Multiple sequence alignment - TraesCS7B01G491700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G491700 chr7B 100.000 5819 0 0 1 5819 744261813 744255995 0.000000e+00 10746.0
1 TraesCS7B01G491700 chr7B 90.588 4250 345 36 713 4942 743737914 743742128 0.000000e+00 5581.0
2 TraesCS7B01G491700 chr7B 86.849 4319 484 43 865 5114 743814798 743819101 0.000000e+00 4752.0
3 TraesCS7B01G491700 chr7B 85.214 3341 433 44 676 3987 744110922 744107614 0.000000e+00 3376.0
4 TraesCS7B01G491700 chr7B 83.165 2281 351 23 2013 4282 746738709 746740967 0.000000e+00 2054.0
5 TraesCS7B01G491700 chr7B 84.872 1018 115 18 790 1788 746531488 746530491 0.000000e+00 990.0
6 TraesCS7B01G491700 chr7B 86.089 877 114 6 1525 2396 744348057 744348930 0.000000e+00 937.0
7 TraesCS7B01G491700 chr7B 82.543 928 148 13 4026 4947 744107617 744106698 0.000000e+00 804.0
8 TraesCS7B01G491700 chr7B 78.425 1219 243 17 1786 2994 746528366 746527158 0.000000e+00 776.0
9 TraesCS7B01G491700 chr7B 95.473 486 6 4 5237 5716 743819099 743819574 0.000000e+00 761.0
10 TraesCS7B01G491700 chr7B 86.727 663 64 18 1 652 743814090 743814739 0.000000e+00 715.0
11 TraesCS7B01G491700 chr7B 78.388 1129 198 27 3742 4840 744312251 744313363 0.000000e+00 691.0
12 TraesCS7B01G491700 chr7B 99.696 329 1 0 5412 5740 744276867 744276539 2.320000e-168 603.0
13 TraesCS7B01G491700 chr7B 84.399 641 68 14 796 1431 744347440 744348053 8.340000e-168 601.0
14 TraesCS7B01G491700 chr7B 79.677 620 103 19 4341 4947 746740970 746741579 5.390000e-115 425.0
15 TraesCS7B01G491700 chr7B 86.071 280 32 5 3667 3941 743719854 743719577 1.590000e-75 294.0
16 TraesCS7B01G491700 chr7B 90.728 151 13 1 160 309 746531753 746531603 3.560000e-47 200.0
17 TraesCS7B01G491700 chr7B 96.923 65 2 0 713 777 743814737 743814801 6.160000e-20 110.0
18 TraesCS7B01G491700 chr7A 83.982 3958 545 40 955 4873 736340645 736344552 0.000000e+00 3714.0
19 TraesCS7B01G491700 chr7A 83.190 928 144 8 4025 4947 736292836 736293756 0.000000e+00 839.0
20 TraesCS7B01G491700 chr7A 81.618 680 103 16 4274 4942 736259136 736259804 1.430000e-150 544.0
21 TraesCS7B01G491700 chr7A 91.437 327 26 2 3894 4219 736258812 736259137 1.150000e-121 448.0
22 TraesCS7B01G491700 chr7A 84.774 243 30 4 3668 3903 736085481 736085723 2.710000e-58 237.0
23 TraesCS7B01G491700 chr7A 85.333 225 27 5 4724 4947 735814131 735814350 1.630000e-55 228.0
24 TraesCS7B01G491700 chr7A 90.299 134 10 3 5113 5245 227137676 227137807 7.750000e-39 172.0
25 TraesCS7B01G491700 chr7A 97.059 34 1 0 4916 4949 736085864 736085897 2.260000e-04 58.4
26 TraesCS7B01G491700 chr7A 97.059 34 1 0 4916 4949 736321823 736321856 2.260000e-04 58.4
27 TraesCS7B01G491700 chr4A 73.111 3786 868 110 1100 4801 735487850 735484131 0.000000e+00 1214.0
28 TraesCS7B01G491700 chr4A 72.851 3757 881 103 1119 4798 735003545 735007239 0.000000e+00 1158.0
29 TraesCS7B01G491700 chr4A 73.531 2195 489 60 1119 3261 734582756 734584910 0.000000e+00 750.0
30 TraesCS7B01G491700 chr4A 72.502 1291 282 50 1670 2932 734845728 734846973 3.340000e-92 350.0
31 TraesCS7B01G491700 chr1D 76.942 1982 405 34 1036 2996 459031427 459029477 0.000000e+00 1081.0
32 TraesCS7B01G491700 chr5B 83.101 1148 186 7 3049 4192 604164984 604166127 0.000000e+00 1038.0
33 TraesCS7B01G491700 chr5B 90.840 131 10 2 5111 5240 626068694 626068823 2.160000e-39 174.0
34 TraesCS7B01G491700 chr5B 86.928 153 11 7 5096 5243 105773024 105773172 4.670000e-36 163.0
35 TraesCS7B01G491700 chr1B 76.423 1985 419 34 1036 2994 631203716 631201755 0.000000e+00 1027.0
36 TraesCS7B01G491700 chr1B 90.909 132 10 2 5113 5243 601258969 601258839 5.990000e-40 176.0
37 TraesCS7B01G491700 chr1B 90.370 135 10 3 5113 5245 151841246 151841113 2.160000e-39 174.0
38 TraesCS7B01G491700 chr1A 76.262 2001 429 35 1022 2996 551463642 551461662 0.000000e+00 1022.0
39 TraesCS7B01G491700 chr7D 73.012 2716 628 85 2142 4801 5459007 5456341 0.000000e+00 857.0
40 TraesCS7B01G491700 chr7D 85.324 695 61 13 4021 4714 632042672 632042018 0.000000e+00 680.0
41 TraesCS7B01G491700 chr7D 88.660 194 22 0 2828 3021 632042856 632042663 2.710000e-58 237.0
42 TraesCS7B01G491700 chr7D 83.333 114 17 2 4195 4307 632041310 632041198 2.870000e-18 104.0
43 TraesCS7B01G491700 chr6A 78.546 1142 177 38 3331 4457 540847200 540846112 0.000000e+00 689.0
44 TraesCS7B01G491700 chr3D 91.538 130 9 2 5112 5240 11338052 11337924 1.670000e-40 178.0
45 TraesCS7B01G491700 chr3D 84.024 169 19 7 5110 5273 433502882 433503047 7.810000e-34 156.0
46 TraesCS7B01G491700 chr3A 89.630 135 14 0 5109 5243 724873340 724873474 7.750000e-39 172.0
47 TraesCS7B01G491700 chr5D 87.248 149 15 4 5093 5239 266853542 266853396 3.610000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G491700 chr7B 744255995 744261813 5818 True 10746.000000 10746 100.000000 1 5819 1 chr7B.!!$R2 5818
1 TraesCS7B01G491700 chr7B 743737914 743742128 4214 False 5581.000000 5581 90.588000 713 4942 1 chr7B.!!$F1 4229
2 TraesCS7B01G491700 chr7B 744106698 744110922 4224 True 2090.000000 3376 83.878500 676 4947 2 chr7B.!!$R4 4271
3 TraesCS7B01G491700 chr7B 743814090 743819574 5484 False 1584.500000 4752 91.493000 1 5716 4 chr7B.!!$F3 5715
4 TraesCS7B01G491700 chr7B 746738709 746741579 2870 False 1239.500000 2054 81.421000 2013 4947 2 chr7B.!!$F5 2934
5 TraesCS7B01G491700 chr7B 744347440 744348930 1490 False 769.000000 937 85.244000 796 2396 2 chr7B.!!$F4 1600
6 TraesCS7B01G491700 chr7B 744312251 744313363 1112 False 691.000000 691 78.388000 3742 4840 1 chr7B.!!$F2 1098
7 TraesCS7B01G491700 chr7B 746527158 746531753 4595 True 655.333333 990 84.675000 160 2994 3 chr7B.!!$R5 2834
8 TraesCS7B01G491700 chr7A 736340645 736344552 3907 False 3714.000000 3714 83.982000 955 4873 1 chr7A.!!$F5 3918
9 TraesCS7B01G491700 chr7A 736292836 736293756 920 False 839.000000 839 83.190000 4025 4947 1 chr7A.!!$F3 922
10 TraesCS7B01G491700 chr7A 736258812 736259804 992 False 496.000000 544 86.527500 3894 4942 2 chr7A.!!$F7 1048
11 TraesCS7B01G491700 chr4A 735484131 735487850 3719 True 1214.000000 1214 73.111000 1100 4801 1 chr4A.!!$R1 3701
12 TraesCS7B01G491700 chr4A 735003545 735007239 3694 False 1158.000000 1158 72.851000 1119 4798 1 chr4A.!!$F3 3679
13 TraesCS7B01G491700 chr4A 734582756 734584910 2154 False 750.000000 750 73.531000 1119 3261 1 chr4A.!!$F1 2142
