Multiple sequence alignment - TraesCS7B01G489500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G489500 chr7B 100.000 3610 0 0 1 3610 743458950 743455341 0.000000e+00 6667.0
1 TraesCS7B01G489500 chr7B 87.491 1375 153 12 1547 2920 743494067 743492711 0.000000e+00 1568.0
2 TraesCS7B01G489500 chr7B 85.112 1162 150 16 658 1801 743448262 743447106 0.000000e+00 1166.0
3 TraesCS7B01G489500 chr7B 81.069 1141 169 18 1820 2951 743433009 743431907 0.000000e+00 867.0
4 TraesCS7B01G489500 chr7B 84.218 735 96 11 331 1059 743502977 743502257 0.000000e+00 697.0
5 TraesCS7B01G489500 chr7A 94.191 2961 151 14 1 2954 736464831 736467777 0.000000e+00 4495.0
6 TraesCS7B01G489500 chr7A 82.353 2550 351 49 445 2948 736496363 736498859 0.000000e+00 2124.0
7 TraesCS7B01G489500 chr7A 86.492 1562 152 28 15 1553 736444362 736445887 0.000000e+00 1661.0
8 TraesCS7B01G489500 chr7A 92.245 245 19 0 2966 3210 736468156 736468400 7.420000e-92 348.0
9 TraesCS7B01G489500 chr7A 84.186 215 28 6 2966 3175 182395550 182395763 1.700000e-48 204.0
10 TraesCS7B01G489500 chr7A 92.754 69 5 0 59 127 736452075 736452143 2.290000e-17 100.0
11 TraesCS7B01G489500 chr7D 94.262 2771 144 9 174 2936 631936397 631933634 0.000000e+00 4222.0
12 TraesCS7B01G489500 chr7D 82.490 2313 323 49 658 2951 631921793 631919544 0.000000e+00 1953.0
13 TraesCS7B01G489500 chr7D 83.455 1100 152 20 676 1761 631968852 631967769 0.000000e+00 996.0
14 TraesCS7B01G489500 chr7D 81.175 1174 171 32 1790 2954 631958833 631957701 0.000000e+00 898.0
15 TraesCS7B01G489500 chr7D 81.743 1090 149 35 679 1761 631959879 631958833 0.000000e+00 865.0
16 TraesCS7B01G489500 chr7D 82.979 846 131 8 1790 2632 631967769 631966934 0.000000e+00 752.0
17 TraesCS7B01G489500 chr7D 80.083 969 164 17 1791 2755 631962328 631961385 0.000000e+00 693.0
18 TraesCS7B01G489500 chr7D 85.646 627 86 3 1132 1758 631964734 631964112 0.000000e+00 656.0
19 TraesCS7B01G489500 chr7D 87.448 478 55 3 317 793 631969935 631969462 2.450000e-151 545.0
20 TraesCS7B01G489500 chr7D 95.510 245 11 0 2966 3210 631933206 631932962 3.380000e-105 392.0
21 TraesCS7B01G489500 chr7D 90.000 180 13 4 1 179 631937978 631937803 1.010000e-55 228.0
22 TraesCS7B01G489500 chr7D 83.410 217 30 6 2966 3178 44311022 44310808 2.840000e-46 196.0
23 TraesCS7B01G489500 chr7D 83.938 193 29 2 1791 1983 631964108 631963918 2.210000e-42 183.0
24 TraesCS7B01G489500 chr7D 81.967 183 14 9 2788 2957 631966934 631966758 1.750000e-28 137.0
25 TraesCS7B01G489500 chr5B 96.419 391 13 1 3221 3610 639252225 639251835 0.000000e+00 643.0
26 TraesCS7B01G489500 chr5B 95.420 393 16 2 3219 3610 439239077 439239468 3.060000e-175 625.0
27 TraesCS7B01G489500 chr5B 84.651 215 24 6 2967 3175 265553783 265553994 4.720000e-49 206.0
28 TraesCS7B01G489500 chr6D 96.144 389 13 2 3221 3608 396473194 396473581 5.080000e-178 634.0
29 TraesCS7B01G489500 chr3D 95.908 391 15 1 3221 3610 213131723 213131333 1.830000e-177 632.0
30 TraesCS7B01G489500 chr3D 74.837 918 168 40 668 1542 39121015 39120118 1.230000e-94 357.0
31 TraesCS7B01G489500 chr3D 80.087 462 80 9 986 1435 39032883 39032422 2.080000e-87 333.0
32 TraesCS7B01G489500 chr2D 95.908 391 15 1 3221 3610 40641750 40642140 1.830000e-177 632.0
33 TraesCS7B01G489500 chr2D 95.396 391 16 2 3221 3610 289551535 289551146 3.960000e-174 621.0
34 TraesCS7B01G489500 chr2D 79.167 216 42 3 1192 1407 417544123 417544335 2.900000e-31 147.0
35 TraesCS7B01G489500 chr2D 75.111 225 43 8 1179 1392 52647228 52647450 3.840000e-15 93.5
36 TraesCS7B01G489500 chr2D 75.111 225 43 8 1179 1392 52852303 52852525 3.840000e-15 93.5
37 TraesCS7B01G489500 chr4D 95.652 391 16 1 3221 3610 351223453 351223063 8.510000e-176 627.0
38 TraesCS7B01G489500 chr4D 94.949 396 17 3 3216 3609 82797790 82797396 5.120000e-173 617.0
39 TraesCS7B01G489500 chr2A 95.396 391 16 2 3221 3610 480260045 480259656 3.960000e-174 621.0
40 TraesCS7B01G489500 chr3B 93.061 245 17 0 2966 3210 169366943 169366699 3.430000e-95 359.0
41 TraesCS7B01G489500 chr3B 84.360 211 25 8 2971 3175 228282815 228283023 2.200000e-47 200.0
42 TraesCS7B01G489500 chr5A 79.523 503 90 10 969 1460 459003931 459003431 2.670000e-91 346.0
43 TraesCS7B01G489500 chr6B 84.404 218 25 6 2967 3178 719317125 719316911 4.720000e-49 206.0
44 TraesCS7B01G489500 chr5D 83.962 212 28 6 2971 3178 497215558 497215349 7.910000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G489500 chr7B 743455341 743458950 3609 True 6667.000000 6667 100.000000 1 3610 1 chr7B.!!$R3 3609
1 TraesCS7B01G489500 chr7B 743492711 743494067 1356 True 1568.000000 1568 87.491000 1547 2920 1 chr7B.!!$R4 1373
2 TraesCS7B01G489500 chr7B 743447106 743448262 1156 True 1166.000000 1166 85.112000 658 1801 1 chr7B.!!$R2 1143
3 TraesCS7B01G489500 chr7B 743431907 743433009 1102 True 867.000000 867 81.069000 1820 2951 1 chr7B.!!$R1 1131
4 TraesCS7B01G489500 chr7B 743502257 743502977 720 True 697.000000 697 84.218000 331 1059 1 chr7B.!!$R5 728
5 TraesCS7B01G489500 chr7A 736464831 736468400 3569 False 2421.500000 4495 93.218000 1 3210 2 chr7A.!!$F5 3209
6 TraesCS7B01G489500 chr7A 736496363 736498859 2496 False 2124.000000 2124 82.353000 445 2948 1 chr7A.!!$F4 2503
7 TraesCS7B01G489500 chr7A 736444362 736445887 1525 False 1661.000000 1661 86.492000 15 1553 1 chr7A.!!$F2 1538
8 TraesCS7B01G489500 chr7D 631919544 631921793 2249 True 1953.000000 1953 82.490000 658 2951 1 chr7D.!!$R2 2293
9 TraesCS7B01G489500 chr7D 631932962 631937978 5016 True 1614.000000 4222 93.257333 1 3210 3 chr7D.!!$R3 3209
10 TraesCS7B01G489500 chr7D 631957701 631969935 12234 True 636.111111 996 83.159333 317 2957 9 chr7D.!!$R4 2640
11 TraesCS7B01G489500 chr3D 39120118 39121015 897 True 357.000000 357 74.837000 668 1542 1 chr3D.!!$R2 874
12 TraesCS7B01G489500 chr5A 459003431 459003931 500 True 346.000000 346 79.523000 969 1460 1 chr5A.!!$R1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 2439 0.321996 GCGTCTCCAAGGATATCCCC 59.678 60.0 18.56 0.0 36.42 4.81 F
1684 3905 0.391528 CATCCACCATGACACAGCGA 60.392 55.0 0.00 0.0 33.80 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 4694 0.107508 CATCGATGCCAACCCACTCT 60.108 55.0 13.37 0.0 0.00 3.24 R
3119 14672 0.462789 GCCTAGGCGGTGCTTAAGTA 59.537 55.0 20.16 0.0 34.25 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 6.089249 TGCCAGTGATGTGAGTATGTATAG 57.911 41.667 0.00 0.00 0.00 1.31
213 1627 1.423584 TCGGTCCCATCTATGCATGT 58.576 50.000 10.16 0.00 0.00 3.21
223 1637 4.770531 CCATCTATGCATGTGGGAATTCAT 59.229 41.667 10.16 0.00 0.00 2.57
308 1722 2.223618 GCAGAAGGTAGAGATCGGTCAC 60.224 54.545 0.00 0.00 0.00 3.67
312 1726 1.102222 GGTAGAGATCGGTCACGGCT 61.102 60.000 0.00 0.00 41.39 5.52
314 1728 0.393944 TAGAGATCGGTCACGGCTGT 60.394 55.000 0.00 0.00 41.39 4.40
354 1768 1.279271 GACCCTAGTTGTGGCTGACAT 59.721 52.381 0.00 0.00 33.40 3.06
412 1826 2.047274 CTGTGGCTGGGTGTACCG 60.047 66.667 0.00 0.00 44.64 4.02
