Multiple sequence alignment - TraesCS7B01G484900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G484900 chr7B 100.000 2450 0 0 1 2450 741667438 741669887 0.000000e+00 4525.0
1 TraesCS7B01G484900 chr7B 79.875 800 133 11 5 796 741623542 741624321 5.920000e-156 560.0
2 TraesCS7B01G484900 chr7B 79.452 803 141 16 8 807 651135889 651135108 4.610000e-152 547.0
3 TraesCS7B01G484900 chr7B 78.863 809 148 12 1 807 741483532 741482745 2.160000e-145 525.0
4 TraesCS7B01G484900 chr7B 81.690 71 12 1 1683 1753 717349611 717349680 9.460000e-05 58.4
5 TraesCS7B01G484900 chr4B 98.030 660 13 0 1791 2450 638534766 638534107 0.000000e+00 1147.0
6 TraesCS7B01G484900 chr4B 78.810 807 147 7 1 807 625074233 625073451 2.790000e-144 521.0
7 TraesCS7B01G484900 chr7A 90.847 732 38 9 813 1519 731882241 731882968 0.000000e+00 953.0
8 TraesCS7B01G484900 chr7A 85.732 799 94 9 1 798 731773495 731774274 0.000000e+00 826.0
9 TraesCS7B01G484900 chr7A 80.817 808 135 11 1 807 675023366 675022578 1.240000e-172 616.0
10 TraesCS7B01G484900 chr7A 78.667 825 143 16 1 807 731002161 731001352 3.610000e-143 518.0
11 TraesCS7B01G484900 chr7A 80.419 669 108 12 1801 2450 96095237 96095901 2.830000e-134 488.0
12 TraesCS7B01G484900 chr7A 77.778 810 148 16 1 807 731505744 731506524 1.030000e-128 470.0
13 TraesCS7B01G484900 chr7A 93.478 92 6 0 1692 1783 1753819 1753910 1.180000e-28 137.0
14 TraesCS7B01G484900 chr6B 91.128 665 50 2 1795 2450 671096715 671097379 0.000000e+00 893.0
15 TraesCS7B01G484900 chr6B 80.617 681 111 15 1788 2450 432362211 432362888 7.820000e-140 507.0
16 TraesCS7B01G484900 chr6B 80.282 355 48 14 858 1198 658233811 658234157 5.230000e-62 248.0
17 TraesCS7B01G484900 chr6B 76.730 318 28 24 1215 1488 658194643 658194958 4.250000e-28 135.0
18 TraesCS7B01G484900 chr6B 89.552 67 7 0 1237 1303 658403390 658403456 4.340000e-13 86.1
19 TraesCS7B01G484900 chr2B 91.071 672 43 4 1795 2450 19071140 19071810 0.000000e+00 893.0
20 TraesCS7B01G484900 chr2B 81.029 680 104 16 1791 2450 598580381 598579707 3.610000e-143 518.0
21 TraesCS7B01G484900 chr2B 85.897 78 11 0 1692 1769 668165809 668165886 1.560000e-12 84.2
22 TraesCS7B01G484900 chr7D 83.641 813 114 10 1 807 634456139 634455340 0.000000e+00 747.0
23 TraesCS7B01G484900 chr7D 93.612 407 13 4 819 1216 634440453 634440051 1.620000e-166 595.0
24 TraesCS7B01G484900 chr7D 79.901 806 134 12 1 798 634652114 634651329 1.270000e-157 566.0
25 TraesCS7B01G484900 chr7D 88.584 438 36 10 1252 1678 634440051 634439617 1.000000e-143 520.0
26 TraesCS7B01G484900 chr7D 94.643 56 3 0 1118 1173 634440050 634439995 1.210000e-13 87.9
27 TraesCS7B01G484900 chr5B 86.099 669 76 9 1795 2450 706491207 706491871 0.000000e+00 704.0
28 TraesCS7B01G484900 chr5B 93.069 101 6 1 1682 1782 269958843 269958942 1.960000e-31 147.0
29 TraesCS7B01G484900 chr1B 81.176 680 101 17 1791 2450 118136683 118137355 2.790000e-144 521.0
30 TraesCS7B01G484900 chr6A 85.393 445 54 4 1791 2225 27175089 27175532 3.720000e-123 451.0
31 TraesCS7B01G484900 chr6A 80.402 199 20 8 1369 1564 581983500 581983682 1.530000e-27 134.0
32 TraesCS7B01G484900 chr6A 88.542 96 9 2 1215 1308 581982931 581983026 5.540000e-22 115.0
