Multiple sequence alignment - TraesCS7B01G493100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G493100 chr7B 100.000 4900 0 0 1 4900 744664762 744659863 0.000000e+00 9049.0
1 TraesCS7B01G493100 chr7B 94.938 1857 71 11 1407 3252 746489318 746491162 0.000000e+00 2887.0
2 TraesCS7B01G493100 chr7B 94.372 1386 38 11 3515 4900 746276461 746277806 0.000000e+00 2091.0
3 TraesCS7B01G493100 chr7B 96.711 973 32 0 2280 3252 746275337 746276309 0.000000e+00 1620.0
4 TraesCS7B01G493100 chr7B 91.513 919 74 4 1 918 746271518 746272433 0.000000e+00 1262.0
5 TraesCS7B01G493100 chr7B 92.740 854 40 9 1407 2249 746274500 746275342 0.000000e+00 1214.0
6 TraesCS7B01G493100 chr7B 95.639 642 17 4 3515 4156 746491314 746491944 0.000000e+00 1020.0
7 TraesCS7B01G493100 chr7B 95.435 460 15 2 942 1401 746488761 746489214 0.000000e+00 728.0
8 TraesCS7B01G493100 chr7B 84.110 730 96 11 1869 2583 253700122 253699398 0.000000e+00 688.0
9 TraesCS7B01G493100 chr7B 87.737 579 46 12 3518 4092 253696141 253695584 0.000000e+00 652.0
10 TraesCS7B01G493100 chr7B 87.197 578 56 8 3518 4092 718359632 718359070 4.130000e-180 641.0
11 TraesCS7B01G493100 chr7B 95.105 286 13 1 1117 1401 746274066 746274351 2.690000e-122 449.0
12 TraesCS7B01G493100 chr7B 87.245 392 48 2 2632 3023 718361162 718360773 3.480000e-121 446.0
13 TraesCS7B01G493100 chr7B 85.714 406 42 9 2623 3023 253698731 253698337 9.810000e-112 414.0
14 TraesCS7B01G493100 chr7B 95.109 184 8 1 4717 4900 746491937 746492119 6.210000e-74 289.0
15 TraesCS7B01G493100 chr7B 90.780 141 8 4 942 1077 746211844 746211984 3.010000e-42 183.0
16 TraesCS7B01G493100 chr7B 92.424 66 2 2 3338 3402 744661370 744661307 1.880000e-14 91.6
17 TraesCS7B01G493100 chr7B 92.424 66 2 2 3393 3456 744661425 744661361 1.880000e-14 91.6
18 TraesCS7B01G493100 chr7D 94.197 1861 73 20 1407 3252 633056512 633054672 0.000000e+00 2806.0
19 TraesCS7B01G493100 chr7D 96.793 842 16 4 3518 4359 633054517 633053687 0.000000e+00 1395.0
20 TraesCS7B01G493100 chr7D 97.600 500 11 1 4401 4900 633053685 633053187 0.000000e+00 856.0
21 TraesCS7B01G493100 chr7D 87.973 582 51 8 3515 4092 621646549 621647115 0.000000e+00 669.0
22 TraesCS7B01G493100 chr7D 87.801 582 46 12 3515 4092 279743968 279744528 0.000000e+00 658.0
23 TraesCS7B01G493100 chr7D 93.213 442 14 4 944 1385 633057187 633056762 1.920000e-178 636.0
24 TraesCS7B01G493100 chr7D 83.075 644 92 13 1947 2583 621643626 621644259 1.980000e-158 569.0
25 TraesCS7B01G493100 chr7D 86.567 402 39 9 2623 3020 279741318 279741708 3.500000e-116 429.0
26 TraesCS7B01G493100 chr7D 86.216 399 45 6 2624 3020 621644898 621645288 1.630000e-114 424.0
27 TraesCS7B01G493100 chr7D 85.981 321 31 9 4092 4401 621647886 621648203 1.020000e-86 331.0
28 TraesCS7B01G493100 chr7D 84.848 264 32 7 4466 4727 621648227 621648484 4.870000e-65 259.0
29 TraesCS7B01G493100 chr7D 87.000 200 15 6 3022 3213 279742370 279742566 1.070000e-51 215.0
30 TraesCS7B01G493100 chr7D 89.189 111 6 4 842 952 549124019 549124123 3.080000e-27 134.0
31 TraesCS7B01G493100 chr7D 95.000 60 3 0 3455 3514 628591774 628591833 1.450000e-15 95.3
32 TraesCS7B01G493100 chr3D 90.621 853 71 5 1 846 607539541 607538691 0.000000e+00 1123.0
33 TraesCS7B01G493100 chr3D 89.215 853 83 5 1 846 456648517 456649367 0.000000e+00 1057.0
34 TraesCS7B01G493100 chr3D 95.082 61 2 1 3455 3514 562374677 562374737 1.450000e-15 95.3
35 TraesCS7B01G493100 chr3D 92.063 63 5 0 3455 3517 478421492 478421430 6.760000e-14 89.8
36 TraesCS7B01G493100 chr3D 94.595 37 2 0 3265 3301 599370559 599370523 1.910000e-04 58.4
37 TraesCS7B01G493100 chr6D 90.504 853 72 5 1 846 159798260 159799110 0.000000e+00 1118.0
38 TraesCS7B01G493100 chr6D 88.462 104 4 3 842 943 458479666 458479569 8.620000e-23 119.0
39 TraesCS7B01G493100 chr6D 94.545 55 3 0 3462 3516 4245319 4245265 8.740000e-13 86.1
40 TraesCS7B01G493100 chr1B 90.270 853 73 6 1 846 334676813 334677662 0.000000e+00 1107.0
41 TraesCS7B01G493100 chr1B 85.737 638 84 5 2003 2636 657405968 657406602 0.000000e+00 667.0
42 TraesCS7B01G493100 chr1B 86.888 572 59 10 3515 4085 657409077 657409633 1.160000e-175 627.0
43 TraesCS7B01G493100 chr1B 86.111 540 57 12 3555 4092 657415193 657415716 2.560000e-157 566.0
44 TraesCS7B01G493100 chr1B 83.826 507 50 18 1500 1978 588517806 588517304 2.080000e-123 453.0
45 TraesCS7B01G493100 chr1B 82.540 504 52 12 3608 4089 657416793 657417282 1.270000e-110 411.0
46 TraesCS7B01G493100 chr1B 92.973 185 13 0 3021 3205 657408435 657408619 2.250000e-68 270.0
47 TraesCS7B01G493100 chr1D 90.187 856 69 10 1 846 118506406 118507256 0.000000e+00 1101.0
48 TraesCS7B01G493100 chr1D 85.054 649 90 6 1991 2636 472905810 472906454 0.000000e+00 654.0
49 TraesCS7B01G493100 chr1D 86.189 572 62 11 3515 4085 472908751 472909306 1.950000e-168 603.0
50 TraesCS7B01G493100 chr1D 85.900 539 60 10 3555 4092 472914794 472915317 1.190000e-155 560.0
51 TraesCS7B01G493100 chr1D 83.235 507 54 15 1500 1978 435295269 435294766 2.090000e-118 436.0
52 TraesCS7B01G493100 chr1D 93.514 185 12 0 3021 3205 472908234 472908418 4.830000e-70 276.0
53 TraesCS7B01G493100 chr1D 82.484 314 22 12 3800 4091 472916877 472917179 1.360000e-60 244.0
54 TraesCS7B01G493100 chr1D 89.785 186 17 2 3021 3205 472914173 472914357 2.280000e-58 237.0
55 TraesCS7B01G493100 chr1D 88.288 111 6 5 842 952 33061076 33060973 5.150000e-25 126.0
56 TraesCS7B01G493100 chr1D 88.288 111 6 5 842 952 33284714 33284611 5.150000e-25 126.0
57 TraesCS7B01G493100 chr1D 95.238 63 3 0 3455 3517 2688105 2688167 3.120000e-17 100.0
58 TraesCS7B01G493100 chr1D 100.000 46 0 0 3357 3402 2688029 2688074 8.740000e-13 86.1
59 TraesCS7B01G493100 chr1D 100.000 42 0 0 3415 3456 2688033 2688074 1.460000e-10 78.7
60 TraesCS7B01G493100 chr4D 89.918 853 78 4 1 846 107699999 107699148 0.000000e+00 1092.0
61 TraesCS7B01G493100 chr4D 94.915 59 3 0 3458 3516 497187349 497187291 5.220000e-15 93.5
62 TraesCS7B01G493100 chr4D 91.525 59 5 0 3458 3516 479296666 479296608 1.130000e-11 82.4
63 TraesCS7B01G493100 chr4D 89.231 65 6 1 3455 3519 447286121 447286058 4.070000e-11 80.5
64 TraesCS7B01G493100 chr5D 89.801 853 79 4 1 846 517363569 517364420 0.000000e+00 1086.0
65 TraesCS7B01G493100 chr5D 82.390 477 55 14 1853 2320 557182690 557182234 5.950000e-104 388.0
