Multiple sequence alignment - TraesCS7B01G492600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G492600 chr7B 100.000 3950 0 0 1 3950 744563657 744559708 0.000000e+00 7295
1 TraesCS7B01G492600 chr7B 80.387 362 54 10 876 1226 746762973 746763328 3.920000e-65 259
2 TraesCS7B01G492600 chr7A 94.692 1865 71 8 2108 3950 735169096 735170954 0.000000e+00 2870
3 TraesCS7B01G492600 chr7A 90.639 1816 100 25 295 2065 735167305 735169095 0.000000e+00 2348
4 TraesCS7B01G492600 chr7A 81.492 362 52 8 876 1226 735031048 735030691 2.320000e-72 283
5 TraesCS7B01G492600 chr7A 86.700 203 16 7 1 202 735166891 735167083 8.600000e-52 215
6 TraesCS7B01G492600 chr7A 86.508 126 15 2 496 620 735038172 735038048 1.910000e-28 137
7 TraesCS7B01G492600 chr7A 90.426 94 9 0 3844 3937 30660909 30660816 1.490000e-24 124
8 TraesCS7B01G492600 chr7D 93.441 1418 80 9 1847 3262 632398362 632396956 0.000000e+00 2091
9 TraesCS7B01G492600 chr7D 88.623 1169 88 18 355 1499 632401125 632399978 0.000000e+00 1380
10 TraesCS7B01G492600 chr7D 89.688 320 12 7 1 299 632401808 632401489 4.790000e-104 388
11 TraesCS7B01G492600 chr7D 95.266 169 5 3 1555 1722 632399695 632399529 8.420000e-67 265
12 TraesCS7B01G492600 chr7D 85.922 206 13 9 1709 1900 632399505 632399302 5.170000e-49 206
13 TraesCS7B01G492600 chr7D 89.109 101 11 0 3848 3948 390686588 390686488 4.140000e-25 126
14 TraesCS7B01G492600 chr7D 81.595 163 14 5 3296 3457 632396955 632396808 1.930000e-23 121
15 TraesCS7B01G492600 chr3B 83.659 973 143 11 1960 2926 11467050 11468012 0.000000e+00 902
16 TraesCS7B01G492600 chr3B 86.538 104 14 0 3845 3948 615875806 615875909 8.970000e-22 115
17 TraesCS7B01G492600 chr4B 82.300 1000 169 5 2011 3010 663105790 663106781 0.000000e+00 859
18 TraesCS7B01G492600 chr4B 83.096 491 71 6 986 1467 663102586 663103073 1.690000e-118 436
19 TraesCS7B01G492600 chr4B 86.458 96 13 0 3851 3946 29711802 29711707 5.400000e-19 106
20 TraesCS7B01G492600 chr3D 81.377 886 152 10 1960 2843 9118000 9118874 0.000000e+00 710
21 TraesCS7B01G492600 chr1D 90.526 95 9 0 3843 3937 385050863 385050957 4.140000e-25 126
22 TraesCS7B01G492600 chr6D 91.209 91 6 2 3848 3937 392266450 392266361 5.360000e-24 122
23 TraesCS7B01G492600 chr6B 86.667 90 12 0 3848 3937 218671054 218671143 2.510000e-17 100
24 TraesCS7B01G492600 chr5A 84.314 102 16 0 3848 3949 631719680 631719579 2.510000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G492600 chr7B 744559708 744563657 3949 True 7295.000000 7295 100.000000 1 3950 1 chr7B.!!$R1 3949
1 TraesCS7B01G492600 chr7A 735166891 735170954 4063 False 1811.000000 2870 90.677000 1 3950 3 chr7A.!!$F1 3949