33 TraesCS7B01G484900 chr6A 88.542 96 9 2 1215 1308 582086521 582086616 5.540000e-22 115.0
34 TraesCS7B01G484900 chr6A 92.754 69 5 0 1235 1303 581983257 581983325 1.550000e-17 100.0
35 TraesCS7B01G484900 chr6A 87.324 71 9 0 1237 1307 582631015 582630945 5.620000e-12 82.4
36 TraesCS7B01G484900 chr6A 86.301 73 10 0 1236 1308 582095882 582095954 2.020000e-11 80.5
37 TraesCS7B01G484900 chr6D 80.347 346 55 9 858 1198 435072680 435073017 1.450000e-62 250.0
38 TraesCS7B01G484900 chr6D 82.692 104 12 5 1386 1489 435831772 435831675 1.210000e-13 87.9
39 TraesCS7B01G484900 chr3B 93.069 101 6 1 1682 1782 51975889 51975988 1.960000e-31 147.0
40 TraesCS7B01G484900 chr5A 85.897 78 11 0 1692 1769 546163846 546163923 1.560000e-12 84.2
41 TraesCS7B01G484900 chr4D 83.824 68 10 1 1678 1745 143340102 143340036 2.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G484900 chr7B 741667438 741669887 2449 False 4525.000000 4525 100.000000 1 2450 1 chr7B.!!$F3 2449
1 TraesCS7B01G484900 chr7B 741623542 741624321 779 False 560.000000 560 79.875000 5 796 1 chr7B.!!$F2 791
2 TraesCS7B01G484900 chr7B 651135108 651135889 781 True 547.000000 547 79.452000 8 807 1 chr7B.!!$R1 799
3 TraesCS7B01G484900 chr7B 741482745 741483532 787 True 525.000000 525 78.863000 1 807 1 chr7B.!!$R2 806
4 TraesCS7B01G484900 chr4B 638534107 638534766 659 True 1147.000000 1147 98.030000 1791 2450 1 chr4B.!!$R2 659
5 TraesCS7B01G484900 chr4B 625073451 625074233 782 True 521.000000 521 78.810000 1 807 1 chr4B.!!$R1 806
6 TraesCS7B01G484900 chr7A 731882241 731882968 727 False 953.000000 953 90.847000 813 1519 1 chr7A.!!$F5 706
7 TraesCS7B01G484900 chr7A 731773495 731774274 779 False 826.000000 826 85.732000 1 798 1 chr7A.!!$F4 797
8 TraesCS7B01G484900 chr7A 675022578 675023366 788 True 616.000000 616 80.817000 1 807 1 chr7A.!!$R1 806
9 TraesCS7B01G484900 chr7A 731001352 731002161 809 True 518.000000 518 78.667000 1 807 1 chr7A.!!$R2 806
10 TraesCS7B01G484900 chr7A 96095237 96095901 664 False 488.000000 488 80.419000 1801 2450 1 chr7A.!!$F2 649
11 TraesCS7B01G484900 chr7A 731505744 731506524 780 False 470.000000 470 77.778000 1 807 1 chr7A.!!$F3 806
12 TraesCS7B01G484900 chr6B 671096715 671097379 664 False 893.000000 893 91.128000 1795 2450 1 chr6B.!!$F5 655
13 TraesCS7B01G484900 chr6B 432362211 432362888 677 False 507.000000 507 80.617000 1788 2450 1 chr6B.!!$F1 662
14 TraesCS7B01G484900 chr2B 19071140 19071810 670 False 893.000000 893 91.071000 1795 2450 1 chr2B.!!$F1 655
15 TraesCS7B01G484900 chr2B 598579707 598580381 674 True 518.000000 518 81.029000 1791 2450 1 chr2B.!!$R1 659
16 TraesCS7B01G484900 chr7D 634455340 634456139 799 True 747.000000 747 83.641000 1 807 1 chr7D.!!$R1 806
17 TraesCS7B01G484900 chr7D 634651329 634652114 785 True 566.000000 566 79.901000 1 798 1 chr7D.!!$R2 797
18 TraesCS7B01G484900 chr7D 634439617 634440453 836 True 400.966667 595 92.279667 819 1678 3 chr7D.!!$R3 859
19 TraesCS7B01G484900 chr5B 706491207 706491871 664 False 704.000000 704 86.099000 1795 2450 1 chr5B.!!$F2 655