14 TraesCS7B01G491700 chr4A 734845728 734846973 1245 False 350.000000 350 72.502000 1670 2932 1 chr4A.!!$F2 1262
15 TraesCS7B01G491700 chr1D 459029477 459031427 1950 True 1081.000000 1081 76.942000 1036 2996 1 chr1D.!!$R1 1960
16 TraesCS7B01G491700 chr5B 604164984 604166127 1143 False 1038.000000 1038 83.101000 3049 4192 1 chr5B.!!$F2 1143
17 TraesCS7B01G491700 chr1B 631201755 631203716 1961 True 1027.000000 1027 76.423000 1036 2994 1 chr1B.!!$R3 1958
18 TraesCS7B01G491700 chr1A 551461662 551463642 1980 True 1022.000000 1022 76.262000 1022 2996 1 chr1A.!!$R1 1974
19 TraesCS7B01G491700 chr7D 5456341 5459007 2666 True 857.000000 857 73.012000 2142 4801 1 chr7D.!!$R1 2659
20 TraesCS7B01G491700 chr7D 632041198 632042856 1658 True 340.333333 680 85.772333 2828 4714 3 chr7D.!!$R2 1886
21 TraesCS7B01G491700 chr6A 540846112 540847200 1088 True 689.000000 689 78.546000 3331 4457 1 chr6A.!!$R1 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.035725 CTTGGTCATCCTGCAGCTCA 60.036 55.000 8.66 0.00 34.23 4.26 F
560 603 0.036010 AGCGGCTCTGTTTGCTGTAT 60.036 50.000 0.00 0.00 38.90 2.29 F
1489 1573 0.251341 ACTTTGCTTACCTGCTGGGG 60.251 55.000 14.82 5.02 40.03 4.96 F
2670 4922 1.949525 AGTTTGAAGCAACATCAGCGT 59.050 42.857 0.00 0.00 37.01 5.07 F
3618 5895 0.032678 CAGACAGCCTGAAGTCACGT 59.967 55.000 0.00 0.00 45.78 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1554 0.251341 CCCCAGCAGGTAAGCAAAGT 60.251 55.0 0.00 0.00 36.85 2.66 R
1495 1579 1.843368 ATAACAGCTGCTGGCATTGT 58.157 45.0 31.00 13.65 44.79 2.71 R
3075 5341 0.162507 CTTTCAGTTGTCGCAGCTCG 59.837 55.0 0.00 0.00 40.15 5.03 R
3630 5907 0.401979 ATCCCGAATCCACCTCCCAT 60.402 55.0 0.00 0.00 0.00 4.00 R
5115 7987 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.0 13.64 0.00 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.125147 TGCCTCCAATTCGCCTCG 60.125 61.111 0.00 0.00 0.00 4.63
50 51 1.225373 CCTCCCATTCCCCTTCATCA 58.775 55.000 0.00 0.00 0.00 3.07
51 52 1.785208 CCTCCCATTCCCCTTCATCAT 59.215 52.381 0.00 0.00 0.00 2.45
67 68 1.589993 CATCACACCGGCTCTAGCG 60.590 63.158 0.00 0.00 43.26 4.26
83 84 3.624300 CGATCGCTCGCTGCCTTG 61.624 66.667 0.26 0.00 38.20 3.61
89 90 2.467826 GCTCGCTGCCTTGGTCATC 61.468 63.158 0.00 0.00 35.15 2.92
95 96 1.001764 TGCCTTGGTCATCCTGCAG 60.002 57.895 6.78 6.78 32.76 4.41
99 100 0.035725 CTTGGTCATCCTGCAGCTCA 60.036 55.000 8.66 0.00 34.23 4.26
109 110 1.300481 CTGCAGCTCATCATCTGTGG 58.700 55.000 0.00 0.00 33.09 4.17
118 119 0.829333 ATCATCTGTGGAAGCTCGCT 59.171 50.000 0.00 0.00 0.00 4.93
125 126 2.360475 GGAAGCTCGCTGCCCTTT 60.360 61.111 4.45 0.00 44.23 3.11
134 135 1.336755 TCGCTGCCCTTTGTTTTCTTC 59.663 47.619 0.00 0.00 0.00 2.87
135 136 1.602920 CGCTGCCCTTTGTTTTCTTCC 60.603 52.381 0.00 0.00 0.00 3.46
150 151 6.126710 TGTTTTCTTCCTTGTCCCTGTTAGTA 60.127 38.462 0.00 0.00 0.00 1.82
258 260 5.884792 CAGCTCTCTGATTTATTTCCCTGTT 59.115 40.000 0.00 0.00 42.95 3.16
314 354 4.471386 TCAAAAACCTTTGATTTCACCCCA 59.529 37.500 0.00 0.00 44.76 4.96
326 366 1.125093 TCACCCCATCGGTCTTGTGT 61.125 55.000 0.00 0.00 43.58 3.72
335 375 0.817634 CGGTCTTGTGTTGCCTCCAA 60.818 55.000 0.00 0.00 0.00 3.53
348 388 1.227380 CTCCAATTCGCCTCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
349 389 2.897350 CCAATTCGCCTCTCCCGC 60.897 66.667 0.00 0.00 0.00 6.13
350 390 2.125147 CAATTCGCCTCTCCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
351 391 1.745115 CAATTCGCCTCTCCCGCAA 60.745 57.895 0.00 0.00 0.00 4.85
352 392 1.097547 CAATTCGCCTCTCCCGCAAT 61.098 55.000 0.00 0.00 0.00 3.56
353 393 0.394352 AATTCGCCTCTCCCGCAATT 60.394 50.000 0.00 0.00 0.00 2.32
354 394 0.394352 ATTCGCCTCTCCCGCAATTT 60.394 50.000 0.00 0.00 0.00 1.82
355 395 1.024579 TTCGCCTCTCCCGCAATTTC 61.025 55.000 0.00 0.00 0.00 2.17
356 396 1.450312 CGCCTCTCCCGCAATTTCT 60.450 57.895 0.00 0.00 0.00 2.52
357 397 1.432270 CGCCTCTCCCGCAATTTCTC 61.432 60.000 0.00 0.00 0.00 2.87
358 398 0.392998 GCCTCTCCCGCAATTTCTCA 60.393 55.000 0.00 0.00 0.00 3.27
359 399 1.748591 GCCTCTCCCGCAATTTCTCAT 60.749 52.381 0.00 0.00 0.00 2.90
360 400 2.648059 CCTCTCCCGCAATTTCTCATT 58.352 47.619 0.00 0.00 0.00 2.57
361 401 2.615912 CCTCTCCCGCAATTTCTCATTC 59.384 50.000 0.00 0.00 0.00 2.67
362 402 2.615912 CTCTCCCGCAATTTCTCATTCC 59.384 50.000 0.00 0.00 0.00 3.01
363 403 1.678101 CTCCCGCAATTTCTCATTCCC 59.322 52.381 0.00 0.00 0.00 3.97
364 404 0.746659 CCCGCAATTTCTCATTCCCC 59.253 55.000 0.00 0.00 0.00 4.81
365 405 1.686115 CCCGCAATTTCTCATTCCCCT 60.686 52.381 0.00 0.00 0.00 4.79
366 406 2.102578 CCGCAATTTCTCATTCCCCTT 58.897 47.619 0.00 0.00 0.00 3.95
367 407 2.099756 CCGCAATTTCTCATTCCCCTTC 59.900 50.000 0.00 0.00 0.00 3.46
368 408 2.754552 CGCAATTTCTCATTCCCCTTCA 59.245 45.455 0.00 0.00 0.00 3.02
369 409 3.382546 CGCAATTTCTCATTCCCCTTCAT 59.617 43.478 0.00 0.00 0.00 2.57
370 410 4.498682 CGCAATTTCTCATTCCCCTTCATC 60.499 45.833 0.00 0.00 0.00 2.92
371 411 4.403432 GCAATTTCTCATTCCCCTTCATCA 59.597 41.667 0.00 0.00 0.00 3.07
372 412 5.680665 GCAATTTCTCATTCCCCTTCATCAC 60.681 44.000 0.00 0.00 0.00 3.06
373 413 3.652057 TTCTCATTCCCCTTCATCACC 57.348 47.619 0.00 0.00 0.00 4.02
374 414 1.486310 TCTCATTCCCCTTCATCACCG 59.514 52.381 0.00 0.00 0.00 4.94
375 415 0.107214 TCATTCCCCTTCATCACCGC 60.107 55.000 0.00 0.00 0.00 5.68
376 416 0.394216 CATTCCCCTTCATCACCGCA 60.394 55.000 0.00 0.00 0.00 5.69
377 417 0.394352 ATTCCCCTTCATCACCGCAC 60.394 55.000 0.00 0.00 0.00 5.34
378 418 2.438434 CCCCTTCATCACCGCACC 60.438 66.667 0.00 0.00 0.00 5.01
379 419 2.671070 CCCTTCATCACCGCACCT 59.329 61.111 0.00 0.00 0.00 4.00
380 420 1.746615 CCCTTCATCACCGCACCTG 60.747 63.158 0.00 0.00 0.00 4.00
381 421 2.401766 CCTTCATCACCGCACCTGC 61.402 63.158 0.00 0.00 37.78 4.85
382 422 1.376424 CTTCATCACCGCACCTGCT 60.376 57.895 0.00 0.00 39.32 4.24
383 423 1.364626 CTTCATCACCGCACCTGCTC 61.365 60.000 0.00 0.00 39.32 4.26
384 424 2.803155 TTCATCACCGCACCTGCTCC 62.803 60.000 0.00 0.00 39.32 4.70
385 425 3.005539 ATCACCGCACCTGCTCCT 61.006 61.111 0.00 0.00 39.32 3.69
386 426 3.320879 ATCACCGCACCTGCTCCTG 62.321 63.158 0.00 0.00 39.32 3.86
400 440 1.777101 CTCCTGCAATCGCTAGCTAC 58.223 55.000 13.93 0.00 39.64 3.58
409 449 3.932545 ATCGCTAGCTACCTTCATCAG 57.067 47.619 13.93 0.00 0.00 2.90
410 450 1.338337 TCGCTAGCTACCTTCATCAGC 59.662 52.381 13.93 0.00 35.49 4.26
414 454 2.998316 AGCTACCTTCATCAGCCTTC 57.002 50.000 0.00 0.00 35.88 3.46
