Multiple sequence alignment - TraesCS7B01G485500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G485500 chr7B 100.000 2405 0 0 1 2405 742120865 742123269 0.000000e+00 4442.0
1 TraesCS7B01G485500 chr7B 93.777 1414 70 11 867 2277 742197286 742195888 0.000000e+00 2108.0
2 TraesCS7B01G485500 chr7B 95.185 810 33 6 891 1698 742155501 742154696 0.000000e+00 1275.0
3 TraesCS7B01G485500 chr7B 91.852 675 39 8 906 1569 742127813 742128482 0.000000e+00 928.0
4 TraesCS7B01G485500 chr7B 89.905 733 49 11 1419 2141 742128890 742129607 0.000000e+00 920.0
5 TraesCS7B01G485500 chr7B 92.073 492 33 2 376 867 742155953 742155468 0.000000e+00 688.0
6 TraesCS7B01G485500 chr7B 96.579 380 13 0 1 380 742161637 742161258 4.360000e-177 630.0
7 TraesCS7B01G485500 chr7B 94.459 379 18 2 1878 2253 742128518 742128896 4.460000e-162 580.0
8 TraesCS7B01G485500 chr7B 94.167 120 7 0 2286 2405 742129608 742129727 1.470000e-42 183.0
9 TraesCS7B01G485500 chr7B 77.817 284 59 4 1124 1405 742191636 742191355 3.180000e-39 172.0
10 TraesCS7B01G485500 chr7B 76.080 301 64 7 1109 1405 742154271 742153975 1.490000e-32 150.0
11 TraesCS7B01G485500 chr7B 88.000 125 13 1 513 635 742197616 742197492 1.930000e-31 147.0
12 TraesCS7B01G485500 chr7A 88.645 273 24 3 1311 1583 732394259 732393994 2.310000e-85 326.0
13 TraesCS7B01G485500 chr7A 88.213 263 29 2 1852 2113 732394403 732394142 1.800000e-81 313.0
14 TraesCS7B01G485500 chr7A 75.926 324 68 9 1087 1405 732319087 732318769 8.900000e-35 158.0
15 TraesCS7B01G485500 chr7D 79.085 306 58 6 1103 1405 634050296 634050598 3.130000e-49 206.0
16 TraesCS7B01G485500 chr7D 79.447 253 43 9 1156 1405 623462480 623462726 1.140000e-38 171.0
17 TraesCS7B01G485500 chrUn 79.447 253 43 9 1156 1405 296702012 296701766 1.140000e-38 171.0
18 TraesCS7B01G485500 chr2B 97.059 34 0 1 1771 1803 70839675 70839708 3.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G485500 chr7B 742120865 742123269 2404 False 4442.000000 4442 100.000000 1 2405 1 chr7B.!!$F1 2404
1 TraesCS7B01G485500 chr7B 742195888 742197616 1728 True 1127.500000 2108 90.888500 513 2277 2 chr7B.!!$R4 1764
2 TraesCS7B01G485500 chr7B 742153975 742155953 1978 True 704.333333 1275 87.779333 376 1698 3 chr7B.!!$R3 1322
3 TraesCS7B01G485500 chr7B 742127813 742129727 1914 False 652.750000 928 92.595750 906 2405 4 chr7B.!!$F2 1499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.031515 TCCCTGTATGTCCACGGGAT 60.032 55.0 2.61 0.0 46.39 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2988 0.252742 TTCCTCCTCCACCTTCTCCC 60.253 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.803154 GTACCATCAGTAGCTTTTTCTTGT 57.197 37.500 0.00 0.00 0.00 3.16
24 25 5.948992 ACCATCAGTAGCTTTTTCTTGTC 57.051 39.130 0.00 0.00 0.00 3.18
25 26 5.376625 ACCATCAGTAGCTTTTTCTTGTCA 58.623 37.500 0.00 0.00 0.00 3.58
26 27 5.471456 ACCATCAGTAGCTTTTTCTTGTCAG 59.529 40.000 0.00 0.00 0.00 3.51
27 28 5.388944 CATCAGTAGCTTTTTCTTGTCAGC 58.611 41.667 0.00 0.00 0.00 4.26
28 29 4.708177 TCAGTAGCTTTTTCTTGTCAGCT 58.292 39.130 0.00 0.00 44.83 4.24
29 30 4.512944 TCAGTAGCTTTTTCTTGTCAGCTG 59.487 41.667 7.63 7.63 42.66 4.24
30 31 4.512944 CAGTAGCTTTTTCTTGTCAGCTGA 59.487 41.667 13.74 13.74 42.66 4.26
31 32 3.978718 AGCTTTTTCTTGTCAGCTGAC 57.021 42.857 35.04 35.04 41.17 3.51
40 41 3.704381 GTCAGCTGACACGACTAGG 57.296 57.895 36.23 0.00 44.18 3.02
41 42 0.882474 GTCAGCTGACACGACTAGGT 59.118 55.000 36.23 0.00 44.18 3.08
42 43 0.881796 TCAGCTGACACGACTAGGTG 59.118 55.000 13.74 0.00 43.54 4.00
43 44 0.109086 CAGCTGACACGACTAGGTGG 60.109 60.000 8.42 0.00 42.23 4.61
44 45 1.446272 GCTGACACGACTAGGTGGC 60.446 63.158 4.45 1.58 46.42 5.01
50 51 3.129502 CGACTAGGTGGCGGACGA 61.130 66.667 0.00 0.00 44.96 4.20
51 52 2.478890 CGACTAGGTGGCGGACGAT 61.479 63.158 0.00 0.00 44.96 3.73
52 53 1.814527 GACTAGGTGGCGGACGATT 59.185 57.895 0.00 0.00 0.00 3.34
53 54 0.175073 GACTAGGTGGCGGACGATTT 59.825 55.000 0.00 0.00 0.00 2.17
54 55 0.611714 ACTAGGTGGCGGACGATTTT 59.388 50.000 0.00 0.00 0.00 1.82
55 56 1.006832 CTAGGTGGCGGACGATTTTG 58.993 55.000 0.00 0.00 0.00 2.44
56 57 0.322322 TAGGTGGCGGACGATTTTGT 59.678 50.000 0.00 0.00 0.00 2.83
57 58 0.536460 AGGTGGCGGACGATTTTGTT 60.536 50.000 0.00 0.00 0.00 2.83
58 59 0.109919 GGTGGCGGACGATTTTGTTC 60.110 55.000 0.00 0.00 0.00 3.18
59 60 0.589223 GTGGCGGACGATTTTGTTCA 59.411 50.000 0.00 0.00 0.00 3.18
60 61 0.589223 TGGCGGACGATTTTGTTCAC 59.411 50.000 0.00 0.00 0.00 3.18
61 62 0.872388 GGCGGACGATTTTGTTCACT 59.128 50.000 0.00 0.00 0.00 3.41
62 63 1.399727 GGCGGACGATTTTGTTCACTG 60.400 52.381 0.00 0.00 0.00 3.66
63 64 1.399727 GCGGACGATTTTGTTCACTGG 60.400 52.381 0.00 0.00 0.00 4.00
64 65 1.871039 CGGACGATTTTGTTCACTGGT 59.129 47.619 0.00 0.00 0.00 4.00
65 66 2.289547 CGGACGATTTTGTTCACTGGTT 59.710 45.455 0.00 0.00 0.00 3.67
66 67 3.628017 GGACGATTTTGTTCACTGGTTG 58.372 45.455 0.00 0.00 0.00 3.77
67 68 3.314080 GGACGATTTTGTTCACTGGTTGA 59.686 43.478 0.00 0.00 0.00 3.18
68 69 4.023193 GGACGATTTTGTTCACTGGTTGAT 60.023 41.667 0.00 0.00 32.84 2.57
69 70 5.507315 GGACGATTTTGTTCACTGGTTGATT 60.507 40.000 0.00 0.00 32.84 2.57
70 71 6.293735 GGACGATTTTGTTCACTGGTTGATTA 60.294 38.462 0.00 0.00 32.84 1.75
71 72 7.214467 ACGATTTTGTTCACTGGTTGATTAT 57.786 32.000 0.00 0.00 32.84 1.28
72 73 7.657336 ACGATTTTGTTCACTGGTTGATTATT 58.343 30.769 0.00 0.00 32.84 1.40
73 74 7.594758 ACGATTTTGTTCACTGGTTGATTATTG 59.405 33.333 0.00 0.00 32.84 1.90
74 75 7.410728 CGATTTTGTTCACTGGTTGATTATTGC 60.411 37.037 0.00 0.00 32.84 3.56
75 76 4.418013 TGTTCACTGGTTGATTATTGCG 57.582 40.909 0.00 0.00 32.84 4.85
76 77 3.171277 GTTCACTGGTTGATTATTGCGC 58.829 45.455 0.00 0.00 32.84 6.09
77 78 2.710377 TCACTGGTTGATTATTGCGCT 58.290 42.857 9.73 0.00 0.00 5.92
78 79 2.677836 TCACTGGTTGATTATTGCGCTC 59.322 45.455 9.73 0.00 0.00 5.03
79 80 2.017049 ACTGGTTGATTATTGCGCTCC 58.983 47.619 9.73 0.00 0.00 4.70
80 81 2.016318 CTGGTTGATTATTGCGCTCCA 58.984 47.619 9.73 2.73 0.00 3.86
81 82 2.620115 CTGGTTGATTATTGCGCTCCAT 59.380 45.455 9.73 0.18 0.00 3.41
82 83 2.358582 TGGTTGATTATTGCGCTCCATG 59.641 45.455 9.73 0.00 0.00 3.66
83 84 2.287788 GGTTGATTATTGCGCTCCATGG 60.288 50.000 9.73 4.97 0.00 3.66
84 85 2.346766 TGATTATTGCGCTCCATGGT 57.653 45.000 12.58 0.00 0.00 3.55
85 86 2.653726 TGATTATTGCGCTCCATGGTT 58.346 42.857 12.58 0.00 0.00 3.67
86 87 3.023119 TGATTATTGCGCTCCATGGTTT 58.977 40.909 12.58 0.00 0.00 3.27
87 88 2.937469 TTATTGCGCTCCATGGTTTG 57.063 45.000 12.58 4.75 0.00 2.93
89 90 0.899717 ATTGCGCTCCATGGTTTGGT 60.900 50.000 12.58 0.00 46.52 3.67
90 91 1.112315 TTGCGCTCCATGGTTTGGTT 61.112 50.000 12.58 0.00 46.52 3.67
91 92 1.212751 GCGCTCCATGGTTTGGTTC 59.787 57.895 12.58 0.00 46.52 3.62
92 93 1.501741 CGCTCCATGGTTTGGTTCG 59.498 57.895 12.58 2.51 46.52 3.95
93 94 1.234615 CGCTCCATGGTTTGGTTCGT 61.235 55.000 12.58 0.00 46.52 3.85