66 TraesCS7B01G493100 chr5D 80.297 538 73 16 3518 4037 557180162 557179640 4.630000e-100 375.0
67 TraesCS7B01G493100 chr5D 86.911 191 19 2 3021 3205 557180677 557180487 4.970000e-50 209.0
68 TraesCS7B01G493100 chr5D 96.825 63 2 0 3455 3517 439787515 439787577 6.710000e-19 106.0
69 TraesCS7B01G493100 chr2D 89.683 853 79 5 1 846 14816089 14816939 0.000000e+00 1079.0
70 TraesCS7B01G493100 chr7A 84.010 763 101 10 1840 2583 316022439 316021679 0.000000e+00 713.0
71 TraesCS7B01G493100 chr7A 87.565 579 47 11 3518 4092 316017451 316016894 0.000000e+00 647.0
72 TraesCS7B01G493100 chr7A 86.598 582 59 8 3515 4092 717089163 717089729 4.160000e-175 625.0
73 TraesCS7B01G493100 chr7A 83.628 678 80 16 4092 4757 717090500 717091158 4.190000e-170 608.0
74 TraesCS7B01G493100 chr7A 82.716 648 91 14 1947 2583 717085542 717086179 1.540000e-154 556.0
75 TraesCS7B01G493100 chr7A 87.500 400 44 6 2624 3020 717086821 717087217 1.610000e-124 457.0
76 TraesCS7B01G493100 chr7A 87.277 393 38 8 2632 3023 316021009 316020628 5.820000e-119 438.0
77 TraesCS7B01G493100 chr7A 96.721 61 2 0 3457 3517 7290466 7290406 8.680000e-18 102.0
78 TraesCS7B01G493100 chr7A 95.238 63 3 0 3455 3517 148805751 148805813 3.120000e-17 100.0
79 TraesCS7B01G493100 chr1A 86.538 572 61 10 3515 4085 566638829 566639385 2.510000e-172 616.0
80 TraesCS7B01G493100 chr1A 86.085 539 59 10 3555 4092 566647209 566647732 2.560000e-157 566.0
81 TraesCS7B01G493100 chr1A 83.697 595 49 25 1409 1959 532807353 532806763 7.270000e-143 518.0
82 TraesCS7B01G493100 chr1A 82.051 507 55 21 3608 4092 566648798 566649290 2.750000e-107 399.0
83 TraesCS7B01G493100 chr1A 91.892 185 15 0 3021 3205 566638312 566638496 4.870000e-65 259.0
84 TraesCS7B01G493100 chr1A 87.113 194 23 2 3021 3213 566646564 566646756 8.260000e-53 219.0
85 TraesCS7B01G493100 chr1A 91.489 47 4 0 3356 3402 19091210 19091256 1.140000e-06 65.8
86 TraesCS7B01G493100 chr1A 91.489 47 2 2 3412 3456 19091210 19091256 4.090000e-06 63.9
87 TraesCS7B01G493100 chr4A 83.962 530 58 12 1821 2338 605666403 605665889 2.650000e-132 483.0
88 TraesCS7B01G493100 chr4A 89.003 291 32 0 1440 1730 605666742 605666452 1.300000e-95 361.0
89 TraesCS7B01G493100 chr4A 100.000 63 0 0 3455 3517 730115019 730114957 3.100000e-22 117.0
90 TraesCS7B01G493100 chr4A 96.429 56 2 0 3461 3516 609576370 609576425 5.220000e-15 93.5
91 TraesCS7B01G493100 chr5B 85.864 382 47 4 1407 1781 709422199 709422580 2.750000e-107 399.0
92 TraesCS7B01G493100 chr5B 78.261 575 93 14 3515 4069 709424979 709425541 1.690000e-89 340.0
93 TraesCS7B01G493100 chr5B 81.236 437 36 17 1858 2276 709422622 709423030 1.320000e-80 311.0
94 TraesCS7B01G493100 chr5B 87.437 199 19 3 3021 3213 709424444 709424642 1.770000e-54 224.0
95 TraesCS7B01G493100 chr5B 87.574 169 16 4 2854 3020 709423414 709423579 1.800000e-44 191.0
96 TraesCS7B01G493100 chr5B 98.361 61 1 0 3457 3517 34911992 34911932 1.870000e-19 108.0
97 TraesCS7B01G493100 chr2B 87.594 266 31 2 1440 1704 781774180 781774444 1.710000e-79 307.0
98 TraesCS7B01G493100 chr6B 96.104 77 3 0 842 918 695057930 695058006 5.150000e-25 126.0
99 TraesCS7B01G493100 chr6B 91.304 69 5 1 3449 3516 239773074 239773142 5.220000e-15 93.5
100 TraesCS7B01G493100 chr3B 96.667 60 2 0 3455 3514 749676491 749676550 3.120000e-17 100.0
101 TraesCS7B01G493100 chr3B 97.826 46 1 0 3357 3402 749676415 749676460 4.070000e-11 80.5
102 TraesCS7B01G493100 chr3B 97.619 42 1 0 3415 3456 749676419 749676460 6.800000e-09 73.1
103 TraesCS7B01G493100 chr3A 95.238 63 3 0 3455 3517 12042762 12042824 3.120000e-17 100.0
104 TraesCS7B01G493100 chr3A 100.000 46 0 0 3357 3402 735378676 735378721 8.740000e-13 86.1
105 TraesCS7B01G493100 chr3A 100.000 42 0 0 3415 3456 735378680 735378721 1.460000e-10 78.7
106 TraesCS7B01G493100 chr3A 97.619 42 1 0 3415 3456 12042690 12042731 6.800000e-09 73.1
107 TraesCS7B01G493100 chr3A 100.000 34 0 0 3358 3391 8846188 8846155 4.090000e-06 63.9
108 TraesCS7B01G493100 chr3A 100.000 31 0 0 3415 3445 8846185 8846155 1.910000e-04 58.4
109 TraesCS7B01G493100 chrUn 96.429 56 2 0 3461 3516 204475597 204475652 5.220000e-15 93.5
110 TraesCS7B01G493100 chrUn 93.220 59 4 0 3458 3516 22716046 22716104 2.430000e-13 87.9
111 TraesCS7B01G493100 chrUn 94.643 56 3 0 3461 3516 231011872 231011927 2.430000e-13 87.9
112 TraesCS7B01G493100 chr6A 93.220 59 4 0 3458 3516 32070262 32070320 2.430000e-13 87.9
113 TraesCS7B01G493100 chr4B 93.220 59 4 0 3458 3516 2745521 2745463 2.430000e-13 87.9
114 TraesCS7B01G493100 chr4B 93.220 59 4 0 3458 3516 65935945 65936003 2.430000e-13 87.9
115 TraesCS7B01G493100 chr4B 100.000 45 0 0 3358 3402 5936521 5936477 3.140000e-12 84.2
116 TraesCS7B01G493100 chr4B 100.000 42 0 0 3415 3456 5936518 5936477 1.460000e-10 78.7
117 TraesCS7B01G493100 chr4B 95.745 47 2 0 3356 3402 608852540 608852586 5.260000e-10 76.8
118 TraesCS7B01G493100 chr4B 95.238 42 2 0 3415 3456 608852545 608852586 3.170000e-07 67.6
119 TraesCS7B01G493100 chr2A 97.917 48 1 0 3355 3402 54138808 54138855 3.140000e-12 84.2
120 TraesCS7B01G493100 chr2A 97.619 42 1 0 3415 3456 54138814 54138855 6.800000e-09 73.1
121 TraesCS7B01G493100 chr5A 97.778 45 1 0 3357 3401 554561471 554561427 1.460000e-10 78.7
122 TraesCS7B01G493100 chr5A 97.561 41 1 0 3415 3455 554561467 554561427 2.450000e-08 71.3
123 TraesCS7B01G493100 chr5A 93.182 44 3 0 3359 3402 605704873 605704830 1.140000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G493100 chr7B 744659863 744664762 4899 True 3077.400000 9049 94.949333 1 4900 3 chr7B.!!$R3 4899
1 TraesCS7B01G493100 chr7B 746271518 746277806 6288 False 1327.200000 2091 94.088200 1 4900 5 chr7B.!!$F2 4899
2 TraesCS7B01G493100 chr7B 746488761 746492119 3358 False 1231.000000 2887 95.280250 942 4900 4 chr7B.!!$F3 3958
3 TraesCS7B01G493100 chr7B 253695584 253700122 4538 True 584.666667 688 85.853667 1869 4092 3 chr7B.!!$R1 2223
4 TraesCS7B01G493100 chr7B 718359070 718361162 2092 True 543.500000 641 87.221000 2632 4092 2 chr7B.!!$R2 1460
5 TraesCS7B01G493100 chr7D 633053187 633057187 4000 True 1423.250000 2806 95.450750 944 4900 4 chr7D.!!$R1 3956
6 TraesCS7B01G493100 chr7D 621643626 621648484 4858 False 450.400000 669 85.618600 1947 4727 5 chr7D.!!$F4 2780