470 1885 4.584327 AGATTTTGTGTAAACCTGTGGC 57.416 40.909 0.00 0.00 0.00 5.01
545 1960 6.824305 AAACAGTGGGCAATGCTATATATC 57.176 37.500 4.82 0.00 0.00 1.63
650 2065 1.591703 CACGAGAAGGGCTAGCACA 59.408 57.895 21.39 0.00 0.00 4.57
651 2066 0.737715 CACGAGAAGGGCTAGCACAC 60.738 60.000 21.39 12.85 0.00 3.82
652 2067 1.517257 CGAGAAGGGCTAGCACACG 60.517 63.158 21.39 14.76 0.00 4.49
653 2068 1.890894 GAGAAGGGCTAGCACACGA 59.109 57.895 21.39 0.00 0.00 4.35
655 2070 0.905357 AGAAGGGCTAGCACACGAAT 59.095 50.000 21.39 0.00 0.00 3.34
656 2071 2.100916 GAGAAGGGCTAGCACACGAATA 59.899 50.000 21.39 0.00 0.00 1.75
657 2072 2.159085 AGAAGGGCTAGCACACGAATAC 60.159 50.000 21.39 2.06 0.00 1.89
658 2073 1.191535 AGGGCTAGCACACGAATACA 58.808 50.000 21.39 0.00 0.00 2.29
660 2075 1.664151 GGGCTAGCACACGAATACAAC 59.336 52.381 18.24 0.00 0.00 3.32
661 2076 1.323534 GGCTAGCACACGAATACAACG 59.676 52.381 18.24 0.00 0.00 4.10
750 2185 2.039746 TGGATCCTCCAACACGACAAAT 59.960 45.455 14.23 0.00 45.00 2.32
850 2364 1.594331 AAGGTCTGGAAACGTTGAGC 58.406 50.000 0.00 4.38 0.00 4.26
907 2428 5.416271 AACTCCTATTTAAGCGTCTCCAA 57.584 39.130 0.00 0.00 0.00 3.53
917 2439 0.321996 GCGTCTCCAAGGATATCCCC 59.678 60.000 18.56 0.00 36.42 4.81
967 3171 9.611284 CATAAATTGTGTCCAATATTACCATCG 57.389 33.333 0.00 0.00 40.42 3.84
1185 3398 1.839994 CCATGGGAGCTACCAGAGAAA 59.160 52.381 25.14 0.00 45.20 2.52
1187 3400 2.327325 TGGGAGCTACCAGAGAAAGT 57.673 50.000 15.85 0.00 41.20 2.66
1206 3419 1.916181 GTGAAGATGGGGGAGAAGGAA 59.084 52.381 0.00 0.00 0.00 3.36
1410 3627 3.018856 GACCAACTGGATCATGCATGAA 58.981 45.455 31.79 15.77 38.35 2.57
1547 3766 5.763698 ACTCATGAATCATCAACATGCTAGG 59.236 40.000 0.00 0.00 39.49 3.02
1580 3799 7.865706 AGCTACTTATTTTGAACAATCCGAT 57.134 32.000 0.00 0.00 0.00 4.18
1608 3828 2.368875 ACCCCCAGCTGAATATTACTCG 59.631 50.000 17.39 0.00 0.00 4.18
1679 3900 2.420129 GGAGGTACATCCACCATGACAC 60.420 54.545 21.42 0.00 44.70 3.67
1684 3905 0.391528 CATCCACCATGACACAGCGA 60.392 55.000 0.00 0.00 33.80 4.93
1704 3925 3.427233 CGACCTCCTTTTGAGTAGGTACG 60.427 52.174 0.00 0.00 42.40 3.67
1760 3981 9.021807 GTAGATAATGTTCATACTAGTAGGCCA 57.978 37.037 5.01 9.01 0.00 5.36
1763 3984 6.808321 AATGTTCATACTAGTAGGCCAAGA 57.192 37.500 5.01 0.00 0.00 3.02
1984 4208 6.911511 GCTAATGAAAAAGTGATCAGCATCTC 59.088 38.462 0.00 0.00 0.00 2.75
2017 4241 1.001020 CACCTGGGGCATGCTACAA 60.001 57.895 18.92 3.66 0.00 2.41
2122 4346 3.511934 AGACTAAAGAAGATGGTGACGCT 59.488 43.478 0.00 0.00 0.00 5.07
2162 4386 2.936919 ACACAGGAGCAGAACATCAA 57.063 45.000 0.00 0.00 0.00 2.57
2342 4566 7.805163 TGATGAATTACCACTACATCAGGAAT 58.195 34.615 0.00 0.00 41.12 3.01
2450 4674 0.842030 TGGGTGCAGATCAGGGTCTT 60.842 55.000 0.00 0.00 0.00 3.01
2456 4680 2.846206 TGCAGATCAGGGTCTTATGGTT 59.154 45.455 0.00 0.00 0.00 3.67
2458 4682 3.118261 GCAGATCAGGGTCTTATGGTTGA 60.118 47.826 0.00 0.00 0.00 3.18
2490 4714 0.107703 GAGTGGGTTGGCATCGATGA 60.108 55.000 29.20 6.11 0.00 2.92
2602 13741 1.608590 GGGTATGGATGACATTTGGCG 59.391 52.381 0.00 0.00 41.03 5.69
2692 13837 3.887110 TCAGACGGTCGGTTGATATATGT 59.113 43.478 8.11 0.00 0.00 2.29
2962 14146 9.307121 TGTTTTCCATTAAATTATATTGCACCG 57.693 29.630 0.00 0.00 0.00 4.94
2963 14147 9.522804 GTTTTCCATTAAATTATATTGCACCGA 57.477 29.630 0.00 0.00 0.00 4.69
2995 14548 1.865248 GCACCGATATGCCAAACATGC 60.865 52.381 0.00 0.00 40.06 4.06
3133 14686 0.826062 TAGGGTACTTAAGCACCGCC 59.174 55.000 17.04 6.00 35.53 6.13
3179 14732 4.389576 GCTTGCGCCAACCACTCG 62.390 66.667 4.18 0.00 0.00 4.18
3203 14756 6.207213 GCATATATAGTACGTGACATAGGCC 58.793 44.000 0.00 0.00 0.00 5.19
3210 14763 0.103208 CGTGACATAGGCCTGGTCTC 59.897 60.000 28.82 25.32 32.84 3.36
3211 14764 1.195115 GTGACATAGGCCTGGTCTCA 58.805 55.000 28.82 16.73 32.84 3.27
3212 14765 1.765314 GTGACATAGGCCTGGTCTCAT 59.235 52.381 28.82 8.95 32.84 2.90
3213 14766 2.042464 TGACATAGGCCTGGTCTCATC 58.958 52.381 28.82 13.69 32.84 2.92
3214 14767 2.324541 GACATAGGCCTGGTCTCATCT 58.675 52.381 24.47 0.00 0.00 2.90
3215 14768 2.298729 GACATAGGCCTGGTCTCATCTC 59.701 54.545 24.47 2.05 0.00 2.75
3216 14769 2.323599 CATAGGCCTGGTCTCATCTCA 58.676 52.381 17.99 0.00 0.00 3.27
3217 14770 2.079170 TAGGCCTGGTCTCATCTCAG 57.921 55.000 17.99 0.00 0.00 3.35
3218 14771 0.337773 AGGCCTGGTCTCATCTCAGA 59.662 55.000 3.11 0.00 0.00 3.27
3219 14772 1.198713 GGCCTGGTCTCATCTCAGAA 58.801 55.000 0.00 0.00 0.00 3.02
3220 14773 1.767681 GGCCTGGTCTCATCTCAGAAT 59.232 52.381 0.00 0.00 0.00 2.40
3221 14774 2.968574 GGCCTGGTCTCATCTCAGAATA 59.031 50.000 0.00 0.00 0.00 1.75
3222 14775 3.389329 GGCCTGGTCTCATCTCAGAATAA 59.611 47.826 0.00 0.00 0.00 1.40
3223 14776 4.502950 GGCCTGGTCTCATCTCAGAATAAG 60.503 50.000 0.00 0.00 0.00 1.73
3224 14777 4.502950 GCCTGGTCTCATCTCAGAATAAGG 60.503 50.000 0.00 0.00 0.00 2.69
3225 14778 4.502950 CCTGGTCTCATCTCAGAATAAGGC 60.503 50.000 0.00 0.00 0.00 4.35
3226 14779 3.389329 TGGTCTCATCTCAGAATAAGGCC 59.611 47.826 0.00 0.00 0.00 5.19
3227 14780 3.244387 GGTCTCATCTCAGAATAAGGCCC 60.244 52.174 0.00 0.00 0.00 5.80
3228 14781 3.645687 GTCTCATCTCAGAATAAGGCCCT 59.354 47.826 0.00 0.00 0.00 5.19
3229 14782 3.645212 TCTCATCTCAGAATAAGGCCCTG 59.355 47.826 0.00 0.00 0.00 4.45
3230 14783 3.387962 TCATCTCAGAATAAGGCCCTGT 58.612 45.455 0.00 0.00 0.00 4.00
3231 14784 3.782523 TCATCTCAGAATAAGGCCCTGTT 59.217 43.478 0.00 0.00 0.00 3.16
3232 14785 4.228210 TCATCTCAGAATAAGGCCCTGTTT 59.772 41.667 0.00 0.00 0.00 2.83
3233 14786 3.955471 TCTCAGAATAAGGCCCTGTTTG 58.045 45.455 0.00 0.00 0.00 2.93
3234 14787 3.019564 CTCAGAATAAGGCCCTGTTTGG 58.980 50.000 0.00 0.00 0.00 3.28
3235 14788 2.378547 TCAGAATAAGGCCCTGTTTGGT 59.621 45.455 0.00 0.00 0.00 3.67
3236 14789 3.165071 CAGAATAAGGCCCTGTTTGGTT 58.835 45.455 0.00 0.00 0.00 3.67
3237 14790 3.193479 CAGAATAAGGCCCTGTTTGGTTC 59.807 47.826 0.00 0.00 0.00 3.62
3238 14791 2.990740 ATAAGGCCCTGTTTGGTTCA 57.009 45.000 0.00 0.00 0.00 3.18
3239 14792 2.990740 TAAGGCCCTGTTTGGTTCAT 57.009 45.000 0.00 0.00 0.00 2.57
3240 14793 2.990740 AAGGCCCTGTTTGGTTCATA 57.009 45.000 0.00 0.00 0.00 2.15
3241 14794 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
3242 14795 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
3243 14796 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
3244 14797 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
3245 14798 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
3246 14799 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
3247 14800 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
3248 14801 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
3249 14802 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
3250 14803 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
3251 14804 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
3277 14830 9.731819 CTTTTTCTAGTCCAAACTAAAAAGTCC 57.268 33.333 13.30 0.00 41.21 3.85
