Multiple sequence alignment - TraesCS7B01G486400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G486400 chr7B 100.000 2486 0 0 1 2486 742435800 742438285 0.000000e+00 4591.0
1 TraesCS7B01G486400 chr7B 88.600 1500 137 17 9 1495 742409449 742410927 0.000000e+00 1792.0
2 TraesCS7B01G486400 chr7B 85.748 1263 131 11 433 1683 742404786 742406011 0.000000e+00 1290.0
3 TraesCS7B01G486400 chr7B 91.363 521 33 4 1180 1690 742445289 742445807 0.000000e+00 702.0
4 TraesCS7B01G486400 chr7B 90.338 207 20 0 1370 1576 742385492 742385698 3.150000e-69 272.0
5 TraesCS7B01G486400 chr7B 94.545 55 3 0 404 458 742403043 742403097 4.410000e-13 86.1
6 TraesCS7B01G486400 chr7D 94.356 1701 83 6 1 1690 634186281 634184583 0.000000e+00 2597.0
7 TraesCS7B01G486400 chr7D 87.003 1508 158 21 2 1495 634088475 634089958 0.000000e+00 1664.0
8 TraesCS7B01G486400 chr7D 91.912 952 72 4 743 1690 634385363 634384413 0.000000e+00 1327.0
9 TraesCS7B01G486400 chr7A 88.363 1478 151 12 35 1498 732157496 732156026 0.000000e+00 1757.0
10 TraesCS7B01G486400 chr7A 93.220 885 51 4 808 1690 732048705 732049582 0.000000e+00 1293.0
11 TraesCS7B01G486400 chr7A 83.117 77 12 1 1762 1837 365624843 365624919 4.440000e-08 69.4
12 TraesCS7B01G486400 chr7A 82.051 78 14 0 1768 1845 482556646 482556569 1.600000e-07 67.6
13 TraesCS7B01G486400 chr7A 82.051 78 13 1 1768 1845 482567907 482567831 5.740000e-07 65.8
14 TraesCS7B01G486400 chr6B 79.318 1436 253 25 27 1452 171030382 171031783 0.000000e+00 966.0
15 TraesCS7B01G486400 chr6B 77.736 1343 258 27 152 1485 171206368 171207678 0.000000e+00 785.0
16 TraesCS7B01G486400 chr6A 78.075 1309 257 24 152 1452 107270916 107272202 0.000000e+00 800.0
17 TraesCS7B01G486400 chr6A 88.333 60 7 0 1768 1827 298242342 298242401 3.430000e-09 73.1
18 TraesCS7B01G486400 chr4D 96.491 57 2 0 1770 1826 506512240 506512296 7.320000e-16 95.3
19 TraesCS7B01G486400 chr6D 100.000 29 0 0 1770 1798 288437520 288437548 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G486400 chr7B 742435800 742438285 2485 False 4591.000000 4591 100.000 1 2486 1 chr7B.!!$F2 2485
1 TraesCS7B01G486400 chr7B 742403043 742410927 7884 False 1056.033333 1792 89.631 9 1683 3 chr7B.!!$F4 1674
2 TraesCS7B01G486400 chr7B 742445289 742445807 518 False 702.000000 702 91.363 1180 1690 1 chr7B.!!$F3 510
3 TraesCS7B01G486400 chr7D 634184583 634186281 1698 True 2597.000000 2597 94.356 1 1690 1 chr7D.!!$R1 1689
4 TraesCS7B01G486400 chr7D 634088475 634089958 1483 False 1664.000000 1664 87.003 2 1495 1 chr7D.!!$F1 1493
5 TraesCS7B01G486400 chr7D 634384413 634385363 950 True 1327.000000 1327 91.912 743 1690 1 chr7D.!!$R2 947
6 TraesCS7B01G486400 chr7A 732156026 732157496 1470 True 1757.000000 1757 88.363 35 1498 1 chr7A.!!$R3 1463
7 TraesCS7B01G486400 chr7A 732048705 732049582 877 False 1293.000000 1293 93.220 808 1690 1 chr7A.!!$F2 882
8 TraesCS7B01G486400 chr6B 171030382 171031783 1401 False 966.000000 966 79.318 27 1452 1 chr6B.!!$F1 1425
9 TraesCS7B01G486400 chr6B 171206368 171207678 1310 False 785.000000 785 77.736 152 1485 1 chr6B.!!$F2 1333
10 TraesCS7B01G486400 chr6A 107270916 107272202 1286 False 800.000000 800 78.075 152 1452 1 chr6A.!!$F1 1300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 6456 1.48631 AGATAGGGAGCATGCGAAACA 59.514 47.619 13.01 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 8432 0.110678 TGATCTCCTAGCCGTCCGAT 59.889 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 6431 2.790433 TGTTAACTGGAAGCATCCCAC 58.210 47.619 5.34 0.00 45.95 4.61
56 6456 1.486310 AGATAGGGAGCATGCGAAACA 59.514 47.619 13.01 0.00 0.00 2.83
104 6504 2.290641 CACCTTACTGGAATTATGCCGC 59.709 50.000 0.00 0.00 39.71 6.53
145 6545 5.762045 ACATCTTTGAAATTCCTTGACGTG 58.238 37.500 0.00 0.00 0.00 4.49
621 7022 1.738030 CGGTGTAATTCCTCCGTGGAC 60.738 57.143 3.60 0.00 46.14 4.02
663 7064 3.555966 TGAGGATTCTCATGCTACGAGA 58.444 45.455 0.00 0.00 44.39 4.04
682 7083 4.434330 CGAGAAAACATGTTCTACGGAAGC 60.434 45.833 12.39 0.00 37.98 3.86
717 7118 1.611519 CTATCACTCCTCCCTCGTCC 58.388 60.000 0.00 0.00 0.00 4.79
781 7182 6.488683 CCATACCAGAAAGTTTGGACAACTTA 59.511 38.462 0.43 0.00 40.22 2.24
839 7240 8.212495 CAGTTGTAACAAACGTCATAGTACTTC 58.788 37.037 0.00 0.00 35.13 3.01
1185 7587 5.032846 TCCAACAACCTTCTATCTGGAGAT 58.967 41.667 0.00 0.00 38.51 2.75
1554 7982 8.257306 AGCTCTTTGTTTTCTTTCACCAATAAA 58.743 29.630 0.00 0.00 0.00 1.40
1685 8115 6.330250 AGCTTTCCTAGTACCATTCCATATGT 59.670 38.462 1.24 0.00 0.00 2.29
1690 8120 8.974060 TCCTAGTACCATTCCATATGTTTTTC 57.026 34.615 1.24 0.00 0.00 2.29
1691 8121 8.778059 TCCTAGTACCATTCCATATGTTTTTCT 58.222 33.333 1.24 0.00 0.00 2.52
1692 8122 9.408648 CCTAGTACCATTCCATATGTTTTTCTT 57.591 33.333 1.24 0.00 0.00 2.52
1694 8124 8.877864 AGTACCATTCCATATGTTTTTCTTCA 57.122 30.769 1.24 0.00 0.00 3.02
1695 8125 9.479549 AGTACCATTCCATATGTTTTTCTTCAT 57.520 29.630 1.24 0.00 0.00 2.57
1696 8126 9.736023 GTACCATTCCATATGTTTTTCTTCATC 57.264 33.333 1.24 0.00 0.00 2.92
1697 8127 8.599624 ACCATTCCATATGTTTTTCTTCATCT 57.400 30.769 1.24 0.00 0.00 2.90
1698 8128 9.039165 ACCATTCCATATGTTTTTCTTCATCTT 57.961 29.630 1.24 0.00 0.00 2.40
1699 8129 9.525409 CCATTCCATATGTTTTTCTTCATCTTC 57.475 33.333 1.24 0.00 0.00 2.87
1700 8130 9.525409 CATTCCATATGTTTTTCTTCATCTTCC 57.475 33.333 1.24 0.00 0.00 3.46
1701 8131 7.645058 TCCATATGTTTTTCTTCATCTTCCC 57.355 36.000 1.24 0.00 0.00 3.97
1702 8132 6.607198 TCCATATGTTTTTCTTCATCTTCCCC 59.393 38.462 1.24 0.00 0.00 4.81