94 95 0.521735 GCTCCATGGTTTGGTTCGTC 59.478 55.000 12.58 0.00 46.52 4.20
95 96 1.890876 CTCCATGGTTTGGTTCGTCA 58.109 50.000 12.58 0.00 46.52 4.35
96 97 1.535462 CTCCATGGTTTGGTTCGTCAC 59.465 52.381 12.58 0.00 46.52 3.67
97 98 1.134068 TCCATGGTTTGGTTCGTCACA 60.134 47.619 12.58 0.00 46.52 3.58
98 99 1.885887 CCATGGTTTGGTTCGTCACAT 59.114 47.619 2.57 0.00 40.99 3.21
99 100 2.351641 CCATGGTTTGGTTCGTCACATG 60.352 50.000 2.57 0.00 40.99 3.21
100 101 0.665835 TGGTTTGGTTCGTCACATGC 59.334 50.000 0.00 0.00 0.00 4.06
101 102 0.951558 GGTTTGGTTCGTCACATGCT 59.048 50.000 0.00 0.00 0.00 3.79
102 103 1.069227 GGTTTGGTTCGTCACATGCTC 60.069 52.381 0.00 0.00 0.00 4.26
103 104 1.069227 GTTTGGTTCGTCACATGCTCC 60.069 52.381 0.00 0.00 0.00 4.70
104 105 0.605319 TTGGTTCGTCACATGCTCCC 60.605 55.000 0.00 0.00 0.00 4.30
105 106 1.296715 GGTTCGTCACATGCTCCCT 59.703 57.895 0.00 0.00 0.00 4.20
106 107 1.021390 GGTTCGTCACATGCTCCCTG 61.021 60.000 0.00 0.00 0.00 4.45
107 108 0.320771 GTTCGTCACATGCTCCCTGT 60.321 55.000 0.00 0.00 0.00 4.00
108 109 0.037326 TTCGTCACATGCTCCCTGTC 60.037 55.000 0.00 0.00 0.00 3.51
109 110 1.184970 TCGTCACATGCTCCCTGTCA 61.185 55.000 0.00 0.00 0.00 3.58
110 111 0.107993 CGTCACATGCTCCCTGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
111 112 1.376543 GTCACATGCTCCCTGTCATG 58.623 55.000 0.00 0.00 44.08 3.07
112 113 1.065926 GTCACATGCTCCCTGTCATGA 60.066 52.381 8.93 0.00 41.82 3.07
113 114 1.065926 TCACATGCTCCCTGTCATGAC 60.066 52.381 19.27 19.27 41.82 3.06
114 115 0.254178 ACATGCTCCCTGTCATGACC 59.746 55.000 22.85 6.97 41.82 4.02
115 116 0.465097 CATGCTCCCTGTCATGACCC 60.465 60.000 22.85 0.00 41.82 4.46
116 117 0.915872 ATGCTCCCTGTCATGACCCA 60.916 55.000 22.85 10.34 0.00 4.51
117 118 1.133181 TGCTCCCTGTCATGACCCAA 61.133 55.000 22.85 3.75 0.00 4.12
118 119 0.393537 GCTCCCTGTCATGACCCAAG 60.394 60.000 22.85 13.34 0.00 3.61
119 120 1.279496 CTCCCTGTCATGACCCAAGA 58.721 55.000 22.85 12.87 0.00 3.02
120 121 1.209019 CTCCCTGTCATGACCCAAGAG 59.791 57.143 22.85 17.73 0.00 2.85
121 122 0.254178 CCCTGTCATGACCCAAGAGG 59.746 60.000 22.85 20.16 43.78 3.69
133 134 2.706339 CCAAGAGGTCATGGGAGAAG 57.294 55.000 0.00 0.00 31.48 2.85
134 135 2.191400 CCAAGAGGTCATGGGAGAAGA 58.809 52.381 0.00 0.00 31.48 2.87
135 136 2.170187 CCAAGAGGTCATGGGAGAAGAG 59.830 54.545 0.00 0.00 31.48 2.85
136 137 1.494960 AGAGGTCATGGGAGAAGAGC 58.505 55.000 0.00 0.00 0.00 4.09
137 138 1.008206 AGAGGTCATGGGAGAAGAGCT 59.992 52.381 0.00 0.00 42.24 4.09
138 139 1.412343 GAGGTCATGGGAGAAGAGCTC 59.588 57.143 5.27 5.27 45.77 4.09
146 147 1.223211 GAGAAGAGCTCCCCCAAGC 59.777 63.158 10.93 0.00 42.82 4.01
153 154 4.697756 CTCCCCCAAGCGCGTGAA 62.698 66.667 25.23 6.24 0.00 3.18
154 155 4.697756 TCCCCCAAGCGCGTGAAG 62.698 66.667 25.23 14.80 0.00 3.02
157 158 3.726517 CCCAAGCGCGTGAAGGTG 61.727 66.667 25.23 7.22 0.00 4.00
158 159 2.664851 CCAAGCGCGTGAAGGTGA 60.665 61.111 25.23 0.00 0.00 4.02
159 160 2.250939 CCAAGCGCGTGAAGGTGAA 61.251 57.895 25.23 0.00 0.00 3.18
160 161 1.205064 CAAGCGCGTGAAGGTGAAG 59.795 57.895 19.03 0.00 0.00 3.02
161 162 1.069090 AAGCGCGTGAAGGTGAAGA 59.931 52.632 8.43 0.00 0.00 2.87
162 163 0.320771 AAGCGCGTGAAGGTGAAGAT 60.321 50.000 8.43 0.00 0.00 2.40
163 164 0.737715 AGCGCGTGAAGGTGAAGATC 60.738 55.000 8.43 0.00 0.00 2.75
164 165 1.696832 GCGCGTGAAGGTGAAGATCC 61.697 60.000 8.43 0.00 0.00 3.36
165 166 0.108615 CGCGTGAAGGTGAAGATCCT 60.109 55.000 0.00 0.00 36.81 3.24
166 167 1.673033 CGCGTGAAGGTGAAGATCCTT 60.673 52.381 0.00 0.00 46.44 3.36
171 172 2.770164 AAGGTGAAGATCCTTCCACG 57.230 50.000 4.48 0.00 40.80 4.94
172 173 0.905357 AGGTGAAGATCCTTCCACGG 59.095 55.000 4.48 0.00 30.18 4.94
173 174 0.613777 GGTGAAGATCCTTCCACGGT 59.386 55.000 4.48 0.00 0.00 4.83
174 175 1.829222 GGTGAAGATCCTTCCACGGTA 59.171 52.381 4.48 0.00 0.00 4.02
175 176 2.235402 GGTGAAGATCCTTCCACGGTAA 59.765 50.000 4.48 0.00 0.00 2.85
176 177 3.307199 GGTGAAGATCCTTCCACGGTAAA 60.307 47.826 4.48 0.00 0.00 2.01
177 178 4.320870 GTGAAGATCCTTCCACGGTAAAA 58.679 43.478 4.48 0.00 0.00 1.52
178 179 4.153655 GTGAAGATCCTTCCACGGTAAAAC 59.846 45.833 4.48 0.00 0.00 2.43
179 180 4.202377 TGAAGATCCTTCCACGGTAAAACA 60.202 41.667 4.48 0.00 0.00 2.83
180 181 4.360951 AGATCCTTCCACGGTAAAACAA 57.639 40.909 0.00 0.00 0.00 2.83
181 182 4.324267 AGATCCTTCCACGGTAAAACAAG 58.676 43.478 0.00 0.00 0.00 3.16
182 183 2.853705 TCCTTCCACGGTAAAACAAGG 58.146 47.619 0.00 0.00 33.05 3.61
183 184 2.173143 TCCTTCCACGGTAAAACAAGGT 59.827 45.455 0.00 0.00 33.45 3.50
184 185 2.953648 CCTTCCACGGTAAAACAAGGTT 59.046 45.455 0.00 0.00 0.00 3.50
185 186 3.243267 CCTTCCACGGTAAAACAAGGTTG 60.243 47.826 0.00 0.00 0.00 3.77
186 187 2.299521 TCCACGGTAAAACAAGGTTGG 58.700 47.619 0.00 0.00 0.00 3.77
187 188 2.025898 CCACGGTAAAACAAGGTTGGT 58.974 47.619 0.00 0.00 0.00 3.67
188 189 2.223618 CCACGGTAAAACAAGGTTGGTG 60.224 50.000 0.00 0.00 0.00 4.17
189 190 1.406180 ACGGTAAAACAAGGTTGGTGC 59.594 47.619 0.00 0.00 0.00 5.01
190 191 1.598430 CGGTAAAACAAGGTTGGTGCG 60.598 52.381 0.00 0.00 0.00 5.34
191 192 1.269361 GGTAAAACAAGGTTGGTGCGG 60.269 52.381 0.00 0.00 0.00 5.69
192 193 0.386113 TAAAACAAGGTTGGTGCGGC 59.614 50.000 0.00 0.00 0.00 6.53
193 194 2.304901 AAAACAAGGTTGGTGCGGCC 62.305 55.000 0.00 0.00 37.90 6.13
199 200 4.947147 GTTGGTGCGGCCCACTCA 62.947 66.667 19.69 14.35 44.08 3.41
200 201 3.965258 TTGGTGCGGCCCACTCAT 61.965 61.111 19.69 0.00 44.08 2.90
201 202 4.720902 TGGTGCGGCCCACTCATG 62.721 66.667 19.69 0.00 44.08 3.07
202 203 4.722700 GGTGCGGCCCACTCATGT 62.723 66.667 19.69 0.00 44.08 3.21
203 204 3.127533 GTGCGGCCCACTCATGTC 61.128 66.667 14.93 0.00 41.35 3.06
204 205 3.635191 TGCGGCCCACTCATGTCA 61.635 61.111 0.00 0.00 0.00 3.58
205 206 2.821366 GCGGCCCACTCATGTCAG 60.821 66.667 0.00 0.00 0.00 3.51
206 207 2.821366 CGGCCCACTCATGTCAGC 60.821 66.667 0.00 0.00 0.00 4.26
207 208 2.673523 GGCCCACTCATGTCAGCT 59.326 61.111 0.00 0.00 0.00 4.24
208 209 1.748122 GGCCCACTCATGTCAGCTG 60.748 63.158 7.63 7.63 0.00 4.24
209 210 1.748122 GCCCACTCATGTCAGCTGG 60.748 63.158 15.13 0.00 0.00 4.85
210 211 1.681666 CCCACTCATGTCAGCTGGT 59.318 57.895 15.13 0.00 0.00 4.00
211 212 0.675837 CCCACTCATGTCAGCTGGTG 60.676 60.000 15.13 12.37 0.00 4.17
212 213 0.322648 CCACTCATGTCAGCTGGTGA 59.677 55.000 15.13 14.39 0.00 4.02
213 214 1.675116 CCACTCATGTCAGCTGGTGAG 60.675 57.143 27.85 27.85 42.80 3.51
214 215 0.612229 ACTCATGTCAGCTGGTGAGG 59.388 55.000 30.32 20.05 41.74 3.86
215 216 0.900421 CTCATGTCAGCTGGTGAGGA 59.100 55.000 24.68 12.90 35.13 3.71
216 217 1.277273 CTCATGTCAGCTGGTGAGGAA 59.723 52.381 24.68 0.00 35.13 3.36
217 218 1.277273 TCATGTCAGCTGGTGAGGAAG 59.723 52.381 15.13 1.38 35.13 3.46
218 219 0.617413 ATGTCAGCTGGTGAGGAAGG 59.383 55.000 15.13 0.00 35.13 3.46
219 220 0.471780 TGTCAGCTGGTGAGGAAGGA 60.472 55.000 15.13 0.00 35.13 3.36