3278 14831 7.812690 TTTCTAGTCCAAACTAAAAAGTCCC 57.187 36.000 0.00 0.00 37.53 4.46
3279 14832 6.758806 TCTAGTCCAAACTAAAAAGTCCCT 57.241 37.500 0.00 0.00 37.53 4.20
3280 14833 7.860649 TCTAGTCCAAACTAAAAAGTCCCTA 57.139 36.000 0.00 0.00 37.53 3.53
3281 14834 7.904205 TCTAGTCCAAACTAAAAAGTCCCTAG 58.096 38.462 0.00 0.00 37.53 3.02
3282 14835 6.511017 AGTCCAAACTAAAAAGTCCCTAGT 57.489 37.500 0.00 0.00 32.59 2.57
3283 14836 6.531923 AGTCCAAACTAAAAAGTCCCTAGTC 58.468 40.000 0.00 0.00 32.59 2.59
3284 14837 5.704515 GTCCAAACTAAAAAGTCCCTAGTCC 59.295 44.000 0.00 0.00 0.00 3.85
3285 14838 5.008331 CCAAACTAAAAAGTCCCTAGTCCC 58.992 45.833 0.00 0.00 0.00 4.46
3286 14839 5.222068 CCAAACTAAAAAGTCCCTAGTCCCT 60.222 44.000 0.00 0.00 0.00 4.20
3287 14840 6.013119 CCAAACTAAAAAGTCCCTAGTCCCTA 60.013 42.308 0.00 0.00 0.00 3.53
3288 14841 7.455891 CAAACTAAAAAGTCCCTAGTCCCTAA 58.544 38.462 0.00 0.00 0.00 2.69
3289 14842 7.637548 AACTAAAAAGTCCCTAGTCCCTAAA 57.362 36.000 0.00 0.00 0.00 1.85
3290 14843 7.637548 ACTAAAAAGTCCCTAGTCCCTAAAA 57.362 36.000 0.00 0.00 0.00 1.52
3291 14844 8.049165 ACTAAAAAGTCCCTAGTCCCTAAAAA 57.951 34.615 0.00 0.00 0.00 1.94
3292 14845 8.162085 ACTAAAAAGTCCCTAGTCCCTAAAAAG 58.838 37.037 0.00 0.00 0.00 2.27
3293 14846 6.526056 AAAAGTCCCTAGTCCCTAAAAAGT 57.474 37.500 0.00 0.00 0.00 2.66
3294 14847 5.758790 AAGTCCCTAGTCCCTAAAAAGTC 57.241 43.478 0.00 0.00 0.00 3.01
3295 14848 4.102598 AGTCCCTAGTCCCTAAAAAGTCC 58.897 47.826 0.00 0.00 0.00 3.85
3296 14849 3.199508 GTCCCTAGTCCCTAAAAAGTCCC 59.800 52.174 0.00 0.00 0.00 4.46
3297 14850 3.080153 TCCCTAGTCCCTAAAAAGTCCCT 59.920 47.826 0.00 0.00 0.00 4.20
3298 14851 3.455177 CCCTAGTCCCTAAAAAGTCCCTC 59.545 52.174 0.00 0.00 0.00 4.30
3299 14852 3.455177 CCTAGTCCCTAAAAAGTCCCTCC 59.545 52.174 0.00 0.00 0.00 4.30
3300 14853 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
3301 14854 2.157833 AGTCCCTAAAAAGTCCCTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
3302 14855 2.026169 GTCCCTAAAAAGTCCCTCCCTG 60.026 54.545 0.00 0.00 0.00 4.45
3303 14856 1.993301 CCCTAAAAAGTCCCTCCCTGT 59.007 52.381 0.00 0.00 0.00 4.00
3304 14857 2.378886 CCCTAAAAAGTCCCTCCCTGTT 59.621 50.000 0.00 0.00 0.00 3.16
3305 14858 3.181422 CCCTAAAAAGTCCCTCCCTGTTT 60.181 47.826 0.00 0.00 0.00 2.83
3306 14859 3.826729 CCTAAAAAGTCCCTCCCTGTTTG 59.173 47.826 0.00 0.00 0.00 2.93
3307 14860 3.398318 AAAAAGTCCCTCCCTGTTTGT 57.602 42.857 0.00 0.00 0.00 2.83
3308 14861 3.398318 AAAAGTCCCTCCCTGTTTGTT 57.602 42.857 0.00 0.00 0.00 2.83
3309 14862 3.398318 AAAGTCCCTCCCTGTTTGTTT 57.602 42.857 0.00 0.00 0.00 2.83
3310 14863 3.398318 AAGTCCCTCCCTGTTTGTTTT 57.602 42.857 0.00 0.00 0.00 2.43
3311 14864 2.945456 AGTCCCTCCCTGTTTGTTTTC 58.055 47.619 0.00 0.00 0.00 2.29
3312 14865 2.243736 AGTCCCTCCCTGTTTGTTTTCA 59.756 45.455 0.00 0.00 0.00 2.69
3313 14866 3.028130 GTCCCTCCCTGTTTGTTTTCAA 58.972 45.455 0.00 0.00 38.10 2.69
3314 14867 3.068165 GTCCCTCCCTGTTTGTTTTCAAG 59.932 47.826 0.00 0.00 41.09 3.02
3315 14868 2.365293 CCCTCCCTGTTTGTTTTCAAGG 59.635 50.000 0.00 0.00 41.09 3.61
3316 14869 3.295973 CCTCCCTGTTTGTTTTCAAGGA 58.704 45.455 0.00 0.00 41.09 3.36
3317 14870 3.068165 CCTCCCTGTTTGTTTTCAAGGAC 59.932 47.826 0.00 0.00 41.09 3.85
3318 14871 3.954258 CTCCCTGTTTGTTTTCAAGGACT 59.046 43.478 0.00 0.00 41.09 3.85
3319 14872 5.118729 TCCCTGTTTGTTTTCAAGGACTA 57.881 39.130 0.00 0.00 41.09 2.59
3320 14873 5.511363 TCCCTGTTTGTTTTCAAGGACTAA 58.489 37.500 0.00 0.00 41.09 2.24
3321 14874 5.952947 TCCCTGTTTGTTTTCAAGGACTAAA 59.047 36.000 0.00 0.00 41.09 1.85
3322 14875 6.437793 TCCCTGTTTGTTTTCAAGGACTAAAA 59.562 34.615 0.00 0.00 41.09 1.52
3323 14876 7.038941 TCCCTGTTTGTTTTCAAGGACTAAAAA 60.039 33.333 0.00 0.00 41.09 1.94
3324 14877 7.277760 CCCTGTTTGTTTTCAAGGACTAAAAAG 59.722 37.037 0.00 0.00 41.09 2.27
3325 14878 7.817478 CCTGTTTGTTTTCAAGGACTAAAAAGT 59.183 33.333 0.00 0.00 41.09 2.66
3326 14879 8.751302 TGTTTGTTTTCAAGGACTAAAAAGTC 57.249 30.769 0.00 0.00 41.09 3.01
3337 14890 5.341872 GACTAAAAAGTCCCTAGTCCCTC 57.658 47.826 0.00 0.00 36.91 4.30
3338 14891 4.102598 ACTAAAAAGTCCCTAGTCCCTCC 58.897 47.826 0.00 0.00 0.00 4.30
3339 14892 1.968278 AAAAGTCCCTAGTCCCTCCC 58.032 55.000 0.00 0.00 0.00 4.30
3340 14893 1.102938 AAAGTCCCTAGTCCCTCCCT 58.897 55.000 0.00 0.00 0.00 4.20
3341 14894 2.012168 AAGTCCCTAGTCCCTCCCTA 57.988 55.000 0.00 0.00 0.00 3.53
3342 14895 1.536644 AGTCCCTAGTCCCTCCCTAG 58.463 60.000 0.00 0.00 33.23 3.02
3343 14896 1.012302 AGTCCCTAGTCCCTCCCTAGA 59.988 57.143 0.00 0.00 35.01 2.43
3344 14897 1.426215 GTCCCTAGTCCCTCCCTAGAG 59.574 61.905 0.00 0.00 40.09 2.43
3359 14912 7.374975 CTCCCTAGAGGTTATTAAATGACCA 57.625 40.000 6.26 0.00 41.10 4.02
3360 14913 7.947782 TCCCTAGAGGTTATTAAATGACCAT 57.052 36.000 6.26 0.00 41.10 3.55
3361 14914 7.745717 TCCCTAGAGGTTATTAAATGACCATG 58.254 38.462 6.26 0.00 41.10 3.66
3362 14915 7.349859 TCCCTAGAGGTTATTAAATGACCATGT 59.650 37.037 6.26 0.00 41.10 3.21
3363 14916 7.998964 CCCTAGAGGTTATTAAATGACCATGTT 59.001 37.037 6.26 0.00 41.10 2.71
3366 14919 8.747538 AGAGGTTATTAAATGACCATGTTACC 57.252 34.615 6.26 0.00 41.10 2.85
3367 14920 7.778382 AGAGGTTATTAAATGACCATGTTACCC 59.222 37.037 6.26 0.00 41.10 3.69
3368 14921 6.837048 AGGTTATTAAATGACCATGTTACCCC 59.163 38.462 6.26 0.00 41.10 4.95
3369 14922 6.837048 GGTTATTAAATGACCATGTTACCCCT 59.163 38.462 0.00 0.00 38.68 4.79
3370 14923 8.000127 GGTTATTAAATGACCATGTTACCCCTA 59.000 37.037 0.00 0.00 38.68 3.53
3371 14924 9.063615 GTTATTAAATGACCATGTTACCCCTAG 57.936 37.037 0.00 0.00 0.00 3.02
3372 14925 6.645884 TTAAATGACCATGTTACCCCTAGT 57.354 37.500 0.00 0.00 0.00 2.57
3373 14926 7.752518 TTAAATGACCATGTTACCCCTAGTA 57.247 36.000 0.00 0.00 0.00 1.82
3374 14927 6.841781 AAATGACCATGTTACCCCTAGTAT 57.158 37.500 0.00 0.00 0.00 2.12
3375 14928 7.941053 AAATGACCATGTTACCCCTAGTATA 57.059 36.000 0.00 0.00 0.00 1.47
3376 14929 6.930068 ATGACCATGTTACCCCTAGTATAC 57.070 41.667 0.00 0.00 0.00 1.47
3377 14930 5.779636 TGACCATGTTACCCCTAGTATACA 58.220 41.667 5.50 0.00 0.00 2.29
3378 14931 6.203813 TGACCATGTTACCCCTAGTATACAA 58.796 40.000 5.50 0.00 30.80 2.41
3379 14932 6.673097 TGACCATGTTACCCCTAGTATACAAA 59.327 38.462 5.50 0.00 30.80 2.83
3380 14933 7.182387 TGACCATGTTACCCCTAGTATACAAAA 59.818 37.037 5.50 0.00 30.80 2.44
3381 14934 7.931046 ACCATGTTACCCCTAGTATACAAAAA 58.069 34.615 5.50 0.00 30.80 1.94
3402 14955 7.929941 AAAAATAACAACCAAACAACACCAT 57.070 28.000 0.00 0.00 0.00 3.55
3403 14956 6.917217 AAATAACAACCAAACAACACCATG 57.083 33.333 0.00 0.00 0.00 3.66
3404 14957 2.977772 ACAACCAAACAACACCATGG 57.022 45.000 11.19 11.19 38.91 3.66
3405 14958 1.484240 ACAACCAAACAACACCATGGG 59.516 47.619 18.09 7.72 37.26 4.00
3406 14959 1.127343 AACCAAACAACACCATGGGG 58.873 50.000 14.08 14.08 37.26 4.96
3407 14960 1.370810 CCAAACAACACCATGGGGC 59.629 57.895 15.93 0.00 37.90 5.80
3408 14961 1.006337 CAAACAACACCATGGGGCG 60.006 57.895 15.93 8.39 37.90 6.13