1703 8133 6.608808 CCATATGTTTTTCTTCATCTTCCCCT 59.391 38.462 1.24 0.00 0.00 4.79
1704 8134 5.990120 ATGTTTTTCTTCATCTTCCCCTG 57.010 39.130 0.00 0.00 0.00 4.45
1705 8135 4.803452 TGTTTTTCTTCATCTTCCCCTGT 58.197 39.130 0.00 0.00 0.00 4.00
1706 8136 5.208121 TGTTTTTCTTCATCTTCCCCTGTT 58.792 37.500 0.00 0.00 0.00 3.16
1707 8137 5.660864 TGTTTTTCTTCATCTTCCCCTGTTT 59.339 36.000 0.00 0.00 0.00 2.83
1708 8138 6.156083 TGTTTTTCTTCATCTTCCCCTGTTTT 59.844 34.615 0.00 0.00 0.00 2.43
1709 8139 6.806668 TTTTCTTCATCTTCCCCTGTTTTT 57.193 33.333 0.00 0.00 0.00 1.94
1727 8157 4.320608 TTTTTGAATCCTGTGAAGCCAC 57.679 40.909 0.00 0.00 43.46 5.01
1736 8166 2.429927 GTGAAGCCACAAAAGCCCT 58.570 52.632 0.00 0.00 42.72 5.19
1737 8167 0.752658 GTGAAGCCACAAAAGCCCTT 59.247 50.000 0.00 0.00 42.72 3.95
1738 8168 1.960689 GTGAAGCCACAAAAGCCCTTA 59.039 47.619 0.00 0.00 42.72 2.69
1739 8169 2.364002 GTGAAGCCACAAAAGCCCTTAA 59.636 45.455 0.00 0.00 42.72 1.85
1740 8170 2.627699 TGAAGCCACAAAAGCCCTTAAG 59.372 45.455 0.00 0.00 0.00 1.85
1741 8171 0.969149 AGCCACAAAAGCCCTTAAGC 59.031 50.000 0.00 0.00 0.00 3.09
1742 8172 0.678950 GCCACAAAAGCCCTTAAGCA 59.321 50.000 0.00 0.00 34.23 3.91
1743 8173 1.605457 GCCACAAAAGCCCTTAAGCAC 60.605 52.381 0.00 0.00 34.23 4.40
1744 8174 1.686052 CCACAAAAGCCCTTAAGCACA 59.314 47.619 0.00 0.00 34.23 4.57
1745 8175 2.102252 CCACAAAAGCCCTTAAGCACAA 59.898 45.455 0.00 0.00 34.23 3.33
1746 8176 3.431486 CCACAAAAGCCCTTAAGCACAAA 60.431 43.478 0.00 0.00 34.23 2.83
1747 8177 3.803778 CACAAAAGCCCTTAAGCACAAAG 59.196 43.478 0.00 0.00 34.23 2.77
1748 8178 3.450817 ACAAAAGCCCTTAAGCACAAAGT 59.549 39.130 0.00 0.00 34.23 2.66
1749 8179 4.647399 ACAAAAGCCCTTAAGCACAAAGTA 59.353 37.500 0.00 0.00 34.23 2.24
1750 8180 4.848562 AAAGCCCTTAAGCACAAAGTAC 57.151 40.909 0.00 0.00 34.23 2.73
1751 8181 3.790089 AGCCCTTAAGCACAAAGTACT 57.210 42.857 0.00 0.00 34.23 2.73
1752 8182 4.903045 AGCCCTTAAGCACAAAGTACTA 57.097 40.909 0.00 0.00 34.23 1.82
1753 8183 4.576879 AGCCCTTAAGCACAAAGTACTAC 58.423 43.478 0.00 0.00 34.23 2.73
1754 8184 4.286291 AGCCCTTAAGCACAAAGTACTACT 59.714 41.667 0.00 0.00 34.23 2.57
1755 8185 5.482878 AGCCCTTAAGCACAAAGTACTACTA 59.517 40.000 0.00 0.00 34.23 1.82
1756 8186 6.156429 AGCCCTTAAGCACAAAGTACTACTAT 59.844 38.462 0.00 0.00 34.23 2.12
1757 8187 7.343833 AGCCCTTAAGCACAAAGTACTACTATA 59.656 37.037 0.00 0.00 34.23 1.31
1758 8188 8.148999 GCCCTTAAGCACAAAGTACTACTATAT 58.851 37.037 0.00 0.00 0.00 0.86
1759 8189 9.477484 CCCTTAAGCACAAAGTACTACTATATG 57.523 37.037 0.00 0.00 0.00 1.78
1782 8212 2.106187 AAAACCCAAACCCTAACCCC 57.894 50.000 0.00 0.00 0.00 4.95
1783 8213 1.247260 AAACCCAAACCCTAACCCCT 58.753 50.000 0.00 0.00 0.00 4.79
1784 8214 0.485543 AACCCAAACCCTAACCCCTG 59.514 55.000 0.00 0.00 0.00 4.45
1785 8215 1.304962 CCCAAACCCTAACCCCTGC 60.305 63.158 0.00 0.00 0.00 4.85
1786 8216 1.304962 CCAAACCCTAACCCCTGCC 60.305 63.158 0.00 0.00 0.00 4.85
1787 8217 1.774300 CAAACCCTAACCCCTGCCT 59.226 57.895 0.00 0.00 0.00 4.75
1788 8218 0.996583 CAAACCCTAACCCCTGCCTA 59.003 55.000 0.00 0.00 0.00 3.93
1789 8219 1.569072 CAAACCCTAACCCCTGCCTAT 59.431 52.381 0.00 0.00 0.00 2.57
1790 8220 1.995868 AACCCTAACCCCTGCCTATT 58.004 50.000 0.00 0.00 0.00 1.73
1791 8221 1.995868 ACCCTAACCCCTGCCTATTT 58.004 50.000 0.00 0.00 0.00 1.40
1792 8222 3.154546 ACCCTAACCCCTGCCTATTTA 57.845 47.619 0.00 0.00 0.00 1.40
1793 8223 3.476953 ACCCTAACCCCTGCCTATTTAA 58.523 45.455 0.00 0.00 0.00 1.52
1794 8224 3.462205 ACCCTAACCCCTGCCTATTTAAG 59.538 47.826 0.00 0.00 0.00 1.85
1795 8225 3.487372 CCTAACCCCTGCCTATTTAAGC 58.513 50.000 0.00 0.00 0.00 3.09
1796 8226 3.117663 CCTAACCCCTGCCTATTTAAGCA 60.118 47.826 0.00 0.00 37.46 3.91
1803 8233 3.199880 TGCCTATTTAAGCAGCCTCTC 57.800 47.619 0.00 0.00 33.08 3.20
1804 8234 2.158755 TGCCTATTTAAGCAGCCTCTCC 60.159 50.000 0.00 0.00 33.08 3.71
1805 8235 2.158755 GCCTATTTAAGCAGCCTCTCCA 60.159 50.000 0.00 0.00 0.00 3.86
1806 8236 3.497584 GCCTATTTAAGCAGCCTCTCCAT 60.498 47.826 0.00 0.00 0.00 3.41
1807 8237 4.070716 CCTATTTAAGCAGCCTCTCCATG 58.929 47.826 0.00 0.00 0.00 3.66
1808 8238 3.659183 ATTTAAGCAGCCTCTCCATGT 57.341 42.857 0.00 0.00 0.00 3.21
1809 8239 2.698855 TTAAGCAGCCTCTCCATGTC 57.301 50.000 0.00 0.00 0.00 3.06
1810 8240 1.571955 TAAGCAGCCTCTCCATGTCA 58.428 50.000 0.00 0.00 0.00 3.58
1811 8241 0.917533 AAGCAGCCTCTCCATGTCAT 59.082 50.000 0.00 0.00 0.00 3.06
1812 8242 0.917533 AGCAGCCTCTCCATGTCATT 59.082 50.000 0.00 0.00 0.00 2.57
1813 8243 1.284198 AGCAGCCTCTCCATGTCATTT 59.716 47.619 0.00 0.00 0.00 2.32
1814 8244 2.097825 GCAGCCTCTCCATGTCATTTT 58.902 47.619 0.00 0.00 0.00 1.82
1815 8245 2.494870 GCAGCCTCTCCATGTCATTTTT 59.505 45.455 0.00 0.00 0.00 1.94
1816 8246 3.675228 GCAGCCTCTCCATGTCATTTTTG 60.675 47.826 0.00 0.00 0.00 2.44
1817 8247 3.094572 AGCCTCTCCATGTCATTTTTGG 58.905 45.455 0.00 0.00 0.00 3.28
1818 8248 3.091545 GCCTCTCCATGTCATTTTTGGA 58.908 45.455 0.00 0.00 37.20 3.53
1819 8249 3.511146 GCCTCTCCATGTCATTTTTGGAA 59.489 43.478 0.00 0.00 38.99 3.53
1820 8250 4.021192 GCCTCTCCATGTCATTTTTGGAAA 60.021 41.667 0.00 0.00 38.99 3.13
1821 8251 5.473039 CCTCTCCATGTCATTTTTGGAAAC 58.527 41.667 0.00 0.00 38.99 2.78
1822 8252 5.467035 TCTCCATGTCATTTTTGGAAACC 57.533 39.130 0.00 0.00 38.99 3.27
1823 8253 5.147032 TCTCCATGTCATTTTTGGAAACCT 58.853 37.500 0.00 0.00 38.99 3.50
1824 8254 6.310941 TCTCCATGTCATTTTTGGAAACCTA 58.689 36.000 0.00 0.00 38.99 3.08
1825 8255 6.434028 TCTCCATGTCATTTTTGGAAACCTAG 59.566 38.462 0.00 0.00 38.99 3.02
1826 8256 5.047377 TCCATGTCATTTTTGGAAACCTAGC 60.047 40.000 0.00 0.00 36.62 3.42