220 221 0.248843 GTCAGCTGGTGAGGAAGGAG 59.751 60.000 15.13 0.00 35.13 3.69
221 222 1.078567 CAGCTGGTGAGGAAGGAGC 60.079 63.158 5.57 0.00 0.00 4.70
222 223 1.537397 AGCTGGTGAGGAAGGAGCA 60.537 57.895 0.00 0.00 31.80 4.26
223 224 1.130054 AGCTGGTGAGGAAGGAGCAA 61.130 55.000 0.00 0.00 31.80 3.91
224 225 0.034670 GCTGGTGAGGAAGGAGCAAT 60.035 55.000 0.00 0.00 0.00 3.56
225 226 1.615384 GCTGGTGAGGAAGGAGCAATT 60.615 52.381 0.00 0.00 0.00 2.32
226 227 2.800250 CTGGTGAGGAAGGAGCAATTT 58.200 47.619 0.00 0.00 0.00 1.82
227 228 3.160269 CTGGTGAGGAAGGAGCAATTTT 58.840 45.455 0.00 0.00 0.00 1.82
228 229 2.892852 TGGTGAGGAAGGAGCAATTTTG 59.107 45.455 0.00 0.00 0.00 2.44
241 242 3.855689 CAATTTTGCAGATTCCTCGGT 57.144 42.857 0.00 0.00 0.00 4.69
242 243 3.504863 CAATTTTGCAGATTCCTCGGTG 58.495 45.455 0.00 0.00 0.00 4.94
243 244 1.533625 TTTTGCAGATTCCTCGGTGG 58.466 50.000 0.00 0.00 37.10 4.61
244 245 0.690192 TTTGCAGATTCCTCGGTGGA 59.310 50.000 0.00 0.00 44.51 4.02
251 252 3.377656 TCCTCGGTGGAGAAGCAC 58.622 61.111 0.00 0.00 43.27 4.40
252 253 2.266055 CCTCGGTGGAGAAGCACC 59.734 66.667 0.00 0.00 43.27 5.01
253 254 2.583441 CCTCGGTGGAGAAGCACCA 61.583 63.158 0.00 0.00 43.27 4.17
257 258 2.741092 GTGGAGAAGCACCACGGA 59.259 61.111 0.00 0.00 46.15 4.69
258 259 1.296715 GTGGAGAAGCACCACGGAT 59.703 57.895 0.00 0.00 46.15 4.18
259 260 1.021390 GTGGAGAAGCACCACGGATG 61.021 60.000 0.00 0.00 46.15 3.51
260 261 1.191489 TGGAGAAGCACCACGGATGA 61.191 55.000 0.00 0.00 32.03 2.92
261 262 0.036388 GGAGAAGCACCACGGATGAA 60.036 55.000 0.00 0.00 0.00 2.57
262 263 1.363744 GAGAAGCACCACGGATGAAG 58.636 55.000 0.00 0.00 0.00 3.02
263 264 0.976641 AGAAGCACCACGGATGAAGA 59.023 50.000 0.00 0.00 0.00 2.87
264 265 1.079503 GAAGCACCACGGATGAAGAC 58.920 55.000 0.00 0.00 0.00 3.01
265 266 0.321653 AAGCACCACGGATGAAGACC 60.322 55.000 0.00 0.00 0.00 3.85
266 267 1.003839 GCACCACGGATGAAGACCA 60.004 57.895 0.00 0.00 0.00 4.02
267 268 0.605319 GCACCACGGATGAAGACCAA 60.605 55.000 0.00 0.00 0.00 3.67
268 269 1.890876 CACCACGGATGAAGACCAAA 58.109 50.000 0.00 0.00 0.00 3.28
269 270 2.436417 CACCACGGATGAAGACCAAAT 58.564 47.619 0.00 0.00 0.00 2.32
270 271 2.162208 CACCACGGATGAAGACCAAATG 59.838 50.000 0.00 0.00 0.00 2.32
271 272 2.039746 ACCACGGATGAAGACCAAATGA 59.960 45.455 0.00 0.00 0.00 2.57
272 273 3.282021 CCACGGATGAAGACCAAATGAT 58.718 45.455 0.00 0.00 0.00 2.45
273 274 3.065786 CCACGGATGAAGACCAAATGATG 59.934 47.826 0.00 0.00 0.00 3.07
274 275 3.940852 CACGGATGAAGACCAAATGATGA 59.059 43.478 0.00 0.00 0.00 2.92
275 276 4.577693 CACGGATGAAGACCAAATGATGAT 59.422 41.667 0.00 0.00 0.00 2.45
276 277 4.818546 ACGGATGAAGACCAAATGATGATC 59.181 41.667 0.00 0.00 0.00 2.92
277 278 5.061853 CGGATGAAGACCAAATGATGATCT 58.938 41.667 0.00 0.00 0.00 2.75
278 279 5.530171 CGGATGAAGACCAAATGATGATCTT 59.470 40.000 0.00 0.00 32.36 2.40
279 280 6.707608 CGGATGAAGACCAAATGATGATCTTA 59.292 38.462 0.00 0.00 29.85 2.10
280 281 7.095313 CGGATGAAGACCAAATGATGATCTTAG 60.095 40.741 0.00 0.00 29.85 2.18
281 282 7.935755 GGATGAAGACCAAATGATGATCTTAGA 59.064 37.037 0.00 0.00 29.85 2.10
282 283 8.674263 ATGAAGACCAAATGATGATCTTAGAC 57.326 34.615 0.00 0.00 29.85 2.59
283 284 6.758416 TGAAGACCAAATGATGATCTTAGACG 59.242 38.462 0.00 0.00 29.85 4.18
284 285 5.605534 AGACCAAATGATGATCTTAGACGG 58.394 41.667 0.00 0.00 0.00 4.79
285 286 4.130118 ACCAAATGATGATCTTAGACGGC 58.870 43.478 0.00 0.00 0.00 5.68
286 287 4.141620 ACCAAATGATGATCTTAGACGGCT 60.142 41.667 0.00 0.00 0.00 5.52
287 288 4.450419 CCAAATGATGATCTTAGACGGCTC 59.550 45.833 0.00 0.00 0.00 4.70
288 289 3.951775 ATGATGATCTTAGACGGCTCC 57.048 47.619 0.00 0.00 0.00 4.70
289 290 1.964223 TGATGATCTTAGACGGCTCCC 59.036 52.381 0.00 0.00 0.00 4.30
290 291 2.243810 GATGATCTTAGACGGCTCCCT 58.756 52.381 0.00 0.00 0.00 4.20
291 292 1.403814 TGATCTTAGACGGCTCCCTG 58.596 55.000 0.00 0.00 0.00 4.45
292 293 1.342076 TGATCTTAGACGGCTCCCTGT 60.342 52.381 0.00 0.00 0.00 4.00
293 294 2.092049 TGATCTTAGACGGCTCCCTGTA 60.092 50.000 0.00 0.00 0.00 2.74
294 295 2.750141 TCTTAGACGGCTCCCTGTAT 57.250 50.000 0.00 0.00 0.00 2.29
295 296 2.307768 TCTTAGACGGCTCCCTGTATG 58.692 52.381 0.00 0.00 0.00 2.39
296 297 2.032620 CTTAGACGGCTCCCTGTATGT 58.967 52.381 0.00 0.00 0.00 2.29
297 298 1.688772 TAGACGGCTCCCTGTATGTC 58.311 55.000 0.00 0.00 0.00 3.06
298 299 1.043673 AGACGGCTCCCTGTATGTCC 61.044 60.000 0.00 0.00 0.00 4.02
299 300 1.305802 ACGGCTCCCTGTATGTCCA 60.306 57.895 0.00 0.00 0.00 4.02
300 301 1.144057 CGGCTCCCTGTATGTCCAC 59.856 63.158 0.00 0.00 0.00 4.02
301 302 1.144057 GGCTCCCTGTATGTCCACG 59.856 63.158 0.00 0.00 0.00 4.94
302 303 1.144057 GCTCCCTGTATGTCCACGG 59.856 63.158 0.00 0.00 0.00 4.94
303 304 1.823295 CTCCCTGTATGTCCACGGG 59.177 63.158 0.00 0.00 43.57 5.28
304 305 0.686441 CTCCCTGTATGTCCACGGGA 60.686 60.000 2.61 0.00 46.39 5.14
305 306 0.031515 TCCCTGTATGTCCACGGGAT 60.032 55.000 2.61 0.00 46.39 3.85
306 307 0.393077 CCCTGTATGTCCACGGGATC 59.607 60.000 2.61 0.00 46.39 3.36
307 308 1.414158 CCTGTATGTCCACGGGATCT 58.586 55.000 0.00 0.00 46.39 2.75
308 309 1.069204 CCTGTATGTCCACGGGATCTG 59.931 57.143 0.00 0.00 46.39 2.90
309 310 0.464036 TGTATGTCCACGGGATCTGC 59.536 55.000 0.00 0.00 32.73 4.26
310 311 0.464036 GTATGTCCACGGGATCTGCA 59.536 55.000 0.00 0.00 32.73 4.41
311 312 1.070758 GTATGTCCACGGGATCTGCAT 59.929 52.381 0.00 0.00 32.73 3.96
312 313 0.179037 ATGTCCACGGGATCTGCATG 60.179 55.000 0.00 0.00 32.73 4.06
313 314 1.524621 GTCCACGGGATCTGCATGG 60.525 63.158 0.00 0.00 32.73 3.66
314 315 2.203252 CCACGGGATCTGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
315 316 2.203252 CACGGGATCTGCATGGGG 60.203 66.667 0.00 0.00 0.00 4.96
316 317 3.492353 ACGGGATCTGCATGGGGG 61.492 66.667 0.00 0.00 0.00 5.40
317 318 4.962836 CGGGATCTGCATGGGGGC 62.963 72.222 0.00 0.00 0.00 5.80
318 319 3.824425 GGGATCTGCATGGGGGCA 61.824 66.667 0.00 0.00 42.53 5.36
324 325 3.746436 TGCATGGGGGCAGCTGAT 61.746 61.111 20.43 0.00 39.25 2.90
325 326 3.224324 GCATGGGGGCAGCTGATG 61.224 66.667 20.43 12.89 0.00 3.07
326 327 2.520982 CATGGGGGCAGCTGATGG 60.521 66.667 20.43 0.00 0.00 3.51
327 328 3.829226 ATGGGGGCAGCTGATGGG 61.829 66.667 20.43 0.00 0.00 4.00
329 330 4.828296 GGGGGCAGCTGATGGGTG 62.828 72.222 20.43 0.00 45.31 4.61
330 331 4.828296 GGGGCAGCTGATGGGTGG 62.828 72.222 20.43 0.00 43.02 4.61
331 332 3.731728 GGGCAGCTGATGGGTGGA 61.732 66.667 20.43 0.00 43.02 4.02
332 333 2.356278 GGCAGCTGATGGGTGGAA 59.644 61.111 20.43 0.00 43.02 3.53
333 334 1.304381 GGCAGCTGATGGGTGGAAA 60.304 57.895 20.43 0.00 43.02 3.13
334 335 1.318158 GGCAGCTGATGGGTGGAAAG 61.318 60.000 20.43 0.00 43.02 2.62
335 336 1.318158 GCAGCTGATGGGTGGAAAGG 61.318 60.000 20.43 0.00 43.02 3.11
336 337 0.682209 CAGCTGATGGGTGGAAAGGG 60.682 60.000 8.42 0.00 39.52 3.95
337 338 1.142688 AGCTGATGGGTGGAAAGGGT 61.143 55.000 0.00 0.00 0.00 4.34