20 TraesCS7B01G484900 chr1B 118136683 118137355 672 False 521.000000 521 81.176000 1791 2450 1 chr1B.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 441 0.031585 TCAGACGTGGACGAACAAGG 59.968 55.0 6.12 0.0 43.02 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1830 0.180406 ATCGTGGGGTGCAGGTTATC 59.82 55.0 0.0 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.878397 CAGTTGATCAGATAGTTGGTTCCC 59.122 45.833 0.00 0.00 0.00 3.97
64 65 3.819564 TGATCAGATAGTTGGTTCCCG 57.180 47.619 0.00 0.00 0.00 5.14
117 118 3.578688 GCACACTTGCCATTAAAGAAGG 58.421 45.455 0.00 0.00 43.66 3.46
158 159 7.175641 CAGACCTTGGTCATTTCATAAGTCTTT 59.824 37.037 20.36 0.00 0.00 2.52
176 177 7.259088 AGTCTTTACCTCCATTGAGTAACAT 57.741 36.000 0.00 0.00 36.86 2.71
180 181 6.636454 TTACCTCCATTGAGTAACATTCCT 57.364 37.500 0.00 0.00 36.86 3.36
184 191 5.762218 CCTCCATTGAGTAACATTCCTCATC 59.238 44.000 0.00 0.00 37.54 2.92
201 211 4.338400 CCTCATCGTCAACATGACTACCTA 59.662 45.833 0.00 0.00 44.85 3.08
203 213 4.703093 TCATCGTCAACATGACTACCTACA 59.297 41.667 0.00 0.00 44.85 2.74
240 250 1.167851 CAAGAATCCTTCGGCTGCAA 58.832 50.000 0.50 0.00 34.02 4.08
244 254 0.539438 AATCCTTCGGCTGCAACCAA 60.539 50.000 6.99 0.00 0.00 3.67
246 256 2.192861 CCTTCGGCTGCAACCAACA 61.193 57.895 6.99 0.00 0.00 3.33
247 257 1.008538 CTTCGGCTGCAACCAACAC 60.009 57.895 6.99 0.00 0.00 3.32
255 265 1.066908 CTGCAACCAACACGGAAATGT 59.933 47.619 0.00 0.00 38.63 2.71
258 268 3.047093 GCAACCAACACGGAAATGTAAC 58.953 45.455 0.00 0.00 38.63 2.50
378 388 3.399330 TGACGGACAAGAGAAAACATCC 58.601 45.455 0.00 0.00 0.00 3.51
380 390 1.732259 CGGACAAGAGAAAACATCCCG 59.268 52.381 0.00 0.00 0.00 5.14
393 403 2.370445 ATCCCGAGGGCTCCTTGTG 61.370 63.158 2.58 0.00 33.27 3.33
420 430 2.642995 CAACAACTGCAATCAGACGTG 58.357 47.619 0.00 0.00 42.95 4.49
426 436 0.032815 TGCAATCAGACGTGGACGAA 59.967 50.000 6.12 0.00 43.02 3.85
427 437 0.438830 GCAATCAGACGTGGACGAAC 59.561 55.000 6.12 0.00 43.02 3.95
428 438 1.778334 CAATCAGACGTGGACGAACA 58.222 50.000 6.12 0.00 43.02 3.18
429 439 2.131972 CAATCAGACGTGGACGAACAA 58.868 47.619 6.12 0.00 43.02 2.83
430 440 2.065993 ATCAGACGTGGACGAACAAG 57.934 50.000 6.12 0.00 43.02 3.16
431 441 0.031585 TCAGACGTGGACGAACAAGG 59.968 55.000 6.12 0.00 43.02 3.61
432 442 1.300697 AGACGTGGACGAACAAGGC 60.301 57.895 6.12 0.00 43.02 4.35
433 443 1.300697 GACGTGGACGAACAAGGCT 60.301 57.895 6.12 0.00 43.02 4.58
434 444 0.878961 GACGTGGACGAACAAGGCTT 60.879 55.000 6.12 0.00 43.02 4.35
435 445 0.463116 ACGTGGACGAACAAGGCTTT 60.463 50.000 6.12 0.00 43.02 3.51
436 446 0.661020 CGTGGACGAACAAGGCTTTT 59.339 50.000 0.00 0.00 43.02 2.27
437 447 1.596954 CGTGGACGAACAAGGCTTTTG 60.597 52.381 0.00 0.00 43.02 2.44
441 451 2.293399 GGACGAACAAGGCTTTTGTCAT 59.707 45.455 17.12 0.00 38.61 3.06
449 459 1.202976 AGGCTTTTGTCATGGCTCTGT 60.203 47.619 0.00 0.00 30.06 3.41
476 486 1.219980 AGATCCCTGAGCTCCAGATGA 59.780 52.381 12.15 8.98 45.78 2.92
595 605 1.083015 CGCGCACGCAGTTAAAACT 60.083 52.632 16.04 0.00 41.61 2.66
633 662 0.687757 TGGGAAGATGGGAGACTCGG 60.688 60.000 0.00 0.00 0.00 4.63
635 664 1.443828 GAAGATGGGAGACTCGGCC 59.556 63.158 0.00 0.00 0.00 6.13
636 665 1.306141 AAGATGGGAGACTCGGCCA 60.306 57.895 2.24 3.26 0.00 5.36
637 666 0.692419 AAGATGGGAGACTCGGCCAT 60.692 55.000 11.76 11.76 0.00 4.40
638 667 0.188587 AGATGGGAGACTCGGCCATA 59.811 55.000 11.88 0.00 0.00 2.74
