGAGAGAGAGA 58.504 55.000 0.00 0.00 0.00 3.10
854 855 1.414181 AGGCGAGAGAGAGAGAGAGAG 59.586 57.143 0.00 0.00 0.00 3.20
855 856 1.412710 GGCGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
856 857 2.546795 GGCGAGAGAGAGAGAGAGAGAG 60.547 59.091 0.00 0.00 0.00 3.20
857 858 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
858 859 3.551863 GCGAGAGAGAGAGAGAGAGAGAG 60.552 56.522 0.00 0.00 0.00 3.20
859 860 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
860 861 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
861 862 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
862 863 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
863 864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
864 865 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
865 866 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
866 867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
867 868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
868 869 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
869 870 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
870 871 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
871 872 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
872 873 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
873 874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
874 875 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
875 876 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
876 877 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
877 878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
878 879 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
879 880 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
880 881 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
881 882 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
882 883 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
883 884 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
884 885 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
885 886 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
899 900 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
900 901 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
904 905 3.366396 AGAGAGAGAGAGAGAGACGAGT 58.634 50.000 0.00 0.00 0.00 4.18
911 912 2.167693 GAGAGAGAGACGAGTGAGGAGA 59.832 54.545 0.00 0.00 0.00 3.71
915 916 0.450184 GAGACGAGTGAGGAGACTGC 59.550 60.000 0.00 0.00 44.43 4.40
916 917 1.135731 GACGAGTGAGGAGACTGCG 59.864 63.158 0.00 0.00 44.43 5.18
917 918 2.259875 GACGAGTGAGGAGACTGCGG 62.260 65.000 0.00 0.00 44.43 5.69
918 919 2.183046 GAGTGAGGAGACTGCGGC 59.817 66.667 0.00 0.00 44.43 6.53
920 921 4.803426 GTGAGGAGACTGCGGCGG 62.803 72.222 9.78 7.39 44.43 6.13
922 923 4.500116 GAGGAGACTGCGGCGGTC 62.500 72.222 29.91 29.91 44.43 4.79
925 926 4.803426 GAGACTGCGGCGGTCCAG 62.803 72.222 32.37 10.37 40.33 3.86
1101 1108 1.535685 GCCAATCTGGATCCAGCCT 59.464 57.895 33.39 21.25 40.96 4.58
1169 1176 4.083537 CGATTTGGTTTCGTCTGATTTCCA 60.084 41.667 0.00 0.00 32.08 3.53
1360 1368 2.551459 GGATCTATGATGCAGCAACCAC 59.449 50.000 9.54 0.00 0.00 4.16
1513 1703 7.434897 TGTGTTTTGCTGTTTAGATGACATTTC 59.565 33.333 0.00 0.00 0.00 2.17
1663 1858 3.118371 ACCCAGTCTGATTATTTCCGGAC 60.118 47.826 1.83 0.00 0.00 4.79
1708 1903 1.340248 GGAGACGAAGACACAACAGGA 59.660 52.381 0.00 0.00 0.00 3.86
1877 2089 3.092301 AGTTCTTTTGGCAGCTTATCCC 58.908 45.455 0.00 0.00 0.00 3.85
1993 2229 4.597079 CAATGCTGCGACCGTTAATTTAT 58.403 39.130 0.00 0.00 0.00 1.40
1994 2230 3.666883 TGCTGCGACCGTTAATTTATG 57.333 42.857 0.00 0.00 0.00 1.90
2089 2342 1.517242 CTCTCAGCTTGCCGAAAAGT 58.483 50.000 0.00 0.00 0.00 2.66
2113 2366 9.095065 AGTAACTAACCATTAGCTGTTAAATCG 57.905 33.333 0.00 0.00 36.71 3.34
2225 2508 2.371510 TGCCAGCCCTTTAATTGCTTTT 59.628 40.909 0.00 0.00 31.77 2.27
2371 2668 6.433093 ACACATATGGTACCTTTTCTGAAACC 59.567 38.462 14.36 1.84 0.00 3.27