1827 8257 5.047092 CCATGTCATTTTTGGAAACCTAGCT 60.047 40.000 0.00 0.00 31.94 3.32
1828 8258 6.458210 CATGTCATTTTTGGAAACCTAGCTT 58.542 36.000 0.00 0.00 0.00 3.74
1829 8259 6.084326 TGTCATTTTTGGAAACCTAGCTTC 57.916 37.500 0.00 0.00 0.00 3.86
1830 8260 5.010617 TGTCATTTTTGGAAACCTAGCTTCC 59.989 40.000 12.71 12.71 42.41 3.46
1831 8261 4.526650 TCATTTTTGGAAACCTAGCTTCCC 59.473 41.667 15.60 0.00 41.54 3.97
1832 8262 3.895704 TTTTGGAAACCTAGCTTCCCT 57.104 42.857 15.60 0.00 41.54 4.20
1833 8263 5.327737 TTTTTGGAAACCTAGCTTCCCTA 57.672 39.130 15.60 5.14 41.54 3.53
1834 8264 3.994931 TTGGAAACCTAGCTTCCCTAC 57.005 47.619 15.60 0.00 41.54 3.18
1835 8265 2.193993 TGGAAACCTAGCTTCCCTACC 58.806 52.381 15.60 0.00 41.54 3.18
1836 8266 1.489649 GGAAACCTAGCTTCCCTACCC 59.510 57.143 9.65 0.00 37.03 3.69
1837 8267 1.489649 GAAACCTAGCTTCCCTACCCC 59.510 57.143 0.00 0.00 0.00 4.95
1838 8268 0.723289 AACCTAGCTTCCCTACCCCT 59.277 55.000 0.00 0.00 0.00 4.79
1839 8269 0.723289 ACCTAGCTTCCCTACCCCTT 59.277 55.000 0.00 0.00 0.00 3.95
1840 8270 1.344189 ACCTAGCTTCCCTACCCCTTC 60.344 57.143 0.00 0.00 0.00 3.46
1841 8271 1.062044 CCTAGCTTCCCTACCCCTTCT 60.062 57.143 0.00 0.00 0.00 2.85
1842 8272 2.629909 CCTAGCTTCCCTACCCCTTCTT 60.630 54.545 0.00 0.00 0.00 2.52
1843 8273 1.585895 AGCTTCCCTACCCCTTCTTC 58.414 55.000 0.00 0.00 0.00 2.87
1844 8274 1.081343 AGCTTCCCTACCCCTTCTTCT 59.919 52.381 0.00 0.00 0.00 2.85
1845 8275 1.916874 GCTTCCCTACCCCTTCTTCTT 59.083 52.381 0.00 0.00 0.00 2.52
1846 8276 2.092861 GCTTCCCTACCCCTTCTTCTTC 60.093 54.545 0.00 0.00 0.00 2.87
1847 8277 2.265526 TCCCTACCCCTTCTTCTTCC 57.734 55.000 0.00 0.00 0.00 3.46
1848 8278 1.214217 CCCTACCCCTTCTTCTTCCC 58.786 60.000 0.00 0.00 0.00 3.97
1849 8279 0.831307 CCTACCCCTTCTTCTTCCCG 59.169 60.000 0.00 0.00 0.00 5.14
1850 8280 0.178301 CTACCCCTTCTTCTTCCCGC 59.822 60.000 0.00 0.00 0.00 6.13
1851 8281 0.545787 TACCCCTTCTTCTTCCCGCA 60.546 55.000 0.00 0.00 0.00 5.69
1852 8282 1.377333 CCCCTTCTTCTTCCCGCAC 60.377 63.158 0.00 0.00 0.00 5.34
1853 8283 1.374947 CCCTTCTTCTTCCCGCACA 59.625 57.895 0.00 0.00 0.00 4.57
1854 8284 0.955919 CCCTTCTTCTTCCCGCACAC 60.956 60.000 0.00 0.00 0.00 3.82
1855 8285 1.291877 CCTTCTTCTTCCCGCACACG 61.292 60.000 0.00 0.00 39.67 4.49
1856 8286 1.901650 CTTCTTCTTCCCGCACACGC 61.902 60.000 0.00 0.00 38.22 5.34
1857 8287 3.423154 CTTCTTCCCGCACACGCC 61.423 66.667 0.00 0.00 38.22 5.68
1874 8304 4.351054 CGCCAGCCCCCTCAGTTT 62.351 66.667 0.00 0.00 0.00 2.66
1875 8305 2.361737 GCCAGCCCCCTCAGTTTC 60.362 66.667 0.00 0.00 0.00 2.78
1876 8306 2.356667 CCAGCCCCCTCAGTTTCC 59.643 66.667 0.00 0.00 0.00 3.13
1877 8307 2.045926 CAGCCCCCTCAGTTTCCG 60.046 66.667 0.00 0.00 0.00 4.30
1878 8308 4.035102 AGCCCCCTCAGTTTCCGC 62.035 66.667 0.00 0.00 0.00 5.54
1880 8310 4.016706 CCCCCTCAGTTTCCGCGT 62.017 66.667 4.92 0.00 0.00 6.01
1881 8311 2.434359 CCCCTCAGTTTCCGCGTC 60.434 66.667 4.92 0.00 0.00 5.19
1882 8312 2.434359 CCCTCAGTTTCCGCGTCC 60.434 66.667 4.92 0.00 0.00 4.79
1883 8313 2.342279 CCTCAGTTTCCGCGTCCA 59.658 61.111 4.92 0.00 0.00 4.02
1884 8314 1.738099 CCTCAGTTTCCGCGTCCAG 60.738 63.158 4.92 0.00 0.00 3.86
1885 8315 2.357034 TCAGTTTCCGCGTCCAGC 60.357 61.111 4.92 0.00 43.95 4.85
1895 8325 3.590824 CGTCCAGCAAACCCATCC 58.409 61.111 0.00 0.00 0.00 3.51
1896 8326 2.046285 CGTCCAGCAAACCCATCCC 61.046 63.158 0.00 0.00 0.00 3.85
1897 8327 1.384191 GTCCAGCAAACCCATCCCT 59.616 57.895 0.00 0.00 0.00 4.20
1898 8328 0.967380 GTCCAGCAAACCCATCCCTG 60.967 60.000 0.00 0.00 0.00 4.45
1899 8329 2.353610 CCAGCAAACCCATCCCTGC 61.354 63.158 0.00 0.00 34.96 4.85
1900 8330 2.037847 AGCAAACCCATCCCTGCC 59.962 61.111 0.00 0.00 35.33 4.85
1901 8331 2.283821 GCAAACCCATCCCTGCCA 60.284 61.111 0.00 0.00 0.00 4.92
1902 8332 2.649129 GCAAACCCATCCCTGCCAC 61.649 63.158 0.00 0.00 0.00 5.01
1903 8333 1.077265 CAAACCCATCCCTGCCACT 59.923 57.895 0.00 0.00 0.00 4.00
1904 8334 0.542702 CAAACCCATCCCTGCCACTT 60.543 55.000 0.00 0.00 0.00 3.16
1905 8335 0.542702 AAACCCATCCCTGCCACTTG 60.543 55.000 0.00 0.00 0.00 3.16
1906 8336 2.043652 CCCATCCCTGCCACTTGG 60.044 66.667 0.00 0.00 38.53 3.61
1936 8366 4.767255 GCCACCCGAGCCACTCTG 62.767 72.222 0.00 0.00 0.00 3.35
1937 8367 4.767255 CCACCCGAGCCACTCTGC 62.767 72.222 0.00 0.00 0.00 4.26
1959 8389 3.801997 CCAGCTTCCCCGAGCCAT 61.802 66.667 0.00 0.00 43.74 4.40
1960 8390 2.203126 CAGCTTCCCCGAGCCATC 60.203 66.667 0.00 0.00 43.74 3.51
1985 8415 4.335584 CTCGCGAGCCTCGATCCC 62.336 72.222 25.07 0.00 43.74 3.85
1987 8417 4.637489 CGCGAGCCTCGATCCCAG 62.637 72.222 20.05 0.00 43.74 4.45
1988 8418 4.959596 GCGAGCCTCGATCCCAGC 62.960 72.222 20.05 0.00 43.74 4.85
1989 8419 4.292178 CGAGCCTCGATCCCAGCC 62.292 72.222 8.82 0.00 43.74 4.85
1990 8420 4.292178 GAGCCTCGATCCCAGCCG 62.292 72.222 0.00 0.00 0.00 5.52
1992 8422 4.593864 GCCTCGATCCCAGCCGTC 62.594 72.222 0.00 0.00 0.00 4.79
1993 8423 3.917760 CCTCGATCCCAGCCGTCC 61.918 72.222 0.00 0.00 0.00 4.79
1994 8424 4.271816 CTCGATCCCAGCCGTCCG 62.272 72.222 0.00 0.00 0.00 4.79
2013 8443 3.224324 GGCCAGATCGGACGGCTA 61.224 66.667 15.15 0.00 45.50 3.93
2014 8444 2.336809 GCCAGATCGGACGGCTAG 59.663 66.667 10.19 0.00 42.78 3.42
2015 8445 3.043419 CCAGATCGGACGGCTAGG 58.957 66.667 0.00 0.00 36.56 3.02
2016 8446 1.528542 CCAGATCGGACGGCTAGGA 60.529 63.158 0.00 0.00 36.56 2.94
2017 8447 1.519751 CCAGATCGGACGGCTAGGAG 61.520 65.000 0.00 0.00 36.56 3.69
2018 8448 0.535328 CAGATCGGACGGCTAGGAGA 60.535 60.000 0.00 0.00 0.00 3.71
2019 8449 0.402504 AGATCGGACGGCTAGGAGAT 59.597 55.000 0.00 0.00 0.00 2.75