639 668 0.605589 GATGGGAGACTCGGCCATAG 59.394 60.000 11.88 1.22 0.00 2.23
640 669 0.188587 ATGGGAGACTCGGCCATAGA 59.811 55.000 10.57 0.00 0.00 1.98
656 685 4.067896 CCATAGACATACACCATTGCCTC 58.932 47.826 0.00 0.00 0.00 4.70
682 711 5.634118 TGTGGATGAAAAGACAAAGAGGAT 58.366 37.500 0.00 0.00 0.00 3.24
688 717 4.758674 TGAAAAGACAAAGAGGATGAGCTG 59.241 41.667 0.00 0.00 0.00 4.24
694 723 0.108424 AAGAGGATGAGCTGTGTCGC 60.108 55.000 0.00 0.00 0.00 5.19
719 748 7.192913 CGTATTTTGCAAAGCATATCACCTTA 58.807 34.615 12.41 0.00 38.76 2.69
799 828 2.616458 GGGGATCTTGTGGCTGGGT 61.616 63.158 0.00 0.00 0.00 4.51
809 838 3.657350 GGCTGGGTGGCAAGGGTA 61.657 66.667 0.00 0.00 41.37 3.69
810 839 2.683475 GCTGGGTGGCAAGGGTAT 59.317 61.111 0.00 0.00 0.00 2.73
811 840 1.641552 GGCTGGGTGGCAAGGGTATA 61.642 60.000 0.00 0.00 41.37 1.47
812 841 0.179018 GCTGGGTGGCAAGGGTATAG 60.179 60.000 0.00 0.00 0.00 1.31
813 842 1.213296 CTGGGTGGCAAGGGTATAGT 58.787 55.000 0.00 0.00 0.00 2.12
814 843 1.564348 CTGGGTGGCAAGGGTATAGTT 59.436 52.381 0.00 0.00 0.00 2.24
817 846 1.562475 GGTGGCAAGGGTATAGTTGGA 59.438 52.381 0.00 0.00 0.00 3.53
823 852 3.876156 GCAAGGGTATAGTTGGAAGCCAA 60.876 47.826 0.00 0.00 41.69 4.52
827 856 3.883489 GGGTATAGTTGGAAGCCAATCAC 59.117 47.826 1.79 0.00 45.80 3.06
976 1005 3.326880 CCCTCCAACGGCCTATAAATAGT 59.673 47.826 0.00 0.00 0.00 2.12
985 1014 3.006537 GGCCTATAAATAGTGCCTCGTGA 59.993 47.826 16.21 0.00 40.51 4.35
1021 1059 0.179018 AGCCACCTTCCTCACACAAC 60.179 55.000 0.00 0.00 0.00 3.32
1249 1287 2.261671 GCGAGAAGAAGGGCGTCA 59.738 61.111 0.00 0.00 0.00 4.35
1519 1574 4.258543 CCAACTTCCACCGTGTATACATT 58.741 43.478 9.18 0.00 0.00 2.71
1522 1577 6.183360 CCAACTTCCACCGTGTATACATTAAC 60.183 42.308 9.18 0.00 0.00 2.01
1523 1578 6.290294 ACTTCCACCGTGTATACATTAACT 57.710 37.500 9.18 0.00 0.00 2.24
1534 1589 9.784680 CGTGTATACATTAACTGAGTCTAGTTT 57.215 33.333 9.18 0.38 41.01 2.66
1554 1609 4.595762 TTAACTAGCTCACTTGGTCGTT 57.404 40.909 0.00 0.00 0.00 3.85
1555 1610 2.440539 ACTAGCTCACTTGGTCGTTG 57.559 50.000 0.00 0.00 0.00 4.10
1556 1611 1.000955 ACTAGCTCACTTGGTCGTTGG 59.999 52.381 0.00 0.00 0.00 3.77
1557 1612 1.272490 CTAGCTCACTTGGTCGTTGGA 59.728 52.381 0.00 0.00 0.00 3.53
1558 1613 0.034059 AGCTCACTTGGTCGTTGGAG 59.966 55.000 0.00 0.00 0.00 3.86
1559 1614 0.951040 GCTCACTTGGTCGTTGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
1560 1615 0.679505 CTCACTTGGTCGTTGGAGGA 59.320 55.000 0.00 0.00 0.00 3.71
1561 1616 0.679505 TCACTTGGTCGTTGGAGGAG 59.320 55.000 0.00 0.00 0.00 3.69
1562 1617 0.951040 CACTTGGTCGTTGGAGGAGC 60.951 60.000 0.00 0.00 0.00 4.70
1563 1618 1.738099 CTTGGTCGTTGGAGGAGCG 60.738 63.158 0.00 0.00 33.66 5.03
1564 1619 3.876589 TTGGTCGTTGGAGGAGCGC 62.877 63.158 0.00 0.00 33.66 5.92
1569 1624 4.388499 GTTGGAGGAGCGCCCGAA 62.388 66.667 2.29 0.00 40.87 4.30
1570 1625 3.399181 TTGGAGGAGCGCCCGAAT 61.399 61.111 2.29 0.00 40.87 3.34
1571 1626 2.966732 TTGGAGGAGCGCCCGAATT 61.967 57.895 2.29 0.00 40.87 2.17
1586 1641 4.270008 CCCGAATTCATCTGGGTTTAAGT 58.730 43.478 6.22 0.00 37.21 2.24
1608 1690 6.767080 AGTTTTCGTTTGTTTACAATTTGCC 58.233 32.000 0.00 0.00 35.55 4.52
1643 1725 5.297547 GGAAATTTCCTCTTGGTTCAAACC 58.702 41.667 26.94 4.92 45.43 3.27