426 466 1.704628 TCAGCCTTCACCCTTCATCAA 59.295 47.619 0.00 0.00 0.00 2.57
427 467 1.815003 CAGCCTTCACCCTTCATCAAC 59.185 52.381 0.00 0.00 0.00 3.18
481 524 2.481952 CACTGTTAGTCTTGCTCTTGCC 59.518 50.000 0.00 0.00 38.71 4.52
491 534 1.967319 TGCTCTTGCCGTTTTCTTCT 58.033 45.000 0.00 0.00 38.71 2.85
499 542 7.214467 TCTTGCCGTTTTCTTCTTCAAATAT 57.786 32.000 0.00 0.00 0.00 1.28
500 543 8.330466 TCTTGCCGTTTTCTTCTTCAAATATA 57.670 30.769 0.00 0.00 0.00 0.86
501 544 8.234546 TCTTGCCGTTTTCTTCTTCAAATATAC 58.765 33.333 0.00 0.00 0.00 1.47
533 576 4.233005 GCACAAAAGCAGGAAGAAGAATC 58.767 43.478 0.00 0.00 0.00 2.52
558 601 2.111878 AGCGGCTCTGTTTGCTGT 59.888 55.556 0.00 0.00 38.90 4.40
560 603 0.036010 AGCGGCTCTGTTTGCTGTAT 60.036 50.000 0.00 0.00 38.90 2.29
585 628 7.004086 TGTTCACTGATTTATCTCCCTGTTTT 58.996 34.615 0.00 0.00 0.00 2.43
649 692 4.225942 TGATTTACACTCCAGAAGCCATCT 59.774 41.667 0.00 0.00 39.68 2.90
650 693 4.640771 TTTACACTCCAGAAGCCATCTT 57.359 40.909 0.00 0.00 35.73 2.40
651 694 4.640771 TTACACTCCAGAAGCCATCTTT 57.359 40.909 0.00 0.00 35.73 2.52
652 695 3.515602 ACACTCCAGAAGCCATCTTTT 57.484 42.857 0.00 0.00 35.73 2.27
653 696 3.837355 ACACTCCAGAAGCCATCTTTTT 58.163 40.909 0.00 0.00 35.73 1.94
654 697 3.823304 ACACTCCAGAAGCCATCTTTTTC 59.177 43.478 0.00 0.00 35.73 2.29
655 698 4.077822 CACTCCAGAAGCCATCTTTTTCT 58.922 43.478 0.00 0.00 35.73 2.52
656 699 4.522022 CACTCCAGAAGCCATCTTTTTCTT 59.478 41.667 0.00 0.00 35.73 2.52
657 700 5.010415 CACTCCAGAAGCCATCTTTTTCTTT 59.990 40.000 0.00 0.00 35.73 2.52
658 701 5.600069 ACTCCAGAAGCCATCTTTTTCTTTT 59.400 36.000 0.00 0.00 35.73 2.27
659 702 6.098838 ACTCCAGAAGCCATCTTTTTCTTTTT 59.901 34.615 0.00 0.00 35.73 1.94
685 728 9.823647 TTGAGGAATCTTTAGAGTTAGCTATTG 57.176 33.333 0.00 0.00 0.00 1.90
687 730 9.825109 GAGGAATCTTTAGAGTTAGCTATTGTT 57.175 33.333 0.00 0.00 0.00 2.83
697 740 7.259161 AGAGTTAGCTATTGTTTACTTCTCCG 58.741 38.462 0.00 0.00 0.00 4.63
699 742 8.059798 AGTTAGCTATTGTTTACTTCTCCGTA 57.940 34.615 0.00 0.00 0.00 4.02
702 745 7.772332 AGCTATTGTTTACTTCTCCGTATTG 57.228 36.000 0.00 0.00 0.00 1.90
704 747 7.491696 AGCTATTGTTTACTTCTCCGTATTGAC 59.508 37.037 0.00 0.00 0.00 3.18
707 750 4.529377 TGTTTACTTCTCCGTATTGACCCT 59.471 41.667 0.00 0.00 0.00 4.34
708 751 5.716228 TGTTTACTTCTCCGTATTGACCCTA 59.284 40.000 0.00 0.00 0.00 3.53
709 752 5.841957 TTACTTCTCCGTATTGACCCTAC 57.158 43.478 0.00 0.00 0.00 3.18
710 753 2.686915 ACTTCTCCGTATTGACCCTACG 59.313 50.000 0.00 0.00 41.17 3.51
723 766 3.256631 TGACCCTACGGTTTAGTGTCTTC 59.743 47.826 0.00 0.00 44.88 2.87
730 773 3.181448 ACGGTTTAGTGTCTTCACCCATT 60.181 43.478 0.00 0.00 44.83 3.16
808 860 1.488393 CCACCAACCACCAACCAAATT 59.512 47.619 0.00 0.00 0.00 1.82
849 901 3.023119 ACACAAACACAATCTGCCTTCA 58.977 40.909 0.00 0.00 0.00 3.02
893 945 6.094048 CCCATATTTGCTCTGTTATATTCCCG 59.906 42.308 0.00 0.00 0.00 5.14
932 996 1.182385 TCCCAATTTTCCCACCGTGC 61.182 55.000 0.00 0.00 0.00 5.34
954 1027 4.578928 GCCTTTCTACTTCCAAGAAACACA 59.421 41.667 0.00 0.00 37.89 3.72
955 1028 5.505819 GCCTTTCTACTTCCAAGAAACACAC 60.506 44.000 0.00 0.00 37.89 3.82
999 1080 1.876799 CAATACCACGGTGTGCTTTCA 59.123 47.619 7.45 0.00 31.34 2.69
1077 1158 2.964740 TCACCGATCTTGAAGAAGCTG 58.035 47.619 0.00 0.00 0.00 4.24
1236 1317 1.962822 CCAGCAGCTCAAAGACGCA 60.963 57.895 0.00 0.00 0.00 5.24
1335 1419 8.749026 ATTCTTTGATAGAACATGCATCTTCT 57.251 30.769 19.32 19.32 45.33 2.85
1470 1554 1.550130 CCAAGGGCCTCCGTGAACTA 61.550 60.000 6.46 0.00 43.82 2.24
1489 1573 0.251341 ACTTTGCTTACCTGCTGGGG 60.251 55.000 14.82 5.02 40.03 4.96
1495 1579 3.881926 TTACCTGCTGGGGCCTCCA 62.882 63.158 14.82 6.46 44.79 3.86
1598 1694 9.381038 TGATATTATAGGTCTTCTTACCAAGCT 57.619 33.333 0.00 0.00 42.40 3.74
1856 4082 5.376625 TCTCCAATGCATATTAAGGGACAC 58.623 41.667 0.00 0.00 0.00 3.67
1857 4083 4.469657 TCCAATGCATATTAAGGGACACC 58.530 43.478 0.00 0.00 0.00 4.16
2301 4542 5.924475 CACTTTTGTGGAGTTACGAGAAT 57.076 39.130 0.00 0.00 46.16 2.40
2669 4921 2.225019 AGAGTTTGAAGCAACATCAGCG 59.775 45.455 0.00 0.00 37.01 5.18
2670 4922 1.949525 AGTTTGAAGCAACATCAGCGT 59.050 42.857 0.00 0.00 37.01 5.07
2672 4924 3.115554 GTTTGAAGCAACATCAGCGTTT 58.884 40.909 0.00 0.00 37.01 3.60
2710 4962 3.998341 TCATTTACGTACCTTTGTCTGCC 59.002 43.478 0.00 0.00 0.00 4.85
2715 4967 2.069273 CGTACCTTTGTCTGCCTTGAG 58.931 52.381 0.00 0.00 0.00 3.02
2792 5046 4.530710 AGTTGCGTGTACTTATTCTGGA 57.469 40.909 0.00 0.00 0.00 3.86
2861 5115 2.036862 ACCTTCGGTACTTGAACCTCAC 59.963 50.000 0.00 0.00 37.39 3.51
2878 5132 4.103153 ACCTCACAAGAACTTCAATCTCCA 59.897 41.667 0.00 0.00 0.00 3.86
2918 5172 4.215399 GTGTGCTCTTTACCACTTGCAATA 59.785 41.667 0.00 0.00 33.26 1.90
3045 5311 7.106239 AGTTAATTTCACTCCACAATCTCGAT 58.894 34.615 0.00 0.00 0.00 3.59
3127 5393 3.214328 CTTGGTGGCAGTTTAAGTGTCT 58.786 45.455 5.95 0.00 0.00 3.41
3162 5428 0.700564 TTGCTGGGAAGGATCAAGCT 59.299 50.000 0.00 0.00 37.56 3.74
3475 5752 4.104086 TCACCTCAAGAATGTCCCATACT 58.896 43.478 0.00 0.00 0.00 2.12
3523 5800 6.381420 AGCTAGCCTTGAAGAGTTAGTGATTA 59.619 38.462 12.13 0.00 0.00 1.75
3528 5805 7.821846 AGCCTTGAAGAGTTAGTGATTAAGAAG 59.178 37.037 0.00 0.00 0.00 2.85
3577 5854 5.133264 GCGATGAGCTAAAACAATATGACG 58.867 41.667 0.00 0.00 44.04 4.35
3605 5882 3.931468 GAGAACACCATGATGACAGACAG 59.069 47.826 0.00 0.00 0.00 3.51
3618 5895 0.032678 CAGACAGCCTGAAGTCACGT 59.967 55.000 0.00 0.00 45.78 4.49
3630 5907 3.118920 TGAAGTCACGTCTTTCTTCCACA 60.119 43.478 12.63 0.00 36.47 4.17
3654 5931 2.289565 GAGGTGGATTCGGGATCAAAC 58.710 52.381 0.00 0.00 36.43 2.93
3663 5940 2.985896 TCGGGATCAAACATCAAGGAC 58.014 47.619 0.00 0.00 0.00 3.85
3913 6200 5.605564 TCACCTTTATTCATGTGTCGTTG 57.394 39.130 0.00 0.00 0.00 4.10
4041 6330 5.342433 CAACAGTTGACAAAGCTTGATGAA 58.658 37.500 7.61 0.00 0.00 2.57
4109 6401 2.508526 AGCTGTTTCCGCTCTTTCAAT 58.491 42.857 0.00 0.00 30.49 2.57
4151 6443 4.021104 CCCTTCTGTAGAGTTGACACATGA 60.021 45.833 0.00 0.00 0.00 3.07
4449 6742 0.622136 TGCGAGTCCAGGAGTACCTA 59.378 55.000 0.00 0.00 45.94 3.08
4451 6744 2.308690 GCGAGTCCAGGAGTACCTATT 58.691 52.381 0.00 0.00 45.94 1.73
4490 6789 1.610102 GCTCAACCACATGCTCTCTGT 60.610 52.381 0.00 0.00 0.00 3.41
4498 6797 3.306989 CCACATGCTCTCTGTTGAAGGTA 60.307 47.826 0.00 0.00 0.00 3.08
4505 6804 5.643777 TGCTCTCTGTTGAAGGTATTAAAGC 59.356 40.000 0.00 0.00 0.00 3.51
4519 6818 8.171164 AGGTATTAAAGCTCCAAGATATTTGC 57.829 34.615 0.00 0.00 0.00 3.68