2 TraesCS7B01G492600 chr7D 632396808 632401808 5000 True 741.833333 2091 89.089167 1 3457 6 chr7D.!!$R2 3456
3 TraesCS7B01G492600 chr3B 11467050 11468012 962 False 902.000000 902 83.659000 1960 2926 1 chr3B.!!$F1 966
4 TraesCS7B01G492600 chr4B 663102586 663106781 4195 False 647.500000 859 82.698000 986 3010 2 chr4B.!!$F1 2024
5 TraesCS7B01G492600 chr3D 9118000 9118874 874 False 710.000000 710 81.377000 1960 2843 1 chr3D.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 1152 0.676466 TCAATGTGCGCTTACTGGGG 60.676 55.000 9.73 0.00 0.0 4.96 F
1032 1461 1.098712 TTGCACGCCGAAGAAAACCT 61.099 50.000 0.00 0.00 0.0 3.50 F
1197 1641 1.152756 AAAGGTTGTCAAGGCGGCT 60.153 52.632 5.25 5.25 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 6467 1.116536 TCGTGTCTGCCACAGGGTAA 61.117 55.000 5.93 0.0 44.78 2.85 R
2790 6722 0.336737 AGTCGAAGGAGATGTCCCCT 59.663 55.000 5.02 0.0 45.26 4.79 R
3268 7202 4.020662 TCTCTCTGCTTCCTTCTTTCCTTC 60.021 45.833 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.820871 GGAGTCCTCTGTGCCACTAG 59.179 60.000 0.41 0.00 0.00 2.57
49 50 1.127567 TCTGTGCCACTAGCCCACTT 61.128 55.000 0.00 0.00 42.71 3.16
51 52 1.073199 GTGCCACTAGCCCACTTGT 59.927 57.895 0.00 0.00 42.71 3.16
167 188 5.105392 GGTCCATATGCAATCAAAAACTGGA 60.105 40.000 0.00 0.00 0.00 3.86
169 190 6.873076 GTCCATATGCAATCAAAAACTGGAAA 59.127 34.615 0.00 0.00 32.46 3.13
170 191 7.550196 GTCCATATGCAATCAAAAACTGGAAAT 59.450 33.333 0.00 0.00 32.46 2.17
171 192 8.756927 TCCATATGCAATCAAAAACTGGAAATA 58.243 29.630 0.00 0.00 0.00 1.40
172 193 9.550406 CCATATGCAATCAAAAACTGGAAATAT 57.450 29.630 0.00 0.00 0.00 1.28
325 488 1.405821 CCCTCTACCGCTACTGACTTG 59.594 57.143 0.00 0.00 0.00 3.16
353 516 7.344134 TGTAGTTCTGCTAGTTAGAGTGGATA 58.656 38.462 0.00 0.00 0.00 2.59
507 927 1.271001 TGTCGTCGGACTCTCCACTAA 60.271 52.381 6.57 0.00 43.79 2.24
571 991 4.165565 AGATTCCTTCTCATCAGGCAATGA 59.834 41.667 3.07 3.07 43.70 2.57
575 995 4.066490 CCTTCTCATCAGGCAATGATCTC 58.934 47.826 0.90 0.00 46.01 2.75
650 1074 6.042093 CCCGAGCCTATATAATATCATGTGGT 59.958 42.308 0.00 0.00 0.00 4.16
653 1077 7.649705 CGAGCCTATATAATATCATGTGGTGAC 59.350 40.741 0.00 0.00 40.28 3.67
665 1089 2.701107 TGTGGTGACAAGACGTTTTCA 58.299 42.857 0.00 0.00 46.06 2.69
716 1140 5.959527 CCGTTGAATATCGAGTTTCAATGTG 59.040 40.000 26.77 19.81 42.93 3.21
728 1152 0.676466 TCAATGTGCGCTTACTGGGG 60.676 55.000 9.73 0.00 0.00 4.96
750 1174 5.475719 GGATAAATGAATGGCATGTGGATG 58.524 41.667 0.00 0.00 37.28 3.51
759 1183 6.154877 TGAATGGCATGTGGATGAACTTATTT 59.845 34.615 0.00 0.00 0.00 1.40
760 1184 5.327616 TGGCATGTGGATGAACTTATTTG 57.672 39.130 0.00 0.00 0.00 2.32
761 1185 4.114794 GGCATGTGGATGAACTTATTTGC 58.885 43.478 0.00 0.00 0.00 3.68