1658 1740 3.266636 TCAAACCGTGTATGGTATGCTG 58.733 45.455 0.00 0.00 42.89 4.41
1662 1744 1.134521 CCGTGTATGGTATGCTGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
1668 1750 6.350194 CGTGTATGGTATGCTGTGGTATCTAT 60.350 42.308 0.00 0.00 0.00 1.98
1669 1751 7.148137 CGTGTATGGTATGCTGTGGTATCTATA 60.148 40.741 0.00 0.00 0.00 1.31
1726 1808 9.860898 AAAAGCAAACATGAATTCTCCTATAAC 57.139 29.630 7.05 0.00 0.00 1.89
1727 1809 7.573968 AGCAAACATGAATTCTCCTATAACC 57.426 36.000 7.05 0.00 0.00 2.85
1728 1810 7.118723 AGCAAACATGAATTCTCCTATAACCA 58.881 34.615 7.05 0.00 0.00 3.67
1729 1811 7.067494 AGCAAACATGAATTCTCCTATAACCAC 59.933 37.037 7.05 0.00 0.00 4.16
1730 1812 7.148086 GCAAACATGAATTCTCCTATAACCACA 60.148 37.037 7.05 0.00 0.00 4.17
1731 1813 7.865706 AACATGAATTCTCCTATAACCACAC 57.134 36.000 7.05 0.00 0.00 3.82
1732 1814 6.357367 ACATGAATTCTCCTATAACCACACC 58.643 40.000 7.05 0.00 0.00 4.16
1733 1815 6.069673 ACATGAATTCTCCTATAACCACACCA 60.070 38.462 7.05 0.00 0.00 4.17
1734 1816 5.741011 TGAATTCTCCTATAACCACACCAC 58.259 41.667 7.05 0.00 0.00 4.16
1735 1817 5.249622 TGAATTCTCCTATAACCACACCACA 59.750 40.000 7.05 0.00 0.00 4.17
1736 1818 5.772393 ATTCTCCTATAACCACACCACAA 57.228 39.130 0.00 0.00 0.00 3.33
1737 1819 5.570205 TTCTCCTATAACCACACCACAAA 57.430 39.130 0.00 0.00 0.00 2.83
1738 1820 5.570205 TCTCCTATAACCACACCACAAAA 57.430 39.130 0.00 0.00 0.00 2.44
1739 1821 6.134535 TCTCCTATAACCACACCACAAAAT 57.865 37.500 0.00 0.00 0.00 1.82
1740 1822 7.260387 TCTCCTATAACCACACCACAAAATA 57.740 36.000 0.00 0.00 0.00 1.40
1741 1823 7.867921 TCTCCTATAACCACACCACAAAATAT 58.132 34.615 0.00 0.00 0.00 1.28
1742 1824 8.994500 TCTCCTATAACCACACCACAAAATATA 58.006 33.333 0.00 0.00 0.00 0.86
1743 1825 8.967664 TCCTATAACCACACCACAAAATATAC 57.032 34.615 0.00 0.00 0.00 1.47
1744 1826 8.549731 TCCTATAACCACACCACAAAATATACA 58.450 33.333 0.00 0.00 0.00 2.29
1745 1827 8.617809 CCTATAACCACACCACAAAATATACAC 58.382 37.037 0.00 0.00 0.00 2.90
1746 1828 9.168451 CTATAACCACACCACAAAATATACACA 57.832 33.333 0.00 0.00 0.00 3.72
1747 1829 5.957842 ACCACACCACAAAATATACACAG 57.042 39.130 0.00 0.00 0.00 3.66
1748 1830 4.764823 ACCACACCACAAAATATACACAGG 59.235 41.667 0.00 0.00 0.00 4.00
1749 1831 5.007034 CCACACCACAAAATATACACAGGA 58.993 41.667 0.00 0.00 0.00 3.86
1750 1832 5.652014 CCACACCACAAAATATACACAGGAT 59.348 40.000 0.00 0.00 0.00 3.24
1751 1833 6.826231 CCACACCACAAAATATACACAGGATA 59.174 38.462 0.00 0.00 0.00 2.59
1752 1834 7.338196 CCACACCACAAAATATACACAGGATAA 59.662 37.037 0.00 0.00 0.00 1.75
1753 1835 8.181573 CACACCACAAAATATACACAGGATAAC 58.818 37.037 0.00 0.00 0.00 1.89
1754 1836 7.338449 ACACCACAAAATATACACAGGATAACC 59.662 37.037 0.00 0.00 0.00 2.85
1763 1845 4.599860 AGGATAACCTGCACCCCA 57.400 55.556 0.00 0.00 45.92 4.96
1764 1846 1.999346 AGGATAACCTGCACCCCAC 59.001 57.895 0.00 0.00 45.92 4.61
1765 1847 1.451387 GGATAACCTGCACCCCACG 60.451 63.158 0.00 0.00 0.00 4.94
1766 1848 1.600107 GATAACCTGCACCCCACGA 59.400 57.895 0.00 0.00 0.00 4.35
1767 1849 0.180406 GATAACCTGCACCCCACGAT 59.820 55.000 0.00 0.00 0.00 3.73
1768 1850 0.180406 ATAACCTGCACCCCACGATC 59.820 55.000 0.00 0.00 0.00 3.69
1769 1851 1.195442 TAACCTGCACCCCACGATCA 61.195 55.000 0.00 0.00 0.00 2.92