4562 6864 5.066593 GTCCTTTTCATTTGAGGAGTCAGT 58.933 41.667 0.00 0.00 40.10 3.41
4648 6957 3.152341 CTGAAGTCCTTTTCATGCCTGT 58.848 45.455 0.00 0.00 36.55 4.00
4663 6972 1.424493 CCTGTCGGAGCTGCGAATTC 61.424 60.000 32.29 19.91 0.00 2.17
4708 7017 1.755179 ACCTGATTTGCCATCTTCCG 58.245 50.000 0.00 0.00 0.00 4.30
4798 7209 4.142790 CTGGCCAAAGATTGAGCATATCT 58.857 43.478 7.01 0.00 33.87 1.98
5041 7913 3.635591 TCTCAGGCTCTCATCATGTGTA 58.364 45.455 0.00 0.00 0.00 2.90
5086 7958 2.114056 CATCGCCGATTTCTGCAATTG 58.886 47.619 0.00 0.00 0.00 2.32
5124 7996 6.342338 ACATAAATATGTACTCCCTCCGTC 57.658 41.667 4.28 0.00 44.54 4.79
5125 7997 5.245526 ACATAAATATGTACTCCCTCCGTCC 59.754 44.000 4.28 0.00 44.54 4.79
5126 7998 1.906990 ATATGTACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
5127 7999 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
5128 8000 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
5129 8001 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5130 8002 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
5131 8003 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
5132 8004 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
5133 8005 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
5134 8006 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
5135 8007 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
5136 8008 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5137 8009 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5138 8010 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5139 8011 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5140 8012 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
5141 8013 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
5142 8014 2.277084 GTCCGGAATTACTTGTCGCAT 58.723 47.619 5.23 0.00 0.00 4.73
5143 8015 3.450578 GTCCGGAATTACTTGTCGCATA 58.549 45.455 5.23 0.00 0.00 3.14
5144 8016 3.866910 GTCCGGAATTACTTGTCGCATAA 59.133 43.478 5.23 0.00 0.00 1.90
5145 8017 4.330620 GTCCGGAATTACTTGTCGCATAAA 59.669 41.667 5.23 0.00 0.00 1.40
5146 8018 5.007332 GTCCGGAATTACTTGTCGCATAAAT 59.993 40.000 5.23 0.00 0.00 1.40
5147 8019 5.007234 TCCGGAATTACTTGTCGCATAAATG 59.993 40.000 0.00 0.00 0.00 2.32
5148 8020 5.220777 CCGGAATTACTTGTCGCATAAATGT 60.221 40.000 0.00 0.00 0.00 2.71
5149 8021 6.018588 CCGGAATTACTTGTCGCATAAATGTA 60.019 38.462 0.00 0.00 0.00 2.29
5150 8022 7.307751 CCGGAATTACTTGTCGCATAAATGTAT 60.308 37.037 0.00 0.00 0.00 2.29
5151 8023 8.705134 CGGAATTACTTGTCGCATAAATGTATA 58.295 33.333 0.00 0.00 0.00 1.47
5158 8030 9.515020 ACTTGTCGCATAAATGTATAAAAATGG 57.485 29.630 0.00 0.00 0.00 3.16
5159 8031 9.729023 CTTGTCGCATAAATGTATAAAAATGGA 57.271 29.630 0.00 0.00 0.00 3.41
5161 8033 9.676195 TGTCGCATAAATGTATAAAAATGGATG 57.324 29.630 0.00 0.00 0.00 3.51
5162 8034 8.638565 GTCGCATAAATGTATAAAAATGGATGC 58.361 33.333 0.00 0.00 34.13 3.91
5163 8035 8.355913 TCGCATAAATGTATAAAAATGGATGCA 58.644 29.630 0.00 0.00 36.59 3.96
5164 8036 9.142515 CGCATAAATGTATAAAAATGGATGCAT 57.857 29.630 0.00 0.00 36.59 3.96
5204 8076 9.170890 ACATCTAGATACATTCCCTTTTATCCA 57.829 33.333 4.54 0.00 0.00 3.41
5210 8082 9.713684 AGATACATTCCCTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
5213 8085 8.378115 ACATTCCCTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 0.00 2.92
5214 8086 8.260114 ACATTCCCTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 0.00 3.06
5215 8087 7.789202 TTCCCTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
5216 8088 7.789202 TCCCTTTTATCCATTTTGATGACAA 57.211 32.000 0.00 0.00 0.00 3.18
5217 8089 8.378115 TCCCTTTTATCCATTTTGATGACAAT 57.622 30.769 0.00 0.00 35.85 2.71
5218 8090 8.824783 TCCCTTTTATCCATTTTGATGACAATT 58.175 29.630 0.00 0.00 35.85 2.32
5225 8097 8.876275 ATCCATTTTGATGACAATTATTTCCG 57.124 30.769 0.00 0.00 35.85 4.30
5226 8098 7.264221 TCCATTTTGATGACAATTATTTCCGG 58.736 34.615 0.00 0.00 35.85 5.14
5227 8099 7.123397 TCCATTTTGATGACAATTATTTCCGGA 59.877 33.333 0.00 0.00 35.85 5.14
5228 8100 7.222611 CCATTTTGATGACAATTATTTCCGGAC 59.777 37.037 1.83 0.00 35.85 4.79
5229 8101 5.478233 TTGATGACAATTATTTCCGGACG 57.522 39.130 1.83 0.00 0.00 4.79
5230 8102 3.874543 TGATGACAATTATTTCCGGACGG 59.125 43.478 1.83 3.96 0.00 4.79
5231 8103 3.613494 TGACAATTATTTCCGGACGGA 57.387 42.857 1.83 9.76 43.52 4.69
5232 8104 3.527533 TGACAATTATTTCCGGACGGAG 58.472 45.455 13.64 3.15 46.06 4.63
5233 8105 2.870411 GACAATTATTTCCGGACGGAGG 59.130 50.000 13.64 0.00 46.06 4.30
5234 8106 2.218603 CAATTATTTCCGGACGGAGGG 58.781 52.381 13.64 0.00 46.06 4.30
5235 8107 1.797320 ATTATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
5236 8108 1.117150 TTATTTCCGGACGGAGGGAG 58.883 55.000 13.64 0.00 46.06 4.30
5237 8109 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5238 8110 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5280 8152 5.300792 GGTTGTTTTGTTATCCTTGGAGTGA 59.699 40.000 0.00 0.00 0.00 3.41
5291 8163 2.958355 CCTTGGAGTGACACATTTGGTT 59.042 45.455 8.59 0.00 0.00 3.67
5360 8232 6.133356 TGAACTTGGGTAGTTTCTTTTGGAT 58.867 36.000 0.00 0.00 47.00 3.41
5588 8463 3.904800 TCACAGAACAGTTCAGGTTCA 57.095 42.857 15.85 0.36 45.45 3.18
5674 8552 7.381678 GCAAATAAGTATAGTACGTAGCTGCTT 59.618 37.037 7.79 1.82 34.48 3.91
5721 8599 9.838339 ATTGCTATAATCCAATAGGCTATACAC 57.162 33.333 7.59 0.00 30.39 2.90
5722 8600 8.609617 TGCTATAATCCAATAGGCTATACACT 57.390 34.615 7.59 0.00 31.28 3.55
5723 8601 9.709387 TGCTATAATCCAATAGGCTATACACTA 57.291 33.333 7.59 0.00 31.28 2.74
5742 8620 9.884814 ATACACTATTTATGTCTCTTACTCCCT 57.115 33.333 0.00 0.00 0.00 4.20
5743 8621 8.240267 ACACTATTTATGTCTCTTACTCCCTC 57.760 38.462 0.00 0.00 0.00 4.30
5744 8622 7.288158 ACACTATTTATGTCTCTTACTCCCTCC 59.712 40.741 0.00 0.00 0.00 4.30
5745 8623 5.793030 ATTTATGTCTCTTACTCCCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
5746 8624 4.515028 TTATGTCTCTTACTCCCTCCGA 57.485 45.455 0.00 0.00 0.00 4.55
5747 8625 3.603965 ATGTCTCTTACTCCCTCCGAT 57.396 47.619 0.00 0.00 0.00 4.18
5748 8626 2.933573 TGTCTCTTACTCCCTCCGATC 58.066 52.381 0.00 0.00 0.00 3.69
5749 8627 2.232399 GTCTCTTACTCCCTCCGATCC 58.768 57.143 0.00 0.00 0.00 3.36
5750 8628 1.850998 TCTCTTACTCCCTCCGATCCA 59.149 52.381 0.00 0.00 0.00 3.41
5751 8629 2.243994 TCTCTTACTCCCTCCGATCCAA 59.756 50.000 0.00 0.00 0.00 3.53