3409 14962 2.206536 AAACAACACCATGGGGCGG 61.207 57.895 15.93 9.17 37.90 6.13
3430 14983 4.864334 GGCGATGGGTGCAGGGAG 62.864 72.222 0.00 0.00 0.00 4.30
3431 14984 4.864334 GCGATGGGTGCAGGGAGG 62.864 72.222 0.00 0.00 0.00 4.30
3432 14985 4.181010 CGATGGGTGCAGGGAGGG 62.181 72.222 0.00 0.00 0.00 4.30
3433 14986 3.813724 GATGGGTGCAGGGAGGGG 61.814 72.222 0.00 0.00 0.00 4.79
3437 14990 4.066139 GGTGCAGGGAGGGGCATT 62.066 66.667 0.00 0.00 42.75 3.56
3438 14991 2.757099 GTGCAGGGAGGGGCATTG 60.757 66.667 0.00 0.00 42.75 2.82
3439 14992 3.267233 TGCAGGGAGGGGCATTGT 61.267 61.111 0.00 0.00 34.58 2.71
3440 14993 2.037847 GCAGGGAGGGGCATTGTT 59.962 61.111 0.00 0.00 0.00 2.83
3441 14994 2.353610 GCAGGGAGGGGCATTGTTG 61.354 63.158 0.00 0.00 0.00 3.33
3442 14995 1.683365 CAGGGAGGGGCATTGTTGG 60.683 63.158 0.00 0.00 0.00 3.77
3443 14996 1.856873 AGGGAGGGGCATTGTTGGA 60.857 57.895 0.00 0.00 0.00 3.53
3444 14997 1.078347 GGGAGGGGCATTGTTGGAA 59.922 57.895 0.00 0.00 0.00 3.53
3445 14998 0.544120 GGGAGGGGCATTGTTGGAAA 60.544 55.000 0.00 0.00 0.00 3.13
3446 14999 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
3447 15000 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
3448 15001 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
3449 15002 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
3450 15003 1.001974 GGGGCATTGTTGGAAAAGTCC 59.998 52.381 0.00 0.00 45.21 3.85
3451 15004 1.970640 GGGCATTGTTGGAAAAGTCCT 59.029 47.619 0.00 0.00 45.22 3.85
3452 15005 3.161866 GGGCATTGTTGGAAAAGTCCTA 58.838 45.455 0.00 0.00 45.22 2.94
3453 15006 3.576550 GGGCATTGTTGGAAAAGTCCTAA 59.423 43.478 0.00 0.00 45.22 2.69
3454 15007 4.039852 GGGCATTGTTGGAAAAGTCCTAAA 59.960 41.667 0.00 0.00 45.22 1.85
3455 15008 5.454045 GGGCATTGTTGGAAAAGTCCTAAAA 60.454 40.000 0.00 0.00 45.22 1.52
3456 15009 6.052360 GGCATTGTTGGAAAAGTCCTAAAAA 58.948 36.000 0.00 0.00 45.22 1.94
3457 15010 6.202762 GGCATTGTTGGAAAAGTCCTAAAAAG 59.797 38.462 0.00 0.00 45.22 2.27
3458 15011 6.761242 GCATTGTTGGAAAAGTCCTAAAAAGT 59.239 34.615 0.00 0.00 45.22 2.66
3459 15012 7.042725 GCATTGTTGGAAAAGTCCTAAAAAGTC 60.043 37.037 0.00 0.00 45.22 3.01
3460 15013 6.459670 TGTTGGAAAAGTCCTAAAAAGTCC 57.540 37.500 0.00 0.00 45.22 3.85
3461 15014 5.361571 TGTTGGAAAAGTCCTAAAAAGTCCC 59.638 40.000 0.00 0.00 45.22 4.46
3462 15015 5.132043 TGGAAAAGTCCTAAAAAGTCCCA 57.868 39.130 0.00 0.00 45.22 4.37
3463 15016 5.520751 TGGAAAAGTCCTAAAAAGTCCCAA 58.479 37.500 0.00 0.00 45.22 4.12
3464 15017 5.958987 TGGAAAAGTCCTAAAAAGTCCCAAA 59.041 36.000 0.00 0.00 45.22 3.28
3465 15018 6.440965 TGGAAAAGTCCTAAAAAGTCCCAAAA 59.559 34.615 0.00 0.00 45.22 2.44
3466 15019 7.038231 TGGAAAAGTCCTAAAAAGTCCCAAAAA 60.038 33.333 0.00 0.00 45.22 1.94
3496 15049 8.839310 TCTCCTTGAGAGTTTTCTTCATTTAG 57.161 34.615 0.00 0.00 43.71 1.85
3497 15050 8.432805 TCTCCTTGAGAGTTTTCTTCATTTAGT 58.567 33.333 0.00 0.00 43.71 2.24
3498 15051 8.608844 TCCTTGAGAGTTTTCTTCATTTAGTC 57.391 34.615 0.00 0.00 32.53 2.59
3499 15052 7.661847 TCCTTGAGAGTTTTCTTCATTTAGTCC 59.338 37.037 0.00 0.00 32.53 3.85
3500 15053 7.094592 CCTTGAGAGTTTTCTTCATTTAGTCCC 60.095 40.741 0.00 0.00 32.53 4.46
3501 15054 6.837312 TGAGAGTTTTCTTCATTTAGTCCCA 58.163 36.000 0.00 0.00 32.53 4.37
3502 15055 7.287061 TGAGAGTTTTCTTCATTTAGTCCCAA 58.713 34.615 0.00 0.00 32.53 4.12
3503 15056 7.777910 TGAGAGTTTTCTTCATTTAGTCCCAAA 59.222 33.333 0.00 0.00 32.53 3.28
3504 15057 8.533569 AGAGTTTTCTTCATTTAGTCCCAAAA 57.466 30.769 0.00 0.00 0.00 2.44
3505 15058 8.977412 AGAGTTTTCTTCATTTAGTCCCAAAAA 58.023 29.630 0.00 0.00 0.00 1.94
3506 15059 9.249457 GAGTTTTCTTCATTTAGTCCCAAAAAG 57.751 33.333 0.00 0.00 0.00 2.27
3507 15060 7.710907 AGTTTTCTTCATTTAGTCCCAAAAAGC 59.289 33.333 0.00 0.00 0.00 3.51
3508 15061 6.723298 TTCTTCATTTAGTCCCAAAAAGCA 57.277 33.333 0.00 0.00 0.00 3.91
3509 15062 6.723298 TCTTCATTTAGTCCCAAAAAGCAA 57.277 33.333 0.00 0.00 0.00 3.91
3510 15063 6.512297 TCTTCATTTAGTCCCAAAAAGCAAC 58.488 36.000 0.00 0.00 0.00 4.17
3511 15064 6.323739 TCTTCATTTAGTCCCAAAAAGCAACT 59.676 34.615 0.00 0.00 0.00 3.16
3512 15065 6.478512 TCATTTAGTCCCAAAAAGCAACTT 57.521 33.333 0.00 0.00 0.00 2.66
3513 15066 6.883744 TCATTTAGTCCCAAAAAGCAACTTT 58.116 32.000 0.00 0.00 34.94 2.66
3514 15067 7.334858 TCATTTAGTCCCAAAAAGCAACTTTT 58.665 30.769 0.00 0.00 44.27 2.27
3515 15068 8.478877 TCATTTAGTCCCAAAAAGCAACTTTTA 58.521 29.630 5.79 0.00 41.98 1.52
3516 15069 8.764287 CATTTAGTCCCAAAAAGCAACTTTTAG 58.236 33.333 5.79 1.81 41.98 1.85
3517 15070 5.932619 AGTCCCAAAAAGCAACTTTTAGT 57.067 34.783 5.79 0.00 41.98 2.24
3518 15071 5.902681 AGTCCCAAAAAGCAACTTTTAGTC 58.097 37.500 5.79 0.00 41.98 2.59
3519 15072 5.047847 GTCCCAAAAAGCAACTTTTAGTCC 58.952 41.667 5.79 0.00 41.98 3.85
3520 15073 4.100344 TCCCAAAAAGCAACTTTTAGTCCC 59.900 41.667 5.79 0.00 41.98 4.46
3521 15074 4.100963 CCCAAAAAGCAACTTTTAGTCCCT 59.899 41.667 5.79 0.00 41.98 4.20
3522 15075 5.303333 CCCAAAAAGCAACTTTTAGTCCCTA 59.697 40.000 5.79 0.00 41.98 3.53
3523 15076 6.447162 CCAAAAAGCAACTTTTAGTCCCTAG 58.553 40.000 5.79 0.00 41.98 3.02
3524 15077 6.040504 CCAAAAAGCAACTTTTAGTCCCTAGT 59.959 38.462 5.79 0.00 41.98 2.57
3525 15078 7.229907 CCAAAAAGCAACTTTTAGTCCCTAGTA 59.770 37.037 5.79 0.00 41.98 1.82
3526 15079 7.981102 AAAAGCAACTTTTAGTCCCTAGTAG 57.019 36.000 3.57 0.00 41.17 2.57
3527 15080 6.683312 AAGCAACTTTTAGTCCCTAGTAGT 57.317 37.500 0.00 0.00 0.00 2.73
3528 15081 6.283544 AGCAACTTTTAGTCCCTAGTAGTC 57.716 41.667 0.00 0.00 0.00 2.59
3529 15082 5.187381 AGCAACTTTTAGTCCCTAGTAGTCC 59.813 44.000 0.00 0.00 0.00 3.85
3530 15083 5.626347 GCAACTTTTAGTCCCTAGTAGTCCC 60.626 48.000 0.00 0.00 0.00 4.46
3531 15084 5.549229 ACTTTTAGTCCCTAGTAGTCCCT 57.451 43.478 0.00 0.00 0.00 4.20
3532 15085 5.517924 ACTTTTAGTCCCTAGTAGTCCCTC 58.482 45.833 0.00 0.00 0.00 4.30
3533 15086 5.016031 ACTTTTAGTCCCTAGTAGTCCCTCA 59.984 44.000 0.00 0.00 0.00 3.86
3534 15087 5.745988 TTTAGTCCCTAGTAGTCCCTCAT 57.254 43.478 0.00 0.00 0.00 2.90
3535 15088 3.603965 AGTCCCTAGTAGTCCCTCATG 57.396 52.381 0.00 0.00 0.00 3.07
3536 15089 2.860041 AGTCCCTAGTAGTCCCTCATGT 59.140 50.000 0.00 0.00 0.00 3.21
3537 15090 3.272551 AGTCCCTAGTAGTCCCTCATGTT 59.727 47.826 0.00 0.00 0.00 2.71
3538 15091 4.031611 GTCCCTAGTAGTCCCTCATGTTT 58.968 47.826 0.00 0.00 0.00 2.83
3539 15092 4.030913 TCCCTAGTAGTCCCTCATGTTTG 58.969 47.826 0.00 0.00 0.00 2.93
3540 15093 3.134804 CCCTAGTAGTCCCTCATGTTTGG 59.865 52.174 0.00 0.00 0.00 3.28
3541 15094 3.775316 CCTAGTAGTCCCTCATGTTTGGT 59.225 47.826 0.00 0.00 0.00 3.67
3542 15095 4.225267 CCTAGTAGTCCCTCATGTTTGGTT 59.775 45.833 0.00 0.00 0.00 3.67
3543 15096 5.424252 CCTAGTAGTCCCTCATGTTTGGTTA 59.576 44.000 0.00 0.00 0.00 2.85
3544 15097 5.836024 AGTAGTCCCTCATGTTTGGTTAA 57.164 39.130 0.00 0.00 0.00 2.01
3545 15098 6.195600 AGTAGTCCCTCATGTTTGGTTAAA 57.804 37.500 0.00 0.00 0.00 1.52
3546 15099 6.607019 AGTAGTCCCTCATGTTTGGTTAAAA 58.393 36.000 0.00 0.00 0.00 1.52