338 339 0.251787 GCTGATGGGTGGAAAGGGTT 60.252 55.000 0.00 0.00 0.00 4.11
339 340 1.549203 CTGATGGGTGGAAAGGGTTG 58.451 55.000 0.00 0.00 0.00 3.77
340 341 0.541764 TGATGGGTGGAAAGGGTTGC 60.542 55.000 0.00 0.00 0.00 4.17
341 342 1.595093 GATGGGTGGAAAGGGTTGCG 61.595 60.000 0.00 0.00 0.00 4.85
342 343 2.989253 GGGTGGAAAGGGTTGCGG 60.989 66.667 0.00 0.00 0.00 5.69
343 344 2.114411 GGTGGAAAGGGTTGCGGA 59.886 61.111 0.00 0.00 0.00 5.54
344 345 1.971695 GGTGGAAAGGGTTGCGGAG 60.972 63.158 0.00 0.00 0.00 4.63
345 346 1.971695 GTGGAAAGGGTTGCGGAGG 60.972 63.158 0.00 0.00 0.00 4.30
346 347 2.150719 TGGAAAGGGTTGCGGAGGA 61.151 57.895 0.00 0.00 0.00 3.71
347 348 1.074248 GGAAAGGGTTGCGGAGGAA 59.926 57.895 0.00 0.00 33.60 3.36
348 349 0.323451 GGAAAGGGTTGCGGAGGAAT 60.323 55.000 0.00 0.00 41.93 3.01
349 350 1.064979 GGAAAGGGTTGCGGAGGAATA 60.065 52.381 0.00 0.00 41.93 1.75
350 351 2.422945 GGAAAGGGTTGCGGAGGAATAT 60.423 50.000 0.00 0.00 41.93 1.28
351 352 2.348411 AAGGGTTGCGGAGGAATATG 57.652 50.000 0.00 0.00 41.93 1.78
352 353 0.179018 AGGGTTGCGGAGGAATATGC 60.179 55.000 0.00 0.00 41.93 3.14
353 354 0.465460 GGGTTGCGGAGGAATATGCA 60.465 55.000 0.00 0.00 41.93 3.96
354 355 1.609208 GGTTGCGGAGGAATATGCAT 58.391 50.000 3.79 3.79 41.93 3.96
355 356 1.537202 GGTTGCGGAGGAATATGCATC 59.463 52.381 0.19 0.00 41.93 3.91
356 357 1.537202 GTTGCGGAGGAATATGCATCC 59.463 52.381 0.19 4.11 41.93 3.51
363 364 1.905215 AGGAATATGCATCCTCCTCCG 59.095 52.381 19.30 0.00 44.01 4.63
364 365 1.625818 GGAATATGCATCCTCCTCCGT 59.374 52.381 16.35 0.00 33.98 4.69
365 366 2.354203 GGAATATGCATCCTCCTCCGTC 60.354 54.545 16.35 0.00 33.98 4.79
366 367 1.270907 ATATGCATCCTCCTCCGTCC 58.729 55.000 0.19 0.00 0.00 4.79
367 368 0.832135 TATGCATCCTCCTCCGTCCC 60.832 60.000 0.19 0.00 0.00 4.46
368 369 3.551407 GCATCCTCCTCCGTCCCC 61.551 72.222 0.00 0.00 0.00 4.81
369 370 2.041922 CATCCTCCTCCGTCCCCA 60.042 66.667 0.00 0.00 0.00 4.96
370 371 1.460305 CATCCTCCTCCGTCCCCAT 60.460 63.158 0.00 0.00 0.00 4.00
371 372 1.152226 ATCCTCCTCCGTCCCCATC 60.152 63.158 0.00 0.00 0.00 3.51
372 373 2.681273 ATCCTCCTCCGTCCCCATCC 62.681 65.000 0.00 0.00 0.00 3.51
373 374 2.283809 CTCCTCCGTCCCCATCCT 59.716 66.667 0.00 0.00 0.00 3.24
374 375 1.834822 CTCCTCCGTCCCCATCCTC 60.835 68.421 0.00 0.00 0.00 3.71
382 383 1.739750 GTCCCCATCCTCATCATCCT 58.260 55.000 0.00 0.00 0.00 3.24
390 391 0.475906 CCTCATCATCCTCCCCAACC 59.524 60.000 0.00 0.00 0.00 3.77
393 394 0.475906 CATCATCCTCCCCAACCTCC 59.524 60.000 0.00 0.00 0.00 4.30
410 411 0.679002 TCCGGGTCGTGGTAGAAGAG 60.679 60.000 0.00 0.00 0.00 2.85
439 440 3.207669 CGGAAGAGCCATGGCAGC 61.208 66.667 37.18 27.41 44.88 5.25
508 509 4.680237 CGAGGTTGAGCCACGGCA 62.680 66.667 11.35 0.00 45.55 5.69
511 512 4.120331 GGTTGAGCCACGGCATGC 62.120 66.667 9.90 9.90 44.88 4.06
528 529 2.667536 CTGCCTCGCTGTTGCTGT 60.668 61.111 0.00 0.00 36.97 4.40
532 533 2.250485 CTCGCTGTTGCTGTGTGC 59.750 61.111 0.00 0.00 43.25 4.57
681 684 2.918712 GACCCATGGTCGATGAGATT 57.081 50.000 11.73 0.00 43.14 2.40
682 685 2.760374 GACCCATGGTCGATGAGATTC 58.240 52.381 11.73 0.00 43.14 2.52
711 714 6.017830 GGCTGGTAGATAATAACCTAGGACT 58.982 44.000 17.98 4.43 36.67 3.85
712 715 6.497606 GGCTGGTAGATAATAACCTAGGACTT 59.502 42.308 17.98 8.05 36.67 3.01
717 720 8.358895 GGTAGATAATAACCTAGGACTTGTCAC 58.641 40.741 17.98 12.20 32.72 3.67
723 726 2.904434 ACCTAGGACTTGTCACGGAAAT 59.096 45.455 17.98 0.00 0.00 2.17
798 801 1.941294 ACGTACGTTTGATGGTTGCAA 59.059 42.857 16.72 0.00 0.00 4.08
800 803 2.286477 CGTACGTTTGATGGTTGCAACA 60.286 45.455 29.55 16.61 0.00 3.33
849 910 4.765273 TCTACGTACACATTGCCATCAAT 58.235 39.130 0.00 0.00 43.31 2.57
852 913 3.755905 ACGTACACATTGCCATCAATCAA 59.244 39.130 0.00 0.00 40.74 2.57
853 914 4.097714 CGTACACATTGCCATCAATCAAC 58.902 43.478 0.00 0.00 40.74 3.18
854 915 4.142622 CGTACACATTGCCATCAATCAACT 60.143 41.667 0.00 0.00 40.74 3.16
855 916 4.445452 ACACATTGCCATCAATCAACTC 57.555 40.909 0.00 0.00 40.74 3.01
856 917 3.827876 ACACATTGCCATCAATCAACTCA 59.172 39.130 0.00 0.00 40.74 3.41
857 918 4.464951 ACACATTGCCATCAATCAACTCAT 59.535 37.500 0.00 0.00 40.74 2.90
858 919 5.041287 CACATTGCCATCAATCAACTCATC 58.959 41.667 0.00 0.00 40.74 2.92
859 920 4.098960 ACATTGCCATCAATCAACTCATCC 59.901 41.667 0.00 0.00 40.74 3.51
860 921 3.369242 TGCCATCAATCAACTCATCCA 57.631 42.857 0.00 0.00 0.00 3.41
861 922 3.699413 TGCCATCAATCAACTCATCCAA 58.301 40.909 0.00 0.00 0.00 3.53
862 923 4.283337 TGCCATCAATCAACTCATCCAAT 58.717 39.130 0.00 0.00 0.00 3.16
863 924 4.340097 TGCCATCAATCAACTCATCCAATC 59.660 41.667 0.00 0.00 0.00 2.67
864 925 4.261909 GCCATCAATCAACTCATCCAATCC 60.262 45.833 0.00 0.00 0.00 3.01
865 926 4.023450 CCATCAATCAACTCATCCAATCCG 60.023 45.833 0.00 0.00 0.00 4.18
875 936 2.098607 TCATCCAATCCGTCAGACGTAC 59.901 50.000 21.34 0.00 40.58 3.67
892 953 4.595116 ACGTACGTGATCATAGCTTGTAC 58.405 43.478 22.14 5.21 0.00 2.90
893 954 3.658079 CGTACGTGATCATAGCTTGTACG 59.342 47.826 19.24 19.24 44.74 3.67
894 955 3.777465 ACGTGATCATAGCTTGTACGT 57.223 42.857 0.00 7.12 36.98 3.57
897 958 3.482472 CGTGATCATAGCTTGTACGTCAC 59.518 47.826 0.00 0.00 33.32 3.67
898 959 4.421058 GTGATCATAGCTTGTACGTCACA 58.579 43.478 0.00 0.00 35.89 3.58
899 960 4.265556 GTGATCATAGCTTGTACGTCACAC 59.734 45.833 0.00 0.00 36.69 3.82
900 961 3.926821 TCATAGCTTGTACGTCACACA 57.073 42.857 0.00 0.00 36.69 3.72
901 962 4.450082 TCATAGCTTGTACGTCACACAT 57.550 40.909 0.00 0.00 36.69 3.21
902 963 4.816392 TCATAGCTTGTACGTCACACATT 58.184 39.130 0.00 0.00 36.69 2.71
903 964 4.625311 TCATAGCTTGTACGTCACACATTG 59.375 41.667 0.00 0.00 36.69 2.82
904 965 1.531149 AGCTTGTACGTCACACATTGC 59.469 47.619 0.00 0.00 36.69 3.56
905 966 1.399727 GCTTGTACGTCACACATTGCC 60.400 52.381 0.00 0.00 36.69 4.52
906 967 1.870402 CTTGTACGTCACACATTGCCA 59.130 47.619 0.00 0.00 36.69 4.92
907 968 2.177394 TGTACGTCACACATTGCCAT 57.823 45.000 0.00 0.00 30.04 4.40
908 969 2.073056 TGTACGTCACACATTGCCATC 58.927 47.619 0.00 0.00 30.04 3.51
909 970 2.073056 GTACGTCACACATTGCCATCA 58.927 47.619 0.00 0.00 0.00 3.07
910 971 1.603456 ACGTCACACATTGCCATCAA 58.397 45.000 0.00 0.00 36.51 2.57
1017 1078 1.278985 GATATGGGGATCGTGGATGCA 59.721 52.381 0.00 0.00 31.96 3.96
1021 1082 1.656441 GGGATCGTGGATGCATTGC 59.344 57.895 0.00 0.46 31.96 3.56
1034 1095 1.436195 GCATTGCTTACATCGGCCGA 61.436 55.000 33.12 33.12 0.00 5.54
1098 1159 3.242220 CGGAATTCATCAGCGACAAGAAG 60.242 47.826 7.93 0.00 0.00 2.85
1447 1513 8.687242 TGCATGGATTATTATTTTTAACCACGA 58.313 29.630 0.00 0.00 0.00 4.35
1514 1580 8.154649 TCAACTCATTCTTGTACTTTTCCTTC 57.845 34.615 0.00 0.00 0.00 3.46
1562 2193 7.391554 TGTCTGCATGCCCTTTATATAATCTTC 59.608 37.037 16.68 0.00 0.00 2.87
1647 2280 4.998788 ACTCTTGTTTTGGCTGAGTTTTC 58.001 39.130 0.00 0.00 34.78 2.29