5752 8630 3.031736 CTCTTACTCCCTCCGATCCAAA 58.968 50.000 0.00 0.00 0.00 3.28
5753 8631 3.446968 TCTTACTCCCTCCGATCCAAAA 58.553 45.455 0.00 0.00 0.00 2.44
5754 8632 4.037927 TCTTACTCCCTCCGATCCAAAAT 58.962 43.478 0.00 0.00 0.00 1.82
5755 8633 5.213519 TCTTACTCCCTCCGATCCAAAATA 58.786 41.667 0.00 0.00 0.00 1.40
5756 8634 5.664006 TCTTACTCCCTCCGATCCAAAATAA 59.336 40.000 0.00 0.00 0.00 1.40
5757 8635 4.423625 ACTCCCTCCGATCCAAAATAAG 57.576 45.455 0.00 0.00 0.00 1.73
5758 8636 3.142174 CTCCCTCCGATCCAAAATAAGC 58.858 50.000 0.00 0.00 0.00 3.09
5759 8637 1.873591 CCCTCCGATCCAAAATAAGCG 59.126 52.381 0.00 0.00 0.00 4.68
5760 8638 2.561569 CCTCCGATCCAAAATAAGCGT 58.438 47.619 0.00 0.00 0.00 5.07
5761 8639 2.943033 CCTCCGATCCAAAATAAGCGTT 59.057 45.455 0.00 0.00 0.00 4.84
5762 8640 4.124238 CCTCCGATCCAAAATAAGCGTTA 58.876 43.478 0.00 0.00 0.00 3.18
5763 8641 4.573201 CCTCCGATCCAAAATAAGCGTTAA 59.427 41.667 0.00 0.00 0.00 2.01
5764 8642 5.473796 TCCGATCCAAAATAAGCGTTAAC 57.526 39.130 0.00 0.00 0.00 2.01
5765 8643 4.333372 TCCGATCCAAAATAAGCGTTAACC 59.667 41.667 0.00 0.00 0.00 2.85
5766 8644 4.334481 CCGATCCAAAATAAGCGTTAACCT 59.666 41.667 0.00 0.00 0.00 3.50
5767 8645 5.163693 CCGATCCAAAATAAGCGTTAACCTT 60.164 40.000 12.17 12.17 0.00 3.50
5768 8646 6.037391 CCGATCCAAAATAAGCGTTAACCTTA 59.963 38.462 14.81 14.81 0.00 2.69
5769 8647 7.123830 CGATCCAAAATAAGCGTTAACCTTAG 58.876 38.462 16.52 7.59 0.00 2.18
5770 8648 7.201582 CGATCCAAAATAAGCGTTAACCTTAGT 60.202 37.037 16.52 13.18 0.00 2.24
5771 8649 7.748691 TCCAAAATAAGCGTTAACCTTAGTT 57.251 32.000 16.76 16.76 35.38 2.24
5772 8650 7.809665 TCCAAAATAAGCGTTAACCTTAGTTC 58.190 34.615 20.01 0.00 33.51 3.01
5773 8651 6.739550 CCAAAATAAGCGTTAACCTTAGTTCG 59.260 38.462 20.01 13.90 33.51 3.95
5774 8652 7.360269 CCAAAATAAGCGTTAACCTTAGTTCGA 60.360 37.037 20.01 0.00 33.51 3.71
5775 8653 7.656707 AAATAAGCGTTAACCTTAGTTCGAA 57.343 32.000 16.76 0.00 37.42 3.71
5776 8654 7.656707 AATAAGCGTTAACCTTAGTTCGAAA 57.343 32.000 16.52 0.00 37.42 3.46
5777 8655 4.979564 AGCGTTAACCTTAGTTCGAAAC 57.020 40.909 0.00 0.00 37.42 2.78
5778 8656 4.625028 AGCGTTAACCTTAGTTCGAAACT 58.375 39.130 0.00 2.34 45.40 2.66
5779 8657 4.446719 AGCGTTAACCTTAGTTCGAAACTG 59.553 41.667 0.00 0.00 42.84 3.16
5780 8658 4.209911 GCGTTAACCTTAGTTCGAAACTGT 59.790 41.667 0.00 0.00 42.84 3.55
5781 8659 5.663292 CGTTAACCTTAGTTCGAAACTGTG 58.337 41.667 0.00 0.00 42.84 3.66
5782 8660 5.459762 CGTTAACCTTAGTTCGAAACTGTGA 59.540 40.000 0.00 0.00 42.84 3.58
5783 8661 6.560983 CGTTAACCTTAGTTCGAAACTGTGAC 60.561 42.308 0.00 0.00 42.84 3.67
5784 8662 4.395959 ACCTTAGTTCGAAACTGTGACA 57.604 40.909 0.00 0.00 42.84 3.58
5785 8663 4.117685 ACCTTAGTTCGAAACTGTGACAC 58.882 43.478 0.00 0.00 42.84 3.67
5786 8664 4.142004 ACCTTAGTTCGAAACTGTGACACT 60.142 41.667 7.20 0.00 42.84 3.55
5787 8665 4.809426 CCTTAGTTCGAAACTGTGACACTT 59.191 41.667 7.20 0.00 42.84 3.16
5788 8666 5.981315 CCTTAGTTCGAAACTGTGACACTTA 59.019 40.000 7.20 0.00 42.84 2.24
5789 8667 6.645415 CCTTAGTTCGAAACTGTGACACTTAT 59.355 38.462 7.20 0.00 42.84 1.73
5790 8668 7.170998 CCTTAGTTCGAAACTGTGACACTTATT 59.829 37.037 7.20 0.00 42.84 1.40
5791 8669 6.287107 AGTTCGAAACTGTGACACTTATTG 57.713 37.500 7.20 0.00 41.01 1.90
5792 8670 5.815740 AGTTCGAAACTGTGACACTTATTGT 59.184 36.000 7.20 0.00 41.01 2.71
5793 8671 6.238103 AGTTCGAAACTGTGACACTTATTGTG 60.238 38.462 7.20 0.00 45.41 3.33
5794 8672 9.054969 AGTTCGAAACTGTGACACTTATTGTGG 62.055 40.741 7.20 0.00 44.77 4.17
5803 8681 2.838736 CACTTATTGTGGATCGGAGGG 58.161 52.381 0.00 0.00 42.68 4.30
5804 8682 2.434336 CACTTATTGTGGATCGGAGGGA 59.566 50.000 0.00 0.00 42.68 4.20
5805 8683 2.700897 ACTTATTGTGGATCGGAGGGAG 59.299 50.000 0.00 0.00 0.00 4.30
5806 8684 1.048601 TATTGTGGATCGGAGGGAGC 58.951 55.000 0.00 0.00 0.00 4.70
5807 8685 0.982852 ATTGTGGATCGGAGGGAGCA 60.983 55.000 0.00 0.00 30.89 4.26
5808 8686 1.617018 TTGTGGATCGGAGGGAGCAG 61.617 60.000 0.00 0.00 30.89 4.24
5809 8687 2.060980 GTGGATCGGAGGGAGCAGT 61.061 63.158 0.00 0.00 30.89 4.40
5810 8688 0.755698 GTGGATCGGAGGGAGCAGTA 60.756 60.000 0.00 0.00 30.89 2.74
5811 8689 0.188587 TGGATCGGAGGGAGCAGTAT 59.811 55.000 0.00 0.00 30.89 2.12
5812 8690 1.343069 GGATCGGAGGGAGCAGTATT 58.657 55.000 0.00 0.00 30.89 1.89
5813 8691 1.694696 GGATCGGAGGGAGCAGTATTT 59.305 52.381 0.00 0.00 30.89 1.40
5814 8692 2.104963 GGATCGGAGGGAGCAGTATTTT 59.895 50.000 0.00 0.00 30.89 1.82
5815 8693 3.433740 GGATCGGAGGGAGCAGTATTTTT 60.434 47.826 0.00 0.00 30.89 1.94
5816 8694 3.261981 TCGGAGGGAGCAGTATTTTTC 57.738 47.619 0.00 0.00 0.00 2.29
5817 8695 2.838202 TCGGAGGGAGCAGTATTTTTCT 59.162 45.455 0.00 0.00 0.00 2.52
5818 8696 3.263425 TCGGAGGGAGCAGTATTTTTCTT 59.737 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.140814 GAATGGGAGGTTGCGGGC 61.141 66.667 0.00 0.00 0.00 6.13
30 31 1.226311 GATGAAGGGGAATGGGAGGT 58.774 55.000 0.00 0.00 0.00 3.85
31 32 1.225373 TGATGAAGGGGAATGGGAGG 58.775 55.000 0.00 0.00 0.00 4.30
50 51 1.109920 ATCGCTAGAGCCGGTGTGAT 61.110 55.000 1.90 3.73 37.91 3.06
51 52 1.725557 GATCGCTAGAGCCGGTGTGA 61.726 60.000 1.90 1.33 37.91 3.58
78 79 2.413142 GCTGCAGGATGACCAAGGC 61.413 63.158 17.12 0.00 39.69 4.35
83 84 0.179702 TGATGAGCTGCAGGATGACC 59.820 55.000 17.12 0.00 39.69 4.02
89 90 1.300481 CACAGATGATGAGCTGCAGG 58.700 55.000 17.12 0.00 39.36 4.85
95 96 2.211806 GAGCTTCCACAGATGATGAGC 58.788 52.381 0.00 0.00 0.00 4.26
99 100 0.829333 AGCGAGCTTCCACAGATGAT 59.171 50.000 0.00 0.00 0.00 2.45
109 110 1.518903 AACAAAGGGCAGCGAGCTTC 61.519 55.000 0.00 0.00 44.79 3.86
118 119 3.103742 ACAAGGAAGAAAACAAAGGGCA 58.896 40.909 0.00 0.00 0.00 5.36
125 126 3.662759 ACAGGGACAAGGAAGAAAACA 57.337 42.857 0.00 0.00 0.00 2.83
134 135 6.301169 AGAAGAATACTAACAGGGACAAGG 57.699 41.667 0.00 0.00 0.00 3.61
135 136 7.386851 TGAAGAAGAATACTAACAGGGACAAG 58.613 38.462 0.00 0.00 0.00 3.16
150 151 8.897752 GGCAAGTAGATGTATTTGAAGAAGAAT 58.102 33.333 9.01 0.00 29.39 2.40
258 260 5.923733 TGAAAAACCTGCAGGAGTAAAAA 57.076 34.783 39.19 15.31 38.94 1.94
310 312 1.586154 GCAACACAAGACCGATGGGG 61.586 60.000 0.00 0.00 43.62 4.96
314 354 0.321653 GGAGGCAACACAAGACCGAT 60.322 55.000 0.00 0.00 41.41 4.18
326 366 0.392998 GAGAGGCGAATTGGAGGCAA 60.393 55.000 0.00 0.00 35.18 4.52
335 375 0.394352 AAATTGCGGGAGAGGCGAAT 60.394 50.000 0.00 0.00 0.00 3.34
348 388 4.403432 TGATGAAGGGGAATGAGAAATTGC 59.597 41.667 0.00 0.00 0.00 3.56