3547 15100 7.064229 AGTAGTCCCTCATGTTTGGTTAAAAA 58.936 34.615 0.00 0.00 0.00 1.94
3548 15101 6.405278 AGTCCCTCATGTTTGGTTAAAAAG 57.595 37.500 0.00 0.00 0.00 2.27
3549 15102 5.897250 AGTCCCTCATGTTTGGTTAAAAAGT 59.103 36.000 0.00 0.00 0.00 2.66
3550 15103 6.040504 AGTCCCTCATGTTTGGTTAAAAAGTC 59.959 38.462 0.00 0.00 0.00 3.01
3551 15104 6.040504 GTCCCTCATGTTTGGTTAAAAAGTCT 59.959 38.462 0.00 0.00 0.00 3.24
3552 15105 6.264518 TCCCTCATGTTTGGTTAAAAAGTCTC 59.735 38.462 0.00 0.00 0.00 3.36
3553 15106 6.265422 CCCTCATGTTTGGTTAAAAAGTCTCT 59.735 38.462 0.00 0.00 0.00 3.10
3554 15107 7.447238 CCCTCATGTTTGGTTAAAAAGTCTCTA 59.553 37.037 0.00 0.00 0.00 2.43
3555 15108 8.846211 CCTCATGTTTGGTTAAAAAGTCTCTAA 58.154 33.333 0.00 0.00 0.00 2.10
3556 15109 9.884465 CTCATGTTTGGTTAAAAAGTCTCTAAG 57.116 33.333 0.00 0.00 0.00 2.18
3557 15110 9.621629 TCATGTTTGGTTAAAAAGTCTCTAAGA 57.378 29.630 0.00 0.00 0.00 2.10
3558 15111 9.884465 CATGTTTGGTTAAAAAGTCTCTAAGAG 57.116 33.333 0.00 0.00 0.00 2.85
3559 15112 8.446599 TGTTTGGTTAAAAAGTCTCTAAGAGG 57.553 34.615 0.00 0.00 0.00 3.69
3560 15113 7.501225 TGTTTGGTTAAAAAGTCTCTAAGAGGG 59.499 37.037 0.00 0.00 0.00 4.30
3561 15114 7.383156 TTGGTTAAAAAGTCTCTAAGAGGGA 57.617 36.000 0.00 0.00 0.00 4.20
3562 15115 6.766429 TGGTTAAAAAGTCTCTAAGAGGGAC 58.234 40.000 1.91 1.91 0.00 4.46
3571 15124 7.712204 AGTCTCTAAGAGGGACTTTTTCTAG 57.288 40.000 3.06 0.00 41.55 2.43
3572 15125 7.243091 AGTCTCTAAGAGGGACTTTTTCTAGT 58.757 38.462 3.06 0.00 41.55 2.57
3573 15126 7.395206 AGTCTCTAAGAGGGACTTTTTCTAGTC 59.605 40.741 3.06 0.00 41.55 2.59
3582 15135 5.479124 GACTTTTTCTAGTCCCTACACCA 57.521 43.478 0.00 0.00 38.88 4.17
3583 15136 5.861727 GACTTTTTCTAGTCCCTACACCAA 58.138 41.667 0.00 0.00 38.88 3.67
3584 15137 6.256643 ACTTTTTCTAGTCCCTACACCAAA 57.743 37.500 0.00 0.00 0.00 3.28
3585 15138 6.665695 ACTTTTTCTAGTCCCTACACCAAAA 58.334 36.000 0.00 0.00 0.00 2.44
3586 15139 7.120716 ACTTTTTCTAGTCCCTACACCAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
3587 15140 7.284716 ACTTTTTCTAGTCCCTACACCAAAAAG 59.715 37.037 13.11 13.11 39.45 2.27
3588 15141 5.899631 TTCTAGTCCCTACACCAAAAAGT 57.100 39.130 0.00 0.00 0.00 2.66
3589 15142 5.479124 TCTAGTCCCTACACCAAAAAGTC 57.521 43.478 0.00 0.00 0.00 3.01
3590 15143 3.503800 AGTCCCTACACCAAAAAGTCC 57.496 47.619 0.00 0.00 0.00 3.85
3591 15144 2.107726 AGTCCCTACACCAAAAAGTCCC 59.892 50.000 0.00 0.00 0.00 4.46
3592 15145 2.107726 GTCCCTACACCAAAAAGTCCCT 59.892 50.000 0.00 0.00 0.00 4.20
3593 15146 2.107552 TCCCTACACCAAAAAGTCCCTG 59.892 50.000 0.00 0.00 0.00 4.45
3594 15147 2.514803 CCTACACCAAAAAGTCCCTGG 58.485 52.381 0.00 0.00 36.24 4.45
3595 15148 2.158519 CCTACACCAAAAAGTCCCTGGT 60.159 50.000 0.00 0.00 44.41 4.00
3596 15149 3.073356 CCTACACCAAAAAGTCCCTGGTA 59.927 47.826 0.00 0.00 41.60 3.25
3597 15150 3.673543 ACACCAAAAAGTCCCTGGTAA 57.326 42.857 0.00 0.00 41.60 2.85
3598 15151 3.293337 ACACCAAAAAGTCCCTGGTAAC 58.707 45.455 0.00 0.00 41.60 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.027192 TCACAGCTTCCTCGCCTTTTAT 60.027 45.455 0.00 0.00 0.00 1.40
49 50 3.387091 TACCGGTGCACGCTGGAT 61.387 61.111 19.93 12.54 42.52 3.41
85 86 6.358118 TCATCCGTTGCATGTCTTTTATAC 57.642 37.500 0.00 0.00 0.00 1.47
147 148 4.494690 GCACACACATACATGCACTGTATC 60.495 45.833 14.86 3.90 45.99 2.24
191 1605 3.776969 ACATGCATAGATGGGACCGATAT 59.223 43.478 0.00 0.00 0.00 1.63
201 1615 5.105877 GGATGAATTCCCACATGCATAGATG 60.106 44.000 0.00 0.00 38.75 2.90
213 1627 4.588899 CACTAGTTGTGGATGAATTCCCA 58.411 43.478 2.27 0.84 44.77 4.37
223 1637 0.690762 GGAAGGGCACTAGTTGTGGA 59.309 55.000 6.84 0.00 46.27 4.02
354 1768 1.206132 CCATGTTGTAGTGCCTACGGA 59.794 52.381 7.56 0.00 39.58 4.69
365 1779 8.352201 GCTTAATTGCTAATCATCCATGTTGTA 58.648 33.333 0.00 0.00 0.00 2.41
369 1783 6.964807 TGCTTAATTGCTAATCATCCATGT 57.035 33.333 0.00 0.00 0.00 3.21
376 1790 6.389091 CCACAGTTTGCTTAATTGCTAATCA 58.611 36.000 0.00 0.00 31.37 2.57
412 1826 4.211920 AGTCTCTAGCCACTAGATTGACC 58.788 47.826 15.17 4.33 41.49 4.02
602 2017 4.685924 CATGCTTCTCTTGTTGGTGTTTT 58.314 39.130 0.00 0.00 0.00 2.43
603 2018 3.491447 GCATGCTTCTCTTGTTGGTGTTT 60.491 43.478 11.37 0.00 0.00 2.83
638 2053 1.553248 TGTATTCGTGTGCTAGCCCTT 59.447 47.619 13.29 0.00 0.00 3.95
650 2065 9.740239 ATAACAGATTACATACGTTGTATTCGT 57.260 29.630 17.25 15.82 42.24 3.85
651 2066 9.989394 CATAACAGATTACATACGTTGTATTCG 57.011 33.333 17.25 15.47 42.24 3.34
656 2071 8.942338 ATGACATAACAGATTACATACGTTGT 57.058 30.769 0.00 0.41 42.62 3.32
657 2072 8.207906 CGATGACATAACAGATTACATACGTTG 58.792 37.037 0.00 0.00 0.00 4.10
658 2073 7.096189 GCGATGACATAACAGATTACATACGTT 60.096 37.037 0.00 0.00 0.00 3.99
660 2075 6.582672 AGCGATGACATAACAGATTACATACG 59.417 38.462 0.00 0.00 0.00 3.06
661 2076 7.875316 AGCGATGACATAACAGATTACATAC 57.125 36.000 0.00 0.00 0.00 2.39
673 2108 4.955811 ACCTATCCAAGCGATGACATAA 57.044 40.909 0.00 0.00 31.92 1.90
674 2109 4.558697 CGAACCTATCCAAGCGATGACATA 60.559 45.833 0.00 0.00 31.92 2.29
732 2167 3.682858 CGTTATTTGTCGTGTTGGAGGAT 59.317 43.478 0.00 0.00 0.00 3.24
750 2185 3.749088 CCCATCTTTACAACTGTGCGTTA 59.251 43.478 0.00 0.00 33.63 3.18
850 2364 1.239968 AAGGCGCTTGCAAGAGAAGG 61.240 55.000 31.04 14.24 41.71 3.46
907 2428 6.276568 AGAAATTAATGAGCTGGGGATATCCT 59.723 38.462 21.18 0.46 35.95 3.24
917 2439 8.442632 TGAGTATGGAAGAAATTAATGAGCTG 57.557 34.615 0.00 0.00 0.00 4.24
945 2476 5.009610 GGCGATGGTAATATTGGACACAATT 59.990 40.000 0.00 0.00 44.69 2.32
950 2486 2.224670 GGGGCGATGGTAATATTGGACA 60.225 50.000 0.00 0.00 0.00 4.02
967 3171 0.971959 TGTGCAATGGATTCTGGGGC 60.972 55.000 0.00 0.00 0.00 5.80
1185 3398 1.081174 TCCTTCTCCCCCATCTTCACT 59.919 52.381 0.00 0.00 0.00 3.41
1187 3400 2.359376 TTCCTTCTCCCCCATCTTCA 57.641 50.000 0.00 0.00 0.00 3.02
1206 3419 4.533311 TCCTTTCGGGAGTAAAAGTACCAT 59.467 41.667 0.00 0.00 39.58 3.55
1594 3814 3.675698 GGCTACTGCGAGTAATATTCAGC 59.324 47.826 0.00 0.00 40.82 4.26
1608 3828 4.199310 TCTTTCCATGTATTGGCTACTGC 58.801 43.478 0.00 0.00 46.01 4.40
1704 3925 3.071479 TCTTTTGACCCATACGTTCAGC 58.929 45.455 0.00 0.00 0.00 4.26
1760 3981 5.263599 TCCATGGTTGCATTTACTCATCTT 58.736 37.500 12.58 0.00 0.00 2.40
1763 3984 5.422970 ACATTCCATGGTTGCATTTACTCAT 59.577 36.000 12.58 0.00 33.60 2.90
1818 4039 2.228822 CGGTCAACCTTTCCATCCTTTG 59.771 50.000 0.00 0.00 0.00 2.77
1861 4082 3.428999 GCAACATAGTGACTCCGCTAAGA 60.429 47.826 0.00 0.00 38.70 2.10
1915 4137 6.727394 TCTTGCATAACTTGGGTATTTAGGT 58.273 36.000 0.00 0.00 0.00 3.08
1984 4208 0.108804 AGGTGTGACGCTATTGTCGG 60.109 55.000 0.00 0.00 41.87 4.79
2162 4386 1.968493 TCTAAGTCGACAAAGCCCTGT 59.032 47.619 19.50 0.00 0.00 4.00
2227 4451 2.644418 GAAACAGCGGTGCATGCA 59.356 55.556 18.46 18.46 33.85 3.96
2342 4566 3.161067 CATCATTTGGTGGTGGTGGTTA 58.839 45.455 0.00 0.00 35.20 2.85
2470 4694 0.107508 CATCGATGCCAACCCACTCT 60.108 55.000 13.37 0.00 0.00 3.24