2020 8450 0.806241 GATCGGACGGCTAGGAGATC 59.194 60.000 0.00 0.00 0.00 2.75
2021 8451 0.110678 ATCGGACGGCTAGGAGATCA 59.889 55.000 0.00 0.00 0.00 2.92
2022 8452 0.535328 TCGGACGGCTAGGAGATCAG 60.535 60.000 0.00 0.00 0.00 2.90
2023 8453 0.820074 CGGACGGCTAGGAGATCAGT 60.820 60.000 0.00 0.00 0.00 3.41
2024 8454 0.955905 GGACGGCTAGGAGATCAGTC 59.044 60.000 0.00 0.00 0.00 3.51
2025 8455 1.681538 GACGGCTAGGAGATCAGTCA 58.318 55.000 0.00 0.00 0.00 3.41
2026 8456 1.606668 GACGGCTAGGAGATCAGTCAG 59.393 57.143 0.00 0.00 0.00 3.51
2027 8457 0.313672 CGGCTAGGAGATCAGTCAGC 59.686 60.000 0.00 0.00 0.00 4.26
2028 8458 0.678950 GGCTAGGAGATCAGTCAGCC 59.321 60.000 11.25 11.25 41.57 4.85
2029 8459 1.407936 GCTAGGAGATCAGTCAGCCA 58.592 55.000 0.00 0.00 0.00 4.75
2030 8460 1.969923 GCTAGGAGATCAGTCAGCCAT 59.030 52.381 0.00 0.00 0.00 4.40
2031 8461 2.029110 GCTAGGAGATCAGTCAGCCATC 60.029 54.545 0.00 0.00 0.00 3.51
2032 8462 1.422531 AGGAGATCAGTCAGCCATCC 58.577 55.000 0.00 0.00 0.00 3.51
2033 8463 1.126488 GGAGATCAGTCAGCCATCCA 58.874 55.000 0.00 0.00 0.00 3.41
2034 8464 1.070445 GGAGATCAGTCAGCCATCCAG 59.930 57.143 0.00 0.00 0.00 3.86
2035 8465 0.469070 AGATCAGTCAGCCATCCAGC 59.531 55.000 0.00 0.00 0.00 4.85
2036 8466 0.469070 GATCAGTCAGCCATCCAGCT 59.531 55.000 0.00 0.00 46.45 4.24
2037 8467 0.469070 ATCAGTCAGCCATCCAGCTC 59.531 55.000 0.00 0.00 42.61 4.09
2038 8468 1.153208 CAGTCAGCCATCCAGCTCC 60.153 63.158 0.00 0.00 42.61 4.70
2039 8469 2.191641 GTCAGCCATCCAGCTCCC 59.808 66.667 0.00 0.00 42.61 4.30
2040 8470 3.473647 TCAGCCATCCAGCTCCCG 61.474 66.667 0.00 0.00 42.61 5.14
2082 8512 4.208686 CGTCGCCCTAGCCACCTC 62.209 72.222 0.00 0.00 34.57 3.85
2083 8513 3.851128 GTCGCCCTAGCCACCTCC 61.851 72.222 0.00 0.00 34.57 4.30
2157 8587 3.730761 CCGCCTTGTGTGCTGCTC 61.731 66.667 0.00 0.00 0.00 4.26
2158 8588 3.730761 CGCCTTGTGTGCTGCTCC 61.731 66.667 0.00 0.00 0.00 4.70
2159 8589 2.282040 GCCTTGTGTGCTGCTCCT 60.282 61.111 0.00 0.00 0.00 3.69
2160 8590 2.331132 GCCTTGTGTGCTGCTCCTC 61.331 63.158 0.00 0.00 0.00 3.71
2161 8591 1.673665 CCTTGTGTGCTGCTCCTCC 60.674 63.158 0.00 0.00 0.00 4.30
2162 8592 1.673665 CTTGTGTGCTGCTCCTCCC 60.674 63.158 0.00 0.00 0.00 4.30
2163 8593 3.196207 TTGTGTGCTGCTCCTCCCC 62.196 63.158 0.00 0.00 0.00 4.81
2164 8594 4.767255 GTGTGCTGCTCCTCCCCG 62.767 72.222 0.00 0.00 0.00 5.73
2166 8596 4.154347 GTGCTGCTCCTCCCCGAG 62.154 72.222 0.00 0.00 0.00 4.63
2167 8597 4.704103 TGCTGCTCCTCCCCGAGT 62.704 66.667 0.00 0.00 32.11 4.18
2168 8598 4.154347 GCTGCTCCTCCCCGAGTG 62.154 72.222 0.00 0.00 32.11 3.51
2169 8599 4.154347 CTGCTCCTCCCCGAGTGC 62.154 72.222 0.00 0.00 32.11 4.40
2195 8625 4.864334 CCTGCTCCACCGCCCATC 62.864 72.222 0.00 0.00 0.00 3.51
2196 8626 3.790437 CTGCTCCACCGCCCATCT 61.790 66.667 0.00 0.00 0.00 2.90
2197 8627 3.746949 CTGCTCCACCGCCCATCTC 62.747 68.421 0.00 0.00 0.00 2.75
2198 8628 4.554036 GCTCCACCGCCCATCTCC 62.554 72.222 0.00 0.00 0.00 3.71
2199 8629 2.765807 CTCCACCGCCCATCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
2200 8630 2.764128 TCCACCGCCCATCTCCTC 60.764 66.667 0.00 0.00 0.00 3.71
2201 8631 3.866582 CCACCGCCCATCTCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
2202 8632 3.866582 CACCGCCCATCTCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
2205 8635 4.227134 CGCCCATCTCCTCCCGTG 62.227 72.222 0.00 0.00 0.00 4.94
2206 8636 4.554036 GCCCATCTCCTCCCGTGC 62.554 72.222 0.00 0.00 0.00 5.34
2207 8637 4.227134 CCCATCTCCTCCCGTGCG 62.227 72.222 0.00 0.00 0.00 5.34
2208 8638 4.899239 CCATCTCCTCCCGTGCGC 62.899 72.222 0.00 0.00 0.00 6.09
2239 8669 3.479269 CGCCGCTCGTTGGAACTC 61.479 66.667 0.00 0.00 0.00 3.01
2240 8670 3.119096 GCCGCTCGTTGGAACTCC 61.119 66.667 0.00 0.00 0.00 3.85
2241 8671 2.657237 CCGCTCGTTGGAACTCCT 59.343 61.111 0.00 0.00 36.82 3.69
2242 8672 1.004918 CCGCTCGTTGGAACTCCTT 60.005 57.895 0.00 0.00 36.82 3.36
2243 8673 1.014564 CCGCTCGTTGGAACTCCTTC 61.015 60.000 0.00 0.00 36.82 3.46
2244 8674 0.319555 CGCTCGTTGGAACTCCTTCA 60.320 55.000 0.00 0.00 36.82 3.02
2245 8675 1.149148 GCTCGTTGGAACTCCTTCAC 58.851 55.000 0.00 0.00 36.82 3.18
2246 8676 1.540363 GCTCGTTGGAACTCCTTCACA 60.540 52.381 0.00 0.00 36.82 3.58
2247 8677 2.135933 CTCGTTGGAACTCCTTCACAC 58.864 52.381 0.00 0.00 36.82 3.82
2248 8678 1.202604 TCGTTGGAACTCCTTCACACC 60.203 52.381 0.00 0.00 36.82 4.16
2249 8679 1.226746 GTTGGAACTCCTTCACACCG 58.773 55.000 0.00 0.00 36.82 4.94
2250 8680 0.107831 TTGGAACTCCTTCACACCGG 59.892 55.000 0.00 0.00 36.82 5.28
2251 8681 1.671379 GGAACTCCTTCACACCGGC 60.671 63.158 0.00 0.00 0.00 6.13
2252 8682 2.027625 GAACTCCTTCACACCGGCG 61.028 63.158 0.00 0.00 0.00 6.46
2253 8683 2.430382 GAACTCCTTCACACCGGCGA 62.430 60.000 9.30 0.00 0.00 5.54
2254 8684 2.432628 CTCCTTCACACCGGCGAC 60.433 66.667 9.30 0.00 0.00 5.19
2255 8685 3.934391 CTCCTTCACACCGGCGACC 62.934 68.421 9.30 0.00 0.00 4.79
2257 8687 4.308458 CTTCACACCGGCGACCCA 62.308 66.667 9.30 0.00 0.00 4.51
2258 8688 3.818121 CTTCACACCGGCGACCCAA 62.818 63.158 9.30 0.00 0.00 4.12
2259 8689 3.818121 TTCACACCGGCGACCCAAG 62.818 63.158 9.30 0.00 0.00 3.61
2265 8695 4.821589 CGGCGACCCAAGCTCCTC 62.822 72.222 0.00 0.00 34.52 3.71
2266 8696 4.475135 GGCGACCCAAGCTCCTCC 62.475 72.222 0.00 0.00 34.52 4.30
2267 8697 4.821589 GCGACCCAAGCTCCTCCG 62.822 72.222 0.00 0.00 0.00 4.63
2268 8698 3.068691 CGACCCAAGCTCCTCCGA 61.069 66.667 0.00 0.00 0.00 4.55
2269 8699 2.579738 GACCCAAGCTCCTCCGAC 59.420 66.667 0.00 0.00 0.00 4.79
2270 8700 3.358076 GACCCAAGCTCCTCCGACG 62.358 68.421 0.00 0.00 0.00 5.12