2372 2669 5.949952 ACATATGGTACCTTTTCTGAAACCC 59.050 40.000 14.36 0.00 0.00 4.11
2611 2909 6.261826 AGGCACTTCACAAGATATTTATGCTC 59.738 38.462 0.00 0.00 27.25 4.26
3703 9342 4.798574 CTTGAAGGACCAATACTTTGCAC 58.201 43.478 0.00 0.00 0.00 4.57
4156 13805 8.995027 TCCTAATATTTGGAAAGCACATGTAT 57.005 30.769 15.19 0.00 0.00 2.29
4315 13965 2.819608 TGGCTACCTTGCATTTTCACTC 59.180 45.455 0.00 0.00 34.04 3.51
4322 13972 3.365820 CCTTGCATTTTCACTCGCATTTC 59.634 43.478 0.00 0.00 33.71 2.17
4409 14059 5.068329 CAGTATGTATGCTCAGAAGAGTGGA 59.932 44.000 0.00 0.00 44.00 4.02
4462 14124 1.401539 GCATGGTTGCTCGGAAAGTTC 60.402 52.381 0.00 0.00 45.77 3.01
4682 15779 5.422145 GAATTTTGGAGGATTTGACCCATG 58.578 41.667 0.00 0.00 0.00 3.66
4686 15783 2.025037 TGGAGGATTTGACCCATGGAAG 60.025 50.000 15.22 0.00 0.00 3.46
4791 15889 4.402155 TGTTTGCCTGTCTGTTGAAATTCT 59.598 37.500 0.00 0.00 0.00 2.40
4794 15892 4.067896 TGCCTGTCTGTTGAAATTCTCTC 58.932 43.478 0.00 0.00 0.00 3.20
4795 15893 4.202398 TGCCTGTCTGTTGAAATTCTCTCT 60.202 41.667 0.00 0.00 0.00 3.10
4796 15894 4.391523 GCCTGTCTGTTGAAATTCTCTCTC 59.608 45.833 0.00 0.00 0.00 3.20
4797 15895 5.792741 CCTGTCTGTTGAAATTCTCTCTCT 58.207 41.667 0.00 0.00 0.00 3.10
4798 15896 5.868801 CCTGTCTGTTGAAATTCTCTCTCTC 59.131 44.000 0.00 0.00 0.00 3.20
4799 15897 6.410942 TGTCTGTTGAAATTCTCTCTCTCA 57.589 37.500 0.00 0.00 0.00 3.27
4805 16143 6.183360 TGTTGAAATTCTCTCTCTCACACTCA 60.183 38.462 0.00 0.00 0.00 3.41
4806 16144 5.777802 TGAAATTCTCTCTCTCACACTCAC 58.222 41.667 0.00 0.00 0.00 3.51
4812 16150 3.935203 CTCTCTCTCACACTCACTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
4822 16160 0.923358 TCACTCTCTCTCTCCCTCCC 59.077 60.000 0.00 0.00 0.00 4.30
4824 16162 1.133792 CACTCTCTCTCTCCCTCCCTC 60.134 61.905 0.00 0.00 0.00 4.30
4826 16164 0.923358 TCTCTCTCTCCCTCCCTCAC 59.077 60.000 0.00 0.00 0.00 3.51
4828 16166 0.923358 TCTCTCTCCCTCCCTCACTC 59.077 60.000 0.00 0.00 0.00 3.51
4829 16167 0.106217 CTCTCTCCCTCCCTCACTCC 60.106 65.000 0.00 0.00 0.00 3.85
4837 16289 2.041405 CCCTCACTCCCTCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
4839 16291 2.041405 CTCACTCCCTCCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
4931 16622 3.648545 GGTATACAGAGCCTCCTTCCATT 59.351 47.826 5.01 0.00 0.00 3.16
4952 16643 2.019156 GCATCTAGCAAACCCCTCACC 61.019 57.143 0.00 0.00 44.79 4.02
4956 16647 1.073923 CTAGCAAACCCCTCACCACTT 59.926 52.381 0.00 0.00 0.00 3.16
4977 16668 3.955471 TCAGCCTTTATCTTCCACCTTG 58.045 45.455 0.00 0.00 0.00 3.61
4982 16673 2.691409 TTATCTTCCACCTTGAGCCG 57.309 50.000 0.00 0.00 0.00 5.52
5009 16703 1.689892 CCTCCACCCTAGTCTCTTCCC 60.690 61.905 0.00 0.00 0.00 3.97
5024 16718 0.254747 TTCCCCTGGCCTCAATTACG 59.745 55.000 3.32 0.00 0.00 3.18
5035 16729 3.625764 GCCTCAATTACGCCACATCTTAA 59.374 43.478 0.00 0.00 0.00 1.85
5058 16752 2.673368 CTCTCAACCGAACCAACTATGC 59.327 50.000 0.00 0.00 0.00 3.14
5061 16755 0.323087 AACCGAACCAACTATGCCCC 60.323 55.000 0.00 0.00 0.00 5.80
5064 16758 1.024271 CGAACCAACTATGCCCCATG 58.976 55.000 0.00 0.00 0.00 3.66
5117 16811 2.119495 CTGGGCTACTTGGGTACATCT 58.881 52.381 0.00 0.00 0.00 2.90
5130 16824 4.968719 TGGGTACATCTATCAATCCACACT 59.031 41.667 0.00 0.00 0.00 3.55
5131 16825 6.140377 TGGGTACATCTATCAATCCACACTA 58.860 40.000 0.00 0.00 0.00 2.74
5157 16851 2.086869 CACCAAGACCATCATGACCAC 58.913 52.381 0.00 0.00 0.00 4.16
5165 16859 1.066215 CCATCATGACCACGAACTCCA 60.066 52.381 0.00 0.00 0.00 3.86
5166 16860 2.420547 CCATCATGACCACGAACTCCAT 60.421 50.000 0.00 0.00 0.00 3.41
5208 16902 4.109675 CCCCGCCTACAACCCCTG 62.110 72.222 0.00 0.00 0.00 4.45
5212 16906 2.272471 GCCTACAACCCCTGGCTC 59.728 66.667 0.00 0.00 41.92 4.70
5248 16942 1.860240 ACTGTGGCCTATCTCCTCCTA 59.140 52.381 3.32 0.00 0.00 2.94
5311 17005 4.934797 AAAATCCCTTGAGATCTGGTCA 57.065 40.909 0.00 0.00 0.00 4.02
5340 17034 0.951558 AACATATTCGCCGCCCAATC 59.048 50.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.215647 CGTCGGGATAGGCCTATGC 59.784 63.158 30.73 30.73 36.66 3.14