2490 4714 1.283347 ACAGCATCCTCCTGTGACAT 58.717 50.000 0.00 0.00 41.68 3.06
2549 4773 2.320587 GGTCTCGCCAACTGCTGTG 61.321 63.158 0.00 0.00 38.05 3.66
2602 13741 5.296151 TGGGTTATCTGATCATCAGTTCC 57.704 43.478 14.56 11.67 44.58 3.62
2937 14121 9.522804 TCGGTGCAATATAATTTAATGGAAAAC 57.477 29.630 0.00 0.00 0.00 2.43
2995 14548 6.129179 ACCAGGTACTTTCATTGGAATATGG 58.871 40.000 0.00 0.00 34.60 2.74
3119 14672 0.462789 GCCTAGGCGGTGCTTAAGTA 59.537 55.000 20.16 0.00 34.25 2.24
3133 14686 1.068250 GCCTTCGCCTAGTGCCTAG 59.932 63.158 3.06 3.06 36.24 3.02
3171 14724 5.471116 TCACGTACTATATATGCGAGTGGTT 59.529 40.000 0.00 0.00 0.00 3.67
3175 14728 6.738832 ATGTCACGTACTATATATGCGAGT 57.261 37.500 0.00 0.00 0.00 4.18
3179 14732 6.039493 AGGCCTATGTCACGTACTATATATGC 59.961 42.308 1.29 0.00 0.00 3.14
3203 14756 4.502950 GGCCTTATTCTGAGATGAGACCAG 60.503 50.000 0.00 0.00 0.00 4.00
3210 14763 3.853355 ACAGGGCCTTATTCTGAGATG 57.147 47.619 1.32 0.00 33.19 2.90
3211 14764 4.530875 CAAACAGGGCCTTATTCTGAGAT 58.469 43.478 1.32 0.00 33.19 2.75
3212 14765 3.308402 CCAAACAGGGCCTTATTCTGAGA 60.308 47.826 1.32 0.00 33.19 3.27
3213 14766 3.019564 CCAAACAGGGCCTTATTCTGAG 58.980 50.000 1.32 0.00 33.19 3.35
3214 14767 2.378547 ACCAAACAGGGCCTTATTCTGA 59.621 45.455 1.32 0.00 43.89 3.27
3215 14768 2.807676 ACCAAACAGGGCCTTATTCTG 58.192 47.619 1.32 3.13 43.89 3.02
3216 14769 3.181423 TGAACCAAACAGGGCCTTATTCT 60.181 43.478 1.32 0.00 43.89 2.40
3217 14770 3.161866 TGAACCAAACAGGGCCTTATTC 58.838 45.455 1.32 2.30 43.89 1.75
3218 14771 3.252554 TGAACCAAACAGGGCCTTATT 57.747 42.857 1.32 0.00 43.89 1.40
3219 14772 2.990740 TGAACCAAACAGGGCCTTAT 57.009 45.000 1.32 0.00 43.89 1.73
3220 14773 2.990740 ATGAACCAAACAGGGCCTTA 57.009 45.000 1.32 0.00 43.89 2.69
3221 14774 2.990740 TATGAACCAAACAGGGCCTT 57.009 45.000 1.32 0.00 43.89 4.35
3222 14775 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
3223 14776 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
3224 14777 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
3225 14778 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
3226 14779 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
3227 14780 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
3228 14781 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
3251 14804 9.731819 GGACTTTTTAGTTTGGACTAGAAAAAG 57.268 33.333 17.36 17.36 45.76 2.27
3252 14805 8.689061 GGGACTTTTTAGTTTGGACTAGAAAAA 58.311 33.333 0.00 0.00 40.10 1.94
3253 14806 8.057011 AGGGACTTTTTAGTTTGGACTAGAAAA 58.943 33.333 0.00 0.00 40.10 2.29
3254 14807 7.580007 AGGGACTTTTTAGTTTGGACTAGAAA 58.420 34.615 0.00 3.34 39.04 2.52
3255 14808 7.145474 AGGGACTTTTTAGTTTGGACTAGAA 57.855 36.000 0.00 0.00 35.67 2.10
3256 14809 6.758806 AGGGACTTTTTAGTTTGGACTAGA 57.241 37.500 0.00 0.00 35.67 2.43
3257 14810 7.677892 ACTAGGGACTTTTTAGTTTGGACTAG 58.322 38.462 0.00 0.00 38.69 2.57
3258 14811 7.256439 GGACTAGGGACTTTTTAGTTTGGACTA 60.256 40.741 0.00 0.00 41.75 2.59
3259 14812 6.465464 GGACTAGGGACTTTTTAGTTTGGACT 60.465 42.308 0.00 0.00 41.75 3.85
3260 14813 5.704515 GGACTAGGGACTTTTTAGTTTGGAC 59.295 44.000 0.00 0.00 41.75 4.02
3261 14814 5.221986 GGGACTAGGGACTTTTTAGTTTGGA 60.222 44.000 0.00 0.00 41.75 3.53
3262 14815 5.008331 GGGACTAGGGACTTTTTAGTTTGG 58.992 45.833 0.00 0.00 41.75 3.28
3263 14816 5.877491 AGGGACTAGGGACTTTTTAGTTTG 58.123 41.667 0.00 0.00 41.75 2.93
3264 14817 7.637548 TTAGGGACTAGGGACTTTTTAGTTT 57.362 36.000 0.00 0.00 44.25 2.66
3265 14818 7.637548 TTTAGGGACTAGGGACTTTTTAGTT 57.362 36.000 0.00 0.00 44.25 2.24
3266 14819 7.637548 TTTTAGGGACTAGGGACTTTTTAGT 57.362 36.000 0.00 0.00 44.25 2.24
3267 14820 8.162085 ACTTTTTAGGGACTAGGGACTTTTTAG 58.838 37.037 0.00 0.00 44.25 1.85
3268 14821 8.049165 ACTTTTTAGGGACTAGGGACTTTTTA 57.951 34.615 0.00 0.00 44.25 1.52
3269 14822 6.919158 ACTTTTTAGGGACTAGGGACTTTTT 58.081 36.000 0.00 0.00 44.25 1.94
3270 14823 6.466904 GGACTTTTTAGGGACTAGGGACTTTT 60.467 42.308 0.00 0.00 44.25 2.27
3271 14824 5.013913 GGACTTTTTAGGGACTAGGGACTTT 59.986 44.000 0.00 0.00 44.25 2.66
3272 14825 4.535294 GGACTTTTTAGGGACTAGGGACTT 59.465 45.833 0.00 0.00 44.25 3.01
3273 14826 4.102598 GGACTTTTTAGGGACTAGGGACT 58.897 47.826 0.00 0.00 44.25 3.85
3274 14827 3.199508 GGGACTTTTTAGGGACTAGGGAC 59.800 52.174 0.00 0.00 44.25 4.46
3275 14828 3.080153 AGGGACTTTTTAGGGACTAGGGA 59.920 47.826 0.00 0.00 37.71 4.20
3276 14829 3.455177 GAGGGACTTTTTAGGGACTAGGG 59.545 52.174 0.00 0.00 40.88 3.53
3277 14830 3.455177 GGAGGGACTTTTTAGGGACTAGG 59.545 52.174 0.00 0.00 40.88 3.02
3278 14831 3.455177 GGGAGGGACTTTTTAGGGACTAG 59.545 52.174 0.00 0.00 40.88 2.57
3279 14832 3.080153 AGGGAGGGACTTTTTAGGGACTA 59.920 47.826 0.00 0.00 41.55 2.59
3280 14833 2.157833 AGGGAGGGACTTTTTAGGGACT 60.158 50.000 0.00 0.00 41.55 3.85
3281 14834 2.026169 CAGGGAGGGACTTTTTAGGGAC 60.026 54.545 0.00 0.00 41.55 4.46
3282 14835 2.275466 CAGGGAGGGACTTTTTAGGGA 58.725 52.381 0.00 0.00 41.55 4.20
3283 14836 1.993301 ACAGGGAGGGACTTTTTAGGG 59.007 52.381 0.00 0.00 41.55 3.53
3284 14837 3.808834 AACAGGGAGGGACTTTTTAGG 57.191 47.619 0.00 0.00 41.55 2.69
3285 14838 4.470602 ACAAACAGGGAGGGACTTTTTAG 58.529 43.478 0.00 0.00 41.55 1.85
3286 14839 4.529716 ACAAACAGGGAGGGACTTTTTA 57.470 40.909 0.00 0.00 41.55 1.52
3287 14840 3.398318 ACAAACAGGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
3288 14841 3.398318 AACAAACAGGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
3289 14842 3.398318 AAACAAACAGGGAGGGACTTT 57.602 42.857 0.00 0.00 41.55 2.66
3290 14843 3.296854 GAAAACAAACAGGGAGGGACTT 58.703 45.455 0.00 0.00 41.55 3.01
3292 14845 2.661718 TGAAAACAAACAGGGAGGGAC 58.338 47.619 0.00 0.00 0.00 4.46
3293 14846 3.295973 CTTGAAAACAAACAGGGAGGGA 58.704 45.455 0.00 0.00 0.00 4.20
3294 14847 2.365293 CCTTGAAAACAAACAGGGAGGG 59.635 50.000 0.00 0.00 35.69 4.30
3295 14848 3.068165 GTCCTTGAAAACAAACAGGGAGG 59.932 47.826 0.00 0.00 41.58 4.30
3296 14849 3.954258 AGTCCTTGAAAACAAACAGGGAG 59.046 43.478 0.00 0.00 41.58 4.30
3297 14850 3.976015 AGTCCTTGAAAACAAACAGGGA 58.024 40.909 0.00 0.00 39.36 4.20
3298 14851 5.845391 TTAGTCCTTGAAAACAAACAGGG 57.155 39.130 0.00 0.00 35.12 4.45
3299 14852 7.817478 ACTTTTTAGTCCTTGAAAACAAACAGG 59.183 33.333 0.00 0.00 0.00 4.00
3300 14853 8.757164 ACTTTTTAGTCCTTGAAAACAAACAG 57.243 30.769 0.00 0.00 0.00 3.16
3301 14854 8.751302 GACTTTTTAGTCCTTGAAAACAAACA 57.249 30.769 0.00 0.00 32.97 2.83
3315 14868 4.161942 GGAGGGACTAGGGACTTTTTAGTC 59.838 50.000 0.00 3.01 41.55 2.59
3316 14869 4.102598 GGAGGGACTAGGGACTTTTTAGT 58.897 47.826 0.00 0.00 41.55 2.24
3317 14870 3.455177 GGGAGGGACTAGGGACTTTTTAG 59.545 52.174 0.00 0.00 41.55 1.85
3318 14871 3.080153 AGGGAGGGACTAGGGACTTTTTA 59.920 47.826 0.00 0.00 41.55 1.52
3319 14872 2.157833 AGGGAGGGACTAGGGACTTTTT 60.158 50.000 0.00 0.00 41.55 1.94
3320 14873 1.441553 AGGGAGGGACTAGGGACTTTT 59.558 52.381 0.00 0.00 41.55 2.27