7 TraesCS7B01G493100 chr7D 279741318 279744528 3210 False 434.000000 658 87.122667 2623 4092 3 chr7D.!!$F3 1469
8 TraesCS7B01G493100 chr3D 607538691 607539541 850 True 1123.000000 1123 90.621000 1 846 1 chr3D.!!$R3 845
9 TraesCS7B01G493100 chr3D 456648517 456649367 850 False 1057.000000 1057 89.215000 1 846 1 chr3D.!!$F1 845
10 TraesCS7B01G493100 chr6D 159798260 159799110 850 False 1118.000000 1118 90.504000 1 846 1 chr6D.!!$F1 845
11 TraesCS7B01G493100 chr1B 334676813 334677662 849 False 1107.000000 1107 90.270000 1 846 1 chr1B.!!$F1 845
12 TraesCS7B01G493100 chr1B 657405968 657409633 3665 False 521.333333 667 88.532667 2003 4085 3 chr1B.!!$F2 2082
13 TraesCS7B01G493100 chr1B 657415193 657417282 2089 False 488.500000 566 84.325500 3555 4092 2 chr1B.!!$F3 537
14 TraesCS7B01G493100 chr1B 588517304 588517806 502 True 453.000000 453 83.826000 1500 1978 1 chr1B.!!$R1 478
15 TraesCS7B01G493100 chr1D 118506406 118507256 850 False 1101.000000 1101 90.187000 1 846 1 chr1D.!!$F1 845
16 TraesCS7B01G493100 chr1D 472905810 472909306 3496 False 511.000000 654 88.252333 1991 4085 3 chr1D.!!$F3 2094
17 TraesCS7B01G493100 chr1D 435294766 435295269 503 True 436.000000 436 83.235000 1500 1978 1 chr1D.!!$R3 478
18 TraesCS7B01G493100 chr1D 472914173 472917179 3006 False 347.000000 560 86.056333 3021 4092 3 chr1D.!!$F4 1071
19 TraesCS7B01G493100 chr4D 107699148 107699999 851 True 1092.000000 1092 89.918000 1 846 1 chr4D.!!$R1 845
20 TraesCS7B01G493100 chr5D 517363569 517364420 851 False 1086.000000 1086 89.801000 1 846 1 chr5D.!!$F2 845
21 TraesCS7B01G493100 chr5D 557179640 557182690 3050 True 324.000000 388 83.199333 1853 4037 3 chr5D.!!$R1 2184
22 TraesCS7B01G493100 chr2D 14816089 14816939 850 False 1079.000000 1079 89.683000 1 846 1 chr2D.!!$F1 845
23 TraesCS7B01G493100 chr7A 316016894 316022439 5545 True 599.333333 713 86.284000 1840 4092 3 chr7A.!!$R2 2252
24 TraesCS7B01G493100 chr7A 717085542 717091158 5616 False 561.500000 625 85.110500 1947 4757 4 chr7A.!!$F2 2810
25 TraesCS7B01G493100 chr1A 532806763 532807353 590 True 518.000000 518 83.697000 1409 1959 1 chr1A.!!$R1 550
26 TraesCS7B01G493100 chr1A 566638312 566639385 1073 False 437.500000 616 89.215000 3021 4085 2 chr1A.!!$F2 1064
27 TraesCS7B01G493100 chr1A 566646564 566649290 2726 False 394.666667 566 85.083000 3021 4092 3 chr1A.!!$F3 1071
28 TraesCS7B01G493100 chr4A 605665889 605666742 853 True 422.000000 483 86.482500 1440 2338 2 chr4A.!!$R2 898
29 TraesCS7B01G493100 chr5B 709422199 709425541 3342 False 293.000000 399 84.074400 1407 4069 5 chr5B.!!$F1 2662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 698 0.458543 CCACATCTCTTCACCGGTCG 60.459 60.0 2.59 0.0 0.0 4.79 F
1812 3580 0.031515 TTATCCGCCCCCTTCAGAGA 60.032 55.0 0.00 0.0 0.0 3.10 F
2291 4125 0.106918 ACAGCTCCTAGACTCCCTCG 60.107 60.0 0.00 0.0 0.0 4.63 F
3284 7833 0.398318 CCTGGCCCCTCTTATGTAGC 59.602 60.0 0.00 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3586 0.480690 TAGGCCCAGTTCTTTTGCCA 59.519 50.000 0.00 0.0 44.60 4.92 R
3367 10324 0.036732 CTGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.0 42.66 1.85 R
3421 10378 0.036732 CTGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.0 42.66 1.85 R
4837 17820 1.202758 ACTGCATTCCGTTCCACAGAA 60.203 47.619 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 51 1.302033 CAGACCTCGCAGCCAAACT 60.302 57.895 0.00 0.00 0.00 2.66
232 237 1.460273 TAGCTGCAGTCGACACCACA 61.460 55.000 19.50 8.84 0.00 4.17
264 269 2.202932 CGCCACTATCCTGCGCTT 60.203 61.111 9.73 0.00 41.95 4.68
271 276 3.243737 CCACTATCCTGCGCTTGTACATA 60.244 47.826 9.73 0.00 0.00 2.29
282 287 3.561310 CGCTTGTACATAATCACATGCCT 59.439 43.478 0.00 0.00 40.71 4.75
345 350 2.089201 TGTCGACGTGTCAGATACCAT 58.911 47.619 11.62 0.00 0.00 3.55
352 357 1.068588 GTGTCAGATACCATGCCGCTA 59.931 52.381 0.00 0.00 0.00 4.26
363 368 0.905357 ATGCCGCTACTCCTCTTGTT 59.095 50.000 0.00 0.00 0.00 2.83
486 494 3.545703 GGAACATTCCGATCAGGTTGAT 58.454 45.455 0.00 0.00 37.43 2.57
494 502 2.430694 CCGATCAGGTTGATGTGACCTA 59.569 50.000 0.00 0.00 45.58 3.08
521 529 4.208426 TGCCTCGAGAAGGGAACA 57.792 55.556 15.71 0.00 43.57 3.18
526 534 2.876079 GCCTCGAGAAGGGAACAATGTT 60.876 50.000 15.71 0.00 46.32 2.71
530 538 2.779506 GAGAAGGGAACAATGTTCGGT 58.220 47.619 18.52 6.54 0.00 4.69
671 680 1.664873 GGTAAACCAGCGAAGATCCC 58.335 55.000 0.00 0.00 35.64 3.85
679 688 1.411977 CAGCGAAGATCCCACATCTCT 59.588 52.381 0.00 0.00 0.00 3.10
689 698 0.458543 CCACATCTCTTCACCGGTCG 60.459 60.000 2.59 0.00 0.00 4.79
695 704 1.949847 CTCTTCACCGGTCGCTCCAT 61.950 60.000 2.59 0.00 35.57 3.41
777 786 3.716195 CCGCCACCACCATCTCCA 61.716 66.667 0.00 0.00 0.00 3.86
854 863 3.423154 GCCGCTCCGAGTGTTTGG 61.423 66.667 8.14 0.00 0.00 3.28
860 869 1.407437 GCTCCGAGTGTTTGGATGGAT 60.407 52.381 0.00 0.00 36.26 3.41
891 900 6.329197 CCCTGATGAGGTTATCCCTTTACTTA 59.671 42.308 0.00 0.00 46.51 2.24
959 968 6.682423 AAAGGTTCATCCAAAAGCAAAAAG 57.318 33.333 0.00 0.00 39.02 2.27
960 969 4.129380 AGGTTCATCCAAAAGCAAAAAGC 58.871 39.130 0.00 0.00 40.63 3.51
961 970 3.876320 GGTTCATCCAAAAGCAAAAAGCA 59.124 39.130 0.00 0.00 40.25 3.91
962 971 4.024641 GGTTCATCCAAAAGCAAAAAGCAG 60.025 41.667 0.00 0.00 40.25 4.24
963 972 6.987666 GGTTCATCCAAAAGCAAAAAGCAGG 61.988 44.000 0.00 0.00 40.25 4.85
1154 2597 7.246674 TGTACTCTAATTCATTCGATTTGGC 57.753 36.000 0.00 0.00 0.00 4.52
1173 2616 1.740025 GCTTCGTCTGATTTCCCCTTG 59.260 52.381 0.00 0.00 0.00 3.61
1230 2674 7.645058 AACAGAGGAATTTCAGTTTTTCTCA 57.355 32.000 0.00 0.00 0.00 3.27
1256 2700 3.560239 CCATCTGTAGATCCGAGGCTCTA 60.560 52.174 13.50 0.49 31.21 2.43
1281 2725 1.671979 GCATCTGCCAGTATCTGCAA 58.328 50.000 0.00 0.00 34.31 4.08
1401 2845 3.618690 ATCTTTTCTCCGGAACAGAGG 57.381 47.619 5.23 0.00 40.27 3.69
1403 2847 3.173965 TCTTTTCTCCGGAACAGAGGAT 58.826 45.455 5.23 0.00 34.52 3.24
1404 2848 3.195825 TCTTTTCTCCGGAACAGAGGATC 59.804 47.826 5.23 0.00 34.52 3.36
1425 3147 7.941238 AGGATCTATGACATTTTCCGAATTCAT 59.059 33.333 6.22 0.00 0.00 2.57
1426 3148 8.233190 GGATCTATGACATTTTCCGAATTCATC 58.767 37.037 6.22 0.00 0.00 2.92
1427 3149 8.681486 ATCTATGACATTTTCCGAATTCATCA 57.319 30.769 6.22 0.00 0.00 3.07