119 120 1.890894 CCGTCGGGATAGGCCTATG 59.109 63.158 30.20 15.58 36.66 2.23
120 121 4.436368 CCGTCGGGATAGGCCTAT 57.564 61.111 25.72 25.72 36.66 2.57
165 166 3.326880 AGAATAAACCCCTATGCCTACGG 59.673 47.826 0.00 0.00 0.00 4.02
166 167 4.315803 CAGAATAAACCCCTATGCCTACG 58.684 47.826 0.00 0.00 0.00 3.51
167 168 4.104261 ACCAGAATAAACCCCTATGCCTAC 59.896 45.833 0.00 0.00 0.00 3.18
168 169 4.312487 ACCAGAATAAACCCCTATGCCTA 58.688 43.478 0.00 0.00 0.00 3.93
169 170 3.131252 ACCAGAATAAACCCCTATGCCT 58.869 45.455 0.00 0.00 0.00 4.75
170 171 3.595190 ACCAGAATAAACCCCTATGCC 57.405 47.619 0.00 0.00 0.00 4.40
171 172 4.072839 GCTACCAGAATAAACCCCTATGC 58.927 47.826 0.00 0.00 0.00 3.14
172 173 4.039973 TCGCTACCAGAATAAACCCCTATG 59.960 45.833 0.00 0.00 0.00 2.23
173 174 4.228824 TCGCTACCAGAATAAACCCCTAT 58.771 43.478 0.00 0.00 0.00 2.57
174 175 3.640029 CTCGCTACCAGAATAAACCCCTA 59.360 47.826 0.00 0.00 0.00 3.53
175 176 2.434702 CTCGCTACCAGAATAAACCCCT 59.565 50.000 0.00 0.00 0.00 4.79
176 177 2.169978 ACTCGCTACCAGAATAAACCCC 59.830 50.000 0.00 0.00 0.00 4.95
177 178 3.118884 TGACTCGCTACCAGAATAAACCC 60.119 47.826 0.00 0.00 0.00 4.11
178 179 3.864003 GTGACTCGCTACCAGAATAAACC 59.136 47.826 0.00 0.00 0.00 3.27
179 180 3.864003 GGTGACTCGCTACCAGAATAAAC 59.136 47.826 0.00 0.00 36.94 2.01
180 181 3.428452 CGGTGACTCGCTACCAGAATAAA 60.428 47.826 0.00 0.00 36.76 1.40
181 182 2.098607 CGGTGACTCGCTACCAGAATAA 59.901 50.000 0.00 0.00 36.76 1.40
182 183 1.674441 CGGTGACTCGCTACCAGAATA 59.326 52.381 0.00 0.00 36.76 1.75
183 184 0.456221 CGGTGACTCGCTACCAGAAT 59.544 55.000 0.00 0.00 36.76 2.40
184 185 0.607217 TCGGTGACTCGCTACCAGAA 60.607 55.000 0.00 0.00 36.76 3.02
185 186 1.002990 TCGGTGACTCGCTACCAGA 60.003 57.895 0.00 0.00 36.76 3.86
186 187 1.136984 GTCGGTGACTCGCTACCAG 59.863 63.158 0.00 0.00 36.76 4.00
187 188 1.174078 TTGTCGGTGACTCGCTACCA 61.174 55.000 0.00 0.00 36.76 3.25
188 189 0.456312 CTTGTCGGTGACTCGCTACC 60.456 60.000 0.00 0.00 33.15 3.18
189 190 0.456312 CCTTGTCGGTGACTCGCTAC 60.456 60.000 0.00 0.00 33.15 3.58
190 191 0.607217 TCCTTGTCGGTGACTCGCTA 60.607 55.000 0.00 0.00 33.15 4.26
191 192 1.901948 TCCTTGTCGGTGACTCGCT 60.902 57.895 0.00 0.00 33.15 4.93
192 193 1.733399 GTCCTTGTCGGTGACTCGC 60.733 63.158 0.00 0.00 33.15 5.03
193 194 0.314302 AAGTCCTTGTCGGTGACTCG 59.686 55.000 0.00 0.00 38.36 4.18
194 195 1.614413 AGAAGTCCTTGTCGGTGACTC 59.386 52.381 0.00 0.00 38.36 3.36
195 196 1.614413 GAGAAGTCCTTGTCGGTGACT 59.386 52.381 0.00 0.00 40.94 3.41
196 197 1.336980 GGAGAAGTCCTTGTCGGTGAC 60.337 57.143 0.00 0.00 40.17 3.67
197 198 0.966920 GGAGAAGTCCTTGTCGGTGA 59.033 55.000 0.00 0.00 40.17 4.02
198 199 0.037232 GGGAGAAGTCCTTGTCGGTG 60.037 60.000 0.00 0.00 43.36 4.94
199 200 1.192803 GGGGAGAAGTCCTTGTCGGT 61.193 60.000 0.00 0.00 43.36 4.69
200 201 1.597461 GGGGAGAAGTCCTTGTCGG 59.403 63.158 0.00 0.00 43.36 4.79
201 202 1.215647 CGGGGAGAAGTCCTTGTCG 59.784 63.158 0.00 0.00 43.36 4.35
202 203 1.597461 CCGGGGAGAAGTCCTTGTC 59.403 63.158 0.00 0.00 43.36 3.18
203 204 2.593956 GCCGGGGAGAAGTCCTTGT 61.594 63.158 2.18 0.00 43.36 3.16
204 205 2.269241 GCCGGGGAGAAGTCCTTG 59.731 66.667 2.18 0.00 43.36 3.61
205 206 3.009714 GGCCGGGGAGAAGTCCTT 61.010 66.667 2.18 0.00 43.36 3.36
219 220 0.815095 CAACATTTTACTCGGGGGCC 59.185 55.000 0.00 0.00 0.00 5.80
220 221 0.172578 GCAACATTTTACTCGGGGGC 59.827 55.000 0.00 0.00 0.00 5.80
221 222 0.815095 GGCAACATTTTACTCGGGGG 59.185 55.000 0.00 0.00 0.00 5.40
222 223 0.450184 CGGCAACATTTTACTCGGGG 59.550 55.000 0.00 0.00 0.00 5.73
223 224 1.135803 CACGGCAACATTTTACTCGGG 60.136 52.381 0.00 0.00 0.00 5.14
224 225 1.533731 ACACGGCAACATTTTACTCGG 59.466 47.619 0.00 0.00 0.00 4.63
225 226 2.961522 ACACGGCAACATTTTACTCG 57.038 45.000 0.00 0.00 0.00 4.18
226 227 5.539582 TCATACACGGCAACATTTTACTC 57.460 39.130 0.00 0.00 0.00 2.59
272 273 5.313712 TCTGTTTTGAAATGGAGGGAGTAC 58.686 41.667 0.00 0.00 0.00 2.73
273 274 5.576563 TCTGTTTTGAAATGGAGGGAGTA 57.423 39.130 0.00 0.00 0.00 2.59