2271 8701 4.821589 CCCAAGCTCCTCCGACGC 62.822 72.222 0.00 0.00 0.00 5.19
2272 8702 4.821589 CCAAGCTCCTCCGACGCC 62.822 72.222 0.00 0.00 0.00 5.68
2273 8703 4.821589 CAAGCTCCTCCGACGCCC 62.822 72.222 0.00 0.00 0.00 6.13
2336 8766 4.891037 GCCCTCTGCCATGGCCTC 62.891 72.222 33.44 12.10 39.30 4.70
2337 8767 3.414193 CCCTCTGCCATGGCCTCA 61.414 66.667 33.44 14.81 41.09 3.86
2338 8768 2.764737 CCCTCTGCCATGGCCTCAT 61.765 63.158 33.44 0.00 41.09 2.90
2339 8769 1.228184 CCTCTGCCATGGCCTCATC 60.228 63.158 33.44 6.02 41.09 2.92
2340 8770 1.597302 CTCTGCCATGGCCTCATCG 60.597 63.158 33.44 14.40 41.09 3.84
2341 8771 3.285215 CTGCCATGGCCTCATCGC 61.285 66.667 33.44 6.83 41.09 4.58
2360 8790 4.477975 CCGCTCCGTCACCGTCTC 62.478 72.222 0.00 0.00 0.00 3.36
2361 8791 4.477975 CGCTCCGTCACCGTCTCC 62.478 72.222 0.00 0.00 0.00 3.71
2362 8792 4.477975 GCTCCGTCACCGTCTCCG 62.478 72.222 0.00 0.00 0.00 4.63
2372 8802 3.974757 CGTCTCCGGCCCGTATCC 61.975 72.222 0.85 0.00 0.00 2.59
2373 8803 3.974757 GTCTCCGGCCCGTATCCG 61.975 72.222 0.85 0.00 46.05 4.18
2380 8810 4.642542 GCCCGTATCCGCCGTCTC 62.643 72.222 0.00 0.00 0.00 3.36
2381 8811 3.974757 CCCGTATCCGCCGTCTCC 61.975 72.222 0.00 0.00 0.00 3.71
2382 8812 4.323843 CCGTATCCGCCGTCTCCG 62.324 72.222 0.00 0.00 0.00 4.63
2392 8822 4.831307 CGTCTCCGGCGTCCTTCG 62.831 72.222 6.01 0.07 43.12 3.79
2401 8831 3.181967 CGTCCTTCGCCGCTTCTG 61.182 66.667 0.00 0.00 0.00 3.02
2402 8832 2.815647 GTCCTTCGCCGCTTCTGG 60.816 66.667 0.00 0.00 0.00 3.86
2403 8833 2.994995 TCCTTCGCCGCTTCTGGA 60.995 61.111 0.00 0.00 0.00 3.86
2404 8834 2.187946 CCTTCGCCGCTTCTGGAT 59.812 61.111 0.00 0.00 0.00 3.41
2405 8835 1.884926 CCTTCGCCGCTTCTGGATC 60.885 63.158 0.00 0.00 0.00 3.36
2406 8836 2.202743 TTCGCCGCTTCTGGATCG 60.203 61.111 0.00 0.00 0.00 3.69
2407 8837 2.613739 CTTCGCCGCTTCTGGATCGA 62.614 60.000 0.00 0.00 0.00 3.59
2408 8838 2.613739 TTCGCCGCTTCTGGATCGAG 62.614 60.000 0.00 0.00 0.00 4.04
2409 8839 2.964389 GCCGCTTCTGGATCGAGC 60.964 66.667 0.00 0.00 0.00 5.03
2410 8840 2.811101 CCGCTTCTGGATCGAGCT 59.189 61.111 0.00 0.00 34.33 4.09
2411 8841 1.299773 CCGCTTCTGGATCGAGCTC 60.300 63.158 2.73 2.73 34.33 4.09
2412 8842 1.656875 CGCTTCTGGATCGAGCTCG 60.657 63.158 30.03 30.03 41.45 5.03
2429 8859 3.139469 GACCTCGAGGACGACCCC 61.139 72.222 37.69 12.71 43.81 4.95
2476 8906 2.818274 GGACATGTCCGCCCGAAC 60.818 66.667 28.52 3.92 40.36 3.95
2477 8907 2.818274 GACATGTCCGCCCGAACC 60.818 66.667 15.31 0.00 0.00 3.62
2478 8908 3.599285 GACATGTCCGCCCGAACCA 62.599 63.158 15.31 0.00 0.00 3.67
2479 8909 3.124921 CATGTCCGCCCGAACCAC 61.125 66.667 0.00 0.00 0.00 4.16
2480 8910 4.404098 ATGTCCGCCCGAACCACC 62.404 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.737793 CGTGGGATGCTTCCAGTTAAC 59.262 52.381 19.49 0.00 44.60 2.01
32 6431 1.294780 GCATGCTCCCTATCTCCCG 59.705 63.158 11.37 0.00 0.00 5.14
56 6456 2.563620 TCCACAAGAACAATGCATGCAT 59.436 40.909 27.46 27.46 38.46 3.96
61 6461 5.523188 GTGATTTTTCCACAAGAACAATGCA 59.477 36.000 0.00 0.00 35.48 3.96
104 6504 7.281040 AAGATGTTGCATTACCAATATCTGG 57.719 36.000 12.67 3.28 46.33 3.86
145 6545 1.691434 CCCTCTAGATGGTTGGAGCTC 59.309 57.143 4.71 4.71 0.00 4.09
621 7022 1.098050 CGAAGGATTGCTTTCCCCTG 58.902 55.000 2.32 0.00 36.35 4.45
663 7064 5.335661 GGAATGCTTCCGTAGAACATGTTTT 60.336 40.000 13.36 9.88 40.59 2.43
682 7083 1.607628 GATAGCTGCTGCCAAGGAATG 59.392 52.381 13.43 0.00 40.80 2.67
717 7118 1.201647 CAGCAAGATCAAGCAGTTGGG 59.798 52.381 11.31 0.00 34.09 4.12
781 7182 5.704515 CACAAAAGTCTGTCTCATCAAGGAT 59.295 40.000 0.00 0.00 0.00 3.24
862 7263 6.889301 ATTATGTCCATGCTTCCATTGTAG 57.111 37.500 0.00 0.00 0.00 2.74
1185 7587 3.223435 GAGCTGACTGCCTGTAGGTATA 58.777 50.000 0.00 0.00 44.23 1.47
1426 7840 2.573880 GCATCGATGCGATTGAAGAG 57.426 50.000 32.60 0.41 44.59 2.85
1554 7982 5.582269 CACTACAAGCACATATACTTGCAGT 59.418 40.000 9.48 10.33 46.51 4.40
1685 8115 6.806668 AAAACAGGGGAAGATGAAGAAAAA 57.193 33.333 0.00 0.00 0.00 1.94
1706 8136 3.703556 TGTGGCTTCACAGGATTCAAAAA 59.296 39.130 0.00 0.00 45.47 1.94
1707 8137 3.295093 TGTGGCTTCACAGGATTCAAAA 58.705 40.909 0.00 0.00 45.47 2.44
1708 8138 2.942804 TGTGGCTTCACAGGATTCAAA 58.057 42.857 0.00 0.00 45.47 2.69
1709 8139 2.655090 TGTGGCTTCACAGGATTCAA 57.345 45.000 0.00 0.00 45.47 2.69
1718 8148 0.752658 AAGGGCTTTTGTGGCTTCAC 59.247 50.000 0.00 0.00 41.56 3.18
1719 8149 2.373335 TAAGGGCTTTTGTGGCTTCA 57.627 45.000 0.00 0.00 0.00 3.02
1720 8150 2.610479 GCTTAAGGGCTTTTGTGGCTTC 60.610 50.000 4.29 0.00 0.00 3.86
1721 8151 1.344438 GCTTAAGGGCTTTTGTGGCTT 59.656 47.619 4.29 0.00 0.00 4.35
1722 8152 0.969149 GCTTAAGGGCTTTTGTGGCT 59.031 50.000 4.29 0.00 0.00 4.75
1723 8153 0.678950 TGCTTAAGGGCTTTTGTGGC 59.321 50.000 4.29 0.00 0.00 5.01
1724 8154 1.686052 TGTGCTTAAGGGCTTTTGTGG 59.314 47.619 4.29 0.00 0.00 4.17
1725 8155 3.451141 TTGTGCTTAAGGGCTTTTGTG 57.549 42.857 4.29 0.00 0.00 3.33
1726 8156 3.450817 ACTTTGTGCTTAAGGGCTTTTGT 59.549 39.130 4.29 0.00 0.00 2.83
1727 8157 4.058721 ACTTTGTGCTTAAGGGCTTTTG 57.941 40.909 4.29 0.00 0.00 2.44
1728 8158 4.893524 AGTACTTTGTGCTTAAGGGCTTTT 59.106 37.500 4.29 0.00 0.00 2.27
1729 8159 4.470602 AGTACTTTGTGCTTAAGGGCTTT 58.529 39.130 4.29 0.00 0.00 3.51
1730 8160 4.100279 AGTACTTTGTGCTTAAGGGCTT 57.900 40.909 4.29 0.00 0.00 4.35
1731 8161 3.790089 AGTACTTTGTGCTTAAGGGCT 57.210 42.857 4.29 0.00 0.00 5.19
1732 8162 4.576879 AGTAGTACTTTGTGCTTAAGGGC 58.423 43.478 0.00 0.00 30.04 5.19
1733 8163 9.477484 CATATAGTAGTACTTTGTGCTTAAGGG 57.523 37.037 8.40 0.00 30.04 3.95