1652 2285 5.659440 TGTTTTGGCTGAGTTTTCTTTCT 57.341 34.783 0.00 0.00 0.00 2.52
1653 2286 6.767524 TGTTTTGGCTGAGTTTTCTTTCTA 57.232 33.333 0.00 0.00 0.00 2.10
1729 2362 2.076863 AGCCTTCGACAGTATTGCAAC 58.923 47.619 0.00 0.00 0.00 4.17
1833 2473 2.183300 CGCAACCTCCGATTCCGA 59.817 61.111 0.00 0.00 38.22 4.55
1849 2489 2.422303 CGAGGTTATCGCCCACCTA 58.578 57.895 0.00 0.00 43.94 3.08
1900 2540 2.034878 TCTCACCGCTGATGCTAGATT 58.965 47.619 0.00 0.00 36.97 2.40
1916 2556 1.910580 GATTCCAGACCCCCTTCGCA 61.911 60.000 0.00 0.00 0.00 5.10
1994 2957 3.035363 TCCAACATACCTCGCTTGGATA 58.965 45.455 0.00 0.00 37.78 2.59
2000 2963 1.271840 ACCTCGCTTGGATAAGGGCA 61.272 55.000 0.00 0.00 44.12 5.36
2025 2988 2.027169 GGACCGGAACCTATCGCG 59.973 66.667 9.46 0.00 0.00 5.87
2097 3060 5.782047 CATGAGGAGAAGCTAGGTTGATAG 58.218 45.833 12.82 0.00 0.00 2.08
2125 3088 4.458397 CATGGATGGTGATGTAGCTTTCT 58.542 43.478 0.00 0.00 0.00 2.52
2273 3237 6.096036 TCCACACAATAAACAGTTGTTTGTG 58.904 36.000 25.79 25.79 46.56 3.33
2277 3241 7.542477 CACACAATAAACAGTTGTTTGTGGTTA 59.458 33.333 28.34 7.15 46.56 2.85
2278 3242 8.088981 ACACAATAAACAGTTGTTTGTGGTTAA 58.911 29.630 28.34 5.39 46.56 2.01
2279 3243 8.926710 CACAATAAACAGTTGTTTGTGGTTAAA 58.073 29.630 22.61 0.00 46.56 1.52
2280 3244 8.927721 ACAATAAACAGTTGTTTGTGGTTAAAC 58.072 29.630 17.94 0.00 46.56 2.01
2281 3245 8.926710 CAATAAACAGTTGTTTGTGGTTAAACA 58.073 29.630 17.94 0.00 46.56 2.83
2282 3246 6.772770 AAACAGTTGTTTGTGGTTAAACAC 57.227 33.333 16.98 16.98 46.73 3.32
2283 3247 4.477780 ACAGTTGTTTGTGGTTAAACACG 58.522 39.130 18.44 4.45 46.73 4.49
2284 3248 4.023021 ACAGTTGTTTGTGGTTAAACACGT 60.023 37.500 18.44 5.07 46.73 4.49
2335 3299 5.714333 AATATTGCAATATTATGGTCGCCCA 59.286 36.000 33.28 7.01 39.22 5.36
2336 3300 6.380846 AATATTGCAATATTATGGTCGCCCAT 59.619 34.615 33.28 12.64 41.23 4.00
2353 3317 7.363880 GGTCGCCCATTTGAATCTCTCTATATA 60.364 40.741 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.426937 TGACAAGAAAAAGCTACTGATGGTAC 59.573 38.462 0.00 0.00 0.00 3.34
1 2 6.530120 TGACAAGAAAAAGCTACTGATGGTA 58.470 36.000 0.00 0.00 0.00 3.25
2 3 5.376625 TGACAAGAAAAAGCTACTGATGGT 58.623 37.500 0.00 0.00 0.00 3.55
3 4 5.618640 GCTGACAAGAAAAAGCTACTGATGG 60.619 44.000 0.00 0.00 32.82 3.51
4 5 5.180868 AGCTGACAAGAAAAAGCTACTGATG 59.819 40.000 0.00 0.00 44.00 3.07
5 6 5.180868 CAGCTGACAAGAAAAAGCTACTGAT 59.819 40.000 8.42 0.00 44.00 2.90
6 7 4.512944 CAGCTGACAAGAAAAAGCTACTGA 59.487 41.667 8.42 0.00 44.00 3.41
7 8 4.512944 TCAGCTGACAAGAAAAAGCTACTG 59.487 41.667 13.74 0.00 44.00 2.74
8 9 4.513318 GTCAGCTGACAAGAAAAAGCTACT 59.487 41.667 36.23 0.00 44.00 2.57
9 10 4.777823 GTCAGCTGACAAGAAAAAGCTAC 58.222 43.478 36.23 9.16 44.00 3.58
11 12 3.978718 GTCAGCTGACAAGAAAAAGCT 57.021 42.857 36.23 0.00 46.70 3.74
22 23 0.882474 ACCTAGTCGTGTCAGCTGAC 59.118 55.000 35.04 35.04 44.97 3.51
23 24 0.881796 CACCTAGTCGTGTCAGCTGA 59.118 55.000 13.74 13.74 0.00 4.26
24 25 0.109086 CCACCTAGTCGTGTCAGCTG 60.109 60.000 7.63 7.63 31.47 4.24
25 26 1.878656 GCCACCTAGTCGTGTCAGCT 61.879 60.000 0.00 0.00 31.47 4.24
26 27 1.446272 GCCACCTAGTCGTGTCAGC 60.446 63.158 0.00 0.00 31.47 4.26
27 28 1.154016 CGCCACCTAGTCGTGTCAG 60.154 63.158 0.00 0.00 31.47 3.51
28 29 2.632544 CCGCCACCTAGTCGTGTCA 61.633 63.158 0.00 0.00 31.47 3.58
29 30 2.181021 CCGCCACCTAGTCGTGTC 59.819 66.667 0.00 0.00 31.47 3.67
30 31 2.282674 TCCGCCACCTAGTCGTGT 60.283 61.111 0.00 0.00 31.47 4.49
31 32 2.181021 GTCCGCCACCTAGTCGTG 59.819 66.667 0.00 0.00 0.00 4.35
32 33 3.437795 CGTCCGCCACCTAGTCGT 61.438 66.667 0.00 0.00 0.00 4.34
33 34 2.001361 AATCGTCCGCCACCTAGTCG 62.001 60.000 0.00 0.00 0.00 4.18
34 35 0.175073 AAATCGTCCGCCACCTAGTC 59.825 55.000 0.00 0.00 0.00 2.59
35 36 0.611714 AAAATCGTCCGCCACCTAGT 59.388 50.000 0.00 0.00 0.00 2.57
36 37 1.006832 CAAAATCGTCCGCCACCTAG 58.993 55.000 0.00 0.00 0.00 3.02
37 38 0.322322 ACAAAATCGTCCGCCACCTA 59.678 50.000 0.00 0.00 0.00 3.08
38 39 0.536460 AACAAAATCGTCCGCCACCT 60.536 50.000 0.00 0.00 0.00 4.00
39 40 0.109919 GAACAAAATCGTCCGCCACC 60.110 55.000 0.00 0.00 0.00 4.61
40 41 0.589223 TGAACAAAATCGTCCGCCAC 59.411 50.000 0.00 0.00 0.00 5.01
41 42 0.589223 GTGAACAAAATCGTCCGCCA 59.411 50.000 0.00 0.00 0.00 5.69
42 43 0.872388 AGTGAACAAAATCGTCCGCC 59.128 50.000 0.00 0.00 0.00 6.13
43 44 1.399727 CCAGTGAACAAAATCGTCCGC 60.400 52.381 0.00 0.00 0.00 5.54
44 45 1.871039 ACCAGTGAACAAAATCGTCCG 59.129 47.619 0.00 0.00 0.00 4.79
45 46 3.314080 TCAACCAGTGAACAAAATCGTCC 59.686 43.478 0.00 0.00 31.51 4.79
46 47 4.545823 TCAACCAGTGAACAAAATCGTC 57.454 40.909 0.00 0.00 31.51 4.20
47 48 5.514274 AATCAACCAGTGAACAAAATCGT 57.486 34.783 0.00 0.00 40.50 3.73
48 49 7.410728 GCAATAATCAACCAGTGAACAAAATCG 60.411 37.037 0.00 0.00 40.50 3.34
49 50 7.410728 CGCAATAATCAACCAGTGAACAAAATC 60.411 37.037 0.00 0.00 40.50 2.17
50 51 6.365789 CGCAATAATCAACCAGTGAACAAAAT 59.634 34.615 0.00 0.00 40.50 1.82
51 52 5.689514 CGCAATAATCAACCAGTGAACAAAA 59.310 36.000 0.00 0.00 40.50 2.44
52 53 5.218885 CGCAATAATCAACCAGTGAACAAA 58.781 37.500 0.00 0.00 40.50 2.83
53 54 4.793071 CGCAATAATCAACCAGTGAACAA 58.207 39.130 0.00 0.00 40.50 2.83
54 55 3.365868 GCGCAATAATCAACCAGTGAACA 60.366 43.478 0.30 0.00 40.50 3.18
55 56 3.119849 AGCGCAATAATCAACCAGTGAAC 60.120 43.478 11.47 0.00 40.50 3.18
56 57 3.081061 AGCGCAATAATCAACCAGTGAA 58.919 40.909 11.47 0.00 40.50 3.18
57 58 2.677836 GAGCGCAATAATCAACCAGTGA 59.322 45.455 11.47 0.00 41.67 3.41
58 59 2.223340 GGAGCGCAATAATCAACCAGTG 60.223 50.000 11.47 0.00 0.00 3.66
59 60 2.017049 GGAGCGCAATAATCAACCAGT 58.983 47.619 11.47 0.00 0.00 4.00
60 61 2.016318 TGGAGCGCAATAATCAACCAG 58.984 47.619 11.47 0.00 0.00 4.00
61 62 2.121291 TGGAGCGCAATAATCAACCA 57.879 45.000 11.47 1.78 0.00 3.67
62 63 2.287788 CCATGGAGCGCAATAATCAACC 60.288 50.000 11.47 0.00 0.00 3.77
63 64 2.358898 ACCATGGAGCGCAATAATCAAC 59.641 45.455 21.47 0.00 0.00 3.18
64 65 2.653726 ACCATGGAGCGCAATAATCAA 58.346 42.857 21.47 0.00 0.00 2.57
65 66 2.346766 ACCATGGAGCGCAATAATCA 57.653 45.000 21.47 0.00 0.00 2.57
66 67 3.374745 CAAACCATGGAGCGCAATAATC 58.625 45.455 21.47 0.00 0.00 1.75
67 68 3.441496 CAAACCATGGAGCGCAATAAT 57.559 42.857 21.47 0.00 0.00 1.28
68 69 2.937469 CAAACCATGGAGCGCAATAA 57.063 45.000 21.47 0.00 0.00 1.40
79 80 2.921912 GCATGTGACGAACCAAACCATG 60.922 50.000 0.00 0.00 0.00 3.66
80 81 1.269448 GCATGTGACGAACCAAACCAT 59.731 47.619 0.00 0.00 0.00 3.55
81 82 0.665835 GCATGTGACGAACCAAACCA 59.334 50.000 0.00 0.00 0.00 3.67
82 83 0.951558 AGCATGTGACGAACCAAACC 59.048 50.000 0.00 0.00 0.00 3.27
83 84 1.069227 GGAGCATGTGACGAACCAAAC 60.069 52.381 0.00 0.00 0.00 2.93
84 85 1.234821 GGAGCATGTGACGAACCAAA 58.765 50.000 0.00 0.00 0.00 3.28
85 86 0.605319 GGGAGCATGTGACGAACCAA 60.605 55.000 0.00 0.00 0.00 3.67
86 87 1.003839 GGGAGCATGTGACGAACCA 60.004 57.895 0.00 0.00 0.00 3.67