1770 1852 2.063015 AACCTGCACCCCACGATCAA 62.063 55.000 0.00 0.00 0.00 2.57
1771 1853 1.077501 CCTGCACCCCACGATCAAT 60.078 57.895 0.00 0.00 0.00 2.57
1772 1854 0.680921 CCTGCACCCCACGATCAATT 60.681 55.000 0.00 0.00 0.00 2.32
1773 1855 0.734889 CTGCACCCCACGATCAATTC 59.265 55.000 0.00 0.00 0.00 2.17
1774 1856 0.679640 TGCACCCCACGATCAATTCC 60.680 55.000 0.00 0.00 0.00 3.01
1775 1857 0.679640 GCACCCCACGATCAATTCCA 60.680 55.000 0.00 0.00 0.00 3.53
1776 1858 2.023788 GCACCCCACGATCAATTCCAT 61.024 52.381 0.00 0.00 0.00 3.41
1777 1859 1.949525 CACCCCACGATCAATTCCATC 59.050 52.381 0.00 0.00 0.00 3.51
1778 1860 1.846439 ACCCCACGATCAATTCCATCT 59.154 47.619 0.00 0.00 0.00 2.90
1779 1861 3.045634 ACCCCACGATCAATTCCATCTA 58.954 45.455 0.00 0.00 0.00 1.98
1780 1862 3.458118 ACCCCACGATCAATTCCATCTAA 59.542 43.478 0.00 0.00 0.00 2.10
1781 1863 4.104738 ACCCCACGATCAATTCCATCTAAT 59.895 41.667 0.00 0.00 0.00 1.73
1782 1864 5.309543 ACCCCACGATCAATTCCATCTAATA 59.690 40.000 0.00 0.00 0.00 0.98
1783 1865 5.877012 CCCCACGATCAATTCCATCTAATAG 59.123 44.000 0.00 0.00 0.00 1.73
1784 1866 5.877012 CCCACGATCAATTCCATCTAATAGG 59.123 44.000 0.00 0.00 0.00 2.57
1785 1867 6.467677 CCACGATCAATTCCATCTAATAGGT 58.532 40.000 0.00 0.00 0.00 3.08
1786 1868 6.936900 CCACGATCAATTCCATCTAATAGGTT 59.063 38.462 0.00 0.00 0.00 3.50
1787 1869 7.445402 CCACGATCAATTCCATCTAATAGGTTT 59.555 37.037 0.00 0.00 0.00 3.27
1788 1870 8.840321 CACGATCAATTCCATCTAATAGGTTTT 58.160 33.333 0.00 0.00 0.00 2.43
1789 1871 9.408648 ACGATCAATTCCATCTAATAGGTTTTT 57.591 29.630 0.00 0.00 0.00 1.94
1950 2063 1.095600 CGATGACTCTCCGGTTCAGA 58.904 55.000 0.00 0.00 0.00 3.27
1992 2105 3.978193 TGGGGAACGCCATGGCTT 61.978 61.111 33.07 23.13 42.25 4.35
2290 2406 1.480137 CATCTCCTTCTTCGTCTGCCT 59.520 52.381 0.00 0.00 0.00 4.75
2379 2495 4.781959 CGCCATGCCAAACGCCTG 62.782 66.667 0.00 0.00 36.24 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.567478 ATCTGATCAACTGGTAAGCCC 57.433 47.619 0.00 0.00 0.00 5.19
63 64 2.030958 GCTTCCCACCGGTGTTACG 61.031 63.158 31.80 16.97 0.00 3.18
64 65 0.609662 TAGCTTCCCACCGGTGTTAC 59.390 55.000 31.80 16.51 0.00 2.50
106 107 3.056607 CAGGTTGGTGCCCTTCTTTAATG 60.057 47.826 0.00 0.00 0.00 1.90
110 111 0.469892 CCAGGTTGGTGCCCTTCTTT 60.470 55.000 0.00 0.00 31.35 2.52
117 118 1.150536 TCTGTTCCAGGTTGGTGCC 59.849 57.895 0.00 0.00 39.03 5.01
158 159 5.724370 TGAGGAATGTTACTCAATGGAGGTA 59.276 40.000 5.21 0.00 44.87 3.08
184 191 3.442625 TCCTGTAGGTAGTCATGTTGACG 59.557 47.826 2.24 0.00 43.23 4.35
201 211 1.768684 TTCTTCCAAGGCGCTCCTGT 61.769 55.000 7.64 0.00 43.40 4.00
230 240 2.829206 CGTGTTGGTTGCAGCCGAA 61.829 57.895 11.67 5.77 0.00 4.30
240 250 3.547746 ACTGTTACATTTCCGTGTTGGT 58.452 40.909 0.00 0.00 39.52 3.67
244 254 4.637276 TCATGACTGTTACATTTCCGTGT 58.363 39.130 0.00 0.00 36.13 4.49
246 256 6.535150 CAGTATCATGACTGTTACATTTCCGT 59.465 38.462 0.00 0.00 41.67 4.69
247 257 6.937457 CAGTATCATGACTGTTACATTTCCG 58.063 40.000 0.00 0.00 41.67 4.30
255 265 6.852641 TGCCTGAGCAGTATCATGACTGTTA 61.853 44.000 14.16 0.00 46.52 2.41
258 268 2.159000 TGCCTGAGCAGTATCATGACTG 60.159 50.000 9.62 9.62 46.52 3.51