762 1186 4.381825 GGCATGTGGATGAACTTATTTGCA 60.382 41.667 0.00 0.00 0.00 4.08
764 1188 5.712004 CATGTGGATGAACTTATTTGCACA 58.288 37.500 0.00 0.00 43.11 4.57
809 1233 5.880054 TGCAGTATCTTGTCTTTTAAGCC 57.120 39.130 0.00 0.00 0.00 4.35
888 1314 3.254411 GCTGAAGCCTATAAATTGAGGGC 59.746 47.826 2.25 2.25 42.74 5.19
895 1321 4.447180 GCCTATAAATTGAGGGCCCTTACA 60.447 45.833 29.39 18.47 37.12 2.41
897 1323 2.990740 AAATTGAGGGCCCTTACACA 57.009 45.000 29.39 17.18 0.00 3.72
938 1364 4.263727 TGCCCTGTGTCCATTACATAAGTT 60.264 41.667 0.00 0.00 41.10 2.66
954 1380 3.420839 AAGTTGAAGAACAAACCAGCG 57.579 42.857 0.00 0.00 40.36 5.18
960 1386 1.583054 AGAACAAACCAGCGACTCAC 58.417 50.000 0.00 0.00 0.00 3.51
961 1387 1.134521 AGAACAAACCAGCGACTCACA 60.135 47.619 0.00 0.00 0.00 3.58
979 1405 4.004982 TCACATACGCACTACACTAGACA 58.995 43.478 0.00 0.00 0.00 3.41
980 1406 4.096311 CACATACGCACTACACTAGACAC 58.904 47.826 0.00 0.00 0.00 3.67
981 1407 4.008330 ACATACGCACTACACTAGACACT 58.992 43.478 0.00 0.00 0.00 3.55
982 1408 4.094590 ACATACGCACTACACTAGACACTC 59.905 45.833 0.00 0.00 0.00 3.51
986 1412 3.082548 GCACTACACTAGACACTCCTCA 58.917 50.000 0.00 0.00 0.00 3.86
992 1421 8.132362 CACTACACTAGACACTCCTCATTATTC 58.868 40.741 0.00 0.00 0.00 1.75
1014 1443 2.901839 AGCAAAGATGGCATCCTTTGTT 59.098 40.909 30.53 26.88 46.50 2.83
1020 1449 1.734117 GGCATCCTTTGTTGCACGC 60.734 57.895 0.00 0.00 38.65 5.34
1023 1452 1.599518 ATCCTTTGTTGCACGCCGA 60.600 52.632 0.00 0.00 0.00 5.54
1032 1461 1.098712 TTGCACGCCGAAGAAAACCT 61.099 50.000 0.00 0.00 0.00 3.50
1185 1629 1.741327 CTGCCACTGCTGCAAAGGTT 61.741 55.000 17.87 0.00 38.46 3.50
1197 1641 1.152756 AAAGGTTGTCAAGGCGGCT 60.153 52.632 5.25 5.25 0.00 5.52
1227 1671 1.884075 CGCTGGTGCACTACTACCCA 61.884 60.000 17.98 3.02 39.64 4.51
1567 3552 6.585695 TCTAGTTACGATGGTTCAAAGTCT 57.414 37.500 0.00 0.00 0.00 3.24
1822 4751 8.908903 TCAACATGTACAATACCAAAGAAAACT 58.091 29.630 0.00 0.00 0.00 2.66
1991 5923 8.520258 CCGCTTTACAACATTATTAACATTTCG 58.480 33.333 0.00 0.00 0.00 3.46
2190 6122 3.947173 AGGGAGATCCTGACAGCG 58.053 61.111 0.00 0.00 46.07 5.18
2446 6378 1.907739 GGCTATGAGCACCACCAGA 59.092 57.895 0.21 0.00 44.75 3.86
3061 6993 3.368116 GCAACTATGTAGGTGAGGTCGTT 60.368 47.826 9.20 0.00 43.66 3.85
3108 7040 9.744125 ATAAAGTGCCCCCTCTCAATATATATA 57.256 33.333 0.00 0.00 0.00 0.86
3183 7115 2.281761 CCCACTGCTTGTCCGCTT 60.282 61.111 0.00 0.00 0.00 4.68
3268 7202 1.069022 CAACTGATTTGGCACACCTCG 60.069 52.381 0.00 0.00 39.29 4.63
3284 7218 2.289756 ACCTCGAAGGAAAGAAGGAAGC 60.290 50.000 7.76 0.00 37.67 3.86
3308 7242 2.441001 AGAGATGGGAGTAAATGGCAGG 59.559 50.000 0.00 0.00 0.00 4.85
3348 7282 3.507103 TGGCATGATTCGTTCATTTGG 57.493 42.857 0.00 0.00 42.62 3.28