87 88 1.021390 CAGGGAGCATGTGACGAACC 61.021 60.000 0.00 0.00 0.00 3.62
88 89 0.320771 ACAGGGAGCATGTGACGAAC 60.321 55.000 0.00 0.00 0.00 3.95
89 90 0.037326 GACAGGGAGCATGTGACGAA 60.037 55.000 0.00 0.00 0.00 3.85
90 91 1.184970 TGACAGGGAGCATGTGACGA 61.185 55.000 0.00 0.00 0.00 4.20
91 92 0.107993 ATGACAGGGAGCATGTGACG 60.108 55.000 0.00 0.00 0.00 4.35
92 93 1.065926 TCATGACAGGGAGCATGTGAC 60.066 52.381 0.00 0.00 41.88 3.67
93 94 1.065926 GTCATGACAGGGAGCATGTGA 60.066 52.381 21.07 0.00 41.88 3.58
94 95 1.376543 GTCATGACAGGGAGCATGTG 58.623 55.000 21.07 0.00 41.88 3.21
95 96 0.254178 GGTCATGACAGGGAGCATGT 59.746 55.000 26.47 0.00 41.88 3.21
96 97 0.465097 GGGTCATGACAGGGAGCATG 60.465 60.000 26.47 0.00 42.41 4.06
97 98 0.915872 TGGGTCATGACAGGGAGCAT 60.916 55.000 26.47 0.00 33.35 3.79
98 99 1.133181 TTGGGTCATGACAGGGAGCA 61.133 55.000 26.47 1.00 33.35 4.26
99 100 0.393537 CTTGGGTCATGACAGGGAGC 60.394 60.000 26.47 8.46 0.00 4.70
100 101 1.209019 CTCTTGGGTCATGACAGGGAG 59.791 57.143 26.47 20.68 0.00 4.30
101 102 1.279496 CTCTTGGGTCATGACAGGGA 58.721 55.000 26.47 16.29 0.00 4.20
102 103 0.254178 CCTCTTGGGTCATGACAGGG 59.746 60.000 26.47 15.30 0.00 4.45
103 104 3.869623 CCTCTTGGGTCATGACAGG 57.130 57.895 26.47 19.35 0.00 4.00
114 115 2.170187 CTCTTCTCCCATGACCTCTTGG 59.830 54.545 0.00 1.01 39.94 3.61
115 116 2.419851 GCTCTTCTCCCATGACCTCTTG 60.420 54.545 0.00 0.00 0.00 3.02
116 117 1.836802 GCTCTTCTCCCATGACCTCTT 59.163 52.381 0.00 0.00 0.00 2.85
117 118 1.008206 AGCTCTTCTCCCATGACCTCT 59.992 52.381 0.00 0.00 0.00 3.69
118 119 1.412343 GAGCTCTTCTCCCATGACCTC 59.588 57.143 6.43 0.00 35.77 3.85
119 120 1.494960 GAGCTCTTCTCCCATGACCT 58.505 55.000 6.43 0.00 35.77 3.85
128 129 1.223211 GCTTGGGGGAGCTCTTCTC 59.777 63.158 14.64 7.10 39.57 2.87
129 130 2.664081 CGCTTGGGGGAGCTCTTCT 61.664 63.158 14.64 0.00 40.52 2.85
130 131 2.124942 CGCTTGGGGGAGCTCTTC 60.125 66.667 14.64 6.38 40.52 2.87
131 132 4.416738 GCGCTTGGGGGAGCTCTT 62.417 66.667 14.64 0.00 40.52 2.85
136 137 4.697756 TTCACGCGCTTGGGGGAG 62.698 66.667 14.45 0.00 39.36 4.30
137 138 4.697756 CTTCACGCGCTTGGGGGA 62.698 66.667 14.45 0.00 35.97 4.81
140 141 3.726517 CACCTTCACGCGCTTGGG 61.727 66.667 14.45 10.61 0.00 4.12
141 142 2.175184 CTTCACCTTCACGCGCTTGG 62.175 60.000 14.45 6.22 0.00 3.61
142 143 1.205064 CTTCACCTTCACGCGCTTG 59.795 57.895 5.73 7.71 0.00 4.01
143 144 0.320771 ATCTTCACCTTCACGCGCTT 60.321 50.000 5.73 0.00 0.00 4.68
144 145 0.737715 GATCTTCACCTTCACGCGCT 60.738 55.000 5.73 0.00 0.00 5.92
145 146 1.696832 GGATCTTCACCTTCACGCGC 61.697 60.000 5.73 0.00 0.00 6.86
146 147 0.108615 AGGATCTTCACCTTCACGCG 60.109 55.000 3.53 3.53 33.55 6.01
147 148 2.100605 AAGGATCTTCACCTTCACGC 57.899 50.000 0.00 0.00 43.22 5.34
153 154 0.905357 CCGTGGAAGGATCTTCACCT 59.095 55.000 9.48 0.00 39.69 4.00
154 155 0.613777 ACCGTGGAAGGATCTTCACC 59.386 55.000 9.48 0.00 34.73 4.02
155 156 3.604875 TTACCGTGGAAGGATCTTCAC 57.395 47.619 9.48 5.49 34.73 3.18
156 157 4.202377 TGTTTTACCGTGGAAGGATCTTCA 60.202 41.667 9.48 0.00 34.73 3.02
157 158 4.320870 TGTTTTACCGTGGAAGGATCTTC 58.679 43.478 0.00 0.00 34.73 2.87
158 159 4.360951 TGTTTTACCGTGGAAGGATCTT 57.639 40.909 0.00 0.00 34.73 2.40
159 160 4.324267 CTTGTTTTACCGTGGAAGGATCT 58.676 43.478 0.00 0.00 34.73 2.75
160 161 3.439129 CCTTGTTTTACCGTGGAAGGATC 59.561 47.826 0.00 0.00 33.17 3.36
161 162 3.181437 ACCTTGTTTTACCGTGGAAGGAT 60.181 43.478 0.00 0.00 35.07 3.24
162 163 2.173143 ACCTTGTTTTACCGTGGAAGGA 59.827 45.455 0.00 0.00 35.07 3.36
163 164 2.578786 ACCTTGTTTTACCGTGGAAGG 58.421 47.619 0.00 0.00 36.76 3.46
164 165 3.243267 CCAACCTTGTTTTACCGTGGAAG 60.243 47.826 0.00 0.00 0.00 3.46
165 166 2.688958 CCAACCTTGTTTTACCGTGGAA 59.311 45.455 0.00 0.00 0.00 3.53
166 167 2.299521 CCAACCTTGTTTTACCGTGGA 58.700 47.619 0.00 0.00 0.00 4.02
167 168 2.025898 ACCAACCTTGTTTTACCGTGG 58.974 47.619 0.00 0.00 0.00 4.94
168 169 2.796735 GCACCAACCTTGTTTTACCGTG 60.797 50.000 0.00 0.00 0.00 4.94
169 170 1.406180 GCACCAACCTTGTTTTACCGT 59.594 47.619 0.00 0.00 0.00 4.83
170 171 1.598430 CGCACCAACCTTGTTTTACCG 60.598 52.381 0.00 0.00 0.00 4.02
171 172 1.269361 CCGCACCAACCTTGTTTTACC 60.269 52.381 0.00 0.00 0.00 2.85
172 173 1.866471 GCCGCACCAACCTTGTTTTAC 60.866 52.381 0.00 0.00 0.00 2.01
173 174 0.386113 GCCGCACCAACCTTGTTTTA 59.614 50.000 0.00 0.00 0.00 1.52
174 175 1.142965 GCCGCACCAACCTTGTTTT 59.857 52.632 0.00 0.00 0.00 2.43
175 176 2.791868 GGCCGCACCAACCTTGTTT 61.792 57.895 0.00 0.00 38.86 2.83
176 177 3.223589 GGCCGCACCAACCTTGTT 61.224 61.111 0.00 0.00 38.86 2.83
182 183 4.947147 TGAGTGGGCCGCACCAAC 62.947 66.667 20.98 0.00 43.73 3.77
183 184 3.965258 ATGAGTGGGCCGCACCAA 61.965 61.111 20.98 9.11 43.34 3.67
184 185 4.720902 CATGAGTGGGCCGCACCA 62.721 66.667 20.98 16.60 42.05 4.17
185 186 4.722700 ACATGAGTGGGCCGCACC 62.723 66.667 20.98 11.10 37.93 5.01
186 187 3.127533 GACATGAGTGGGCCGCAC 61.128 66.667 20.98 14.25 0.00 5.34
187 188 3.610619 CTGACATGAGTGGGCCGCA 62.611 63.158 20.98 8.00 0.00 5.69
188 189 2.821366 CTGACATGAGTGGGCCGC 60.821 66.667 9.64 9.64 0.00 6.53
189 190 2.821366 GCTGACATGAGTGGGCCG 60.821 66.667 0.00 0.00 0.00 6.13
190 191 1.748122 CAGCTGACATGAGTGGGCC 60.748 63.158 8.42 0.00 0.00 5.80
191 192 1.748122 CCAGCTGACATGAGTGGGC 60.748 63.158 17.39 0.00 0.00 5.36
192 193 0.675837 CACCAGCTGACATGAGTGGG 60.676 60.000 17.39 0.00 32.13 4.61
193 194 0.322648 TCACCAGCTGACATGAGTGG 59.677 55.000 17.39 0.00 0.00 4.00
194 195 1.675116 CCTCACCAGCTGACATGAGTG 60.675 57.143 27.01 20.31 37.47 3.51
195 196 0.612229 CCTCACCAGCTGACATGAGT 59.388 55.000 27.01 11.88 37.47 3.41
196 197 0.900421 TCCTCACCAGCTGACATGAG 59.100 55.000 24.56 24.56 38.65 2.90
197 198 1.277273 CTTCCTCACCAGCTGACATGA 59.723 52.381 17.39 14.48 0.00 3.07
198 199 1.678123 CCTTCCTCACCAGCTGACATG 60.678 57.143 17.39 10.71 0.00 3.21
199 200 0.617413 CCTTCCTCACCAGCTGACAT 59.383 55.000 17.39 0.00 0.00 3.06
200 201 0.471780 TCCTTCCTCACCAGCTGACA 60.472 55.000 17.39 0.00 0.00 3.58
201 202 0.248843 CTCCTTCCTCACCAGCTGAC 59.751 60.000 17.39 0.00 0.00 3.51
202 203 1.548357 GCTCCTTCCTCACCAGCTGA 61.548 60.000 17.39 0.00 0.00 4.26
203 204 1.078567 GCTCCTTCCTCACCAGCTG 60.079 63.158 6.78 6.78 0.00 4.24
204 205 1.130054 TTGCTCCTTCCTCACCAGCT 61.130 55.000 0.00 0.00 0.00 4.24
205 206 0.034670 ATTGCTCCTTCCTCACCAGC 60.035 55.000 0.00 0.00 0.00 4.85
206 207 2.503895 AATTGCTCCTTCCTCACCAG 57.496 50.000 0.00 0.00 0.00 4.00
207 208 2.892852 CAAAATTGCTCCTTCCTCACCA 59.107 45.455 0.00 0.00 0.00 4.17
208 209 3.582714 CAAAATTGCTCCTTCCTCACC 57.417 47.619 0.00 0.00 0.00 4.02
221 222 3.504863 CACCGAGGAATCTGCAAAATTG 58.495 45.455 0.00 0.00 0.00 2.32
222 223 2.493278 CCACCGAGGAATCTGCAAAATT 59.507 45.455 0.00 0.00 41.22 1.82
223 224 2.094675 CCACCGAGGAATCTGCAAAAT 58.905 47.619 0.00 0.00 41.22 1.82
224 225 1.073125 TCCACCGAGGAATCTGCAAAA 59.927 47.619 0.00 0.00 45.65 2.44