349 389 5.163478 GGTGATGAAGGGGAATGAGAAATTG 60.163 44.000 0.00 0.00 0.00 2.32
350 390 4.958581 GGTGATGAAGGGGAATGAGAAATT 59.041 41.667 0.00 0.00 0.00 1.82
351 391 4.540715 GGTGATGAAGGGGAATGAGAAAT 58.459 43.478 0.00 0.00 0.00 2.17
352 392 3.622206 CGGTGATGAAGGGGAATGAGAAA 60.622 47.826 0.00 0.00 0.00 2.52
353 393 2.092968 CGGTGATGAAGGGGAATGAGAA 60.093 50.000 0.00 0.00 0.00 2.87
354 394 1.486310 CGGTGATGAAGGGGAATGAGA 59.514 52.381 0.00 0.00 0.00 3.27
355 395 1.959042 CGGTGATGAAGGGGAATGAG 58.041 55.000 0.00 0.00 0.00 2.90
356 396 0.107214 GCGGTGATGAAGGGGAATGA 60.107 55.000 0.00 0.00 0.00 2.57
357 397 0.394216 TGCGGTGATGAAGGGGAATG 60.394 55.000 0.00 0.00 0.00 2.67
358 398 0.394352 GTGCGGTGATGAAGGGGAAT 60.394 55.000 0.00 0.00 0.00 3.01
359 399 1.002624 GTGCGGTGATGAAGGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
360 400 2.668632 GTGCGGTGATGAAGGGGA 59.331 61.111 0.00 0.00 0.00 4.81
361 401 2.438434 GGTGCGGTGATGAAGGGG 60.438 66.667 0.00 0.00 0.00 4.79
362 402 1.746615 CAGGTGCGGTGATGAAGGG 60.747 63.158 0.00 0.00 0.00 3.95
363 403 2.401766 GCAGGTGCGGTGATGAAGG 61.402 63.158 0.00 0.00 0.00 3.46
364 404 3.181367 GCAGGTGCGGTGATGAAG 58.819 61.111 0.00 0.00 0.00 3.02
380 420 0.032678 TAGCTAGCGATTGCAGGAGC 59.967 55.000 10.16 15.28 46.23 4.70
381 421 1.604185 GGTAGCTAGCGATTGCAGGAG 60.604 57.143 10.16 2.50 46.23 3.69
382 422 0.389391 GGTAGCTAGCGATTGCAGGA 59.611 55.000 10.16 0.00 46.23 3.86
383 423 0.390860 AGGTAGCTAGCGATTGCAGG 59.609 55.000 16.82 0.10 46.23 4.85
384 424 2.131183 GAAGGTAGCTAGCGATTGCAG 58.869 52.381 16.82 3.98 46.23 4.41
385 425 1.480545 TGAAGGTAGCTAGCGATTGCA 59.519 47.619 16.82 9.16 46.23 4.08
386 426 2.225068 TGAAGGTAGCTAGCGATTGC 57.775 50.000 16.82 0.00 43.24 3.56
393 433 3.386078 TGAAGGCTGATGAAGGTAGCTAG 59.614 47.826 0.00 0.00 37.58 3.42
400 440 0.622665 AGGGTGAAGGCTGATGAAGG 59.377 55.000 0.00 0.00 0.00 3.46
409 449 0.804989 CGTTGATGAAGGGTGAAGGC 59.195 55.000 0.00 0.00 0.00 4.35
410 450 2.185004 ACGTTGATGAAGGGTGAAGG 57.815 50.000 0.00 0.00 0.00 3.46
414 454 2.673368 GAGCTTACGTTGATGAAGGGTG 59.327 50.000 0.00 0.00 0.00 4.61
426 466 1.067212 CGAAGGGCATAGAGCTTACGT 59.933 52.381 0.00 0.00 44.79 3.57
427 467 1.067212 ACGAAGGGCATAGAGCTTACG 59.933 52.381 0.00 0.00 44.79 3.18
499 542 6.712998 TCCTGCTTTTGTGCAAGTTAATAGTA 59.287 34.615 0.00 0.00 42.83 1.82
500 543 5.534654 TCCTGCTTTTGTGCAAGTTAATAGT 59.465 36.000 0.00 0.00 42.83 2.12
501 544 6.012658 TCCTGCTTTTGTGCAAGTTAATAG 57.987 37.500 0.00 0.00 42.83 1.73
558 601 7.437713 ACAGGGAGATAAATCAGTGAACATA 57.562 36.000 0.00 0.00 0.00 2.29
560 603 5.762179 ACAGGGAGATAAATCAGTGAACA 57.238 39.130 0.00 0.00 0.00 3.18
585 628 4.301505 GGAAACCTGCATGAGCGA 57.698 55.556 0.00 0.00 46.23 4.93
659 702 9.823647 CAATAGCTAACTCTAAAGATTCCTCAA 57.176 33.333 0.00 0.00 0.00 3.02
660 703 8.982723 ACAATAGCTAACTCTAAAGATTCCTCA 58.017 33.333 0.00 0.00 0.00 3.86
661 704 9.825109 AACAATAGCTAACTCTAAAGATTCCTC 57.175 33.333 0.00 0.00 0.00 3.71
671 714 8.404000 CGGAGAAGTAAACAATAGCTAACTCTA 58.596 37.037 0.00 0.00 0.00 2.43
672 715 7.093858 ACGGAGAAGTAAACAATAGCTAACTCT 60.094 37.037 0.00 0.00 0.00 3.24
673 716 7.034397 ACGGAGAAGTAAACAATAGCTAACTC 58.966 38.462 0.00 0.00 0.00 3.01
674 717 6.932947 ACGGAGAAGTAAACAATAGCTAACT 58.067 36.000 0.00 0.00 0.00 2.24
685 728 5.082251 AGGGTCAATACGGAGAAGTAAAC 57.918 43.478 0.00 0.00 0.00 2.01
687 730 4.336433 CGTAGGGTCAATACGGAGAAGTAA 59.664 45.833 0.00 0.00 41.71 2.24
699 742 9.823602 GTGAAGACACTAAACCGTAGGGTCAAT 62.824 44.444 16.03 6.26 46.41 2.57
702 745 4.853689 GTGAAGACACTAAACCGTAGGGTC 60.854 50.000 7.73 7.54 46.41 4.46
707 750 2.964464 TGGGTGAAGACACTAAACCGTA 59.036 45.455 0.00 0.00 45.32 4.02
708 751 1.764134 TGGGTGAAGACACTAAACCGT 59.236 47.619 0.00 0.00 45.32 4.83
709 752 2.536761 TGGGTGAAGACACTAAACCG 57.463 50.000 0.00 0.00 45.32 4.44
710 753 4.394729 TGAATGGGTGAAGACACTAAACC 58.605 43.478 0.00 0.00 45.32 3.27
711 754 6.431234 AGAATGAATGGGTGAAGACACTAAAC 59.569 38.462 0.00 0.00 45.32 2.01
723 766 3.688185 CACTGAGACAGAATGAATGGGTG 59.312 47.826 5.76 0.00 39.69 4.61
730 773 1.902508 GGGGACACTGAGACAGAATGA 59.097 52.381 5.76 0.00 39.69 2.57
779 822 1.351017 GGTGGTTGGTGGAGAAGATGA 59.649 52.381 0.00 0.00 0.00 2.92
932 996 5.588648 TGTGTGTTTCTTGGAAGTAGAAAGG 59.411 40.000 0.00 0.00 41.02 3.11
978 1051 2.147958 GAAAGCACACCGTGGTATTGA 58.852 47.619 3.03 0.00 43.73 2.57
983 1064 0.667993 CATTGAAAGCACACCGTGGT 59.332 50.000 3.03 0.00 46.58 4.16
999 1080 1.606885 CCAATGCCACTTCCGCCATT 61.607 55.000 0.00 0.00 0.00 3.16
1077 1158 2.512515 CTTGCGGGGTCAGCTAGC 60.513 66.667 6.62 6.62 31.63 3.42
1089 1170 1.648720 CACACCAAGACACCTTGCG 59.351 57.895 0.00 0.00 46.42 4.85
1236 1317 3.620966 GCAGGTCCTCAGCTTTACAGAAT 60.621 47.826 0.00 0.00 0.00 2.40
1335 1419 6.929049 GCACATGCTTCATAATAGTACCACTA 59.071 38.462 0.00 0.00 38.21 2.74
1435 1519 1.131883 CTTGGCTTTCGCAAGGATGAG 59.868 52.381 0.00 0.00 38.10 2.90
1436 1520 1.167851 CTTGGCTTTCGCAAGGATGA 58.832 50.000 0.00 0.00 38.10 2.92
1470 1554 0.251341 CCCCAGCAGGTAAGCAAAGT 60.251 55.000 0.00 0.00 36.85 2.66
1489 1573 2.677524 TGCTGGCATTGTGGAGGC 60.678 61.111 0.00 0.00 0.00 4.70
1495 1579 1.843368 ATAACAGCTGCTGGCATTGT 58.157 45.000 31.00 13.65 44.79 2.71
1598 1694 3.196254 TGTATCAGACTCAGCAGCAATCA 59.804 43.478 0.00 0.00 0.00 2.57
2301 4542 3.840666 ACCTCTGCAGACTTGGATCTAAA 59.159 43.478 23.41 0.00 0.00 1.85
2669 4921 3.273434 TGATGTAGCCTGCAGATCAAAC 58.727 45.455 17.39 9.39 0.00 2.93
2670 4922 3.632643 TGATGTAGCCTGCAGATCAAA 57.367 42.857 17.39 0.00 0.00 2.69
2672 4924 3.851458 AATGATGTAGCCTGCAGATCA 57.149 42.857 17.39 16.00 0.00 2.92
2710 4962 3.311871 GCATCATCTGTAACTGGCTCAAG 59.688 47.826 0.00 0.00 0.00 3.02
2715 4967 3.273434 TCTTGCATCATCTGTAACTGGC 58.727 45.455 0.00 0.00 0.00 4.85
2755 5009 3.423206 CGCAACTTCTTCAAATTCTGCAC 59.577 43.478 0.00 0.00 0.00 4.57
2792 5046 4.256920 CAGGTTGCTGCTGTTATAGAACT 58.743 43.478 0.00 0.00 36.45 3.01
2861 5115 5.636543 GGCAATTTGGAGATTGAAGTTCTTG 59.363 40.000 4.17 0.00 38.93 3.02
2878 5132 3.618019 GCACACAATGATCCTGGCAATTT 60.618 43.478 0.00 0.00 0.00 1.82
2918 5172 1.059913 CTGGGGACTGAACTGAAGGT 58.940 55.000 0.00 0.00 0.00 3.50
2983 5237 1.678970 GGCCACGCCCTTCAAGATT 60.679 57.895 0.00 0.00 44.06 2.40
3075 5341 0.162507 CTTTCAGTTGTCGCAGCTCG 59.837 55.000 0.00 0.00 40.15 5.03
3127 5393 4.219070 CCCAGCAACATTCTCAAGATTTGA 59.781 41.667 0.00 0.00 38.17 2.69