3390 7325 0.955919 GAACAGCCTTGAACCCCGAG 60.956 60.000 0.00 0.00 0.00 4.63
3445 7380 3.802139 TCGCTTAGATCGGTAGCAATTTG 59.198 43.478 14.29 0.00 34.62 2.32
3472 7407 3.473625 TGATTCGCATGAGATCATTGCT 58.526 40.909 0.00 0.00 33.61 3.91
3485 7420 4.910304 AGATCATTGCTAACCTGATAGGGT 59.090 41.667 0.00 0.00 40.58 4.34
3496 7431 4.219115 ACCTGATAGGGTCATGAGTACAG 58.781 47.826 0.00 0.86 40.58 2.74
3656 7591 0.250467 CCAATATGAGGTGGAGGGCG 60.250 60.000 0.00 0.00 37.03 6.13
3707 7642 1.810030 GGGTGACGGCGATGAAGAC 60.810 63.158 16.62 0.00 0.00 3.01
3726 7672 1.949525 ACGTCTGCTGCTCATTTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
3767 7713 5.836024 TTGTAAGACTTGGTTCCTGGTAT 57.164 39.130 0.00 0.00 0.00 2.73
3789 7735 2.750637 GGAGAGTCCTCGCGGTGA 60.751 66.667 6.13 0.00 40.33 4.02
3806 7752 2.243810 GTGATAGCCTCGGAGATTCCT 58.756 52.381 6.58 0.13 33.30 3.36
3815 7761 4.125703 CCTCGGAGATTCCTTCATTTGAG 58.874 47.826 6.58 0.00 33.30 3.02
3822 7768 7.413438 CGGAGATTCCTTCATTTGAGTAAACTG 60.413 40.741 0.00 0.00 33.30 3.16
3827 7773 5.827797 TCCTTCATTTGAGTAAACTGCAACT 59.172 36.000 0.00 0.00 0.00 3.16
3892 7848 7.171848 GTGCATAGAAAAATAAACCGGGTTTTT 59.828 33.333 28.50 18.85 37.01 1.94
3897 7853 7.773864 GAAAAATAAACCGGGTTTTTCTGAA 57.226 32.000 28.50 11.38 43.37 3.02
3901 7857 4.906065 AAACCGGGTTTTTCTGAAGTAC 57.094 40.909 19.22 0.00 31.10 2.73
3906 7862 3.881089 CGGGTTTTTCTGAAGTACCAGTT 59.119 43.478 18.64 0.00 35.71 3.16
3916 7872 8.660295 TTCTGAAGTACCAGTTCCTATTTCTA 57.340 34.615 0.00 0.00 35.71 2.10
3917 7873 8.064336 TCTGAAGTACCAGTTCCTATTTCTAC 57.936 38.462 0.00 0.00 35.71 2.59
3919 7875 8.197592 TGAAGTACCAGTTCCTATTTCTACAA 57.802 34.615 0.00 0.00 0.00 2.41
3920 7876 8.311836 TGAAGTACCAGTTCCTATTTCTACAAG 58.688 37.037 0.00 0.00 0.00 3.16
3924 7880 7.554959 ACCAGTTCCTATTTCTACAAGAGAA 57.445 36.000 0.00 0.00 42.69 2.87
3937 7893 8.836268 TTCTACAAGAGAAACGCCTAATTAAA 57.164 30.769 0.00 0.00 41.39 1.52
3938 7894 9.444600 TTCTACAAGAGAAACGCCTAATTAAAT 57.555 29.630 0.00 0.00 41.39 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.883833 CACCTTCATCACAAGTGGGC 59.116 55.000 0.00 0.00 0.00 5.36
49 50 0.888736 CGGGCAACACCTTCATCACA 60.889 55.000 0.00 0.00 39.10 3.58
51 52 0.327924 ATCGGGCAACACCTTCATCA 59.672 50.000 0.00 0.00 39.10 3.07
299 384 1.962100 AGTAGCGGTAGAGGGTAATGC 59.038 52.381 0.00 0.00 0.00 3.56
300 385 3.004524 GTCAGTAGCGGTAGAGGGTAATG 59.995 52.174 0.00 0.00 35.49 1.90
325 488 6.586844 CCACTCTAACTAGCAGAACTACAAAC 59.413 42.308 0.00 0.00 0.00 2.93
369 767 1.133637 ACATGGTGTGGGCAAGTGTAA 60.134 47.619 0.00 0.00 0.00 2.41
507 927 3.515602 AACTGTCATCAAGCCTTTCCT 57.484 42.857 0.00 0.00 0.00 3.36