1762 8192 2.021837 AGGGGTTAGGGTTTGGGTTTTT 60.022 45.455 0.00 0.00 0.00 1.94
1763 8193 1.581640 AGGGGTTAGGGTTTGGGTTTT 59.418 47.619 0.00 0.00 0.00 2.43
1764 8194 1.132977 CAGGGGTTAGGGTTTGGGTTT 60.133 52.381 0.00 0.00 0.00 3.27
1765 8195 0.485543 CAGGGGTTAGGGTTTGGGTT 59.514 55.000 0.00 0.00 0.00 4.11
1766 8196 2.089116 GCAGGGGTTAGGGTTTGGGT 62.089 60.000 0.00 0.00 0.00 4.51
1767 8197 1.304962 GCAGGGGTTAGGGTTTGGG 60.305 63.158 0.00 0.00 0.00 4.12
1768 8198 1.304962 GGCAGGGGTTAGGGTTTGG 60.305 63.158 0.00 0.00 0.00 3.28
1769 8199 0.996583 TAGGCAGGGGTTAGGGTTTG 59.003 55.000 0.00 0.00 0.00 2.93
1770 8200 1.995868 ATAGGCAGGGGTTAGGGTTT 58.004 50.000 0.00 0.00 0.00 3.27
1771 8201 1.995868 AATAGGCAGGGGTTAGGGTT 58.004 50.000 0.00 0.00 0.00 4.11
1772 8202 1.995868 AAATAGGCAGGGGTTAGGGT 58.004 50.000 0.00 0.00 0.00 4.34
1773 8203 3.750922 GCTTAAATAGGCAGGGGTTAGGG 60.751 52.174 0.00 0.00 0.00 3.53
1774 8204 3.117663 TGCTTAAATAGGCAGGGGTTAGG 60.118 47.826 0.00 0.00 33.09 2.69
1775 8205 4.164843 TGCTTAAATAGGCAGGGGTTAG 57.835 45.455 0.00 0.00 33.09 2.34
1783 8213 2.158755 GGAGAGGCTGCTTAAATAGGCA 60.159 50.000 12.69 0.00 41.49 4.75
1784 8214 2.158755 TGGAGAGGCTGCTTAAATAGGC 60.159 50.000 0.00 4.56 39.54 3.93
1785 8215 3.845781 TGGAGAGGCTGCTTAAATAGG 57.154 47.619 0.00 0.00 0.00 2.57
1786 8216 4.712476 ACATGGAGAGGCTGCTTAAATAG 58.288 43.478 0.00 0.00 0.00 1.73
1787 8217 4.164030 TGACATGGAGAGGCTGCTTAAATA 59.836 41.667 0.00 0.00 0.00 1.40
1788 8218 3.054139 TGACATGGAGAGGCTGCTTAAAT 60.054 43.478 0.00 0.00 0.00 1.40
1789 8219 2.305635 TGACATGGAGAGGCTGCTTAAA 59.694 45.455 0.00 0.00 0.00 1.52
1790 8220 1.908619 TGACATGGAGAGGCTGCTTAA 59.091 47.619 0.00 0.00 0.00 1.85
1791 8221 1.571955 TGACATGGAGAGGCTGCTTA 58.428 50.000 0.00 0.00 0.00 3.09
1792 8222 0.917533 ATGACATGGAGAGGCTGCTT 59.082 50.000 0.00 0.00 0.00 3.91
1793 8223 0.917533 AATGACATGGAGAGGCTGCT 59.082 50.000 0.00 0.00 0.00 4.24
1794 8224 1.760192 AAATGACATGGAGAGGCTGC 58.240 50.000 0.00 0.00 0.00 5.25
1795 8225 3.119245 CCAAAAATGACATGGAGAGGCTG 60.119 47.826 0.00 0.00 36.27 4.85
1796 8226 3.094572 CCAAAAATGACATGGAGAGGCT 58.905 45.455 0.00 0.00 36.27 4.58
1797 8227 3.091545 TCCAAAAATGACATGGAGAGGC 58.908 45.455 0.00 0.00 38.30 4.70
1798 8228 5.473039 GTTTCCAAAAATGACATGGAGAGG 58.527 41.667 0.00 0.00 43.69 3.69
1799 8229 5.244626 AGGTTTCCAAAAATGACATGGAGAG 59.755 40.000 0.00 0.00 43.69 3.20
1800 8230 5.147032 AGGTTTCCAAAAATGACATGGAGA 58.853 37.500 0.00 0.00 43.69 3.71
1801 8231 5.473066 AGGTTTCCAAAAATGACATGGAG 57.527 39.130 0.00 0.00 43.69 3.86
1802 8232 5.047377 GCTAGGTTTCCAAAAATGACATGGA 60.047 40.000 0.00 0.00 41.36 3.41
1803 8233 5.047092 AGCTAGGTTTCCAAAAATGACATGG 60.047 40.000 0.00 0.00 35.49 3.66
1804 8234 6.029346 AGCTAGGTTTCCAAAAATGACATG 57.971 37.500 0.00 0.00 0.00 3.21
1805 8235 6.295292 GGAAGCTAGGTTTCCAAAAATGACAT 60.295 38.462 8.87 0.00 41.52 3.06
1806 8236 5.010617 GGAAGCTAGGTTTCCAAAAATGACA 59.989 40.000 8.87 0.00 41.52 3.58
1807 8237 5.470368 GGAAGCTAGGTTTCCAAAAATGAC 58.530 41.667 8.87 0.00 41.52 3.06
1808 8238 4.526650 GGGAAGCTAGGTTTCCAAAAATGA 59.473 41.667 24.53 0.00 43.25 2.57
1809 8239 4.528206 AGGGAAGCTAGGTTTCCAAAAATG 59.472 41.667 29.52 0.00 43.25 2.32
1810 8240 4.752063 AGGGAAGCTAGGTTTCCAAAAAT 58.248 39.130 29.52 9.51 43.25 1.82
1811 8241 4.193240 AGGGAAGCTAGGTTTCCAAAAA 57.807 40.909 29.52 0.00 43.25 1.94
1812 8242 3.895704 AGGGAAGCTAGGTTTCCAAAA 57.104 42.857 29.52 0.00 43.25 2.44
1813 8243 3.009805 GGTAGGGAAGCTAGGTTTCCAAA 59.990 47.826 29.52 16.74 43.25 3.28
1814 8244 2.574824 GGTAGGGAAGCTAGGTTTCCAA 59.425 50.000 29.52 12.02 43.25 3.53
1815 8245 2.193993 GGTAGGGAAGCTAGGTTTCCA 58.806 52.381 29.52 15.30 43.25 3.53
1816 8246 1.489649 GGGTAGGGAAGCTAGGTTTCC 59.510 57.143 22.47 22.47 41.24 3.13
1817 8247 1.489649 GGGGTAGGGAAGCTAGGTTTC 59.510 57.143 8.87 6.51 0.00 2.78
1818 8248 1.082365 AGGGGTAGGGAAGCTAGGTTT 59.918 52.381 8.87 0.00 0.00 3.27
1819 8249 0.723289 AGGGGTAGGGAAGCTAGGTT 59.277 55.000 6.94 6.94 0.00 3.50
1820 8250 0.723289 AAGGGGTAGGGAAGCTAGGT 59.277 55.000 0.00 0.00 0.00 3.08
1821 8251 1.062044 AGAAGGGGTAGGGAAGCTAGG 60.062 57.143 0.00 0.00 0.00 3.02
1822 8252 2.480642 AGAAGGGGTAGGGAAGCTAG 57.519 55.000 0.00 0.00 0.00 3.42
1823 8253 2.318207 AGAAGAAGGGGTAGGGAAGCTA 59.682 50.000 0.00 0.00 0.00 3.32
1824 8254 1.081343 AGAAGAAGGGGTAGGGAAGCT 59.919 52.381 0.00 0.00 0.00 3.74
1825 8255 1.585895 AGAAGAAGGGGTAGGGAAGC 58.414 55.000 0.00 0.00 0.00 3.86
1826 8256 2.506231 GGAAGAAGAAGGGGTAGGGAAG 59.494 54.545 0.00 0.00 0.00 3.46
1827 8257 2.558974 GGAAGAAGAAGGGGTAGGGAA 58.441 52.381 0.00 0.00 0.00 3.97
1828 8258 1.274242 GGGAAGAAGAAGGGGTAGGGA 60.274 57.143 0.00 0.00 0.00 4.20
1829 8259 1.214217 GGGAAGAAGAAGGGGTAGGG 58.786 60.000 0.00 0.00 0.00 3.53
1830 8260 0.831307 CGGGAAGAAGAAGGGGTAGG 59.169 60.000 0.00 0.00 0.00 3.18
1831 8261 0.178301 GCGGGAAGAAGAAGGGGTAG 59.822 60.000 0.00 0.00 0.00 3.18
1832 8262 0.545787 TGCGGGAAGAAGAAGGGGTA 60.546 55.000 0.00 0.00 0.00 3.69
1833 8263 1.846124 TGCGGGAAGAAGAAGGGGT 60.846 57.895 0.00 0.00 0.00 4.95
1834 8264 1.377333 GTGCGGGAAGAAGAAGGGG 60.377 63.158 0.00 0.00 0.00 4.79
1835 8265 0.955919 GTGTGCGGGAAGAAGAAGGG 60.956 60.000 0.00 0.00 0.00 3.95
1836 8266 1.291877 CGTGTGCGGGAAGAAGAAGG 61.292 60.000 0.00 0.00 0.00 3.46
1837 8267 1.901650 GCGTGTGCGGGAAGAAGAAG 61.902 60.000 0.00 0.00 38.78 2.85
1838 8268 1.959226 GCGTGTGCGGGAAGAAGAA 60.959 57.895 0.00 0.00 38.78 2.52
1839 8269 2.357034 GCGTGTGCGGGAAGAAGA 60.357 61.111 0.00 0.00 38.78 2.87