3162 5428 7.744087 TTTCTGATGTAGCTTTGCTTCTAAA 57.256 32.000 0.00 0.00 40.44 1.85
3475 5752 6.433847 TGGAAGAGAAGGTAATGTCTTCAA 57.566 37.500 13.85 2.67 46.24 2.69
3577 5854 3.691609 GTCATCATGGTGTTCTCCCTTTC 59.308 47.826 5.73 0.00 0.00 2.62
3605 5882 2.156343 AGAAAGACGTGACTTCAGGC 57.844 50.000 0.00 0.00 35.33 4.85
3618 5895 2.040278 CACCTCCCATGTGGAAGAAAGA 59.960 50.000 0.00 0.00 44.57 2.52
3630 5907 0.401979 ATCCCGAATCCACCTCCCAT 60.402 55.000 0.00 0.00 0.00 4.00
3663 5940 7.548427 AGAGATGAATGTTCTGACAACAGTATG 59.452 37.037 0.00 0.00 43.81 2.39
3913 6200 1.303309 ACCGCTAATGCTTCATCTGC 58.697 50.000 0.00 0.00 36.97 4.26
4041 6330 2.485426 CCAGCACGAGTTGATGAACAAT 59.515 45.455 0.00 0.00 45.06 2.71
4096 6388 8.956426 ACATAAAGAAAATATTGAAAGAGCGGA 58.044 29.630 0.00 0.00 0.00 5.54
4109 6401 7.283127 CAGAAGGGCAGCTACATAAAGAAAATA 59.717 37.037 0.00 0.00 0.00 1.40
4178 6470 2.604914 CAGTGTCGTATGTTGAGCATCC 59.395 50.000 0.00 0.00 38.94 3.51
4449 6742 2.500392 TTACGGGGCTGCTAACAAAT 57.500 45.000 0.00 0.00 0.00 2.32
4451 6744 1.745232 CATTACGGGGCTGCTAACAA 58.255 50.000 0.00 0.00 0.00 2.83
4490 6789 9.920946 AATATCTTGGAGCTTTAATACCTTCAA 57.079 29.630 0.00 0.00 0.00 2.69
4498 6797 6.543831 AGACGCAAATATCTTGGAGCTTTAAT 59.456 34.615 0.00 0.00 0.00 1.40
4505 6804 7.378966 TCCTATAAGACGCAAATATCTTGGAG 58.621 38.462 0.00 0.00 35.91 3.86
4519 6818 4.551388 GACTCCTTGCATCCTATAAGACG 58.449 47.826 0.00 0.00 0.00 4.18
4562 6864 7.093156 ACAGGTTGATGACAGATGAGAAATCTA 60.093 37.037 0.00 0.00 0.00 1.98
4648 6957 1.681264 TCTATGAATTCGCAGCTCCGA 59.319 47.619 0.00 0.00 35.09 4.55
4663 6972 8.991783 AAAGATGATATATTGGGGCATCTATG 57.008 34.615 12.03 0.00 43.38 2.23
4798 7209 9.725019 TGAAGACTAGAGAAAATCTTTTATGCA 57.275 29.630 0.00 0.00 39.64 3.96
5041 7913 0.408700 AACTGAGGGGTCGACCTACT 59.591 55.000 32.52 28.56 42.10 2.57
5086 7958 4.735662 TTTATGTACACGTCTTGGCAAC 57.264 40.909 0.00 0.00 0.00 4.17
5114 7986 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5115 7987 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
5116 7988 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5117 7989 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5118 7990 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5119 7991 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
5120 7992 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5121 7993 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
5122 7994 1.717194 TGCGACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
5123 7995 2.684001 ATGCGACAAGTAATTCCGGA 57.316 45.000 0.00 0.00 0.00 5.14
5124 7996 4.868450 TTTATGCGACAAGTAATTCCGG 57.132 40.909 0.00 0.00 0.00 5.14
5125 7997 5.806286 ACATTTATGCGACAAGTAATTCCG 58.194 37.500 0.00 0.00 0.00 4.30
5132 8004 9.515020 CCATTTTTATACATTTATGCGACAAGT 57.485 29.630 0.00 0.00 0.00 3.16
5133 8005 9.729023 TCCATTTTTATACATTTATGCGACAAG 57.271 29.630 0.00 0.00 0.00 3.16
5135 8007 9.676195 CATCCATTTTTATACATTTATGCGACA 57.324 29.630 0.00 0.00 0.00 4.35
5136 8008 8.638565 GCATCCATTTTTATACATTTATGCGAC 58.361 33.333 0.00 0.00 0.00 5.19
5137 8009 8.355913 TGCATCCATTTTTATACATTTATGCGA 58.644 29.630 0.00 0.00 38.99 5.10
5138 8010 8.518151 TGCATCCATTTTTATACATTTATGCG 57.482 30.769 0.00 0.00 38.99 4.73
5178 8050 9.170890 TGGATAAAAGGGAATGTATCTAGATGT 57.829 33.333 15.79 0.00 0.00 3.06
5184 8056 9.713684 TCAAAATGGATAAAAGGGAATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
5187 8059 9.486123 TCATCAAAATGGATAAAAGGGAATGTA 57.514 29.630 0.00 0.00 33.42 2.29
5188 8060 8.260114 GTCATCAAAATGGATAAAAGGGAATGT 58.740 33.333 0.00 0.00 33.42 2.71
5189 8061 8.259411 TGTCATCAAAATGGATAAAAGGGAATG 58.741 33.333 0.00 0.00 33.42 2.67
5190 8062 8.378115 TGTCATCAAAATGGATAAAAGGGAAT 57.622 30.769 0.00 0.00 33.42 3.01
5191 8063 7.789202 TGTCATCAAAATGGATAAAAGGGAA 57.211 32.000 0.00 0.00 33.42 3.97
5192 8064 7.789202 TTGTCATCAAAATGGATAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
5199 8071 9.964303 CGGAAATAATTGTCATCAAAATGGATA 57.036 29.630 0.00 0.00 37.11 2.59
5200 8072 7.927629 CCGGAAATAATTGTCATCAAAATGGAT 59.072 33.333 0.00 0.00 37.11 3.41
5201 8073 7.123397 TCCGGAAATAATTGTCATCAAAATGGA 59.877 33.333 0.00 0.00 37.11 3.41
5202 8074 7.222611 GTCCGGAAATAATTGTCATCAAAATGG 59.777 37.037 5.23 0.00 37.11 3.16
5203 8075 7.044117 CGTCCGGAAATAATTGTCATCAAAATG 60.044 37.037 5.23 0.00 37.11 2.32
5204 8076 6.972328 CGTCCGGAAATAATTGTCATCAAAAT 59.028 34.615 5.23 0.00 37.11 1.82
5205 8077 6.318628 CGTCCGGAAATAATTGTCATCAAAA 58.681 36.000 5.23 0.00 37.11 2.44
5206 8078 5.163703 CCGTCCGGAAATAATTGTCATCAAA 60.164 40.000 5.23 0.00 35.74 2.69
5207 8079 4.334203 CCGTCCGGAAATAATTGTCATCAA 59.666 41.667 5.23 0.00 37.50 2.57
5208 8080 3.874543 CCGTCCGGAAATAATTGTCATCA 59.125 43.478 5.23 0.00 37.50 3.07
5209 8081 4.124238 TCCGTCCGGAAATAATTGTCATC 58.876 43.478 5.23 0.00 42.05 2.92
5210 8082 4.127171 CTCCGTCCGGAAATAATTGTCAT 58.873 43.478 5.23 0.00 44.66 3.06
5211 8083 3.527533 CTCCGTCCGGAAATAATTGTCA 58.472 45.455 5.23 0.00 44.66 3.58
5212 8084 2.870411 CCTCCGTCCGGAAATAATTGTC 59.130 50.000 5.23 0.00 44.66 3.18
5213 8085 2.420967 CCCTCCGTCCGGAAATAATTGT 60.421 50.000 5.23 0.00 44.66 2.71
5214 8086 2.158871 TCCCTCCGTCCGGAAATAATTG 60.159 50.000 5.23 0.00 44.66 2.32
5215 8087 2.104281 CTCCCTCCGTCCGGAAATAATT 59.896 50.000 5.23 0.00 44.66 1.40
5216 8088 1.692519 CTCCCTCCGTCCGGAAATAAT 59.307 52.381 5.23 0.00 44.66 1.28
5217 8089 1.117150 CTCCCTCCGTCCGGAAATAA 58.883 55.000 5.23 0.00 44.66 1.40
5218 8090 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5219 8091 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5220 8092 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5221 8093 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
5222 8094 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
5223 8095 1.041447 AACATACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
5224 8096 0.102481 CAACATACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
5225 8097 1.192428 ACAACATACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
5226 8098 4.667519 ATAACAACATACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
5227 8099 6.742559 AATATAACAACATACTCCCTCCGT 57.257 37.500 0.00 0.00 0.00 4.69
5232 8104 9.933723 ACCGTAATAATATAACAACATACTCCC 57.066 33.333 0.00 0.00 0.00 4.30
5280 8152 3.306472 ACCAGTACCAACCAAATGTGT 57.694 42.857 0.00 0.00 0.00 3.72