274 275 4.453480 TCTGTTTTGAAATGGAGGGAGT 57.547 40.909 0.00 0.00 0.00 3.85
276 277 4.766891 GTCATCTGTTTTGAAATGGAGGGA 59.233 41.667 0.00 0.00 0.00 4.20
277 278 4.768968 AGTCATCTGTTTTGAAATGGAGGG 59.231 41.667 0.00 0.00 0.00 4.30
278 279 5.474532 TGAGTCATCTGTTTTGAAATGGAGG 59.525 40.000 0.00 0.00 0.00 4.30
280 281 6.239008 GGTTGAGTCATCTGTTTTGAAATGGA 60.239 38.462 0.00 0.00 0.00 3.41
281 282 5.922544 GGTTGAGTCATCTGTTTTGAAATGG 59.077 40.000 0.00 0.00 0.00 3.16
284 285 6.152661 ACAAGGTTGAGTCATCTGTTTTGAAA 59.847 34.615 0.00 0.00 0.00 2.69
287 288 5.505173 ACAAGGTTGAGTCATCTGTTTTG 57.495 39.130 0.00 1.22 0.00 2.44
288 289 6.357367 AGTACAAGGTTGAGTCATCTGTTTT 58.643 36.000 0.00 0.00 0.00 2.43
289 290 5.930135 AGTACAAGGTTGAGTCATCTGTTT 58.070 37.500 0.00 0.00 0.00 2.83
290 291 5.552870 AGTACAAGGTTGAGTCATCTGTT 57.447 39.130 0.00 0.00 0.00 3.16
291 292 6.267928 AGTTAGTACAAGGTTGAGTCATCTGT 59.732 38.462 0.00 0.00 0.00 3.41
292 293 6.692486 AGTTAGTACAAGGTTGAGTCATCTG 58.308 40.000 0.00 0.00 0.00 2.90
293 294 6.919775 AGTTAGTACAAGGTTGAGTCATCT 57.080 37.500 0.00 0.00 0.00 2.90
294 295 7.964604 AAAGTTAGTACAAGGTTGAGTCATC 57.035 36.000 0.00 0.00 0.00 2.92
295 296 8.648693 ACTAAAGTTAGTACAAGGTTGAGTCAT 58.351 33.333 1.81 0.00 41.92 3.06
296 297 8.015185 ACTAAAGTTAGTACAAGGTTGAGTCA 57.985 34.615 1.81 0.00 41.92 3.41
319 320 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
320 321 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
321 322 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
322 323 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
323 324 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
324 325 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
325 326 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
326 327 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
327 328 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
328 329 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
329 330 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
330 331 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
331 332 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
332 333 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
333 334 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
334 335 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
335 336 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
336 337 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
337 338 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
338 339 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
339 340 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
340 341 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
341 342 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
342 343 2.827921 GTTACTACTCCCTCCGTTCCAA 59.172 50.000 0.00 0.00 0.00 3.53
343 344 2.225091 TGTTACTACTCCCTCCGTTCCA 60.225 50.000 0.00 0.00 0.00 3.53
344 345 2.450476 TGTTACTACTCCCTCCGTTCC 58.550 52.381 0.00 0.00 0.00 3.62
345 346 3.737355 GCATGTTACTACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
346 347 2.167900 GCATGTTACTACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
347 348 1.755380 GCATGTTACTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
348 349 1.754803 TGCATGTTACTACTCCCTCCG 59.245 52.381 0.00 0.00 0.00 4.63
349 350 2.766828 AGTGCATGTTACTACTCCCTCC 59.233 50.000 0.00 0.00 0.00 4.30
350 351 4.184629 CAAGTGCATGTTACTACTCCCTC 58.815 47.826 5.39 0.00 0.00 4.30
351 352 3.055094 CCAAGTGCATGTTACTACTCCCT 60.055 47.826 5.39 0.00 0.00 4.20
352 353 3.270877 CCAAGTGCATGTTACTACTCCC 58.729 50.000 5.39 0.00 0.00 4.30
353 354 3.055385 TCCCAAGTGCATGTTACTACTCC 60.055 47.826 5.39 0.00 0.00 3.85
354 355 3.933332 GTCCCAAGTGCATGTTACTACTC 59.067 47.826 5.39 0.00 0.00 2.59
355 356 3.583086 AGTCCCAAGTGCATGTTACTACT 59.417 43.478 5.39 3.40 0.00 2.57
356 357 3.933332 GAGTCCCAAGTGCATGTTACTAC 59.067 47.826 5.39 1.50 0.00 2.73