1624 3356 3.718434 AGGCTCCTGGAAATGATCATGTA 59.282 43.478 9.46 0.00 0.00 2.29
1726 3468 8.616076 GGATGTCAATTTACACTCTAGAAATGG 58.384 37.037 8.21 0.00 30.75 3.16
1800 3568 3.380142 CTTCAGAGAGAAGCTTATCCGC 58.620 50.000 17.24 10.07 46.54 5.54
1801 3569 1.683917 TCAGAGAGAAGCTTATCCGCC 59.316 52.381 17.24 7.44 0.00 6.13
1802 3570 1.044611 AGAGAGAAGCTTATCCGCCC 58.955 55.000 17.24 5.09 0.00 6.13
1803 3571 0.034198 GAGAGAAGCTTATCCGCCCC 59.966 60.000 17.24 0.00 0.00 5.80
1805 3573 1.384643 AGAAGCTTATCCGCCCCCT 60.385 57.895 0.00 0.00 0.00 4.79
1806 3574 0.988678 AGAAGCTTATCCGCCCCCTT 60.989 55.000 0.00 0.00 0.00 3.95
1808 3576 1.279025 AAGCTTATCCGCCCCCTTCA 61.279 55.000 0.00 0.00 0.00 3.02
1809 3577 1.227973 GCTTATCCGCCCCCTTCAG 60.228 63.158 0.00 0.00 0.00 3.02
1811 3579 0.394565 CTTATCCGCCCCCTTCAGAG 59.605 60.000 0.00 0.00 0.00 3.35
1812 3580 0.031515 TTATCCGCCCCCTTCAGAGA 60.032 55.000 0.00 0.00 0.00 3.10
1813 3581 0.470080 TATCCGCCCCCTTCAGAGAG 60.470 60.000 0.00 0.00 0.00 3.20
1814 3582 2.243774 ATCCGCCCCCTTCAGAGAGA 62.244 60.000 0.00 0.00 0.00 3.10
1815 3583 1.990060 CCGCCCCCTTCAGAGAGAA 60.990 63.158 0.00 0.00 34.41 2.87
1945 3731 9.118300 AGAATTATGTTTATTCTCTCCTTGCTG 57.882 33.333 0.00 0.00 37.73 4.41
1967 3759 4.082625 TGCTACTCAAATGTGATTTGCCTG 60.083 41.667 7.10 1.38 46.96 4.85
1985 3777 0.465460 TGTCAGCTTGCCGAAAAGGT 60.465 50.000 0.00 0.00 43.70 3.50
2097 3897 6.514947 TGCATGCTCTTTAAAACAAATCTGT 58.485 32.000 20.33 0.00 37.39 3.41
2156 3969 1.939934 TCACTGAAAAGGCAGAACGTG 59.060 47.619 0.00 0.00 39.20 4.49
2207 4023 1.155042 GCTCTTTGTCTGCCTGTCAG 58.845 55.000 0.00 0.00 44.21 3.51
2291 4125 0.106918 ACAGCTCCTAGACTCCCTCG 60.107 60.000 0.00 0.00 0.00 4.63
2369 4204 2.609459 CTGGCAGCCAAATACTTCTACG 59.391 50.000 17.03 0.00 30.80 3.51
2401 4236 6.701145 AGCTTCTTCACTCACTAATATCGA 57.299 37.500 0.00 0.00 0.00 3.59
2447 4282 6.660521 ACCAAACATCAAAGATGCAGAATAGA 59.339 34.615 6.90 0.00 0.00 1.98
2546 4381 0.476338 TGGTAGGAAGGCAGCAACAA 59.524 50.000 0.00 0.00 0.00 2.83
3253 7802 1.605712 GCGGAGTATGTAGATGCACCC 60.606 57.143 0.00 0.00 0.00 4.61
3255 7804 2.288457 CGGAGTATGTAGATGCACCCAG 60.288 54.545 0.00 0.00 0.00 4.45
3256 7805 2.037772 GGAGTATGTAGATGCACCCAGG 59.962 54.545 0.00 0.00 0.00 4.45
3257 7806 1.417890 AGTATGTAGATGCACCCAGGC 59.582 52.381 0.00 0.00 0.00 4.85
3259 7808 1.999634 ATGTAGATGCACCCAGGCCC 62.000 60.000 0.00 0.00 0.00 5.80
3260 7809 2.286045 TAGATGCACCCAGGCCCA 60.286 61.111 0.00 0.00 0.00 5.36
3262 7811 4.828296 GATGCACCCAGGCCCAGG 62.828 72.222 7.12 7.12 0.00 4.45
3279 7828 2.778717 GCCCCTGGCCCCTCTTAT 60.779 66.667 0.00 0.00 44.06 1.73
3280 7829 3.138728 GCCCCTGGCCCCTCTTATG 62.139 68.421 0.00 0.00 44.06 1.90
3281 7830 1.697754 CCCCTGGCCCCTCTTATGT 60.698 63.158 0.00 0.00 0.00 2.29
3282 7831 0.401395 CCCCTGGCCCCTCTTATGTA 60.401 60.000 0.00 0.00 0.00 2.29
3283 7832 1.059913 CCCTGGCCCCTCTTATGTAG 58.940 60.000 0.00 0.00 0.00 2.74
3284 7833 0.398318 CCTGGCCCCTCTTATGTAGC 59.602 60.000 0.00 0.00 0.00 3.58
3285 7834 0.398318 CTGGCCCCTCTTATGTAGCC 59.602 60.000 0.00 0.00 40.87 3.93
3286 7835 2.539983 GGCCCCTCTTATGTAGCCA 58.460 57.895 0.00 0.00 40.20 4.75
3287 7836 1.068121 GGCCCCTCTTATGTAGCCAT 58.932 55.000 0.00 0.00 40.20 4.40
3288 7837 1.003696 GGCCCCTCTTATGTAGCCATC 59.996 57.143 0.00 0.00 40.20 3.51
3289 7838 1.003696 GCCCCTCTTATGTAGCCATCC 59.996 57.143 0.00 0.00 32.29 3.51
3290 7839 2.338809 CCCCTCTTATGTAGCCATCCA 58.661 52.381 0.00 0.00 32.29 3.41
3291 7840 2.915604 CCCCTCTTATGTAGCCATCCAT 59.084 50.000 0.00 0.00 32.29 3.41
3292 7841 3.331889 CCCCTCTTATGTAGCCATCCATT 59.668 47.826 0.00 0.00 32.29 3.16
3293 7842 4.566488 CCCCTCTTATGTAGCCATCCATTC 60.566 50.000 0.00 0.00 32.29 2.67
3294 7843 4.288105 CCCTCTTATGTAGCCATCCATTCT 59.712 45.833 0.00 0.00 32.29 2.40
3295 7844 5.222007 CCCTCTTATGTAGCCATCCATTCTT 60.222 44.000 0.00 0.00 32.29 2.52
3296 7845 6.302269 CCTCTTATGTAGCCATCCATTCTTT 58.698 40.000 0.00 0.00 32.29 2.52
3297 7846 6.206243 CCTCTTATGTAGCCATCCATTCTTTG 59.794 42.308 0.00 0.00 32.29 2.77
3298 7847 5.532406 TCTTATGTAGCCATCCATTCTTTGC 59.468 40.000 0.00 0.00 32.29 3.68
3299 7848 3.084536 TGTAGCCATCCATTCTTTGCA 57.915 42.857 0.00 0.00 0.00 4.08
3300 7849 3.634504 TGTAGCCATCCATTCTTTGCAT 58.365 40.909 0.00 0.00 0.00 3.96
3301 7850 4.025360 TGTAGCCATCCATTCTTTGCATT 58.975 39.130 0.00 0.00 0.00 3.56
3302 7851 3.814005 AGCCATCCATTCTTTGCATTC 57.186 42.857 0.00 0.00 0.00 2.67
3303 7852 3.371965 AGCCATCCATTCTTTGCATTCT 58.628 40.909 0.00 0.00 0.00 2.40
3304 7853 3.773119 AGCCATCCATTCTTTGCATTCTT 59.227 39.130 0.00 0.00 0.00 2.52
3305 7854 4.117685 GCCATCCATTCTTTGCATTCTTC 58.882 43.478 0.00 0.00 0.00 2.87
3306 7855 4.357142 CCATCCATTCTTTGCATTCTTCG 58.643 43.478 0.00 0.00 0.00 3.79
3307 7856 3.492421 TCCATTCTTTGCATTCTTCGC 57.508 42.857 0.00 0.00 0.00 4.70
3308 7857 2.819019 TCCATTCTTTGCATTCTTCGCA 59.181 40.909 0.00 0.00 37.68 5.10
3309 7858 3.444742 TCCATTCTTTGCATTCTTCGCAT 59.555 39.130 0.00 0.00 39.58 4.73
3310 7859 3.795101 CCATTCTTTGCATTCTTCGCATC 59.205 43.478 0.00 0.00 39.58 3.91
3311 7860 4.417506 CATTCTTTGCATTCTTCGCATCA 58.582 39.130 0.00 0.00 39.58 3.07
3312 7861 4.502171 TTCTTTGCATTCTTCGCATCAA 57.498 36.364 0.00 0.00 39.58 2.57
3313 7862 4.087510 TCTTTGCATTCTTCGCATCAAG 57.912 40.909 0.00 0.00 39.58 3.02
3314 7863 3.752747 TCTTTGCATTCTTCGCATCAAGA 59.247 39.130 0.00 0.00 39.58 3.02
3315 7864 4.397103 TCTTTGCATTCTTCGCATCAAGAT 59.603 37.500 0.00 0.00 39.58 2.40
3316 7865 3.957671 TGCATTCTTCGCATCAAGATC 57.042 42.857 0.00 0.00 33.55 2.75
3317 7866 3.272581 TGCATTCTTCGCATCAAGATCA 58.727 40.909 0.00 0.00 33.55 2.92
3318 7867 3.064408 TGCATTCTTCGCATCAAGATCAC 59.936 43.478 0.00 0.00 33.55 3.06
3319 7868 3.547613 GCATTCTTCGCATCAAGATCACC 60.548 47.826 0.00 0.00 32.32 4.02
3320 7869 3.333029 TTCTTCGCATCAAGATCACCA 57.667 42.857 0.00 0.00 32.32 4.17
3321 7870 3.548745 TCTTCGCATCAAGATCACCAT 57.451 42.857 0.00 0.00 0.00 3.55
3322 7871 3.877559 TCTTCGCATCAAGATCACCATT 58.122 40.909 0.00 0.00 0.00 3.16
3323 7872 3.873361 TCTTCGCATCAAGATCACCATTC 59.127 43.478 0.00 0.00 0.00 2.67
3324 7873 3.548745 TCGCATCAAGATCACCATTCT 57.451 42.857 0.00 0.00 0.00 2.40
3325 7874 3.877559 TCGCATCAAGATCACCATTCTT 58.122 40.909 0.00 0.00 33.75 2.52