319 329 2.295909 CTCTACCATACCTCTCTGCAGC 59.704 54.545 9.47 0.00 0.00 5.25
378 388 1.218316 GTACACAAGGAGCCCTCGG 59.782 63.158 0.00 0.00 30.89 4.63
380 390 1.602771 GGGTACACAAGGAGCCCTC 59.397 63.158 0.00 0.00 36.49 4.30
411 421 1.336887 CCTTGTTCGTCCACGTCTGAT 60.337 52.381 0.00 0.00 40.80 2.90
420 430 1.673920 TGACAAAAGCCTTGTTCGTCC 59.326 47.619 3.49 0.00 31.96 4.79
426 436 1.615392 GAGCCATGACAAAAGCCTTGT 59.385 47.619 1.55 1.55 34.97 3.16
427 437 1.891150 AGAGCCATGACAAAAGCCTTG 59.109 47.619 0.00 0.00 0.00 3.61
428 438 1.891150 CAGAGCCATGACAAAAGCCTT 59.109 47.619 0.00 0.00 0.00 4.35
429 439 1.202976 ACAGAGCCATGACAAAAGCCT 60.203 47.619 0.00 0.00 0.00 4.58
430 440 1.251251 ACAGAGCCATGACAAAAGCC 58.749 50.000 0.00 0.00 0.00 4.35
431 441 2.294233 TGAACAGAGCCATGACAAAAGC 59.706 45.455 0.00 0.00 0.00 3.51
432 442 4.482386 CATGAACAGAGCCATGACAAAAG 58.518 43.478 0.00 0.00 41.88 2.27
433 443 3.305539 GCATGAACAGAGCCATGACAAAA 60.306 43.478 0.00 0.00 41.88 2.44
434 444 2.229543 GCATGAACAGAGCCATGACAAA 59.770 45.455 0.00 0.00 41.88 2.83
435 445 1.814394 GCATGAACAGAGCCATGACAA 59.186 47.619 0.00 0.00 41.88 3.18
436 446 1.271488 TGCATGAACAGAGCCATGACA 60.271 47.619 0.00 0.00 41.88 3.58
437 447 1.400846 CTGCATGAACAGAGCCATGAC 59.599 52.381 0.00 0.00 41.88 3.06
449 459 1.140452 GAGCTCAGGGATCTGCATGAA 59.860 52.381 9.40 0.00 40.69 2.57
476 486 1.609555 GTCGATCTTCTCACCGGCTAT 59.390 52.381 0.00 0.00 0.00 2.97
519 529 2.104967 CCATTTGATGGTGCTGGACAT 58.895 47.619 0.77 0.00 45.54 3.06
540 550 3.131223 ACAGATCGTTATGACTGGAGTGG 59.869 47.826 0.00 0.00 33.02 4.00
597 607 3.843422 TCCCATGTTTGGAACTCATGTT 58.157 40.909 0.00 0.00 46.92 2.71
603 613 3.434309 CCATCTTCCCATGTTTGGAACT 58.566 45.455 0.00 0.00 46.92 3.01
614 642 0.687757 CCGAGTCTCCCATCTTCCCA 60.688 60.000 0.00 0.00 0.00 4.37
633 662 2.554032 GGCAATGGTGTATGTCTATGGC 59.446 50.000 0.00 0.00 0.00 4.40
635 664 3.742882 CGAGGCAATGGTGTATGTCTATG 59.257 47.826 0.00 0.00 30.18 2.23
636 665 3.388024 ACGAGGCAATGGTGTATGTCTAT 59.612 43.478 0.00 0.00 30.18 1.98
637 666 2.764010 ACGAGGCAATGGTGTATGTCTA 59.236 45.455 0.00 0.00 30.18 2.59
638 667 1.555075 ACGAGGCAATGGTGTATGTCT 59.445 47.619 0.00 0.00 33.37 3.41
639 668 2.024176 ACGAGGCAATGGTGTATGTC 57.976 50.000 0.00 0.00 0.00 3.06
640 669 2.083774 CAACGAGGCAATGGTGTATGT 58.916 47.619 0.00 0.00 0.00 2.29
656 685 5.168526 TCTTTGTCTTTTCATCCACAACG 57.831 39.130 0.00 0.00 0.00 4.10
682 711 1.459209 CAAAATACGCGACACAGCTCA 59.541 47.619 15.93 0.00 34.40 4.26
688 717 1.382088 GCTTTGCAAAATACGCGACAC 59.618 47.619 15.93 0.00 0.00 3.67
694 723 5.581605 AGGTGATATGCTTTGCAAAATACG 58.418 37.500 13.84 2.46 43.62 3.06
777 806 1.467920 CAGCCACAAGATCCCCTTTC 58.532 55.000 0.00 0.00 31.42 2.62
799 828 2.356741 GCTTCCAACTATACCCTTGCCA 60.357 50.000 0.00 0.00 0.00 4.92
803 832 4.229582 TGATTGGCTTCCAACTATACCCTT 59.770 41.667 0.00 0.00 46.95 3.95
807 836 3.002348 GCGTGATTGGCTTCCAACTATAC 59.998 47.826 0.00 0.00 46.95 1.47
808 837 3.202906 GCGTGATTGGCTTCCAACTATA 58.797 45.455 0.00 0.00 46.95 1.31
809 838 2.017049 GCGTGATTGGCTTCCAACTAT 58.983 47.619 0.00 0.00 46.95 2.12
810 839 1.448985 GCGTGATTGGCTTCCAACTA 58.551 50.000 0.00 0.00 46.95 2.24
811 840 1.577328 CGCGTGATTGGCTTCCAACT 61.577 55.000 0.00 0.00 46.95 3.16