357 358 3.580895 TGAGTCCCAAGTGCATGTTACTA 59.419 43.478 5.39 0.00 0.00 1.82
358 359 2.371841 TGAGTCCCAAGTGCATGTTACT 59.628 45.455 0.00 0.00 0.00 2.24
359 360 2.484264 GTGAGTCCCAAGTGCATGTTAC 59.516 50.000 0.00 0.00 0.00 2.50
360 361 2.105649 TGTGAGTCCCAAGTGCATGTTA 59.894 45.455 0.00 0.00 0.00 2.41
361 362 1.133823 TGTGAGTCCCAAGTGCATGTT 60.134 47.619 0.00 0.00 0.00 2.71
362 363 0.473755 TGTGAGTCCCAAGTGCATGT 59.526 50.000 0.00 0.00 0.00 3.21
363 364 1.608055 TTGTGAGTCCCAAGTGCATG 58.392 50.000 0.00 0.00 0.00 4.06
364 365 1.956477 GTTTGTGAGTCCCAAGTGCAT 59.044 47.619 0.00 0.00 0.00 3.96
365 366 1.340502 TGTTTGTGAGTCCCAAGTGCA 60.341 47.619 0.00 0.00 0.00 4.57
366 367 1.388547 TGTTTGTGAGTCCCAAGTGC 58.611 50.000 0.00 0.00 0.00 4.40
367 368 2.287788 GCATGTTTGTGAGTCCCAAGTG 60.288 50.000 0.00 0.00 0.00 3.16
368 369 1.956477 GCATGTTTGTGAGTCCCAAGT 59.044 47.619 0.00 0.00 0.00 3.16
369 370 2.233271 AGCATGTTTGTGAGTCCCAAG 58.767 47.619 0.00 0.00 0.00 3.61
370 371 2.363306 AGCATGTTTGTGAGTCCCAA 57.637 45.000 0.00 0.00 0.00 4.12
371 372 2.363306 AAGCATGTTTGTGAGTCCCA 57.637 45.000 0.00 0.00 0.00 4.37
372 373 3.758554 ACATAAGCATGTTTGTGAGTCCC 59.241 43.478 22.45 0.00 42.98 4.46
373 374 4.379813 CCACATAAGCATGTTTGTGAGTCC 60.380 45.833 22.45 0.00 42.98 3.85
374 375 4.726416 CCACATAAGCATGTTTGTGAGTC 58.274 43.478 22.45 0.00 42.98 3.36
375 376 3.057315 GCCACATAAGCATGTTTGTGAGT 60.057 43.478 22.45 5.69 42.98 3.41
376 377 3.057386 TGCCACATAAGCATGTTTGTGAG 60.057 43.478 22.45 15.51 42.98 3.51
377 378 2.889678 TGCCACATAAGCATGTTTGTGA 59.110 40.909 22.45 0.78 42.98 3.58
378 379 3.300852 TGCCACATAAGCATGTTTGTG 57.699 42.857 15.72 15.72 42.98 3.33
379 380 4.021280 TGATTGCCACATAAGCATGTTTGT 60.021 37.500 4.89 0.00 42.98 2.83
380 381 4.496360 TGATTGCCACATAAGCATGTTTG 58.504 39.130 4.89 0.00 42.98 2.93
381 382 4.804868 TGATTGCCACATAAGCATGTTT 57.195 36.364 0.00 0.00 42.98 2.83
382 383 4.804868 TTGATTGCCACATAAGCATGTT 57.195 36.364 0.00 0.00 42.98 2.71
383 384 5.347620 AATTGATTGCCACATAAGCATGT 57.652 34.783 0.00 0.00 46.58 3.21
384 385 7.707464 TCTTTAATTGATTGCCACATAAGCATG 59.293 33.333 0.00 0.00 40.59 4.06
385 386 7.784037 TCTTTAATTGATTGCCACATAAGCAT 58.216 30.769 0.00 0.00 40.59 3.79
386 387 7.167924 TCTTTAATTGATTGCCACATAAGCA 57.832 32.000 0.00 0.00 38.81 3.91
387 388 8.477984 TTTCTTTAATTGATTGCCACATAAGC 57.522 30.769 0.00 0.00 0.00 3.09
390 391 9.859427 CTCTTTTCTTTAATTGATTGCCACATA 57.141 29.630 0.00 0.00 0.00 2.29
391 392 8.587608 TCTCTTTTCTTTAATTGATTGCCACAT 58.412 29.630 0.00 0.00 0.00 3.21
392 393 7.867403 GTCTCTTTTCTTTAATTGATTGCCACA 59.133 33.333 0.00 0.00 0.00 4.17
393 394 7.867403 TGTCTCTTTTCTTTAATTGATTGCCAC 59.133 33.333 0.00 0.00 0.00 5.01
394 395 7.950512 TGTCTCTTTTCTTTAATTGATTGCCA 58.049 30.769 0.00 0.00 0.00 4.92
395 396 8.866956 CATGTCTCTTTTCTTTAATTGATTGCC 58.133 33.333 0.00 0.00 0.00 4.52
396 397 8.866956 CCATGTCTCTTTTCTTTAATTGATTGC 58.133 33.333 0.00 0.00 0.00 3.56
397 398 9.918630 ACCATGTCTCTTTTCTTTAATTGATTG 57.081 29.630 0.00 0.00 0.00 2.67
420 421 9.066892 CGGTACCTACTTATGTTACTATAACCA 57.933 37.037 10.90 0.00 0.00 3.67
421 422 9.067986 ACGGTACCTACTTATGTTACTATAACC 57.932 37.037 10.90 0.00 0.00 2.85
425 426 9.853177 AGTTACGGTACCTACTTATGTTACTAT 57.147 33.333 10.90 0.00 0.00 2.12
427 428 9.681062 TTAGTTACGGTACCTACTTATGTTACT 57.319 33.333 10.90 9.98 0.00 2.24
439 440 9.264719 GCATAACATTTATTAGTTACGGTACCT 57.735 33.333 10.90 0.00 33.49 3.08
440 441 9.264719 AGCATAACATTTATTAGTTACGGTACC 57.735 33.333 0.16 0.16 33.49 3.34
458 459 9.669887 TCATGCATGACATATAATAGCATAACA 57.330 29.630 25.42 0.00 39.00 2.41
475 476 7.760794 GGTTTTCTCATTTATTGTCATGCATGA 59.239 33.333 25.42 25.42 0.00 3.07
476 477 7.762615 AGGTTTTCTCATTTATTGTCATGCATG 59.237 33.333 21.07 21.07 0.00 4.06
477 478 7.844009 AGGTTTTCTCATTTATTGTCATGCAT 58.156 30.769 0.00 0.00 0.00 3.96
478 479 7.230849 AGGTTTTCTCATTTATTGTCATGCA 57.769 32.000 0.00 0.00 0.00 3.96