3326 7875 3.873361 TCGCATCAAGATCACCATTCTTC 59.127 43.478 0.00 0.00 31.11 2.87
3327 7876 3.302935 CGCATCAAGATCACCATTCTTCG 60.303 47.826 0.00 0.00 31.11 3.79
3328 7877 3.547613 GCATCAAGATCACCATTCTTCGC 60.548 47.826 0.00 0.00 31.11 4.70
3329 7878 3.333029 TCAAGATCACCATTCTTCGCA 57.667 42.857 0.00 0.00 31.11 5.10
3330 7879 3.877559 TCAAGATCACCATTCTTCGCAT 58.122 40.909 0.00 0.00 31.11 4.73
3331 7880 4.264253 TCAAGATCACCATTCTTCGCATT 58.736 39.130 0.00 0.00 31.11 3.56
3332 7881 4.333649 TCAAGATCACCATTCTTCGCATTC 59.666 41.667 0.00 0.00 31.11 2.67
3333 7882 4.148128 AGATCACCATTCTTCGCATTCT 57.852 40.909 0.00 0.00 0.00 2.40
3334 7883 4.521146 AGATCACCATTCTTCGCATTCTT 58.479 39.130 0.00 0.00 0.00 2.52
3335 7884 4.574013 AGATCACCATTCTTCGCATTCTTC 59.426 41.667 0.00 0.00 0.00 2.87
3378 10335 9.826574 TGTACGAAAATATATTTTAGAGCACCT 57.173 29.630 27.54 13.21 39.86 4.00
3380 10337 7.639945 ACGAAAATATATTTTAGAGCACCTGC 58.360 34.615 27.54 11.37 39.86 4.85
3381 10338 7.282224 ACGAAAATATATTTTAGAGCACCTGCA 59.718 33.333 27.54 0.00 40.69 4.41
3382 10339 7.587757 CGAAAATATATTTTAGAGCACCTGCAC 59.412 37.037 20.69 5.66 40.69 4.57
3383 10340 6.884280 AATATATTTTAGAGCACCTGCACC 57.116 37.500 0.00 0.00 45.16 5.01
3384 10341 1.839424 ATTTTAGAGCACCTGCACCC 58.161 50.000 0.00 0.00 45.16 4.61
3385 10342 0.476338 TTTTAGAGCACCTGCACCCA 59.524 50.000 0.00 0.00 45.16 4.51
3396 10353 3.015145 GCACCCAGGCCCCTCTTA 61.015 66.667 0.00 0.00 0.00 2.10
3397 10354 2.386935 GCACCCAGGCCCCTCTTAT 61.387 63.158 0.00 0.00 0.00 1.73
3398 10355 1.839894 CACCCAGGCCCCTCTTATC 59.160 63.158 0.00 0.00 0.00 1.75
3399 10356 0.695803 CACCCAGGCCCCTCTTATCT 60.696 60.000 0.00 0.00 0.00 1.98
3400 10357 0.949582 ACCCAGGCCCCTCTTATCTA 59.050 55.000 0.00 0.00 0.00 1.98
3401 10358 1.132689 ACCCAGGCCCCTCTTATCTAG 60.133 57.143 0.00 0.00 0.00 2.43
3402 10359 1.150135 CCCAGGCCCCTCTTATCTAGA 59.850 57.143 0.00 0.00 0.00 2.43
3403 10360 2.427889 CCCAGGCCCCTCTTATCTAGAA 60.428 54.545 0.00 0.00 30.91 2.10
3404 10361 3.525862 CCAGGCCCCTCTTATCTAGAAT 58.474 50.000 0.00 0.00 30.91 2.40
3405 10362 4.512942 CCCAGGCCCCTCTTATCTAGAATA 60.513 50.000 0.00 0.00 30.91 1.75
3406 10363 5.284582 CCAGGCCCCTCTTATCTAGAATAT 58.715 45.833 0.00 0.00 30.91 1.28
3407 10364 6.444704 CCAGGCCCCTCTTATCTAGAATATA 58.555 44.000 0.00 0.00 30.91 0.86
3408 10365 7.079048 CCAGGCCCCTCTTATCTAGAATATAT 58.921 42.308 0.00 0.00 30.91 0.86
3409 10366 7.016072 CCAGGCCCCTCTTATCTAGAATATATG 59.984 44.444 0.00 0.00 30.91 1.78
3410 10367 7.566879 CAGGCCCCTCTTATCTAGAATATATGT 59.433 40.741 0.00 0.00 30.91 2.29
3411 10368 8.802640 AGGCCCCTCTTATCTAGAATATATGTA 58.197 37.037 0.00 0.00 30.91 2.29
3412 10369 8.862085 GGCCCCTCTTATCTAGAATATATGTAC 58.138 40.741 0.00 0.00 30.91 2.90
3413 10370 8.569641 GCCCCTCTTATCTAGAATATATGTACG 58.430 40.741 0.00 0.00 30.91 3.67
3414 10371 9.848710 CCCCTCTTATCTAGAATATATGTACGA 57.151 37.037 0.00 0.00 30.91 3.43
3433 10390 8.812147 TGTACGAATATATTTTAGAGCACCTG 57.188 34.615 0.00 0.00 0.00 4.00
3434 10391 6.787085 ACGAATATATTTTAGAGCACCTGC 57.213 37.500 0.00 0.00 42.49 4.85
3435 10392 6.288294 ACGAATATATTTTAGAGCACCTGCA 58.712 36.000 0.00 0.00 45.16 4.41
3436 10393 6.202954 ACGAATATATTTTAGAGCACCTGCAC 59.797 38.462 0.00 0.00 45.16 4.57
3437 10394 6.347725 CGAATATATTTTAGAGCACCTGCACC 60.348 42.308 0.00 0.00 45.16 5.01
3438 10395 1.839424 ATTTTAGAGCACCTGCACCC 58.161 50.000 0.00 0.00 45.16 4.61
3439 10396 0.476338 TTTTAGAGCACCTGCACCCA 59.524 50.000 0.00 0.00 45.16 4.51
3440 10397 0.036732 TTTAGAGCACCTGCACCCAG 59.963 55.000 0.00 0.00 45.16 4.45
3450 10407 3.015145 GCACCCAGGCCCCTCTTA 61.015 66.667 0.00 0.00 0.00 2.10
3451 10408 2.386935 GCACCCAGGCCCCTCTTAT 61.387 63.158 0.00 0.00 0.00 1.73
3452 10409 1.839894 CACCCAGGCCCCTCTTATC 59.160 63.158 0.00 0.00 0.00 1.75
3453 10410 0.695803 CACCCAGGCCCCTCTTATCT 60.696 60.000 0.00 0.00 0.00 1.98
3454 10411 0.949582 ACCCAGGCCCCTCTTATCTA 59.050 55.000 0.00 0.00 0.00 1.98
3455 10412 1.132689 ACCCAGGCCCCTCTTATCTAG 60.133 57.143 0.00 0.00 0.00 2.43
3456 10413 1.132689 CCCAGGCCCCTCTTATCTAGT 60.133 57.143 0.00 0.00 0.00 2.57
3457 10414 2.111972 CCCAGGCCCCTCTTATCTAGTA 59.888 54.545 0.00 0.00 0.00 1.82
3458 10415 3.166679 CCAGGCCCCTCTTATCTAGTAC 58.833 54.545 0.00 0.00 0.00 2.73
3459 10416 3.438078 CCAGGCCCCTCTTATCTAGTACA 60.438 52.174 0.00 0.00 0.00 2.90
3460 10417 4.421131 CAGGCCCCTCTTATCTAGTACAT 58.579 47.826 0.00 0.00 0.00 2.29
3461 10418 4.841246 CAGGCCCCTCTTATCTAGTACATT 59.159 45.833 0.00 0.00 0.00 2.71
3462 10419 5.308237 CAGGCCCCTCTTATCTAGTACATTT 59.692 44.000 0.00 0.00 0.00 2.32
3463 10420 5.544562 AGGCCCCTCTTATCTAGTACATTTC 59.455 44.000 0.00 0.00 0.00 2.17
3464 10421 5.544562 GGCCCCTCTTATCTAGTACATTTCT 59.455 44.000 0.00 0.00 0.00 2.52
3465 10422 6.295405 GGCCCCTCTTATCTAGTACATTTCTC 60.295 46.154 0.00 0.00 0.00 2.87
3466 10423 6.495526 GCCCCTCTTATCTAGTACATTTCTCT 59.504 42.308 0.00 0.00 0.00 3.10
3467 10424 7.015779 GCCCCTCTTATCTAGTACATTTCTCTT 59.984 40.741 0.00 0.00 0.00 2.85
3468 10425 8.929487 CCCCTCTTATCTAGTACATTTCTCTTT 58.071 37.037 0.00 0.00 0.00 2.52
3497 10456 9.809096 TGTTTCTCTCACATAGAATATGTCTTC 57.191 33.333 0.00 0.00 37.84 2.87
3501 10460 9.194972 TCTCTCACATAGAATATGTCTTCAAGT 57.805 33.333 0.00 0.00 37.84 3.16
3503 10462 9.809096 TCTCACATAGAATATGTCTTCAAGTTC 57.191 33.333 0.00 0.00 37.84 3.01
3510 10469 8.697507 AGAATATGTCTTCAAGTTCAAACCTT 57.302 30.769 0.00 0.00 29.66 3.50
3511 10470 9.136323 AGAATATGTCTTCAAGTTCAAACCTTT 57.864 29.630 0.00 0.00 29.66 3.11
3512 10471 9.185192 GAATATGTCTTCAAGTTCAAACCTTTG 57.815 33.333 0.00 0.00 39.48 2.77
3513 10472 4.743493 TGTCTTCAAGTTCAAACCTTTGC 58.257 39.130 0.00 0.00 38.05 3.68
3516 10522 4.704540 TCTTCAAGTTCAAACCTTTGCAGA 59.295 37.500 0.00 0.00 38.05 4.26
3551 10559 9.677567 TTGTTCTTGATTTGTATGCTTCTAAAC 57.322 29.630 0.00 0.00 0.00 2.01
3559 10726 6.642683 TTGTATGCTTCTAAACGCTACTTC 57.357 37.500 0.00 0.00 0.00 3.01
3561 10728 5.805486 TGTATGCTTCTAAACGCTACTTCAG 59.195 40.000 0.00 0.00 0.00 3.02
3667 10848 6.819146 TCCGCACTAAATTTATGTGTATGTGA 59.181 34.615 19.74 11.69 34.52 3.58
3720 10901 5.136828 TGAAGGACCAATACTTTGCAGAAA 58.863 37.500 0.00 0.00 0.00 2.52
3809 12539 4.892433 AGCCATCTGAACAGTATGATAGC 58.108 43.478 12.29 0.00 39.69 2.97
3869 14440 0.242825 TGCTGCAAATGAGCAAGAGC 59.757 50.000 0.00 0.00 43.47 4.09