512 932 4.074970 CAACCTTAACTGTCATCAAGCCT 58.925 43.478 0.00 0.00 0.00 4.58
547 967 5.367644 TCATTGCCTGATGAGAAGGAATCTA 59.632 40.000 0.00 0.00 38.96 1.98
550 970 4.515028 TCATTGCCTGATGAGAAGGAAT 57.485 40.909 0.00 0.00 36.91 3.01
561 981 1.469767 CGTGTCGAGATCATTGCCTGA 60.470 52.381 0.00 0.00 38.53 3.86
563 983 0.817654 TCGTGTCGAGATCATTGCCT 59.182 50.000 0.00 0.00 0.00 4.75
575 995 1.067142 TCTTCCCCAAATCTCGTGTCG 60.067 52.381 0.00 0.00 0.00 4.35
650 1074 2.948979 AGGCAATGAAAACGTCTTGTCA 59.051 40.909 0.00 0.00 0.00 3.58
653 1077 2.053627 GCAGGCAATGAAAACGTCTTG 58.946 47.619 0.00 0.00 0.00 3.02
716 1140 2.846193 TCATTTATCCCCAGTAAGCGC 58.154 47.619 0.00 0.00 0.00 5.92
728 1152 6.335471 TCATCCACATGCCATTCATTTATC 57.665 37.500 0.00 0.00 31.79 1.75
750 1174 4.483476 ACGGAACTGTGCAAATAAGTTC 57.517 40.909 17.90 17.90 45.87 3.01
759 1183 0.107410 ACTTCCAACGGAACTGTGCA 60.107 50.000 0.00 0.00 36.71 4.57
760 1184 1.021968 AACTTCCAACGGAACTGTGC 58.978 50.000 0.00 0.00 36.71 4.57
761 1185 1.268539 GCAACTTCCAACGGAACTGTG 60.269 52.381 0.00 0.00 36.71 3.66
762 1186 1.021968 GCAACTTCCAACGGAACTGT 58.978 50.000 0.00 0.00 36.71 3.55
764 1188 1.981256 ATGCAACTTCCAACGGAACT 58.019 45.000 0.00 0.00 36.71 3.01
790 1214 9.780186 GTATATGGGCTTAAAAGACAAGATACT 57.220 33.333 9.55 0.00 35.04 2.12
809 1233 1.712056 TCCCAGGTCCACGTATATGG 58.288 55.000 0.00 0.00 41.57 2.74
888 1314 5.436175 TGTCATGTGGATATTGTGTAAGGG 58.564 41.667 0.00 0.00 0.00 3.95
895 1321 3.379372 GCAGCTTGTCATGTGGATATTGT 59.621 43.478 0.00 0.00 0.00 2.71
897 1323 2.954318 GGCAGCTTGTCATGTGGATATT 59.046 45.455 0.00 0.00 0.00 1.28
938 1364 2.210116 GAGTCGCTGGTTTGTTCTTCA 58.790 47.619 0.00 0.00 0.00 3.02
954 1380 3.489180 AGTGTAGTGCGTATGTGAGTC 57.511 47.619 0.00 0.00 0.00 3.36
960 1386 4.496010 GGAGTGTCTAGTGTAGTGCGTATG 60.496 50.000 0.00 0.00 0.00 2.39
961 1387 3.626670 GGAGTGTCTAGTGTAGTGCGTAT 59.373 47.826 0.00 0.00 0.00 3.06
979 1405 5.826737 CCATCTTTGCTGAATAATGAGGAGT 59.173 40.000 0.00 0.00 0.00 3.85
980 1406 5.278364 GCCATCTTTGCTGAATAATGAGGAG 60.278 44.000 0.00 0.00 0.00 3.69
981 1407 4.581824 GCCATCTTTGCTGAATAATGAGGA 59.418 41.667 0.00 0.00 0.00 3.71
982 1408 4.340097 TGCCATCTTTGCTGAATAATGAGG 59.660 41.667 0.00 0.00 0.00 3.86
986 1412 5.145564 AGGATGCCATCTTTGCTGAATAAT 58.854 37.500 4.41 0.00 0.00 1.28
992 1421 2.888594 CAAAGGATGCCATCTTTGCTG 58.111 47.619 2.51 0.00 41.88 4.41
1014 1443 1.525077 AGGTTTTCTTCGGCGTGCA 60.525 52.632 6.85 0.00 0.00 4.57
1020 1449 1.071605 CGAGCTCAGGTTTTCTTCGG 58.928 55.000 15.40 0.00 0.00 4.30
1023 1452 1.230324 GCACGAGCTCAGGTTTTCTT 58.770 50.000 15.40 0.00 37.91 2.52
1251 1695 0.676782 CAACTAGCTTTCCCCCGGTG 60.677 60.000 0.00 0.00 0.00 4.94