479 480 9.241317 CATAGGTTTTCTCATTTATTGTCATGC 57.759 33.333 0.00 0.00 0.00 4.06
504 505 9.938280 AGTGCATAGTAACAAAGATTAGTAACA 57.062 29.630 0.00 0.00 0.00 2.41
512 513 9.618890 ACATTCATAGTGCATAGTAACAAAGAT 57.381 29.630 0.00 0.00 0.00 2.40
515 516 9.884636 ACTACATTCATAGTGCATAGTAACAAA 57.115 29.630 0.00 0.00 34.02 2.83
572 573 8.615705 TGGTCATAGTGGAGAGTATCATATACT 58.384 37.037 0.00 0.00 37.82 2.12
573 574 8.809468 TGGTCATAGTGGAGAGTATCATATAC 57.191 38.462 0.00 0.00 37.82 1.47
574 575 7.558081 GCTGGTCATAGTGGAGAGTATCATATA 59.442 40.741 0.00 0.00 37.82 0.86
575 576 6.379703 GCTGGTCATAGTGGAGAGTATCATAT 59.620 42.308 0.00 0.00 37.82 1.78
576 577 5.712446 GCTGGTCATAGTGGAGAGTATCATA 59.288 44.000 0.00 0.00 37.82 2.15
577 578 4.526262 GCTGGTCATAGTGGAGAGTATCAT 59.474 45.833 0.00 0.00 37.82 2.45
578 579 3.891977 GCTGGTCATAGTGGAGAGTATCA 59.108 47.826 0.00 0.00 37.82 2.15
579 580 3.257127 GGCTGGTCATAGTGGAGAGTATC 59.743 52.174 0.00 0.00 0.00 2.24
580 581 3.116939 AGGCTGGTCATAGTGGAGAGTAT 60.117 47.826 0.00 0.00 0.00 2.12
581 582 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
582 583 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
583 584 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
584 585 2.254152 AAGGCTGGTCATAGTGGAGA 57.746 50.000 0.00 0.00 0.00 3.71
585 586 3.197766 TGTTAAGGCTGGTCATAGTGGAG 59.802 47.826 0.00 0.00 0.00 3.86
586 587 3.178046 TGTTAAGGCTGGTCATAGTGGA 58.822 45.455 0.00 0.00 0.00 4.02
587 588 3.627395 TGTTAAGGCTGGTCATAGTGG 57.373 47.619 0.00 0.00 0.00 4.00
588 589 5.415701 ACAATTGTTAAGGCTGGTCATAGTG 59.584 40.000 4.92 0.00 0.00 2.74
589 590 5.570320 ACAATTGTTAAGGCTGGTCATAGT 58.430 37.500 4.92 0.00 0.00 2.12
590 591 5.220662 CGACAATTGTTAAGGCTGGTCATAG 60.221 44.000 13.36 0.00 0.00 2.23
591 592 4.634004 CGACAATTGTTAAGGCTGGTCATA 59.366 41.667 13.36 0.00 0.00 2.15
592 593 3.440173 CGACAATTGTTAAGGCTGGTCAT 59.560 43.478 13.36 0.00 0.00 3.06
593 594 2.811431 CGACAATTGTTAAGGCTGGTCA 59.189 45.455 13.36 0.00 0.00 4.02
594 595 3.071479 TCGACAATTGTTAAGGCTGGTC 58.929 45.455 13.36 0.00 0.00 4.02
595 596 3.074412 CTCGACAATTGTTAAGGCTGGT 58.926 45.455 13.36 0.00 0.00 4.00
596 597 3.074412 ACTCGACAATTGTTAAGGCTGG 58.926 45.455 13.36 0.96 0.00 4.85
597 598 3.125316 GGACTCGACAATTGTTAAGGCTG 59.875 47.826 20.27 8.29 0.00 4.85
598 599 3.244422 TGGACTCGACAATTGTTAAGGCT 60.244 43.478 20.27 5.78 0.00 4.58
599 600 3.071479 TGGACTCGACAATTGTTAAGGC 58.929 45.455 13.36 14.54 0.00 4.35
600 601 3.435671 GGTGGACTCGACAATTGTTAAGG 59.564 47.826 13.36 6.42 0.00 2.69
601 602 4.315803 AGGTGGACTCGACAATTGTTAAG 58.684 43.478 13.36 14.82 0.00 1.85
602 603 4.312443 GAGGTGGACTCGACAATTGTTAA 58.688 43.478 13.36 3.16 36.29 2.01
603 604 3.921677 GAGGTGGACTCGACAATTGTTA 58.078 45.455 13.36 3.50 36.29 2.41
604 605 2.767505 GAGGTGGACTCGACAATTGTT 58.232 47.619 13.36 0.00 36.29 2.83
605 606 2.457366 GAGGTGGACTCGACAATTGT 57.543 50.000 11.78 11.78 36.29 2.71
769 770 7.693951 CCATTTTCACGCTAAAAGAATACTCTG 59.306 37.037 2.52 0.00 32.20 3.35
770 771 7.606456 TCCATTTTCACGCTAAAAGAATACTCT 59.394 33.333 2.52 0.00 32.20 3.24
771 772 7.748847 TCCATTTTCACGCTAAAAGAATACTC 58.251 34.615 2.52 0.00 32.20 2.59
772 773 7.606456 TCTCCATTTTCACGCTAAAAGAATACT 59.394 33.333 2.52 0.00 32.20 2.12
773 774 7.748847 TCTCCATTTTCACGCTAAAAGAATAC 58.251 34.615 2.52 0.00 32.20 1.89
778 779 9.261180 TCTATATCTCCATTTTCACGCTAAAAG 57.739 33.333 2.52 0.00 32.20 2.27
793 794 5.774102 TCTACCGGACATCTATATCTCCA 57.226 43.478 9.46 0.00 0.00 3.86
794 795 6.829298 TGAATCTACCGGACATCTATATCTCC 59.171 42.308 9.46 0.00 0.00 3.71
795 796 7.554835 AGTGAATCTACCGGACATCTATATCTC 59.445 40.741 9.46 0.00 0.00 2.75
796 797 7.338196 CAGTGAATCTACCGGACATCTATATCT 59.662 40.741 9.46 0.00 0.00 1.98
797 798 7.415765 CCAGTGAATCTACCGGACATCTATATC 60.416 44.444 9.46 0.00 0.00 1.63
798 799 6.378564 CCAGTGAATCTACCGGACATCTATAT 59.621 42.308 9.46 0.00 0.00 0.86
799 800 5.710567 CCAGTGAATCTACCGGACATCTATA 59.289 44.000 9.46 0.00 0.00 1.31