3321 14874 1.102938 AGGGAGGGACTAGGGACTTT 58.897 55.000 0.00 0.00 41.55 2.66
3322 14875 1.860906 CTAGGGAGGGACTAGGGACTT 59.139 57.143 0.00 0.00 41.55 3.01
3323 14876 1.012302 TCTAGGGAGGGACTAGGGACT 59.988 57.143 0.00 0.00 41.55 3.85
3324 14877 1.426215 CTCTAGGGAGGGACTAGGGAC 59.574 61.905 0.00 0.00 40.69 4.46
3325 14878 1.835895 CTCTAGGGAGGGACTAGGGA 58.164 60.000 0.00 0.00 40.69 4.20
3335 14888 7.374975 TGGTCATTTAATAACCTCTAGGGAG 57.625 40.000 0.00 0.00 40.27 4.30
3336 14889 7.349859 ACATGGTCATTTAATAACCTCTAGGGA 59.650 37.037 0.00 0.00 40.27 4.20
3337 14890 7.518188 ACATGGTCATTTAATAACCTCTAGGG 58.482 38.462 0.00 0.00 40.27 3.53
3338 14891 8.980481 AACATGGTCATTTAATAACCTCTAGG 57.020 34.615 0.00 0.00 42.17 3.02
3340 14893 9.841295 GGTAACATGGTCATTTAATAACCTCTA 57.159 33.333 0.00 0.00 34.05 2.43
3341 14894 7.778382 GGGTAACATGGTCATTTAATAACCTCT 59.222 37.037 0.00 0.00 39.74 3.69
3342 14895 7.013942 GGGGTAACATGGTCATTTAATAACCTC 59.986 40.741 0.00 0.00 39.74 3.85
3343 14896 6.837048 GGGGTAACATGGTCATTTAATAACCT 59.163 38.462 0.00 0.00 39.74 3.50
3344 14897 6.837048 AGGGGTAACATGGTCATTTAATAACC 59.163 38.462 0.00 0.00 39.74 2.85
3345 14898 7.891498 AGGGGTAACATGGTCATTTAATAAC 57.109 36.000 0.00 0.00 39.74 1.89
3346 14899 8.783903 ACTAGGGGTAACATGGTCATTTAATAA 58.216 33.333 0.00 0.00 39.74 1.40
3347 14900 8.339720 ACTAGGGGTAACATGGTCATTTAATA 57.660 34.615 0.00 0.00 39.74 0.98
3348 14901 7.220890 ACTAGGGGTAACATGGTCATTTAAT 57.779 36.000 0.00 0.00 39.74 1.40
3349 14902 6.645884 ACTAGGGGTAACATGGTCATTTAA 57.354 37.500 0.00 0.00 39.74 1.52
3350 14903 7.941053 ATACTAGGGGTAACATGGTCATTTA 57.059 36.000 0.00 0.00 39.74 1.40
3351 14904 6.841781 ATACTAGGGGTAACATGGTCATTT 57.158 37.500 0.00 0.00 39.74 2.32
3352 14905 6.847567 TGTATACTAGGGGTAACATGGTCATT 59.152 38.462 4.17 0.00 39.74 2.57
3353 14906 6.387127 TGTATACTAGGGGTAACATGGTCAT 58.613 40.000 4.17 0.00 39.74 3.06
3354 14907 5.779636 TGTATACTAGGGGTAACATGGTCA 58.220 41.667 4.17 0.00 39.74 4.02
3355 14908 6.736110 TTGTATACTAGGGGTAACATGGTC 57.264 41.667 4.17 0.00 39.74 4.02
3356 14909 7.513560 TTTTGTATACTAGGGGTAACATGGT 57.486 36.000 4.17 0.00 39.74 3.55
3378 14931 7.148171 CCATGGTGTTGTTTGGTTGTTATTTTT 60.148 33.333 2.57 0.00 0.00 1.94
3379 14932 6.317391 CCATGGTGTTGTTTGGTTGTTATTTT 59.683 34.615 2.57 0.00 0.00 1.82
3380 14933 5.819901 CCATGGTGTTGTTTGGTTGTTATTT 59.180 36.000 2.57 0.00 0.00 1.40
3381 14934 5.363939 CCATGGTGTTGTTTGGTTGTTATT 58.636 37.500 2.57 0.00 0.00 1.40
3382 14935 4.202305 CCCATGGTGTTGTTTGGTTGTTAT 60.202 41.667 11.73 0.00 0.00 1.89
3383 14936 3.133003 CCCATGGTGTTGTTTGGTTGTTA 59.867 43.478 11.73 0.00 0.00 2.41
3384 14937 2.093235 CCCATGGTGTTGTTTGGTTGTT 60.093 45.455 11.73 0.00 0.00 2.83
3385 14938 1.484240 CCCATGGTGTTGTTTGGTTGT 59.516 47.619 11.73 0.00 0.00 3.32
3386 14939 1.202627 CCCCATGGTGTTGTTTGGTTG 60.203 52.381 11.73 0.00 0.00 3.77
3387 14940 1.127343 CCCCATGGTGTTGTTTGGTT 58.873 50.000 11.73 0.00 0.00 3.67
3388 14941 1.406860 GCCCCATGGTGTTGTTTGGT 61.407 55.000 11.73 0.00 0.00 3.67
3389 14942 1.370810 GCCCCATGGTGTTGTTTGG 59.629 57.895 11.73 2.83 0.00 3.28
3390 14943 1.006337 CGCCCCATGGTGTTGTTTG 60.006 57.895 11.73 0.00 37.37 2.93
3391 14944 2.206536 CCGCCCCATGGTGTTGTTT 61.207 57.895 11.73 0.00 40.77 2.83
3392 14945 2.600173 CCGCCCCATGGTGTTGTT 60.600 61.111 11.73 0.00 40.77 2.83
3413 14966 4.864334 CTCCCTGCACCCATCGCC 62.864 72.222 0.00 0.00 0.00 5.54
3414 14967 4.864334 CCTCCCTGCACCCATCGC 62.864 72.222 0.00 0.00 0.00 4.58
3415 14968 4.181010 CCCTCCCTGCACCCATCG 62.181 72.222 0.00 0.00 0.00 3.84
3416 14969 3.813724 CCCCTCCCTGCACCCATC 61.814 72.222 0.00 0.00 0.00 3.51
3420 14973 4.066139 AATGCCCCTCCCTGCACC 62.066 66.667 0.00 0.00 40.88 5.01
3421 14974 2.757099 CAATGCCCCTCCCTGCAC 60.757 66.667 0.00 0.00 40.88 4.57
3422 14975 2.855770 AACAATGCCCCTCCCTGCA 61.856 57.895 0.00 0.00 42.52 4.41
3423 14976 2.037847 AACAATGCCCCTCCCTGC 59.962 61.111 0.00 0.00 0.00 4.85
3424 14977 1.683365 CCAACAATGCCCCTCCCTG 60.683 63.158 0.00 0.00 0.00 4.45
3425 14978 1.442886 TTCCAACAATGCCCCTCCCT 61.443 55.000 0.00 0.00 0.00 4.20
3426 14979 0.544120 TTTCCAACAATGCCCCTCCC 60.544 55.000 0.00 0.00 0.00 4.30
3427 14980 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
3428 14981 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
3429 14982 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
3430 14983 1.001974 GGACTTTTCCAACAATGCCCC 59.998 52.381 0.00 0.00 42.30 5.80
3431 14984 1.970640 AGGACTTTTCCAACAATGCCC 59.029 47.619 0.00 0.00 45.72 5.36
3432 14985 4.864704 TTAGGACTTTTCCAACAATGCC 57.135 40.909 0.00 0.00 45.72 4.40
3433 14986 6.761242 ACTTTTTAGGACTTTTCCAACAATGC 59.239 34.615 0.00 0.00 45.72 3.56
3434 14987 7.438160 GGACTTTTTAGGACTTTTCCAACAATG 59.562 37.037 0.00 0.00 45.72 2.82
3435 14988 7.418597 GGGACTTTTTAGGACTTTTCCAACAAT 60.419 37.037 0.00 0.00 45.72 2.71
3436 14989 6.127281 GGGACTTTTTAGGACTTTTCCAACAA 60.127 38.462 0.00 0.00 45.72 2.83
3437 14990 5.361571 GGGACTTTTTAGGACTTTTCCAACA 59.638 40.000 0.00 0.00 45.72 3.33
3438 14991 5.361571 TGGGACTTTTTAGGACTTTTCCAAC 59.638 40.000 0.00 0.00 45.72 3.77
3439 14992 5.520751 TGGGACTTTTTAGGACTTTTCCAA 58.479 37.500 0.00 0.00 45.72 3.53
3440 14993 5.132043 TGGGACTTTTTAGGACTTTTCCA 57.868 39.130 0.00 0.00 45.72 3.53
3441 14994 6.474140 TTTGGGACTTTTTAGGACTTTTCC 57.526 37.500 0.00 0.00 43.22 3.13
3471 15024 8.432805 ACTAAATGAAGAAAACTCTCAAGGAGA 58.567 33.333 0.00 0.00 44.45 3.71
3472 15025 8.614469 ACTAAATGAAGAAAACTCTCAAGGAG 57.386 34.615 0.00 0.00 46.87 3.69
3473 15026 7.661847 GGACTAAATGAAGAAAACTCTCAAGGA 59.338 37.037 0.00 0.00 0.00 3.36
3474 15027 7.094592 GGGACTAAATGAAGAAAACTCTCAAGG 60.095 40.741 0.00 0.00 0.00 3.61
3475 15028 7.445402 TGGGACTAAATGAAGAAAACTCTCAAG 59.555 37.037 0.00 0.00 0.00 3.02
3476 15029 7.287061 TGGGACTAAATGAAGAAAACTCTCAA 58.713 34.615 0.00 0.00 0.00 3.02
3477 15030 6.837312 TGGGACTAAATGAAGAAAACTCTCA 58.163 36.000 0.00 0.00 0.00 3.27
3478 15031 7.745620 TTGGGACTAAATGAAGAAAACTCTC 57.254 36.000 0.00 0.00 0.00 3.20
3479 15032 8.533569 TTTTGGGACTAAATGAAGAAAACTCT 57.466 30.769 0.00 0.00 0.00 3.24
3480 15033 9.249457 CTTTTTGGGACTAAATGAAGAAAACTC 57.751 33.333 0.00 0.00 0.00 3.01
3481 15034 7.710907 GCTTTTTGGGACTAAATGAAGAAAACT 59.289 33.333 0.00 0.00 0.00 2.66
3482 15035 7.494298 TGCTTTTTGGGACTAAATGAAGAAAAC 59.506 33.333 0.00 0.00 0.00 2.43
3483 15036 7.560368 TGCTTTTTGGGACTAAATGAAGAAAA 58.440 30.769 0.00 0.00 0.00 2.29
3484 15037 7.118496 TGCTTTTTGGGACTAAATGAAGAAA 57.882 32.000 0.00 0.00 0.00 2.52
3485 15038 6.723298 TGCTTTTTGGGACTAAATGAAGAA 57.277 33.333 0.00 0.00 0.00 2.52
3486 15039 6.323739 AGTTGCTTTTTGGGACTAAATGAAGA 59.676 34.615 0.00 0.00 0.00 2.87
3487 15040 6.515832 AGTTGCTTTTTGGGACTAAATGAAG 58.484 36.000 0.00 0.00 0.00 3.02
3488 15041 6.478512 AGTTGCTTTTTGGGACTAAATGAA 57.521 33.333 0.00 0.00 0.00 2.57
3489 15042 6.478512 AAGTTGCTTTTTGGGACTAAATGA 57.521 33.333 0.00 0.00 0.00 2.57