1840 8270 3.423154 GGCGTGTGCGGGAAGAAG 61.423 66.667 0.00 0.00 44.10 2.85
1857 8287 4.351054 AAACTGAGGGGGCTGGCG 62.351 66.667 0.00 0.00 0.00 5.69
1858 8288 2.361737 GAAACTGAGGGGGCTGGC 60.362 66.667 0.00 0.00 0.00 4.85
1859 8289 2.356667 GGAAACTGAGGGGGCTGG 59.643 66.667 0.00 0.00 0.00 4.85
1860 8290 2.045926 CGGAAACTGAGGGGGCTG 60.046 66.667 0.00 0.00 0.00 4.85
1861 8291 4.035102 GCGGAAACTGAGGGGGCT 62.035 66.667 0.00 0.00 0.00 5.19
1863 8293 3.952628 GACGCGGAAACTGAGGGGG 62.953 68.421 12.47 0.00 0.00 5.40
1864 8294 2.434359 GACGCGGAAACTGAGGGG 60.434 66.667 12.47 0.00 0.00 4.79
1865 8295 2.434359 GGACGCGGAAACTGAGGG 60.434 66.667 12.47 0.00 0.00 4.30
1866 8296 1.738099 CTGGACGCGGAAACTGAGG 60.738 63.158 12.47 0.00 0.00 3.86
1867 8297 2.383527 GCTGGACGCGGAAACTGAG 61.384 63.158 12.47 0.00 0.00 3.35
1868 8298 2.357034 GCTGGACGCGGAAACTGA 60.357 61.111 12.47 0.00 0.00 3.41
1869 8299 1.781025 TTTGCTGGACGCGGAAACTG 61.781 55.000 12.47 2.60 43.27 3.16
1870 8300 1.525077 TTTGCTGGACGCGGAAACT 60.525 52.632 12.47 0.00 43.27 2.66
1871 8301 1.370051 GTTTGCTGGACGCGGAAAC 60.370 57.895 12.47 5.78 43.27 2.78
1872 8302 2.548295 GGTTTGCTGGACGCGGAAA 61.548 57.895 12.47 0.00 43.27 3.13
1873 8303 2.975799 GGTTTGCTGGACGCGGAA 60.976 61.111 12.47 0.00 43.27 4.30
1876 8306 3.039202 GATGGGTTTGCTGGACGCG 62.039 63.158 3.53 3.53 43.27 6.01
1877 8307 2.700773 GGATGGGTTTGCTGGACGC 61.701 63.158 0.00 0.00 39.77 5.19
1878 8308 2.046285 GGGATGGGTTTGCTGGACG 61.046 63.158 0.00 0.00 0.00 4.79
1879 8309 0.967380 CAGGGATGGGTTTGCTGGAC 60.967 60.000 0.00 0.00 0.00 4.02
1880 8310 1.383799 CAGGGATGGGTTTGCTGGA 59.616 57.895 0.00 0.00 0.00 3.86
1881 8311 2.353610 GCAGGGATGGGTTTGCTGG 61.354 63.158 0.00 0.00 33.88 4.85
1882 8312 2.353610 GGCAGGGATGGGTTTGCTG 61.354 63.158 0.00 0.00 36.79 4.41
1883 8313 2.037847 GGCAGGGATGGGTTTGCT 59.962 61.111 0.00 0.00 36.79 3.91
1884 8314 2.283821 TGGCAGGGATGGGTTTGC 60.284 61.111 0.00 0.00 35.87 3.68
1885 8315 0.542702 AAGTGGCAGGGATGGGTTTG 60.543 55.000 0.00 0.00 0.00 2.93
1886 8316 0.542702 CAAGTGGCAGGGATGGGTTT 60.543 55.000 0.00 0.00 0.00 3.27
1887 8317 1.077265 CAAGTGGCAGGGATGGGTT 59.923 57.895 0.00 0.00 0.00 4.11
1888 8318 2.765969 CAAGTGGCAGGGATGGGT 59.234 61.111 0.00 0.00 0.00 4.51
1889 8319 2.043652 CCAAGTGGCAGGGATGGG 60.044 66.667 0.00 0.00 0.00 4.00
1919 8349 4.767255 CAGAGTGGCTCGGGTGGC 62.767 72.222 0.00 0.00 35.36 5.01
1920 8350 4.767255 GCAGAGTGGCTCGGGTGG 62.767 72.222 0.00 0.00 35.36 4.61
1942 8372 3.764160 GATGGCTCGGGGAAGCTGG 62.764 68.421 0.00 0.00 42.13 4.85
1943 8373 2.203126 GATGGCTCGGGGAAGCTG 60.203 66.667 0.00 0.00 42.13 4.24
1944 8374 3.854669 CGATGGCTCGGGGAAGCT 61.855 66.667 0.00 0.00 42.13 3.74
1968 8398 4.335584 GGGATCGAGGCTCGCGAG 62.336 72.222 31.37 31.37 39.20 5.03
1970 8400 4.637489 CTGGGATCGAGGCTCGCG 62.637 72.222 31.01 10.88 40.21 5.87
1971 8401 4.959596 GCTGGGATCGAGGCTCGC 62.960 72.222 31.01 18.16 40.21 5.03
1972 8402 4.292178 GGCTGGGATCGAGGCTCG 62.292 72.222 30.10 30.10 42.10 5.03
1973 8403 4.292178 CGGCTGGGATCGAGGCTC 62.292 72.222 3.87 3.87 33.89 4.70
1975 8405 4.593864 GACGGCTGGGATCGAGGC 62.594 72.222 0.00 6.81 0.00 4.70
1976 8406 3.917760 GGACGGCTGGGATCGAGG 61.918 72.222 0.00 0.00 0.00 4.63
1977 8407 4.271816 CGGACGGCTGGGATCGAG 62.272 72.222 0.00 0.00 0.00 4.04
1998 8428 1.519751 CTCCTAGCCGTCCGATCTGG 61.520 65.000 0.00 0.00 40.09 3.86
1999 8429 0.535328 TCTCCTAGCCGTCCGATCTG 60.535 60.000 0.00 0.00 0.00 2.90
2000 8430 0.402504 ATCTCCTAGCCGTCCGATCT 59.597 55.000 0.00 0.00 0.00 2.75
2001 8431 0.806241 GATCTCCTAGCCGTCCGATC 59.194 60.000 0.00 0.00 0.00 3.69
2002 8432 0.110678 TGATCTCCTAGCCGTCCGAT 59.889 55.000 0.00 0.00 0.00 4.18
2003 8433 0.535328 CTGATCTCCTAGCCGTCCGA 60.535 60.000 0.00 0.00 0.00 4.55
2004 8434 0.820074 ACTGATCTCCTAGCCGTCCG 60.820 60.000 0.00 0.00 0.00 4.79
2005 8435 0.955905 GACTGATCTCCTAGCCGTCC 59.044 60.000 0.00 0.00 0.00 4.79
2006 8436 1.606668 CTGACTGATCTCCTAGCCGTC 59.393 57.143 0.00 0.00 0.00 4.79
2007 8437 1.686355 CTGACTGATCTCCTAGCCGT 58.314 55.000 0.00 0.00 0.00 5.68
2008 8438 0.313672 GCTGACTGATCTCCTAGCCG 59.686 60.000 0.00 0.00 0.00 5.52
2009 8439 0.678950 GGCTGACTGATCTCCTAGCC 59.321 60.000 13.24 13.24 43.20 3.93
2010 8440 1.407936 TGGCTGACTGATCTCCTAGC 58.592 55.000 0.00 0.00 0.00 3.42
2011 8441 2.562298 GGATGGCTGACTGATCTCCTAG 59.438 54.545 0.00 0.00 0.00 3.02
2012 8442 2.091111 TGGATGGCTGACTGATCTCCTA 60.091 50.000 0.00 0.00 0.00 2.94
2013 8443 1.343782 TGGATGGCTGACTGATCTCCT 60.344 52.381 0.00 0.00 0.00 3.69
2014 8444 1.070445 CTGGATGGCTGACTGATCTCC 59.930 57.143 0.00 0.00 0.00 3.71
2015 8445 1.540797 GCTGGATGGCTGACTGATCTC 60.541 57.143 0.00 0.00 0.00 2.75
2016 8446 0.469070 GCTGGATGGCTGACTGATCT 59.531 55.000 0.00 0.00 0.00 2.75
2017 8447 0.469070 AGCTGGATGGCTGACTGATC 59.531 55.000 0.00 0.00 41.43 2.92
2018 8448 0.469070 GAGCTGGATGGCTGACTGAT 59.531 55.000 0.00 0.00 43.20 2.90
2019 8449 1.620739 GGAGCTGGATGGCTGACTGA 61.621 60.000 0.00 0.00 43.20 3.41
2020 8450 1.153208 GGAGCTGGATGGCTGACTG 60.153 63.158 0.00 0.00 43.20 3.51
2021 8451 2.373707 GGGAGCTGGATGGCTGACT 61.374 63.158 0.00 0.00 43.20 3.41
2022 8452 2.191641 GGGAGCTGGATGGCTGAC 59.808 66.667 0.00 0.00 43.20 3.51
2023 8453 3.473647 CGGGAGCTGGATGGCTGA 61.474 66.667 0.00 0.00 43.20 4.26
2065 8495 4.208686 GAGGTGGCTAGGGCGACG 62.209 72.222 0.00 0.00 45.92 5.12
2066 8496 3.851128 GGAGGTGGCTAGGGCGAC 61.851 72.222 0.00 0.00 44.59 5.19
2140 8570 3.730761 GAGCAGCACACAAGGCGG 61.731 66.667 0.00 0.00 36.08 6.13