1252 1696 1.131928 ACAACTAGCTTTCCCCCGGT 61.132 55.000 0.00 0.00 0.00 5.28
1254 1698 0.739813 CGACAACTAGCTTTCCCCCG 60.740 60.000 0.00 0.00 0.00 5.73
1350 1794 2.668632 CATGGGTACGGTGGCAGT 59.331 61.111 0.00 0.00 0.00 4.40
1796 4725 8.908903 AGTTTTCTTTGGTATTGTACATGTTGA 58.091 29.630 2.30 0.00 0.00 3.18
2190 6122 1.999071 TTATTTGCGGTGGGATGCGC 61.999 55.000 0.00 0.00 0.00 6.09
2535 6467 1.116536 TCGTGTCTGCCACAGGGTAA 61.117 55.000 5.93 0.00 44.78 2.85
2775 6707 0.991355 CCCCTACCATGGGTAAGCCA 60.991 60.000 18.09 0.00 45.70 4.75
2790 6722 0.336737 AGTCGAAGGAGATGTCCCCT 59.663 55.000 5.02 0.00 45.26 4.79
3268 7202 4.020662 TCTCTCTGCTTCCTTCTTTCCTTC 60.021 45.833 0.00 0.00 0.00 3.46
3284 7218 3.135348 TGCCATTTACTCCCATCTCTCTG 59.865 47.826 0.00 0.00 0.00 3.35
3308 7242 4.142600 GCCAAAACATACATGACTCACTCC 60.143 45.833 0.00 0.00 0.00 3.85
3348 7282 3.489785 CAGCGAATCCGGTAACTATGAAC 59.510 47.826 0.00 0.00 45.57 3.18
3451 7386 3.473625 AGCAATGATCTCATGCGAATCA 58.526 40.909 10.75 6.86 36.56 2.57
3457 7392 4.132336 TCAGGTTAGCAATGATCTCATGC 58.868 43.478 9.12 9.12 36.56 4.06
3461 7396 5.012561 ACCCTATCAGGTTAGCAATGATCTC 59.987 44.000 0.00 0.00 36.44 2.75
3472 7407 5.773091 TGTACTCATGACCCTATCAGGTTA 58.227 41.667 0.00 0.00 41.91 2.85
3485 7420 1.133216 GTCGAGCTGCTGTACTCATGA 59.867 52.381 7.01 0.00 32.98 3.07
3510 7445 2.455674 TGCTGTTGTGTAGCTACTGG 57.544 50.000 23.84 9.05 41.66 4.00
3556 7491 1.269723 TCCTTGCGCCATATAGAGTCG 59.730 52.381 4.18 0.00 0.00 4.18
3559 7494 2.027745 ACCATCCTTGCGCCATATAGAG 60.028 50.000 4.18 0.00 0.00 2.43
3560 7495 1.977854 ACCATCCTTGCGCCATATAGA 59.022 47.619 4.18 0.00 0.00 1.98
3632 7567 1.142465 CTCCACCTCATATTGGCTGCT 59.858 52.381 0.00 0.00 32.37 4.24
3688 7623 2.511600 CTTCATCGCCGTCACCCC 60.512 66.667 0.00 0.00 0.00 4.95
3707 7642 2.313234 CAAACAAATGAGCAGCAGACG 58.687 47.619 0.00 0.00 0.00 4.18
3726 7672 3.636300 ACAAACCTTATTCAAGCACAGCA 59.364 39.130 0.00 0.00 0.00 4.41
3767 7713 2.750637 GCGAGGACTCTCCGGTGA 60.751 66.667 6.00 6.00 42.75 4.02
3789 7735 2.964209 TGAAGGAATCTCCGAGGCTAT 58.036 47.619 0.00 0.00 42.75 2.97
3806 7752 7.491048 GGAAAAGTTGCAGTTTACTCAAATGAA 59.509 33.333 0.00 0.00 0.00 2.57
3815 7761 4.116961 GGTTGGGAAAAGTTGCAGTTTAC 58.883 43.478 0.00 0.00 0.00 2.01
3822 7768 1.484653 ACTTGGGTTGGGAAAAGTTGC 59.515 47.619 0.00 0.00 28.57 4.17
3827 7773 4.156477 CCTCATAACTTGGGTTGGGAAAA 58.844 43.478 0.00 0.00 36.92 2.29
3892 7848 7.672660 TGTAGAAATAGGAACTGGTACTTCAGA 59.327 37.037 6.18 0.00 41.52 3.27
3897 7853 7.894364 TCTCTTGTAGAAATAGGAACTGGTACT 59.106 37.037 0.00 0.00 41.52 2.73
3916 7872 7.448748 ACATTTAATTAGGCGTTTCTCTTGT 57.551 32.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.