800 801 4.524714 CCAGTGAATCTACCGGACATCTAT 59.475 45.833 9.46 0.00 0.00 1.98
801 802 3.889538 CCAGTGAATCTACCGGACATCTA 59.110 47.826 9.46 0.00 0.00 1.98
802 803 2.695666 CCAGTGAATCTACCGGACATCT 59.304 50.000 9.46 0.00 0.00 2.90
803 804 2.693591 TCCAGTGAATCTACCGGACATC 59.306 50.000 9.46 0.00 0.00 3.06
844 845 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
845 846 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
846 847 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
847 848 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
848 849 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
849 850 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
850 851 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
851 852 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
852 853 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
853 854 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
854 855 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
855 856 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
856 857 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
857 858 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
858 859 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
859 860 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
860 861 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
861 862 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
862 863 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
863 864 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
864 865 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
865 866 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
866 867 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
867 868 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
868 869 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
869 870 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
870 871 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
871 872 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
872 873 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
873 874 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
874 875 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
875 876 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
876 877 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
877 878 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
878 879 4.261405 CGTCTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
879 880 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
880 881 3.632604 TCGTCTCTCTCTCTCTCTCTCTC 59.367 52.174 0.00 0.00 0.00 3.20
881 882 3.632333 TCGTCTCTCTCTCTCTCTCTCT 58.368 50.000 0.00 0.00 0.00 3.10
882 883 3.381908 ACTCGTCTCTCTCTCTCTCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
883 884 3.131223 CACTCGTCTCTCTCTCTCTCTCT 59.869 52.174 0.00 0.00 0.00 3.10
884 885 3.130516 TCACTCGTCTCTCTCTCTCTCTC 59.869 52.174 0.00 0.00 0.00 3.20
885 886 3.096852 TCACTCGTCTCTCTCTCTCTCT 58.903 50.000 0.00 0.00 0.00 3.10
899 900 2.336478 CCGCAGTCTCCTCACTCGT 61.336 63.158 0.00 0.00 0.00 4.18
900 901 2.487428 CCGCAGTCTCCTCACTCG 59.513 66.667 0.00 0.00 0.00 4.18
939 940 2.309764 CTTTTCGATGAAGGGCGGCG 62.310 60.000 0.51 0.51 0.00 6.46
940 941 1.429423 CTTTTCGATGAAGGGCGGC 59.571 57.895 0.00 0.00 0.00 6.53
941 942 1.305219 TGCTTTTCGATGAAGGGCGG 61.305 55.000 10.08 0.00 0.00 6.13
942 943 0.521291 TTGCTTTTCGATGAAGGGCG 59.479 50.000 10.08 0.00 0.00 6.13
943 944 2.723124 TTTGCTTTTCGATGAAGGGC 57.277 45.000 10.08 2.01 0.00 5.19
944 945 2.989166 GCTTTTGCTTTTCGATGAAGGG 59.011 45.455 10.08 0.00 43.35 3.95
1169 1176 1.079750 GCGAGAAAGCGGAGGAAGT 60.080 57.895 0.00 0.00 0.00 3.01
1228 1236 2.158310 TCGGATCTACAGATGGATGGGT 60.158 50.000 0.00 0.00 34.37 4.51
1386 1394 2.183046 GTGCTCTGCTCCGGAGAC 59.817 66.667 35.69 24.72 39.05 3.36
1513 1703 8.432359 GTTTTAGCTTTTAACATTTGAATCGGG 58.568 33.333 0.00 0.00 0.00 5.14