2141 8571 3.730761 GGAGCAGCACACAAGGCG 61.731 66.667 0.00 0.00 36.08 5.52
2142 8572 2.282040 AGGAGCAGCACACAAGGC 60.282 61.111 0.00 0.00 0.00 4.35
2143 8573 1.673665 GGAGGAGCAGCACACAAGG 60.674 63.158 0.00 0.00 0.00 3.61
2144 8574 1.673665 GGGAGGAGCAGCACACAAG 60.674 63.158 0.00 0.00 0.00 3.16
2145 8575 2.431683 GGGAGGAGCAGCACACAA 59.568 61.111 0.00 0.00 0.00 3.33
2146 8576 3.640407 GGGGAGGAGCAGCACACA 61.640 66.667 0.00 0.00 0.00 3.72
2147 8577 4.767255 CGGGGAGGAGCAGCACAC 62.767 72.222 0.00 0.00 0.00 3.82
2149 8579 4.154347 CTCGGGGAGGAGCAGCAC 62.154 72.222 0.00 0.00 0.00 4.40
2150 8580 4.704103 ACTCGGGGAGGAGCAGCA 62.704 66.667 0.00 0.00 37.57 4.41
2151 8581 4.154347 CACTCGGGGAGGAGCAGC 62.154 72.222 0.00 0.00 37.57 5.25
2152 8582 4.154347 GCACTCGGGGAGGAGCAG 62.154 72.222 7.24 0.00 37.57 4.24
2178 8608 4.864334 GATGGGCGGTGGAGCAGG 62.864 72.222 0.00 0.00 39.27 4.85
2179 8609 3.746949 GAGATGGGCGGTGGAGCAG 62.747 68.421 0.00 0.00 39.27 4.24
2180 8610 3.785859 GAGATGGGCGGTGGAGCA 61.786 66.667 0.00 0.00 39.27 4.26
2181 8611 4.554036 GGAGATGGGCGGTGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
2182 8612 2.765807 AGGAGATGGGCGGTGGAG 60.766 66.667 0.00 0.00 0.00 3.86
2183 8613 2.764128 GAGGAGATGGGCGGTGGA 60.764 66.667 0.00 0.00 0.00 4.02
2184 8614 3.866582 GGAGGAGATGGGCGGTGG 61.867 72.222 0.00 0.00 0.00 4.61
2185 8615 3.866582 GGGAGGAGATGGGCGGTG 61.867 72.222 0.00 0.00 0.00 4.94
2188 8618 4.227134 CACGGGAGGAGATGGGCG 62.227 72.222 0.00 0.00 0.00 6.13
2189 8619 4.554036 GCACGGGAGGAGATGGGC 62.554 72.222 0.00 0.00 0.00 5.36
2190 8620 4.227134 CGCACGGGAGGAGATGGG 62.227 72.222 0.00 0.00 0.00 4.00
2191 8621 4.899239 GCGCACGGGAGGAGATGG 62.899 72.222 0.30 0.00 0.00 3.51
2223 8653 3.119096 GGAGTTCCAACGAGCGGC 61.119 66.667 0.00 0.00 35.64 6.53
2224 8654 1.004918 AAGGAGTTCCAACGAGCGG 60.005 57.895 0.28 0.00 38.89 5.52
2225 8655 0.319555 TGAAGGAGTTCCAACGAGCG 60.320 55.000 0.28 0.00 38.89 5.03
2226 8656 1.149148 GTGAAGGAGTTCCAACGAGC 58.851 55.000 0.28 0.00 38.89 5.03
2227 8657 2.135933 GTGTGAAGGAGTTCCAACGAG 58.864 52.381 0.28 0.00 38.89 4.18
2228 8658 1.202604 GGTGTGAAGGAGTTCCAACGA 60.203 52.381 0.28 0.00 38.89 3.85
2229 8659 1.226746 GGTGTGAAGGAGTTCCAACG 58.773 55.000 0.28 0.00 38.89 4.10
2230 8660 1.226746 CGGTGTGAAGGAGTTCCAAC 58.773 55.000 0.28 0.00 38.89 3.77
2231 8661 0.107831 CCGGTGTGAAGGAGTTCCAA 59.892 55.000 0.00 0.00 38.89 3.53
2232 8662 1.752198 CCGGTGTGAAGGAGTTCCA 59.248 57.895 0.00 0.00 38.89 3.53
2233 8663 1.671379 GCCGGTGTGAAGGAGTTCC 60.671 63.158 1.90 0.00 0.00 3.62
2234 8664 2.027625 CGCCGGTGTGAAGGAGTTC 61.028 63.158 6.91 0.00 0.00 3.01
2235 8665 2.030562 CGCCGGTGTGAAGGAGTT 59.969 61.111 6.91 0.00 0.00 3.01
2236 8666 2.915659 TCGCCGGTGTGAAGGAGT 60.916 61.111 16.01 0.00 0.00 3.85
2237 8667 2.432628 GTCGCCGGTGTGAAGGAG 60.433 66.667 16.01 0.00 31.62 3.69
2238 8668 3.998672 GGTCGCCGGTGTGAAGGA 61.999 66.667 16.01 0.00 31.62 3.36
2240 8670 3.818121 TTGGGTCGCCGGTGTGAAG 62.818 63.158 16.01 0.00 31.62 3.02
2241 8671 3.818121 CTTGGGTCGCCGGTGTGAA 62.818 63.158 16.01 3.01 31.62 3.18
2242 8672 4.308458 CTTGGGTCGCCGGTGTGA 62.308 66.667 16.01 1.54 0.00 3.58
2248 8678 4.821589 GAGGAGCTTGGGTCGCCG 62.822 72.222 0.00 0.00 0.00 6.46
2249 8679 4.475135 GGAGGAGCTTGGGTCGCC 62.475 72.222 0.00 0.00 0.00 5.54
2250 8680 4.821589 CGGAGGAGCTTGGGTCGC 62.822 72.222 0.00 0.00 0.00 5.19
2251 8681 3.068691 TCGGAGGAGCTTGGGTCG 61.069 66.667 0.00 0.00 0.00 4.79
2252 8682 2.579738 GTCGGAGGAGCTTGGGTC 59.420 66.667 0.00 0.00 0.00 4.46
2253 8683 3.382832 CGTCGGAGGAGCTTGGGT 61.383 66.667 0.00 0.00 0.00 4.51
2254 8684 4.821589 GCGTCGGAGGAGCTTGGG 62.822 72.222 1.18 0.00 0.00 4.12
2255 8685 4.821589 GGCGTCGGAGGAGCTTGG 62.822 72.222 1.18 0.00 0.00 3.61
2256 8686 4.821589 GGGCGTCGGAGGAGCTTG 62.822 72.222 1.18 0.00 0.00 4.01
2320 8750 2.693896 GATGAGGCCATGGCAGAGGG 62.694 65.000 36.56 0.00 44.11 4.30
2321 8751 1.228184 GATGAGGCCATGGCAGAGG 60.228 63.158 36.56 0.00 44.11 3.69
2322 8752 1.597302 CGATGAGGCCATGGCAGAG 60.597 63.158 36.56 17.56 44.11 3.35
2323 8753 2.507452 CGATGAGGCCATGGCAGA 59.493 61.111 36.56 20.39 44.11 4.26
2385 8815 2.579684 ATCCAGAAGCGGCGAAGGAC 62.580 60.000 12.98 0.00 0.00 3.85
2386 8816 2.298158 GATCCAGAAGCGGCGAAGGA 62.298 60.000 12.98 9.93 0.00 3.36
2387 8817 1.884926 GATCCAGAAGCGGCGAAGG 60.885 63.158 12.98 3.94 0.00 3.46
2388 8818 2.233654 CGATCCAGAAGCGGCGAAG 61.234 63.158 12.98 0.00 0.00 3.79
2389 8819 2.202743 CGATCCAGAAGCGGCGAA 60.203 61.111 12.98 0.00 0.00 4.70
2390 8820 3.126074 CTCGATCCAGAAGCGGCGA 62.126 63.158 12.98 0.00 0.00 5.54
2391 8821 2.656651 CTCGATCCAGAAGCGGCG 60.657 66.667 0.51 0.51 0.00 6.46
2392 8822 2.964389 GCTCGATCCAGAAGCGGC 60.964 66.667 0.00 0.00 0.00 6.53
2393 8823 1.299773 GAGCTCGATCCAGAAGCGG 60.300 63.158 0.00 0.00 0.00 5.52
2394 8824 1.656875 CGAGCTCGATCCAGAAGCG 60.657 63.158 32.06 0.00 43.02 4.68
2395 8825 1.730487 TCGAGCTCGATCCAGAAGC 59.270 57.895 33.84 0.00 44.22 3.86
2411 8841 3.507009 GGGTCGTCCTCGAGGTCG 61.507 72.222 35.44 35.44 46.96 4.79
2412 8842 3.139469 GGGGTCGTCCTCGAGGTC 61.139 72.222 30.17 23.75 46.96 3.85
2459 8889 2.818274 GTTCGGGCGGACATGTCC 60.818 66.667 31.59 31.59 46.18 4.02
2460 8890 2.818274 GGTTCGGGCGGACATGTC 60.818 66.667 17.91 17.91 0.00 3.06
2461 8891 3.632080 TGGTTCGGGCGGACATGT 61.632 61.111 0.00 0.00 0.00 3.21
2462 8892 3.124921 GTGGTTCGGGCGGACATG 61.125 66.667 0.00 0.00 0.00 3.21
2463 8893 4.404098 GGTGGTTCGGGCGGACAT 62.404 66.667 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.