225 226 0.690192 TCCACCGAGGAATCTGCAAA 59.310 50.000 0.00 0.00 45.65 3.68
226 227 2.371784 TCCACCGAGGAATCTGCAA 58.628 52.632 0.00 0.00 45.65 4.08
227 228 4.128580 TCCACCGAGGAATCTGCA 57.871 55.556 0.00 0.00 45.65 4.41
234 235 2.283529 GGTGCTTCTCCACCGAGGA 61.284 63.158 0.00 0.00 45.13 3.71
235 236 2.266055 GGTGCTTCTCCACCGAGG 59.734 66.667 0.00 0.00 45.13 4.63
241 242 1.191489 TCATCCGTGGTGCTTCTCCA 61.191 55.000 0.00 0.00 0.00 3.86
242 243 0.036388 TTCATCCGTGGTGCTTCTCC 60.036 55.000 0.00 0.00 0.00 3.71
243 244 1.066858 TCTTCATCCGTGGTGCTTCTC 60.067 52.381 0.00 0.00 0.00 2.87
244 245 0.976641 TCTTCATCCGTGGTGCTTCT 59.023 50.000 0.00 0.00 0.00 2.85
245 246 1.079503 GTCTTCATCCGTGGTGCTTC 58.920 55.000 0.00 0.00 0.00 3.86
246 247 0.321653 GGTCTTCATCCGTGGTGCTT 60.322 55.000 0.00 0.00 0.00 3.91
247 248 1.296715 GGTCTTCATCCGTGGTGCT 59.703 57.895 0.00 0.00 0.00 4.40
248 249 0.605319 TTGGTCTTCATCCGTGGTGC 60.605 55.000 0.00 0.00 0.00 5.01
249 250 1.890876 TTTGGTCTTCATCCGTGGTG 58.109 50.000 0.00 0.00 0.00 4.17
250 251 2.039746 TCATTTGGTCTTCATCCGTGGT 59.960 45.455 0.00 0.00 0.00 4.16
251 252 2.710377 TCATTTGGTCTTCATCCGTGG 58.290 47.619 0.00 0.00 0.00 4.94
252 253 3.940852 TCATCATTTGGTCTTCATCCGTG 59.059 43.478 0.00 0.00 0.00 4.94
253 254 4.220693 TCATCATTTGGTCTTCATCCGT 57.779 40.909 0.00 0.00 0.00 4.69
254 255 5.061853 AGATCATCATTTGGTCTTCATCCG 58.938 41.667 0.00 0.00 43.58 4.18
262 263 4.212214 GCCGTCTAAGATCATCATTTGGTC 59.788 45.833 0.00 0.00 35.53 4.02
263 264 4.130118 GCCGTCTAAGATCATCATTTGGT 58.870 43.478 0.00 0.00 0.00 3.67
264 265 4.384056 AGCCGTCTAAGATCATCATTTGG 58.616 43.478 0.00 0.00 0.00 3.28
265 266 4.450419 GGAGCCGTCTAAGATCATCATTTG 59.550 45.833 0.00 0.00 0.00 2.32
266 267 4.503991 GGGAGCCGTCTAAGATCATCATTT 60.504 45.833 0.00 0.00 0.00 2.32
267 268 3.007398 GGGAGCCGTCTAAGATCATCATT 59.993 47.826 0.00 0.00 0.00 2.57
268 269 2.564947 GGGAGCCGTCTAAGATCATCAT 59.435 50.000 0.00 0.00 0.00 2.45
269 270 1.964223 GGGAGCCGTCTAAGATCATCA 59.036 52.381 0.00 0.00 0.00 3.07
270 271 2.029470 CAGGGAGCCGTCTAAGATCATC 60.029 54.545 0.00 0.00 0.00 2.92
271 272 1.967066 CAGGGAGCCGTCTAAGATCAT 59.033 52.381 0.00 0.00 0.00 2.45
272 273 1.342076 ACAGGGAGCCGTCTAAGATCA 60.342 52.381 0.00 0.00 0.00 2.92
273 274 1.404843 ACAGGGAGCCGTCTAAGATC 58.595 55.000 0.00 0.00 0.00 2.75
274 275 2.750141 TACAGGGAGCCGTCTAAGAT 57.250 50.000 0.00 0.00 0.00 2.40
275 276 2.307768 CATACAGGGAGCCGTCTAAGA 58.692 52.381 0.00 0.00 0.00 2.10
276 277 2.032620 ACATACAGGGAGCCGTCTAAG 58.967 52.381 0.00 0.00 0.00 2.18
277 278 2.029623 GACATACAGGGAGCCGTCTAA 58.970 52.381 0.00 0.00 0.00 2.10
278 279 1.688772 GACATACAGGGAGCCGTCTA 58.311 55.000 0.00 0.00 0.00 2.59
279 280 1.043673 GGACATACAGGGAGCCGTCT 61.044 60.000 0.00 0.00 0.00 4.18
280 281 1.327690 TGGACATACAGGGAGCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
281 282 1.305802 TGGACATACAGGGAGCCGT 60.306 57.895 0.00 0.00 0.00 5.68
282 283 1.144057 GTGGACATACAGGGAGCCG 59.856 63.158 0.00 0.00 0.00 5.52
283 284 1.144057 CGTGGACATACAGGGAGCC 59.856 63.158 0.00 0.00 0.00 4.70
284 285 1.144057 CCGTGGACATACAGGGAGC 59.856 63.158 0.00 0.00 46.56 4.70
285 286 0.686441 TCCCGTGGACATACAGGGAG 60.686 60.000 4.32 0.00 46.56 4.30
286 287 1.388928 TCCCGTGGACATACAGGGA 59.611 57.895 4.32 1.27 46.56 4.20
287 288 0.393077 GATCCCGTGGACATACAGGG 59.607 60.000 0.00 0.00 44.02 4.45
288 289 1.069204 CAGATCCCGTGGACATACAGG 59.931 57.143 0.00 0.00 32.98 4.00
289 290 1.539065 GCAGATCCCGTGGACATACAG 60.539 57.143 0.00 0.00 32.98 2.74
290 291 0.464036 GCAGATCCCGTGGACATACA 59.536 55.000 0.00 0.00 32.98 2.29
291 292 0.464036 TGCAGATCCCGTGGACATAC 59.536 55.000 0.00 0.00 32.98 2.39
292 293 1.070601 CATGCAGATCCCGTGGACATA 59.929 52.381 0.00 0.00 32.98 2.29
293 294 0.179037 CATGCAGATCCCGTGGACAT 60.179 55.000 0.00 0.00 32.98 3.06
294 295 1.221566 CATGCAGATCCCGTGGACA 59.778 57.895 0.00 0.00 32.98 4.02
295 296 1.524621 CCATGCAGATCCCGTGGAC 60.525 63.158 14.23 0.00 40.98 4.02
296 297 2.745308 CCCATGCAGATCCCGTGGA 61.745 63.158 18.98 1.00 40.98 4.02
297 298 2.203252 CCCATGCAGATCCCGTGG 60.203 66.667 12.98 12.98 38.76 4.94
298 299 2.203252 CCCCATGCAGATCCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
299 300 3.492353 CCCCCATGCAGATCCCGT 61.492 66.667 0.00 0.00 0.00 5.28
300 301 4.962836 GCCCCCATGCAGATCCCG 62.963 72.222 0.00 0.00 0.00 5.14
301 302 3.824425 TGCCCCCATGCAGATCCC 61.824 66.667 0.00 0.00 36.04 3.85
307 308 3.746436 ATCAGCTGCCCCCATGCA 61.746 61.111 9.47 0.00 39.37 3.96
308 309 3.224324 CATCAGCTGCCCCCATGC 61.224 66.667 9.47 0.00 0.00 4.06
309 310 2.520982 CCATCAGCTGCCCCCATG 60.521 66.667 9.47 7.11 0.00 3.66
310 311 3.829226 CCCATCAGCTGCCCCCAT 61.829 66.667 9.47 0.00 0.00 4.00
312 313 4.828296 CACCCATCAGCTGCCCCC 62.828 72.222 9.47 0.00 0.00 5.40
313 314 4.828296 CCACCCATCAGCTGCCCC 62.828 72.222 9.47 0.00 0.00 5.80
314 315 2.786512 TTTCCACCCATCAGCTGCCC 62.787 60.000 9.47 0.00 0.00 5.36
315 316 1.304381 TTTCCACCCATCAGCTGCC 60.304 57.895 9.47 0.00 0.00 4.85
316 317 1.318158 CCTTTCCACCCATCAGCTGC 61.318 60.000 9.47 0.00 0.00 5.25
317 318 0.682209 CCCTTTCCACCCATCAGCTG 60.682 60.000 7.63 7.63 0.00 4.24
318 319 1.142688 ACCCTTTCCACCCATCAGCT 61.143 55.000 0.00 0.00 0.00 4.24
319 320 0.251787 AACCCTTTCCACCCATCAGC 60.252 55.000 0.00 0.00 0.00 4.26
320 321 1.549203 CAACCCTTTCCACCCATCAG 58.451 55.000 0.00 0.00 0.00 2.90
321 322 0.541764 GCAACCCTTTCCACCCATCA 60.542 55.000 0.00 0.00 0.00 3.07
322 323 1.595093 CGCAACCCTTTCCACCCATC 61.595 60.000 0.00 0.00 0.00 3.51
323 324 1.606313 CGCAACCCTTTCCACCCAT 60.606 57.895 0.00 0.00 0.00 4.00
324 325 2.203422 CGCAACCCTTTCCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
325 326 2.989253 CCGCAACCCTTTCCACCC 60.989 66.667 0.00 0.00 0.00 4.61
326 327 1.971695 CTCCGCAACCCTTTCCACC 60.972 63.158 0.00 0.00 0.00 4.61
327 328 1.971695 CCTCCGCAACCCTTTCCAC 60.972 63.158 0.00 0.00 0.00 4.02
328 329 1.710996 TTCCTCCGCAACCCTTTCCA 61.711 55.000 0.00 0.00 0.00 3.53
329 330 0.323451 ATTCCTCCGCAACCCTTTCC 60.323 55.000 0.00 0.00 0.00 3.13
330 331 2.413310 TATTCCTCCGCAACCCTTTC 57.587 50.000 0.00 0.00 0.00 2.62
331 332 2.654863 CATATTCCTCCGCAACCCTTT 58.345 47.619 0.00 0.00 0.00 3.11
332 333 1.750682 GCATATTCCTCCGCAACCCTT 60.751 52.381 0.00 0.00 0.00 3.95
333 334 0.179018 GCATATTCCTCCGCAACCCT 60.179 55.000 0.00 0.00 0.00 4.34
334 335 0.465460 TGCATATTCCTCCGCAACCC 60.465 55.000 0.00 0.00 0.00 4.11
335 336 1.537202 GATGCATATTCCTCCGCAACC 59.463 52.381 0.00 0.00 38.01 3.77
336 337 1.537202 GGATGCATATTCCTCCGCAAC 59.463 52.381 0.00 0.00 38.01 4.17
337 338 1.421268 AGGATGCATATTCCTCCGCAA 59.579 47.619 0.00 0.00 39.46 4.85
338 339 1.059098 AGGATGCATATTCCTCCGCA 58.941 50.000 0.00 0.00 39.46 5.69
339 340 3.944476 AGGATGCATATTCCTCCGC 57.056 52.632 0.00 0.00 39.46 5.54