1542 1736 2.230508 TCAGTTTAGCACGGTCGAGAAT 59.769 45.455 0.00 0.00 0.00 2.40
1663 1858 3.063180 AGCGAGCATTTTCAGAGAAATCG 59.937 43.478 8.17 8.17 0.00 3.34
1708 1903 5.832060 GGAATCACTTGATCATTTCCAGGAT 59.168 40.000 0.00 0.00 32.49 3.24
1994 2230 6.378280 AGAATTGAAGATGGTCCAATGTTACC 59.622 38.462 0.00 0.00 36.24 2.85
2089 2342 8.042515 ACCGATTTAACAGCTAATGGTTAGTTA 58.957 33.333 0.00 0.00 35.66 2.24
2113 2366 1.202698 ACAGTTGAGAGCTGACCAACC 60.203 52.381 14.96 3.05 40.57 3.77
2324 2620 8.394877 TGTGTGTCAAGTAAGTATTTTGTGAAG 58.605 33.333 0.00 0.00 0.00 3.02
2371 2668 4.093011 CTCATGAAGGGAGTATAGGAGGG 58.907 52.174 0.00 0.00 0.00 4.30
2372 2669 4.093011 CCTCATGAAGGGAGTATAGGAGG 58.907 52.174 0.00 0.00 42.03 4.30
2611 2909 5.394115 GCCTTCCTACCATTTGTATTTGTGG 60.394 44.000 0.00 0.00 37.74 4.17
3530 9008 9.928236 GCAAGATATTTCAAGTAGCTTTTAGAG 57.072 33.333 0.00 0.00 0.00 2.43
3928 11446 3.888460 TGGCTGCACTGGCTTCCA 61.888 61.111 0.50 0.00 41.91 3.53
4272 13922 1.541147 CAACAGTTGCCAACATCCGAT 59.459 47.619 10.69 0.00 0.00 4.18
4322 13972 4.481930 TTTACCTGCACAAAGATGAACG 57.518 40.909 0.00 0.00 0.00 3.95
4370 14020 8.740906 GCATACATACTGTTAGCTTATCTCCTA 58.259 37.037 0.00 0.00 0.00 2.94
4409 14059 3.415457 CTTCAACTGAAGCTTCCTCCT 57.585 47.619 23.42 2.94 44.10 3.69
4619 14284 8.186821 GTGAATCAAGTGATCCCTTAGATTTTG 58.813 37.037 12.89 0.00 34.42 2.44
4682 15779 4.681512 GCAAATCAATCCATGGGAACTTCC 60.682 45.833 13.02 0.00 34.34 3.46
4686 15783 3.196254 AGTGCAAATCAATCCATGGGAAC 59.804 43.478 13.02 0.00 34.34 3.62
4791 15889 3.582647 AGAGAGAGTGAGTGTGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
4794 15892 3.935203 GAGAGAGAGAGTGAGTGTGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
4795 15893 3.307410 GGAGAGAGAGAGTGAGTGTGAGA 60.307 52.174 0.00 0.00 0.00 3.27
4796 15894 3.009723 GGAGAGAGAGAGTGAGTGTGAG 58.990 54.545 0.00 0.00 0.00 3.51
4797 15895 2.290641 GGGAGAGAGAGAGTGAGTGTGA 60.291 54.545 0.00 0.00 0.00 3.58
4798 15896 2.091541 GGGAGAGAGAGAGTGAGTGTG 58.908 57.143 0.00 0.00 0.00 3.82
4799 15897 1.992557 AGGGAGAGAGAGAGTGAGTGT 59.007 52.381 0.00 0.00 0.00 3.55
4805 16143 1.222567 GAGGGAGGGAGAGAGAGAGT 58.777 60.000 0.00 0.00 0.00 3.24
4806 16144 1.133792 GTGAGGGAGGGAGAGAGAGAG 60.134 61.905 0.00 0.00 0.00 3.20
4812 16150 1.075600 GGGAGTGAGGGAGGGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
4822 16160 2.041405 GGGGAGGGAGGGAGTGAG 60.041 72.222 0.00 0.00 0.00 3.51
4839 16291 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
4851 16303 2.106566 GGAGCCAACATGAGAGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
4885 16576 2.638363 GTCCAGAGGGGTAAAGTGTCTT 59.362 50.000 0.00 0.00 38.11 3.01
4952 16643 3.691609 GGTGGAAGATAAAGGCTGAAGTG 59.308 47.826 0.00 0.00 0.00 3.16
4956 16647 3.587061 TCAAGGTGGAAGATAAAGGCTGA 59.413 43.478 0.00 0.00 0.00 4.26
4977 16668 3.785859 TGGAGGACATGGCGGCTC 61.786 66.667 11.43 0.00 0.00 4.70
4982 16673 0.983378 ACTAGGGTGGAGGACATGGC 60.983 60.000 0.00 0.00 0.00 4.40
5024 16718 3.010420 GGTTGAGAGGTTAAGATGTGGC 58.990 50.000 0.00 0.00 0.00 5.01
5035 16729 1.129058 AGTTGGTTCGGTTGAGAGGT 58.871 50.000 0.00 0.00 0.00 3.85
5058 16752 2.361567 GCTTGGGCTTTCCATGGGG 61.362 63.158 13.02 3.91 46.52 4.96
5085 16779 1.295915 TAGCCCAGCCCCCATGATTT 61.296 55.000 0.00 0.00 0.00 2.17
5117 16811 4.163458 GGTGGGTTCTAGTGTGGATTGATA 59.837 45.833 0.00 0.00 0.00 2.15
5130 16824 2.626785 TGATGGTCTTGGTGGGTTCTA 58.373 47.619 0.00 0.00 0.00 2.10
5131 16825 1.444933 TGATGGTCTTGGTGGGTTCT 58.555 50.000 0.00 0.00 0.00 3.01
5157 16851 3.674997 TCTTCTTTCCCAATGGAGTTCG 58.325 45.455 0.00 0.00 43.07 3.95
5212 16906 1.025113 CAGTCTGCTGGTGCTGGATG 61.025 60.000 0.00 0.00 39.01 3.51
5219 16913 1.830587 TAGGCCACAGTCTGCTGGTG 61.831 60.000 5.01 3.15 46.62 4.17
5248 16942 3.244249 CGAGAACTTCCTTGGAGAGGTTT 60.244 47.826 0.00 0.00 46.39 3.27
5326 17020 4.122149 TGGGATTGGGCGGCGAAT 62.122 61.111 18.91 18.91 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.