3872 14443 1.540267 CTGCAAATGAGCAAGAGCACT 59.460 47.619 0.00 0.00 45.13 4.40
3873 14444 2.745821 CTGCAAATGAGCAAGAGCACTA 59.254 45.455 0.00 0.00 45.13 2.74
3874 14445 3.349927 TGCAAATGAGCAAGAGCACTAT 58.650 40.909 0.00 0.00 45.49 2.12
3875 14446 3.376234 TGCAAATGAGCAAGAGCACTATC 59.624 43.478 0.00 0.00 45.49 2.08
3876 14447 3.243002 GCAAATGAGCAAGAGCACTATCC 60.243 47.826 0.00 0.00 45.49 2.59
3877 14448 3.920231 AATGAGCAAGAGCACTATCCA 57.080 42.857 0.00 0.00 45.49 3.41
3878 14449 3.920231 ATGAGCAAGAGCACTATCCAA 57.080 42.857 0.00 0.00 45.49 3.53
3879 14450 2.977914 TGAGCAAGAGCACTATCCAAC 58.022 47.619 0.00 0.00 45.49 3.77
3880 14451 2.284190 GAGCAAGAGCACTATCCAACC 58.716 52.381 0.00 0.00 45.49 3.77
3881 14452 1.912043 AGCAAGAGCACTATCCAACCT 59.088 47.619 0.00 0.00 45.49 3.50
3882 14453 2.012673 GCAAGAGCACTATCCAACCTG 58.987 52.381 0.00 0.00 41.58 4.00
4560 17543 3.941483 AGTATGCCTTTTTCTGATCCACG 59.059 43.478 0.00 0.00 0.00 4.94
4571 17554 7.504924 TTTTCTGATCCACGTCAATTAACTT 57.495 32.000 0.00 0.00 0.00 2.66
4677 17660 4.612264 TTACTCCACTTGGGTCAACTAC 57.388 45.455 0.00 0.00 38.11 2.73
4743 17726 8.532186 TTGCTATCCTAATATTTGGAAAGCAA 57.468 30.769 20.29 18.19 35.77 3.91
4756 17739 5.999205 TGGAAAGCAAATGTACCATGAAT 57.001 34.783 0.00 0.00 0.00 2.57
4764 17747 8.757982 AGCAAATGTACCATGAATAAAGAGAT 57.242 30.769 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 113 4.329545 TGGTTGAGGAGTGCGCCC 62.330 66.667 4.18 0.00 0.00 6.13
173 178 5.789521 TGCAGCAGTACAACACTAAAGATA 58.210 37.500 0.00 0.00 34.98 1.98
232 237 3.335534 GCGTTGTCTGGCGTCGTT 61.336 61.111 0.00 0.00 0.00 3.85
264 269 4.502431 CCGGTAGGCATGTGATTATGTACA 60.502 45.833 0.00 0.00 0.00 2.90
282 287 3.348554 TAGCAGGGTCTCGCCGGTA 62.349 63.158 1.90 0.00 38.44 4.02
345 350 0.246635 GAACAAGAGGAGTAGCGGCA 59.753 55.000 1.45 0.00 0.00 5.69
352 357 1.650528 CTGGAGGGAACAAGAGGAGT 58.349 55.000 0.00 0.00 0.00 3.85
363 368 1.455849 CAAGTGTTGGCTGGAGGGA 59.544 57.895 0.00 0.00 0.00 4.20
470 478 3.535561 GTCACATCAACCTGATCGGAAT 58.464 45.455 2.08 0.00 34.28 3.01
486 494 1.667756 GCATCGTCGTTGTAGGTCACA 60.668 52.381 5.28 0.00 34.51 3.58
571 579 1.595929 GACGTGGCTTCCGGTGAAA 60.596 57.895 0.00 0.00 0.00 2.69
671 680 1.078759 GCGACCGGTGAAGAGATGTG 61.079 60.000 14.63 0.00 0.00 3.21
679 688 2.264480 CATGGAGCGACCGGTGAA 59.736 61.111 14.63 0.00 42.61 3.18
703 712 4.754667 GTGGCCTTCCGTCGACCC 62.755 72.222 10.58 4.58 34.14 4.46
777 786 2.599597 GGGGTGCCTGATCTGCAT 59.400 61.111 12.56 0.00 41.46 3.96
854 863 3.618351 CTCATCAGGGGCATTATCCATC 58.382 50.000 0.00 0.00 0.00 3.51
860 869 3.330701 GGATAACCTCATCAGGGGCATTA 59.669 47.826 0.00 0.00 45.53 1.90
918 927 9.312904 TGAACCTTTTCTCCTTTATTCATTCAT 57.687 29.630 0.00 0.00 32.36 2.57
919 928 8.704849 TGAACCTTTTCTCCTTTATTCATTCA 57.295 30.769 0.00 0.00 32.36 2.57
920 929 9.794685 GATGAACCTTTTCTCCTTTATTCATTC 57.205 33.333 0.00 0.00 36.07 2.67
921 930 8.753133 GGATGAACCTTTTCTCCTTTATTCATT 58.247 33.333 0.00 0.00 36.07 2.57
922 931 7.895429 TGGATGAACCTTTTCTCCTTTATTCAT 59.105 33.333 0.00 0.00 38.04 2.57
923 932 7.237982 TGGATGAACCTTTTCTCCTTTATTCA 58.762 34.615 0.00 0.00 39.86 2.57
925 934 8.491045 TTTGGATGAACCTTTTCTCCTTTATT 57.509 30.769 0.00 0.00 39.86 1.40
927 936 7.471399 GCTTTTGGATGAACCTTTTCTCCTTTA 60.471 37.037 0.00 0.00 39.86 1.85
929 938 5.221521 GCTTTTGGATGAACCTTTTCTCCTT 60.222 40.000 0.00 0.00 39.86 3.36
931 940 4.039124 TGCTTTTGGATGAACCTTTTCTCC 59.961 41.667 0.00 0.00 39.86 3.71
933 942 5.612725 TTGCTTTTGGATGAACCTTTTCT 57.387 34.783 0.00 0.00 39.86 2.52
934 943 6.676237 TTTTGCTTTTGGATGAACCTTTTC 57.324 33.333 0.00 0.00 39.86 2.29
935 944 6.404623 GCTTTTTGCTTTTGGATGAACCTTTT 60.405 34.615 0.00 0.00 37.92 2.27
936 945 5.066375 GCTTTTTGCTTTTGGATGAACCTTT 59.934 36.000 0.00 0.00 37.92 3.11
937 946 4.576053 GCTTTTTGCTTTTGGATGAACCTT 59.424 37.500 0.00 0.00 37.92 3.50
938 947 4.129380 GCTTTTTGCTTTTGGATGAACCT 58.871 39.130 0.00 0.00 37.92 3.50
939 948 3.876320 TGCTTTTTGCTTTTGGATGAACC 59.124 39.130 0.00 0.00 43.37 3.62
1154 2597 1.740025 GCAAGGGGAAATCAGACGAAG 59.260 52.381 0.00 0.00 0.00 3.79
1230 2674 3.161067 CCTCGGATCTACAGATGGATGT 58.839 50.000 0.00 0.00 34.37 3.06
1281 2725 1.836166 CAGTCCATCTGGGTGAGACAT 59.164 52.381 0.00 0.00 40.23 3.06
1386 2830 2.534042 AGATCCTCTGTTCCGGAGAA 57.466 50.000 3.34 0.00 39.05 2.87
1395 2839 5.363868 TCGGAAAATGTCATAGATCCTCTGT 59.636 40.000 8.85 0.00 0.00 3.41
1401 2845 8.777413 TGATGAATTCGGAAAATGTCATAGATC 58.223 33.333 0.04 0.00 0.00 2.75
1403 2847 8.504812 TTGATGAATTCGGAAAATGTCATAGA 57.495 30.769 0.04 0.00 0.00 1.98
1404 2848 9.740239 ATTTGATGAATTCGGAAAATGTCATAG 57.260 29.630 0.04 0.00 0.00 2.23
1425 3147 5.333798 CGGTCGAGAAGCTTTTAACATTTGA 60.334 40.000 0.00 0.00 0.00 2.69
1426 3148 4.846137 CGGTCGAGAAGCTTTTAACATTTG 59.154 41.667 0.00 0.00 0.00 2.32
1427 3149 4.514066 ACGGTCGAGAAGCTTTTAACATTT 59.486 37.500 0.00 0.00 0.00 2.32
1624 3356 5.163353 ACCGGAGTTGTTTTGATTTGGAATT 60.163 36.000 9.46 0.00 0.00 2.17
1795 3563 1.764054 CTCTCTGAAGGGGGCGGAT 60.764 63.158 0.00 0.00 0.00 4.18
1796 3564 2.364317 CTCTCTGAAGGGGGCGGA 60.364 66.667 0.00 0.00 0.00 5.54
1797 3565 1.965754 CTTCTCTCTGAAGGGGGCGG 61.966 65.000 0.00 0.00 46.25 6.13
1798 3566 1.519719 CTTCTCTCTGAAGGGGGCG 59.480 63.158 0.00 0.00 46.25 6.13
1805 3573 2.936919 TTTGCCAGCTTCTCTCTGAA 57.063 45.000 0.00 0.00 33.54 3.02
1806 3574 2.369860 TCTTTTGCCAGCTTCTCTCTGA 59.630 45.455 0.00 0.00 33.54 3.27
1808 3576 3.145286 GTTCTTTTGCCAGCTTCTCTCT 58.855 45.455 0.00 0.00 0.00 3.10
1809 3577 3.058363 CAGTTCTTTTGCCAGCTTCTCTC 60.058 47.826 0.00 0.00 0.00 3.20
1811 3579 2.030451 CCAGTTCTTTTGCCAGCTTCTC 60.030 50.000 0.00 0.00 0.00 2.87
1812 3580 1.959282 CCAGTTCTTTTGCCAGCTTCT 59.041 47.619 0.00 0.00 0.00 2.85
1813 3581 1.000171 CCCAGTTCTTTTGCCAGCTTC 60.000 52.381 0.00 0.00 0.00 3.86
1814 3582 1.043022 CCCAGTTCTTTTGCCAGCTT 58.957 50.000 0.00 0.00 0.00 3.74
1815 3583 1.466851 GCCCAGTTCTTTTGCCAGCT 61.467 55.000 0.00 0.00 0.00 4.24
1816 3584 1.005748 GCCCAGTTCTTTTGCCAGC 60.006 57.895 0.00 0.00 0.00 4.85
1817 3585 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
1818 3586 0.480690 TAGGCCCAGTTCTTTTGCCA 59.519 50.000 0.00 0.00 44.60 4.92
1967 3759 1.197036 GTACCTTTTCGGCAAGCTGAC 59.803 52.381 2.48 0.00 35.61 3.51