5291 8163 1.348064 AGCAGCTACAACCAGTACCA 58.652 50.000 0.00 0.00 0.00 3.25
5360 8232 2.623878 TAAAGCAACCTCCACGTTGA 57.376 45.000 5.67 0.00 44.88 3.18
5424 8297 6.504398 TCTACAGCGTATAAACAGATTGAGG 58.496 40.000 0.00 0.00 0.00 3.86
5491 8366 9.710900 CACCAACAGCTGACAAGAATATATATA 57.289 33.333 23.35 0.00 0.00 0.86
5492 8367 7.663081 CCACCAACAGCTGACAAGAATATATAT 59.337 37.037 23.35 0.00 0.00 0.86
5493 8368 6.992123 CCACCAACAGCTGACAAGAATATATA 59.008 38.462 23.35 0.00 0.00 0.86
5494 8369 5.824624 CCACCAACAGCTGACAAGAATATAT 59.175 40.000 23.35 0.00 0.00 0.86
5588 8463 8.477419 TGGAAAGTGAAAAATCCTGATACTTT 57.523 30.769 0.00 0.00 38.97 2.66
5674 8552 8.579006 AGCAATATCATTTCAACTTGTTCAGAA 58.421 29.630 0.00 0.00 0.00 3.02
5716 8594 9.884814 AGGGAGTAAGAGACATAAATAGTGTAT 57.115 33.333 0.00 0.00 0.00 2.29
5717 8595 9.352191 GAGGGAGTAAGAGACATAAATAGTGTA 57.648 37.037 0.00 0.00 0.00 2.90
5718 8596 7.288158 GGAGGGAGTAAGAGACATAAATAGTGT 59.712 40.741 0.00 0.00 0.00 3.55
5719 8597 7.522399 CGGAGGGAGTAAGAGACATAAATAGTG 60.522 44.444 0.00 0.00 0.00 2.74
5720 8598 6.490721 CGGAGGGAGTAAGAGACATAAATAGT 59.509 42.308 0.00 0.00 0.00 2.12
5721 8599 6.715718 TCGGAGGGAGTAAGAGACATAAATAG 59.284 42.308 0.00 0.00 0.00 1.73
5722 8600 6.607970 TCGGAGGGAGTAAGAGACATAAATA 58.392 40.000 0.00 0.00 0.00 1.40
5723 8601 5.455872 TCGGAGGGAGTAAGAGACATAAAT 58.544 41.667 0.00 0.00 0.00 1.40
5724 8602 4.863548 TCGGAGGGAGTAAGAGACATAAA 58.136 43.478 0.00 0.00 0.00 1.40
5725 8603 4.515028 TCGGAGGGAGTAAGAGACATAA 57.485 45.455 0.00 0.00 0.00 1.90
5726 8604 4.506979 GGATCGGAGGGAGTAAGAGACATA 60.507 50.000 0.00 0.00 0.00 2.29
5727 8605 3.492337 GATCGGAGGGAGTAAGAGACAT 58.508 50.000 0.00 0.00 0.00 3.06
5728 8606 2.423088 GGATCGGAGGGAGTAAGAGACA 60.423 54.545 0.00 0.00 0.00 3.41
5729 8607 2.232399 GGATCGGAGGGAGTAAGAGAC 58.768 57.143 0.00 0.00 0.00 3.36
5730 8608 1.850998 TGGATCGGAGGGAGTAAGAGA 59.149 52.381 0.00 0.00 0.00 3.10
5731 8609 2.366640 TGGATCGGAGGGAGTAAGAG 57.633 55.000 0.00 0.00 0.00 2.85
5732 8610 2.840640 TTGGATCGGAGGGAGTAAGA 57.159 50.000 0.00 0.00 0.00 2.10
5733 8611 3.906720 TTTTGGATCGGAGGGAGTAAG 57.093 47.619 0.00 0.00 0.00 2.34
5734 8612 5.686650 GCTTATTTTGGATCGGAGGGAGTAA 60.687 44.000 0.00 0.00 0.00 2.24
5735 8613 4.202326 GCTTATTTTGGATCGGAGGGAGTA 60.202 45.833 0.00 0.00 0.00 2.59
5736 8614 3.433740 GCTTATTTTGGATCGGAGGGAGT 60.434 47.826 0.00 0.00 0.00 3.85
5737 8615 3.142174 GCTTATTTTGGATCGGAGGGAG 58.858 50.000 0.00 0.00 0.00 4.30
5738 8616 2.484770 CGCTTATTTTGGATCGGAGGGA 60.485 50.000 0.00 0.00 0.00 4.20
5739 8617 1.873591 CGCTTATTTTGGATCGGAGGG 59.126 52.381 0.00 0.00 0.00 4.30
5740 8618 2.561569 ACGCTTATTTTGGATCGGAGG 58.438 47.619 0.00 0.00 0.00 4.30
5741 8619 5.499047 GTTAACGCTTATTTTGGATCGGAG 58.501 41.667 0.00 0.00 0.00 4.63
5742 8620 4.333372 GGTTAACGCTTATTTTGGATCGGA 59.667 41.667 0.00 0.00 0.00 4.55
5743 8621 4.334481 AGGTTAACGCTTATTTTGGATCGG 59.666 41.667 0.00 0.00 0.00 4.18
5744 8622 5.479716 AGGTTAACGCTTATTTTGGATCG 57.520 39.130 0.00 0.00 0.00 3.69
5745 8623 7.982224 ACTAAGGTTAACGCTTATTTTGGATC 58.018 34.615 13.54 0.00 0.00 3.36
5746 8624 7.933215 ACTAAGGTTAACGCTTATTTTGGAT 57.067 32.000 13.54 0.00 0.00 3.41
5747 8625 7.360269 CGAACTAAGGTTAACGCTTATTTTGGA 60.360 37.037 13.54 0.00 35.58 3.53
5748 8626 6.739550 CGAACTAAGGTTAACGCTTATTTTGG 59.260 38.462 13.54 9.42 35.58 3.28
5749 8627 7.512297 TCGAACTAAGGTTAACGCTTATTTTG 58.488 34.615 17.23 17.23 35.58 2.44
5750 8628 7.656707 TCGAACTAAGGTTAACGCTTATTTT 57.343 32.000 13.54 10.92 35.58 1.82
5751 8629 7.656707 TTCGAACTAAGGTTAACGCTTATTT 57.343 32.000 13.54 13.75 35.58 1.40
5752 8630 7.386025 AGTTTCGAACTAAGGTTAACGCTTATT 59.614 33.333 13.54 8.17 40.69 1.40
5753 8631 6.870439 AGTTTCGAACTAAGGTTAACGCTTAT 59.130 34.615 13.54 4.38 40.69 1.73
5754 8632 6.144402 CAGTTTCGAACTAAGGTTAACGCTTA 59.856 38.462 0.00 12.88 40.46 3.09
5755 8633 5.050567 CAGTTTCGAACTAAGGTTAACGCTT 60.051 40.000 0.00 12.17 40.46 4.68
5756 8634 4.446719 CAGTTTCGAACTAAGGTTAACGCT 59.553 41.667 0.00 0.00 40.46 5.07
5757 8635 4.209911 ACAGTTTCGAACTAAGGTTAACGC 59.790 41.667 0.00 0.00 40.46 4.84
5758 8636 5.459762 TCACAGTTTCGAACTAAGGTTAACG 59.540 40.000 0.00 0.00 40.46 3.18
5759 8637 6.256321 TGTCACAGTTTCGAACTAAGGTTAAC 59.744 38.462 0.00 0.00 40.46 2.01
5760 8638 6.256321 GTGTCACAGTTTCGAACTAAGGTTAA 59.744 38.462 0.00 0.00 40.46 2.01
5761 8639 5.750067 GTGTCACAGTTTCGAACTAAGGTTA 59.250 40.000 0.00 0.00 40.46 2.85
5762 8640 4.569564 GTGTCACAGTTTCGAACTAAGGTT 59.430 41.667 0.00 0.00 40.46 3.50
5763 8641 4.117685 GTGTCACAGTTTCGAACTAAGGT 58.882 43.478 0.00 0.00 40.46 3.50
5764 8642 4.369182 AGTGTCACAGTTTCGAACTAAGG 58.631 43.478 5.62 0.00 40.46 2.69
5765 8643 5.968387 AAGTGTCACAGTTTCGAACTAAG 57.032 39.130 5.62 0.00 40.46 2.18
5766 8644 7.493320 ACAATAAGTGTCACAGTTTCGAACTAA 59.507 33.333 2.42 0.00 35.92 2.24
5767 8645 6.982141 ACAATAAGTGTCACAGTTTCGAACTA 59.018 34.615 2.42 0.00 35.92 2.24
5768 8646 5.815740 ACAATAAGTGTCACAGTTTCGAACT 59.184 36.000 2.42 0.00 38.01 3.01
5769 8647 5.901884 CACAATAAGTGTCACAGTTTCGAAC 59.098 40.000 2.42 0.00 43.40 3.95
5770 8648 6.043327 CACAATAAGTGTCACAGTTTCGAA 57.957 37.500 2.42 0.00 43.40 3.71
5771 8649 5.651172 CACAATAAGTGTCACAGTTTCGA 57.349 39.130 2.42 0.00 43.40 3.71
5784 8662 2.700897 CTCCCTCCGATCCACAATAAGT 59.299 50.000 0.00 0.00 0.00 2.24
5785 8663 2.548920 GCTCCCTCCGATCCACAATAAG 60.549 54.545 0.00 0.00 0.00 1.73
5786 8664 1.416401 GCTCCCTCCGATCCACAATAA 59.584 52.381 0.00 0.00 0.00 1.40
5787 8665 1.048601 GCTCCCTCCGATCCACAATA 58.951 55.000 0.00 0.00 0.00 1.90
5788 8666 0.982852 TGCTCCCTCCGATCCACAAT 60.983 55.000 0.00 0.00 0.00 2.71
5789 8667 1.612146 TGCTCCCTCCGATCCACAA 60.612 57.895 0.00 0.00 0.00 3.33
5790 8668 2.038813 TGCTCCCTCCGATCCACA 59.961 61.111 0.00 0.00 0.00 4.17
5791 8669 0.755698 TACTGCTCCCTCCGATCCAC 60.756 60.000 0.00 0.00 0.00 4.02
5792 8670 0.188587 ATACTGCTCCCTCCGATCCA 59.811 55.000 0.00 0.00 0.00 3.41
5793 8671 1.343069 AATACTGCTCCCTCCGATCC 58.657 55.000 0.00 0.00 0.00 3.36
5794 8672 3.477210 AAAATACTGCTCCCTCCGATC 57.523 47.619 0.00 0.00 0.00 3.69
5795 8673 3.456277 AGAAAAATACTGCTCCCTCCGAT 59.544 43.478 0.00 0.00 0.00 4.18
5796 8674 2.838202 AGAAAAATACTGCTCCCTCCGA 59.162 45.455 0.00 0.00 0.00 4.55
5797 8675 3.268023 AGAAAAATACTGCTCCCTCCG 57.732 47.619 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.