3490 15043 7.552458 AAAAGTTGCTTTTTGGGACTAAATG 57.448 32.000 1.46 0.00 40.23 2.32
3491 15044 8.482943 ACTAAAAGTTGCTTTTTGGGACTAAAT 58.517 29.630 11.39 0.00 40.23 1.40
3492 15045 7.842982 ACTAAAAGTTGCTTTTTGGGACTAAA 58.157 30.769 11.39 0.00 40.23 1.85
3493 15046 7.412853 ACTAAAAGTTGCTTTTTGGGACTAA 57.587 32.000 11.39 0.00 40.23 2.24
3494 15047 6.040054 GGACTAAAAGTTGCTTTTTGGGACTA 59.960 38.462 11.39 0.00 40.23 2.59
3495 15048 5.163447 GGACTAAAAGTTGCTTTTTGGGACT 60.163 40.000 11.39 0.00 40.23 3.85
3496 15049 5.047847 GGACTAAAAGTTGCTTTTTGGGAC 58.952 41.667 11.39 6.71 40.23 4.46
3497 15050 4.100344 GGGACTAAAAGTTGCTTTTTGGGA 59.900 41.667 11.39 0.00 40.23 4.37
3498 15051 4.100963 AGGGACTAAAAGTTGCTTTTTGGG 59.899 41.667 11.39 6.28 40.23 4.12
3499 15052 5.276461 AGGGACTAAAAGTTGCTTTTTGG 57.724 39.130 11.39 8.20 40.23 3.28
3500 15053 7.039313 ACTAGGGACTAAAAGTTGCTTTTTG 57.961 36.000 11.39 11.68 42.17 2.44
3501 15054 7.997223 ACTACTAGGGACTAAAAGTTGCTTTTT 59.003 33.333 11.39 0.00 42.17 1.94
3502 15055 7.515586 ACTACTAGGGACTAAAAGTTGCTTTT 58.484 34.615 10.99 10.99 42.17 2.27
3503 15056 7.075851 ACTACTAGGGACTAAAAGTTGCTTT 57.924 36.000 0.00 0.00 42.17 3.51
3504 15057 6.295745 GGACTACTAGGGACTAAAAGTTGCTT 60.296 42.308 0.00 0.00 42.17 3.91
3505 15058 5.187381 GGACTACTAGGGACTAAAAGTTGCT 59.813 44.000 0.00 0.00 42.17 3.91
3506 15059 5.417811 GGACTACTAGGGACTAAAAGTTGC 58.582 45.833 0.00 0.00 42.17 4.17
3507 15060 5.720520 AGGGACTACTAGGGACTAAAAGTTG 59.279 44.000 0.00 0.00 37.45 3.16
3508 15061 5.913277 AGGGACTACTAGGGACTAAAAGTT 58.087 41.667 0.00 0.00 37.45 2.66
3509 15062 5.016031 TGAGGGACTACTAGGGACTAAAAGT 59.984 44.000 0.00 0.00 39.34 2.66
3510 15063 5.516984 TGAGGGACTACTAGGGACTAAAAG 58.483 45.833 0.00 0.00 39.34 2.27
3511 15064 5.541258 TGAGGGACTACTAGGGACTAAAA 57.459 43.478 0.00 0.00 39.34 1.52
3512 15065 5.043582 ACATGAGGGACTACTAGGGACTAAA 60.044 44.000 0.00 0.00 39.34 1.85
3513 15066 4.481280 ACATGAGGGACTACTAGGGACTAA 59.519 45.833 0.00 0.00 39.34 2.24
3514 15067 4.052922 ACATGAGGGACTACTAGGGACTA 58.947 47.826 0.00 0.00 41.55 2.59
3515 15068 2.860041 ACATGAGGGACTACTAGGGACT 59.140 50.000 0.00 0.00 41.55 3.85
3516 15069 3.315880 ACATGAGGGACTACTAGGGAC 57.684 52.381 0.00 0.00 41.55 4.46
3517 15070 4.030913 CAAACATGAGGGACTACTAGGGA 58.969 47.826 0.00 0.00 41.55 4.20
3518 15071 3.134804 CCAAACATGAGGGACTACTAGGG 59.865 52.174 0.00 0.00 41.55 3.53
3519 15072 3.775316 ACCAAACATGAGGGACTACTAGG 59.225 47.826 0.00 0.00 41.55 3.02
3520 15073 5.422214 AACCAAACATGAGGGACTACTAG 57.578 43.478 0.00 0.00 41.55 2.57
3521 15074 6.938698 TTAACCAAACATGAGGGACTACTA 57.061 37.500 0.00 0.00 41.55 1.82
3522 15075 5.836024 TTAACCAAACATGAGGGACTACT 57.164 39.130 0.00 0.00 41.55 2.57
3523 15076 6.887626 TTTTAACCAAACATGAGGGACTAC 57.112 37.500 0.00 0.00 41.55 2.73
3524 15077 7.064229 ACTTTTTAACCAAACATGAGGGACTA 58.936 34.615 0.00 0.00 41.55 2.59
3526 15079 6.040504 AGACTTTTTAACCAAACATGAGGGAC 59.959 38.462 0.00 0.00 0.00 4.46
3527 15080 6.133356 AGACTTTTTAACCAAACATGAGGGA 58.867 36.000 0.00 0.00 0.00 4.20
3528 15081 6.265422 AGAGACTTTTTAACCAAACATGAGGG 59.735 38.462 0.00 0.00 0.00 4.30
3529 15082 7.277174 AGAGACTTTTTAACCAAACATGAGG 57.723 36.000 0.00 0.35 0.00 3.86
3530 15083 9.884465 CTTAGAGACTTTTTAACCAAACATGAG 57.116 33.333 0.00 0.00 0.00 2.90
3531 15084 9.621629 TCTTAGAGACTTTTTAACCAAACATGA 57.378 29.630 0.00 0.00 0.00 3.07
3532 15085 9.884465 CTCTTAGAGACTTTTTAACCAAACATG 57.116 33.333 2.53 0.00 0.00 3.21
3533 15086 9.067986 CCTCTTAGAGACTTTTTAACCAAACAT 57.932 33.333 11.32 0.00 0.00 2.71
3534 15087 7.501225 CCCTCTTAGAGACTTTTTAACCAAACA 59.499 37.037 11.32 0.00 0.00 2.83
3535 15088 7.718314 TCCCTCTTAGAGACTTTTTAACCAAAC 59.282 37.037 11.32 0.00 0.00 2.93
3536 15089 7.718314 GTCCCTCTTAGAGACTTTTTAACCAAA 59.282 37.037 11.32 0.00 0.00 3.28
3537 15090 7.072076 AGTCCCTCTTAGAGACTTTTTAACCAA 59.928 37.037 11.32 0.00 37.60 3.67
3538 15091 6.557633 AGTCCCTCTTAGAGACTTTTTAACCA 59.442 38.462 11.32 0.00 37.60 3.67
3539 15092 7.006865 AGTCCCTCTTAGAGACTTTTTAACC 57.993 40.000 11.32 0.00 37.60 2.85
3547 15100 7.243091 ACTAGAAAAAGTCCCTCTTAGAGACT 58.757 38.462 11.32 4.57 42.58 3.24
3548 15101 7.470935 ACTAGAAAAAGTCCCTCTTAGAGAC 57.529 40.000 11.32 2.08 35.02 3.36
3549 15102 7.706100 GACTAGAAAAAGTCCCTCTTAGAGA 57.294 40.000 11.32 0.00 40.06 3.10
3560 15113 5.479124 TGGTGTAGGGACTAGAAAAAGTC 57.521 43.478 0.00 0.00 44.14 3.01
3561 15114 5.899631 TTGGTGTAGGGACTAGAAAAAGT 57.100 39.130 0.00 0.00 44.14 2.66
3562 15115 7.284716 ACTTTTTGGTGTAGGGACTAGAAAAAG 59.715 37.037 0.00 0.00 44.14 2.27
3563 15116 7.120716 ACTTTTTGGTGTAGGGACTAGAAAAA 58.879 34.615 0.00 0.00 44.14 1.94
3564 15117 6.665695 ACTTTTTGGTGTAGGGACTAGAAAA 58.334 36.000 0.00 0.00 44.14 2.29
3565 15118 6.256643 ACTTTTTGGTGTAGGGACTAGAAA 57.743 37.500 0.00 0.00 44.14 2.52
3566 15119 5.221783 GGACTTTTTGGTGTAGGGACTAGAA 60.222 44.000 0.00 0.00 44.14 2.10
3567 15120 4.285260 GGACTTTTTGGTGTAGGGACTAGA 59.715 45.833 0.00 0.00 44.14 2.43
3568 15121 4.565028 GGGACTTTTTGGTGTAGGGACTAG 60.565 50.000 0.00 0.00 44.14 2.57
3569 15122 3.328637 GGGACTTTTTGGTGTAGGGACTA 59.671 47.826 0.00 0.00 41.75 2.59
3570 15123 2.107726 GGGACTTTTTGGTGTAGGGACT 59.892 50.000 0.00 0.00 46.37 3.85
3571 15124 2.107726 AGGGACTTTTTGGTGTAGGGAC 59.892 50.000 0.00 0.00 27.25 4.46
3572 15125 2.107552 CAGGGACTTTTTGGTGTAGGGA 59.892 50.000 0.00 0.00 34.60 4.20
3573 15126 2.514803 CAGGGACTTTTTGGTGTAGGG 58.485 52.381 0.00 0.00 34.60 3.53
3574 15127 2.158519 ACCAGGGACTTTTTGGTGTAGG 60.159 50.000 0.00 0.00 43.32 3.18
3575 15128 3.223674 ACCAGGGACTTTTTGGTGTAG 57.776 47.619 0.00 0.00 43.32 2.74
3576 15129 4.079901 TGTTACCAGGGACTTTTTGGTGTA 60.080 41.667 5.69 0.00 44.56 2.90
3577 15130 3.293337 GTTACCAGGGACTTTTTGGTGT 58.707 45.455 5.69 0.00 44.56 4.16
3578 15131 3.292460 TGTTACCAGGGACTTTTTGGTG 58.708 45.455 5.69 0.00 44.56 4.17
3579 15132 3.673543 TGTTACCAGGGACTTTTTGGT 57.326 42.857 0.69 0.69 46.44 3.67
3580 15133 4.160626 TGTTTGTTACCAGGGACTTTTTGG 59.839 41.667 0.00 0.00 34.60 3.28
3581 15134 5.106442 GTGTTTGTTACCAGGGACTTTTTG 58.894 41.667 0.00 0.00 34.60 2.44
3582 15135 4.160814 GGTGTTTGTTACCAGGGACTTTTT 59.839 41.667 0.00 0.00 34.60 1.94
3583 15136 3.702548 GGTGTTTGTTACCAGGGACTTTT 59.297 43.478 0.00 0.00 34.60 2.27
3584 15137 3.293337 GGTGTTTGTTACCAGGGACTTT 58.707 45.455 0.00 0.00 34.60 2.66
3585 15138 2.423803 GGGTGTTTGTTACCAGGGACTT 60.424 50.000 0.00 0.00 40.03 3.01
3586 15139 1.144298 GGGTGTTTGTTACCAGGGACT 59.856 52.381 0.00 0.00 40.03 3.85
3587 15140 1.612676 GGGTGTTTGTTACCAGGGAC 58.387 55.000 0.00 0.00 40.03 4.46
3588 15141 0.479378 GGGGTGTTTGTTACCAGGGA 59.521 55.000 0.00 0.00 40.03 4.20
3589 15142 0.541063 GGGGGTGTTTGTTACCAGGG 60.541 60.000 0.00 0.00 40.03 4.45
3590 15143 0.481128 AGGGGGTGTTTGTTACCAGG 59.519 55.000 0.00 0.00 40.03 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.