1985 3777 9.953565 AACTGATTTAACAGCTAATGGTTAGTA 57.046 29.630 0.00 0.00 41.06 1.82
2097 3897 1.977129 AGCAATTAAAGGGCTGGCAAA 59.023 42.857 2.88 0.00 36.34 3.68
2146 3959 1.873698 TCAACTTACCACGTTCTGCC 58.126 50.000 0.00 0.00 0.00 4.85
2156 3969 5.755861 GGAGCATCTTACAGATCAACTTACC 59.244 44.000 0.00 0.00 31.32 2.85
2291 4125 1.661112 GTGCTTGATTACTGCCTCGTC 59.339 52.381 0.00 0.00 0.00 4.20
2369 4204 4.446051 GTGAGTGAAGAAGCTTGTACAGAC 59.554 45.833 2.10 0.00 0.00 3.51
2401 4236 1.064758 TGACACCTGGCAAGTTCAGTT 60.065 47.619 0.00 0.00 0.00 3.16
3263 7812 0.401395 TACATAAGAGGGGCCAGGGG 60.401 60.000 4.39 0.00 0.00 4.79
3264 7813 1.059913 CTACATAAGAGGGGCCAGGG 58.940 60.000 4.39 0.00 0.00 4.45
3265 7814 0.398318 GCTACATAAGAGGGGCCAGG 59.602 60.000 4.39 0.00 0.00 4.45
3266 7815 0.398318 GGCTACATAAGAGGGGCCAG 59.602 60.000 4.39 0.00 39.38 4.85
3267 7816 0.327095 TGGCTACATAAGAGGGGCCA 60.327 55.000 4.39 0.00 45.81 5.36
3268 7817 1.003696 GATGGCTACATAAGAGGGGCC 59.996 57.143 0.00 0.00 37.47 5.80
3269 7818 1.003696 GGATGGCTACATAAGAGGGGC 59.996 57.143 0.00 0.00 37.47 5.80
3270 7819 2.338809 TGGATGGCTACATAAGAGGGG 58.661 52.381 0.00 0.00 37.47 4.79
3271 7820 4.288105 AGAATGGATGGCTACATAAGAGGG 59.712 45.833 0.00 0.00 37.47 4.30
3272 7821 5.495926 AGAATGGATGGCTACATAAGAGG 57.504 43.478 0.00 0.00 37.47 3.69
3273 7822 6.293845 GCAAAGAATGGATGGCTACATAAGAG 60.294 42.308 0.00 0.00 37.47 2.85
3274 7823 5.532406 GCAAAGAATGGATGGCTACATAAGA 59.468 40.000 0.00 0.00 37.47 2.10
3275 7824 5.300034 TGCAAAGAATGGATGGCTACATAAG 59.700 40.000 0.00 0.00 37.47 1.73
3276 7825 5.199723 TGCAAAGAATGGATGGCTACATAA 58.800 37.500 0.00 0.00 37.47 1.90
3277 7826 4.790937 TGCAAAGAATGGATGGCTACATA 58.209 39.130 0.00 0.00 37.47 2.29
3278 7827 3.634504 TGCAAAGAATGGATGGCTACAT 58.365 40.909 0.00 0.00 40.85 2.29
3279 7828 3.084536 TGCAAAGAATGGATGGCTACA 57.915 42.857 0.00 0.00 0.00 2.74
3280 7829 4.340381 AGAATGCAAAGAATGGATGGCTAC 59.660 41.667 0.00 0.00 39.46 3.58
3281 7830 4.539726 AGAATGCAAAGAATGGATGGCTA 58.460 39.130 0.00 0.00 39.46 3.93
3282 7831 3.371965 AGAATGCAAAGAATGGATGGCT 58.628 40.909 0.00 0.00 39.46 4.75
3283 7832 3.814005 AGAATGCAAAGAATGGATGGC 57.186 42.857 0.00 0.00 39.46 4.40
3284 7833 4.357142 CGAAGAATGCAAAGAATGGATGG 58.643 43.478 0.00 0.00 39.46 3.51
3285 7834 3.795101 GCGAAGAATGCAAAGAATGGATG 59.205 43.478 0.00 0.00 39.46 3.51
3286 7835 3.444742 TGCGAAGAATGCAAAGAATGGAT 59.555 39.130 0.00 0.00 42.62 3.41
3287 7836 2.819019 TGCGAAGAATGCAAAGAATGGA 59.181 40.909 0.00 0.00 39.87 3.41
3288 7837 3.220507 TGCGAAGAATGCAAAGAATGG 57.779 42.857 0.00 0.00 39.87 3.16
3289 7838 4.417506 TGATGCGAAGAATGCAAAGAATG 58.582 39.130 0.00 0.00 46.87 2.67
3290 7839 4.707030 TGATGCGAAGAATGCAAAGAAT 57.293 36.364 0.00 0.00 46.87 2.40
3291 7840 4.216042 TCTTGATGCGAAGAATGCAAAGAA 59.784 37.500 0.00 0.00 46.87 2.52
3292 7841 3.752747 TCTTGATGCGAAGAATGCAAAGA 59.247 39.130 0.00 0.00 46.87 2.52
3293 7842 4.087510 TCTTGATGCGAAGAATGCAAAG 57.912 40.909 0.00 0.00 46.87 2.77
3294 7843 4.156373 TGATCTTGATGCGAAGAATGCAAA 59.844 37.500 0.00 0.00 46.87 3.68
3295 7844 3.690628 TGATCTTGATGCGAAGAATGCAA 59.309 39.130 0.00 0.00 46.87 4.08
3297 7846 3.547613 GGTGATCTTGATGCGAAGAATGC 60.548 47.826 0.00 0.00 35.60 3.56
3298 7847 3.624410 TGGTGATCTTGATGCGAAGAATG 59.376 43.478 0.00 0.00 35.60 2.67
3299 7848 3.877559 TGGTGATCTTGATGCGAAGAAT 58.122 40.909 0.00 0.00 35.60 2.40
3300 7849 3.333029 TGGTGATCTTGATGCGAAGAA 57.667 42.857 0.00 0.00 35.60 2.52
3301 7850 3.548745 ATGGTGATCTTGATGCGAAGA 57.451 42.857 0.00 0.00 36.41 2.87
3302 7851 3.875727 AGAATGGTGATCTTGATGCGAAG 59.124 43.478 0.00 0.00 0.00 3.79
3303 7852 3.877559 AGAATGGTGATCTTGATGCGAA 58.122 40.909 0.00 0.00 0.00 4.70
3304 7853 3.548745 AGAATGGTGATCTTGATGCGA 57.451 42.857 0.00 0.00 0.00 5.10
3305 7854 3.302935 CGAAGAATGGTGATCTTGATGCG 60.303 47.826 0.00 0.00 37.26 4.73
3306 7855 3.547613 GCGAAGAATGGTGATCTTGATGC 60.548 47.826 0.00 0.00 37.26 3.91
3307 7856 3.624410 TGCGAAGAATGGTGATCTTGATG 59.376 43.478 0.00 0.00 37.26 3.07
3308 7857 3.877559 TGCGAAGAATGGTGATCTTGAT 58.122 40.909 0.00 0.00 37.26 2.57
3309 7858 3.333029 TGCGAAGAATGGTGATCTTGA 57.667 42.857 0.00 0.00 37.26 3.02
3310 7859 4.334759 AGAATGCGAAGAATGGTGATCTTG 59.665 41.667 0.00 0.00 37.26 3.02
3311 7860 4.521146 AGAATGCGAAGAATGGTGATCTT 58.479 39.130 0.00 0.00 39.76 2.40
3312 7861 4.148128 AGAATGCGAAGAATGGTGATCT 57.852 40.909 0.00 0.00 0.00 2.75
3313 7862 4.551603 CGAAGAATGCGAAGAATGGTGATC 60.552 45.833 0.00 0.00 42.52 2.92
3314 7863 3.310774 CGAAGAATGCGAAGAATGGTGAT 59.689 43.478 0.00 0.00 42.52 3.06
3315 7864 2.672874 CGAAGAATGCGAAGAATGGTGA 59.327 45.455 0.00 0.00 42.52 4.02
3316 7865 2.416547 ACGAAGAATGCGAAGAATGGTG 59.583 45.455 0.00 0.00 42.52 4.17
3317 7866 2.673368 GACGAAGAATGCGAAGAATGGT 59.327 45.455 0.00 0.00 42.52 3.55
3318 7867 2.932614 AGACGAAGAATGCGAAGAATGG 59.067 45.455 0.00 0.00 42.52 3.16
3319 7868 4.328440 AGAAGACGAAGAATGCGAAGAATG 59.672 41.667 0.00 0.00 42.52 2.67
3320 7869 4.499183 AGAAGACGAAGAATGCGAAGAAT 58.501 39.130 0.00 0.00 42.52 2.40
3321 7870 3.914312 AGAAGACGAAGAATGCGAAGAA 58.086 40.909 0.00 0.00 42.52 2.52
3322 7871 3.577649 AGAAGACGAAGAATGCGAAGA 57.422 42.857 0.00 0.00 42.52 2.87
3323 7872 5.957910 ATAAGAAGACGAAGAATGCGAAG 57.042 39.130 0.00 0.00 42.52 3.79
3324 7873 9.692749 ATATTATAAGAAGACGAAGAATGCGAA 57.307 29.630 0.00 0.00 42.52 4.70
3358 10315 7.201911 GGGTGCAGGTGCTCTAAAATATATTTT 60.202 37.037 23.28 23.28 41.19 1.82
3359 10316 6.265422 GGGTGCAGGTGCTCTAAAATATATTT 59.735 38.462 4.81 4.81 42.66 1.40
3360 10317 5.770162 GGGTGCAGGTGCTCTAAAATATATT 59.230 40.000 3.18 0.00 42.66 1.28
3362 10319 4.165180 TGGGTGCAGGTGCTCTAAAATATA 59.835 41.667 3.18 0.00 42.66 0.86
3363 10320 3.053693 TGGGTGCAGGTGCTCTAAAATAT 60.054 43.478 3.18 0.00 42.66 1.28
3365 10322 1.075374 TGGGTGCAGGTGCTCTAAAAT 59.925 47.619 3.18 0.00 42.66 1.82
3367 10324 0.036732 CTGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.00 42.66 1.85
3370 10327 3.644606 CCTGGGTGCAGGTGCTCT 61.645 66.667 3.18 0.00 42.66 4.09
3378 10335 3.881926 TAAGAGGGGCCTGGGTGCA 62.882 63.158 0.84 0.00 0.00 4.57
3380 10337 0.695803 AGATAAGAGGGGCCTGGGTG 60.696 60.000 0.84 0.00 0.00 4.61