343 344 1.905215 CGGAGGAGGATGCATATTCCT 59.095 52.381 24.36 24.36 46.41 3.36
344 345 1.625818 ACGGAGGAGGATGCATATTCC 59.374 52.381 17.31 17.31 0.00 3.01
345 346 2.354203 GGACGGAGGAGGATGCATATTC 60.354 54.545 0.00 0.00 0.00 1.75
346 347 1.625818 GGACGGAGGAGGATGCATATT 59.374 52.381 0.00 0.00 0.00 1.28
347 348 1.270907 GGACGGAGGAGGATGCATAT 58.729 55.000 0.00 0.00 0.00 1.78
348 349 0.832135 GGGACGGAGGAGGATGCATA 60.832 60.000 0.00 0.00 0.00 3.14
349 350 2.143419 GGGACGGAGGAGGATGCAT 61.143 63.158 0.00 0.00 0.00 3.96
350 351 2.764128 GGGACGGAGGAGGATGCA 60.764 66.667 0.00 0.00 0.00 3.96
351 352 3.551407 GGGGACGGAGGAGGATGC 61.551 72.222 0.00 0.00 0.00 3.91
352 353 1.460305 ATGGGGACGGAGGAGGATG 60.460 63.158 0.00 0.00 0.00 3.51
353 354 1.152226 GATGGGGACGGAGGAGGAT 60.152 63.158 0.00 0.00 0.00 3.24
354 355 2.282446 GATGGGGACGGAGGAGGA 59.718 66.667 0.00 0.00 0.00 3.71
355 356 2.844839 GGATGGGGACGGAGGAGG 60.845 72.222 0.00 0.00 0.00 4.30
356 357 1.834822 GAGGATGGGGACGGAGGAG 60.835 68.421 0.00 0.00 0.00 3.69
357 358 1.961381 ATGAGGATGGGGACGGAGGA 61.961 60.000 0.00 0.00 0.00 3.71
358 359 1.460305 ATGAGGATGGGGACGGAGG 60.460 63.158 0.00 0.00 0.00 4.30
359 360 0.760567 TGATGAGGATGGGGACGGAG 60.761 60.000 0.00 0.00 0.00 4.63
360 361 0.104986 ATGATGAGGATGGGGACGGA 60.105 55.000 0.00 0.00 0.00 4.69
361 362 0.322975 GATGATGAGGATGGGGACGG 59.677 60.000 0.00 0.00 0.00 4.79
362 363 0.322975 GGATGATGAGGATGGGGACG 59.677 60.000 0.00 0.00 0.00 4.79
363 364 1.627834 GAGGATGATGAGGATGGGGAC 59.372 57.143 0.00 0.00 0.00 4.46
364 365 1.485786 GGAGGATGATGAGGATGGGGA 60.486 57.143 0.00 0.00 0.00 4.81
365 366 0.990374 GGAGGATGATGAGGATGGGG 59.010 60.000 0.00 0.00 0.00 4.96
366 367 0.990374 GGGAGGATGATGAGGATGGG 59.010 60.000 0.00 0.00 0.00 4.00
367 368 0.990374 GGGGAGGATGATGAGGATGG 59.010 60.000 0.00 0.00 0.00 3.51
368 369 1.738474 TGGGGAGGATGATGAGGATG 58.262 55.000 0.00 0.00 0.00 3.51
369 370 2.061061 GTTGGGGAGGATGATGAGGAT 58.939 52.381 0.00 0.00 0.00 3.24
370 371 1.511613 GTTGGGGAGGATGATGAGGA 58.488 55.000 0.00 0.00 0.00 3.71
371 372 0.475906 GGTTGGGGAGGATGATGAGG 59.524 60.000 0.00 0.00 0.00 3.86
372 373 1.419387 GAGGTTGGGGAGGATGATGAG 59.581 57.143 0.00 0.00 0.00 2.90
373 374 1.511613 GAGGTTGGGGAGGATGATGA 58.488 55.000 0.00 0.00 0.00 2.92
374 375 0.475906 GGAGGTTGGGGAGGATGATG 59.524 60.000 0.00 0.00 0.00 3.07
390 391 0.679002 TCTTCTACCACGACCCGGAG 60.679 60.000 0.73 0.00 0.00 4.63
393 394 0.679002 TCCTCTTCTACCACGACCCG 60.679 60.000 0.00 0.00 0.00 5.28
410 411 1.739067 CTCTTCCGGTTGTTGGATCC 58.261 55.000 4.20 4.20 34.91 3.36
439 440 4.481112 GGTGCATTGCTTCGGCCG 62.481 66.667 22.12 22.12 40.91 6.13
443 444 2.502510 GCACGGTGCATTGCTTCG 60.503 61.111 27.10 17.71 44.26 3.79
508 509 3.437795 GCAACAGCGAGGCAGCAT 61.438 61.111 7.67 0.00 40.15 3.79
511 512 2.667536 ACAGCAACAGCGAGGCAG 60.668 61.111 0.00 0.00 0.00 4.85
632 635 0.179029 CACGTCTTCCCCAAAGTGGT 60.179 55.000 0.00 0.00 35.17 4.16
681 684 4.157289 GGTTATTATCTACCAGCCGATCGA 59.843 45.833 18.66 0.00 34.48 3.59
682 685 4.158025 AGGTTATTATCTACCAGCCGATCG 59.842 45.833 8.51 8.51 36.87 3.69
798 801 1.310904 AAACCAACAACGCCGTATGT 58.689 45.000 0.00 0.00 0.00 2.29
800 803 1.465777 GCTAAACCAACAACGCCGTAT 59.534 47.619 0.00 0.00 0.00 3.06
849 910 2.831526 TCTGACGGATTGGATGAGTTGA 59.168 45.455 0.00 0.00 0.00 3.18
852 913 1.135139 CGTCTGACGGATTGGATGAGT 59.865 52.381 21.78 0.00 38.08 3.41
853 914 1.845266 CGTCTGACGGATTGGATGAG 58.155 55.000 21.78 0.00 38.08 2.90
865 926 3.002451 AGCTATGATCACGTACGTCTGAC 59.998 47.826 19.94 10.77 0.00 3.51
875 936 3.482472 GTGACGTACAAGCTATGATCACG 59.518 47.826 0.00 0.00 37.84 4.35
892 953 1.266446 TGTTGATGGCAATGTGTGACG 59.734 47.619 0.00 0.00 38.59 4.35
893 954 2.553602 TCTGTTGATGGCAATGTGTGAC 59.446 45.455 0.00 0.00 36.22 3.67
894 955 2.861274 TCTGTTGATGGCAATGTGTGA 58.139 42.857 0.00 0.00 36.22 3.58
897 958 2.756207 TGGATCTGTTGATGGCAATGTG 59.244 45.455 0.00 0.00 36.22 3.21
898 959 3.090210 TGGATCTGTTGATGGCAATGT 57.910 42.857 0.00 0.00 36.22 2.71
899 960 4.500887 GGATTGGATCTGTTGATGGCAATG 60.501 45.833 0.00 0.00 36.22 2.82
900 961 3.640029 GGATTGGATCTGTTGATGGCAAT 59.360 43.478 0.00 0.00 36.22 3.56
901 962 3.025978 GGATTGGATCTGTTGATGGCAA 58.974 45.455 0.00 0.00 32.19 4.52
902 963 2.658285 GGATTGGATCTGTTGATGGCA 58.342 47.619 0.00 0.00 32.19 4.92
903 964 1.605710 CGGATTGGATCTGTTGATGGC 59.394 52.381 0.00 0.00 32.19 4.40
904 965 2.923121 ACGGATTGGATCTGTTGATGG 58.077 47.619 0.00 0.00 46.36 3.51
991 1052 0.252742 ACGATCCCCATATCCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
1017 1078 1.299541 CTTCGGCCGATGTAAGCAAT 58.700 50.000 31.56 0.00 0.00 3.56
1021 1082 1.299541 ATTGCTTCGGCCGATGTAAG 58.700 50.000 34.99 27.82 40.91 2.34
1034 1095 3.696548 GCCTAGTTCTTTGCCTATTGCTT 59.303 43.478 0.00 0.00 42.00 3.91
1128 1189 1.585668 GTGATGAACTCGTCGATGCAG 59.414 52.381 0.00 1.35 34.69 4.41
1434 1499 9.462174 CAATACATGCATATCGTGGTTAAAAAT 57.538 29.630 0.00 0.00 36.01 1.82
1444 1510 6.146673 CACTGATCACAATACATGCATATCGT 59.853 38.462 0.00 0.00 0.00 3.73
1447 1513 6.002082 AGCACTGATCACAATACATGCATAT 58.998 36.000 0.00 0.00 34.27 1.78
1514 1580 6.866480 ACATGTATGATGGGCTGTTAAAAAG 58.134 36.000 0.00 0.00 0.00 2.27
1562 2193 9.212641 CCACTAACCAATCTGATCTATAACATG 57.787 37.037 0.00 0.00 0.00 3.21
1652 2285 9.902684 CGGATAGAGTACCTCTAGGATTTTATA 57.097 37.037 2.23 0.00 44.80 0.98
1653 2286 7.339976 GCGGATAGAGTACCTCTAGGATTTTAT 59.660 40.741 2.23 0.00 44.80 1.40
1660 2293 3.075884 GTGCGGATAGAGTACCTCTAGG 58.924 54.545 7.05 0.00 44.80 3.02
1669 2302 5.086104 AGTGTTTATTGTGCGGATAGAGT 57.914 39.130 0.00 0.00 0.00 3.24
1720 2353 2.538132 GGCGACCGTAATGTTGCAATAC 60.538 50.000 0.59 0.00 45.69 1.89
1808 2448 1.373246 CGGAGGTTGCGGACGTAAA 60.373 57.895 0.00 0.00 0.00 2.01
1849 2489 1.633432 TGGGAAAGGAATCACGTGGAT 59.367 47.619 17.00 4.53 38.05 3.41
1900 2540 3.319198 GTGCGAAGGGGGTCTGGA 61.319 66.667 0.00 0.00 0.00 3.86
1916 2556 2.252714 GTTGTTGGAGGAGAGAGGAGT 58.747 52.381 0.00 0.00 0.00 3.85
1994 2957 2.722201 GGTCCTCGTCGATGCCCTT 61.722 63.158 0.00 0.00 0.00 3.95
2000 2963 2.413142 GGTTCCGGTCCTCGTCGAT 61.413 63.158 0.00 0.00 37.11 3.59
2025 2988 0.252742 TTCCTCCTCCACCTTCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
2097 3060 4.083110 GCTACATCACCATCCATGCATAAC 60.083 45.833 0.00 0.00 0.00 1.89
2125 3088 7.786030 TGTATGATGGGTTGTTCAAAGAAAAA 58.214 30.769 0.00 0.00 0.00 1.94
2190 3154 3.007074 TCCGCAAACACCACTAACTGATA 59.993 43.478 0.00 0.00 0.00 2.15
2282 3246 2.221055 GCTGGCTGGAATAACGAATACG 59.779 50.000 0.00 0.00 45.75 3.06
2283 3247 2.548480 GGCTGGCTGGAATAACGAATAC 59.452 50.000 0.00 0.00 0.00 1.89
2284 3248 2.438021 AGGCTGGCTGGAATAACGAATA 59.562 45.455 1.67 0.00 0.00 1.75
2292 3256 1.000396 GTGGAAGGCTGGCTGGAAT 60.000 57.895 3.84 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.