3381 10338 0.949582 TAGATAAGAGGGGCCTGGGT 59.050 55.000 0.84 0.00 0.00 4.51
3382 10339 1.150135 TCTAGATAAGAGGGGCCTGGG 59.850 57.143 0.84 0.00 0.00 4.45
3383 10340 2.704190 TCTAGATAAGAGGGGCCTGG 57.296 55.000 0.84 0.00 0.00 4.45
3384 10341 7.566879 ACATATATTCTAGATAAGAGGGGCCTG 59.433 40.741 0.84 0.00 35.05 4.85
3385 10342 7.666885 ACATATATTCTAGATAAGAGGGGCCT 58.333 38.462 0.84 0.00 35.05 5.19
3387 10344 8.569641 CGTACATATATTCTAGATAAGAGGGGC 58.430 40.741 0.00 0.00 35.05 5.80
3388 10345 9.848710 TCGTACATATATTCTAGATAAGAGGGG 57.151 37.037 0.00 0.00 35.05 4.79
3407 10364 9.424319 CAGGTGCTCTAAAATATATTCGTACAT 57.576 33.333 0.00 0.00 0.00 2.29
3408 10365 7.384115 GCAGGTGCTCTAAAATATATTCGTACA 59.616 37.037 0.00 0.00 38.21 2.90
3409 10366 7.384115 TGCAGGTGCTCTAAAATATATTCGTAC 59.616 37.037 3.18 0.00 42.66 3.67
3410 10367 7.384115 GTGCAGGTGCTCTAAAATATATTCGTA 59.616 37.037 3.18 0.00 42.66 3.43
3411 10368 6.202954 GTGCAGGTGCTCTAAAATATATTCGT 59.797 38.462 3.18 0.00 42.66 3.85
3412 10369 6.347725 GGTGCAGGTGCTCTAAAATATATTCG 60.348 42.308 3.18 0.00 42.66 3.34
3413 10370 6.072452 GGGTGCAGGTGCTCTAAAATATATTC 60.072 42.308 3.18 0.00 42.66 1.75
3414 10371 5.770162 GGGTGCAGGTGCTCTAAAATATATT 59.230 40.000 3.18 0.00 42.66 1.28
3415 10372 5.163099 TGGGTGCAGGTGCTCTAAAATATAT 60.163 40.000 3.18 0.00 42.66 0.86
3416 10373 4.165180 TGGGTGCAGGTGCTCTAAAATATA 59.835 41.667 3.18 0.00 42.66 0.86
3417 10374 3.053693 TGGGTGCAGGTGCTCTAAAATAT 60.054 43.478 3.18 0.00 42.66 1.28
3418 10375 2.307392 TGGGTGCAGGTGCTCTAAAATA 59.693 45.455 3.18 0.00 42.66 1.40
3419 10376 1.075374 TGGGTGCAGGTGCTCTAAAAT 59.925 47.619 3.18 0.00 42.66 1.82
3420 10377 0.476338 TGGGTGCAGGTGCTCTAAAA 59.524 50.000 3.18 0.00 42.66 1.52
3421 10378 0.036732 CTGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.00 42.66 1.85
3422 10379 1.679311 CTGGGTGCAGGTGCTCTAA 59.321 57.895 3.18 0.00 42.66 2.10
3423 10380 2.293318 CCTGGGTGCAGGTGCTCTA 61.293 63.158 3.18 0.00 42.66 2.43
3424 10381 3.644606 CCTGGGTGCAGGTGCTCT 61.645 66.667 3.18 0.00 42.66 4.09
3432 10389 3.881926 TAAGAGGGGCCTGGGTGCA 62.882 63.158 0.84 0.00 0.00 4.57
3433 10390 2.344878 GATAAGAGGGGCCTGGGTGC 62.345 65.000 0.84 0.00 0.00 5.01
3434 10391 0.695803 AGATAAGAGGGGCCTGGGTG 60.696 60.000 0.84 0.00 0.00 4.61
3435 10392 0.949582 TAGATAAGAGGGGCCTGGGT 59.050 55.000 0.84 0.00 0.00 4.51
3436 10393 1.132689 ACTAGATAAGAGGGGCCTGGG 60.133 57.143 0.84 0.00 0.00 4.45
3437 10394 2.407340 ACTAGATAAGAGGGGCCTGG 57.593 55.000 0.84 0.00 0.00 4.45
3438 10395 3.845860 TGTACTAGATAAGAGGGGCCTG 58.154 50.000 0.84 0.00 0.00 4.85
3439 10396 4.768807 ATGTACTAGATAAGAGGGGCCT 57.231 45.455 0.84 0.00 0.00 5.19
3440 10397 5.544562 AGAAATGTACTAGATAAGAGGGGCC 59.455 44.000 0.00 0.00 0.00 5.80
3441 10398 6.495526 AGAGAAATGTACTAGATAAGAGGGGC 59.504 42.308 0.00 0.00 0.00 5.80
3442 10399 8.485578 AAGAGAAATGTACTAGATAAGAGGGG 57.514 38.462 0.00 0.00 0.00 4.79
3471 10428 9.809096 GAAGACATATTCTATGTGAGAGAAACA 57.191 33.333 4.59 0.00 36.54 2.83
3472 10429 9.809096 TGAAGACATATTCTATGTGAGAGAAAC 57.191 33.333 4.59 0.00 36.54 2.78
3475 10432 9.194972 ACTTGAAGACATATTCTATGTGAGAGA 57.805 33.333 0.00 0.00 34.93 3.10
3476 10433 9.814899 AACTTGAAGACATATTCTATGTGAGAG 57.185 33.333 0.00 0.06 34.93 3.20
3477 10434 9.809096 GAACTTGAAGACATATTCTATGTGAGA 57.191 33.333 0.00 0.00 32.51 3.27
3478 10435 9.591792 TGAACTTGAAGACATATTCTATGTGAG 57.408 33.333 0.00 0.00 32.51 3.51
3479 10436 9.942850 TTGAACTTGAAGACATATTCTATGTGA 57.057 29.630 0.00 0.00 32.51 3.58
3488 10447 7.147976 GCAAAGGTTTGAACTTGAAGACATAT 58.852 34.615 6.63 0.00 40.55 1.78
3494 10453 4.997565 TCTGCAAAGGTTTGAACTTGAAG 58.002 39.130 6.63 0.00 40.55 3.02
3495 10454 5.596836 ATCTGCAAAGGTTTGAACTTGAA 57.403 34.783 6.63 0.00 40.55 2.69
3496 10455 5.360714 AGAATCTGCAAAGGTTTGAACTTGA 59.639 36.000 6.63 0.00 40.55 3.02
3497 10456 5.594926 AGAATCTGCAAAGGTTTGAACTTG 58.405 37.500 6.63 0.00 40.55 3.16
3499 10458 5.859205 AAGAATCTGCAAAGGTTTGAACT 57.141 34.783 6.63 0.00 40.55 3.01
3500 10459 8.593492 AAATAAGAATCTGCAAAGGTTTGAAC 57.407 30.769 6.63 0.00 40.55 3.18
3501 10460 9.044150 CAAAATAAGAATCTGCAAAGGTTTGAA 57.956 29.630 6.63 0.00 40.55 2.69
3503 10462 8.369218 ACAAAATAAGAATCTGCAAAGGTTTG 57.631 30.769 0.00 0.00 41.03 2.93
3506 10465 7.955918 AGAACAAAATAAGAATCTGCAAAGGT 58.044 30.769 0.00 0.00 0.00 3.50
3510 10469 9.985730 AATCAAGAACAAAATAAGAATCTGCAA 57.014 25.926 0.00 0.00 0.00 4.08
3511 10470 9.985730 AAATCAAGAACAAAATAAGAATCTGCA 57.014 25.926 0.00 0.00 0.00 4.41
3551 10559 3.738282 GTGGCAAGATATCTGAAGTAGCG 59.262 47.826 5.86 0.00 0.00 4.26
3559 10726 2.336945 TGGCAGTGGCAAGATATCTG 57.663 50.000 18.31 2.06 43.71 2.90
3561 10728 5.706916 CAAATATGGCAGTGGCAAGATATC 58.293 41.667 24.45 0.00 42.43 1.63
3644 10819 9.502145 AAATCACATACACATAAATTTAGTGCG 57.498 29.630 19.23 13.72 36.76 5.34
3685 10866 2.639347 TGGTCCTTCAAGCTCTGAATCA 59.361 45.455 10.45 6.17 43.20 2.57
3809 12539 9.859427 TCCAACATTATTTTAAAGCTCTTCATG 57.141 29.630 0.00 0.00 0.00 3.07
3869 14440 2.684881 GTTGGATGCAGGTTGGATAGTG 59.315 50.000 0.00 0.00 0.00 2.74
3872 14443 1.922447 AGGTTGGATGCAGGTTGGATA 59.078 47.619 0.00 0.00 0.00 2.59
3873 14444 0.706433 AGGTTGGATGCAGGTTGGAT 59.294 50.000 0.00 0.00 0.00 3.41
3874 14445 0.251297 CAGGTTGGATGCAGGTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
3875 14446 1.880819 GCAGGTTGGATGCAGGTTGG 61.881 60.000 0.00 0.00 43.31 3.77
3876 14447 0.896940 AGCAGGTTGGATGCAGGTTG 60.897 55.000 0.00 0.00 46.31 3.77
3877 14448 0.698238 TAGCAGGTTGGATGCAGGTT 59.302 50.000 0.00 0.00 46.31 3.50
3878 14449 0.921896 ATAGCAGGTTGGATGCAGGT 59.078 50.000 0.00 0.00 46.31 4.00
3879 14450 1.134007 TCATAGCAGGTTGGATGCAGG 60.134 52.381 0.00 0.00 46.31 4.85
3880 14451 2.219458 CTCATAGCAGGTTGGATGCAG 58.781 52.381 0.00 0.00 46.31 4.41
3881 14452 1.134007 CCTCATAGCAGGTTGGATGCA 60.134 52.381 0.00 0.00 46.31 3.96
3882 14453 1.602311 CCTCATAGCAGGTTGGATGC 58.398 55.000 0.00 0.00 44.18 3.91
4304 17286 3.258872 TGCTGCACTTAATTTGCTTGGAT 59.741 39.130 0.00 0.00 40.86 3.41
4571 17554 6.867816 GCACCATTCTTATCATTTGAACAACA 59.132 34.615 0.00 0.00 0.00 3.33
4677 17660 5.125097 GCCCCATTGCTATCATCTGAAATAG 59.875 44.000 6.22 6.22 0.00 1.73
4837 17820 1.202758 ACTGCATTCCGTTCCACAGAA 60.203 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.