812 841 1.154225 CGCGTGATTGGCTTCCAAC 60.154 57.895 0.00 0.00 46.95 3.77
814 843 1.741401 CTCGCGTGATTGGCTTCCA 60.741 57.895 5.77 0.00 0.00 3.53
817 846 2.358615 TGCTCGCGTGATTGGCTT 60.359 55.556 13.13 0.00 0.00 4.35
855 884 2.435938 ACGAATCGCCGTGGCATT 60.436 55.556 12.06 9.59 41.70 3.56
861 890 0.742505 TTAGATGGACGAATCGCCGT 59.257 50.000 1.15 6.55 46.43 5.68
976 1005 2.327343 GCAAGTGCATCACGAGGCA 61.327 57.895 1.63 1.63 46.53 4.75
985 1014 1.270550 GGCTGTGTAAAGCAAGTGCAT 59.729 47.619 6.00 0.00 45.43 3.96
1021 1059 1.334869 GACACTGGTTCTGCTGTTTGG 59.665 52.381 0.00 0.00 0.00 3.28
1104 1142 2.125912 CTCTCCACGACGCCCTTG 60.126 66.667 0.00 0.00 0.00 3.61
1176 1214 1.382009 TCCCTGCTGCCCGTATGTA 60.382 57.895 0.00 0.00 0.00 2.29
1179 1217 2.687200 TGTCCCTGCTGCCCGTAT 60.687 61.111 0.00 0.00 0.00 3.06
1231 1269 1.608717 ATGACGCCCTTCTTCTCGCT 61.609 55.000 0.00 0.00 0.00 4.93
1249 1287 3.450457 AGCTTCTCCTTGATGTTCTCGAT 59.550 43.478 0.00 0.00 0.00 3.59
1462 1500 3.134127 CTGCAAAGGTAGCGGGGC 61.134 66.667 0.00 0.00 34.75 5.80
1463 1501 0.394352 ATTCTGCAAAGGTAGCGGGG 60.394 55.000 0.00 0.00 38.87 5.73
1534 1589 3.305813 CCAACGACCAAGTGAGCTAGTTA 60.306 47.826 0.00 0.00 0.00 2.24
1554 1609 3.385749 GAATTCGGGCGCTCCTCCA 62.386 63.158 7.64 0.00 0.00 3.86
1555 1610 2.589159 GAATTCGGGCGCTCCTCC 60.589 66.667 7.64 0.00 0.00 4.30
1556 1611 1.224722 GATGAATTCGGGCGCTCCTC 61.225 60.000 7.64 1.25 0.00 3.71
1557 1612 1.227674 GATGAATTCGGGCGCTCCT 60.228 57.895 7.64 0.00 0.00 3.69
1558 1613 1.227674 AGATGAATTCGGGCGCTCC 60.228 57.895 7.64 6.04 0.00 4.70
1559 1614 1.502163 CCAGATGAATTCGGGCGCTC 61.502 60.000 7.64 0.06 32.69 5.03
1560 1615 1.524621 CCAGATGAATTCGGGCGCT 60.525 57.895 7.64 0.00 32.69 5.92
1561 1616 2.546494 CCCAGATGAATTCGGGCGC 61.546 63.158 0.00 0.00 38.29 6.53
1562 1617 0.748005 AACCCAGATGAATTCGGGCG 60.748 55.000 14.22 4.83 40.05 6.13
1563 1618 1.474330 AAACCCAGATGAATTCGGGC 58.526 50.000 14.22 0.78 40.05 6.13
1564 1619 4.270008 ACTTAAACCCAGATGAATTCGGG 58.730 43.478 13.05 13.05 41.32 5.14
1565 1620 5.897377 AACTTAAACCCAGATGAATTCGG 57.103 39.130 0.04 0.00 0.00 4.30
1566 1621 6.523201 CGAAAACTTAAACCCAGATGAATTCG 59.477 38.462 0.04 0.00 0.00 3.34
1567 1622 7.368059 ACGAAAACTTAAACCCAGATGAATTC 58.632 34.615 0.00 0.00 0.00 2.17
1568 1623 7.284919 ACGAAAACTTAAACCCAGATGAATT 57.715 32.000 0.00 0.00 0.00 2.17
1569 1624 6.894339 ACGAAAACTTAAACCCAGATGAAT 57.106 33.333 0.00 0.00 0.00 2.57
1570 1625 6.702716 AACGAAAACTTAAACCCAGATGAA 57.297 33.333 0.00 0.00 0.00 2.57
1571 1626 6.095720 ACAAACGAAAACTTAAACCCAGATGA 59.904 34.615 0.00 0.00 0.00 2.92
1586 1641 6.969828 AGGCAAATTGTAAACAAACGAAAA 57.030 29.167 0.00 0.00 39.55 2.29
1641 1723 1.134521 CCACAGCATACCATACACGGT 60.135 52.381 0.00 0.00 43.46 4.83
1643 1725 2.309528 ACCACAGCATACCATACACG 57.690 50.000 0.00 0.00 0.00 4.49
1700 1782 9.860898 GTTATAGGAGAATTCATGTTTGCTTTT 57.139 29.630 8.44 0.00 0.00 2.27
1701 1783 8.470002 GGTTATAGGAGAATTCATGTTTGCTTT 58.530 33.333 8.44 0.00 0.00 3.51
1702 1784 7.615365 TGGTTATAGGAGAATTCATGTTTGCTT 59.385 33.333 8.44 0.00 0.00 3.91
1703 1785 7.067494 GTGGTTATAGGAGAATTCATGTTTGCT 59.933 37.037 8.44 0.00 0.00 3.91
1704 1786 7.148086 TGTGGTTATAGGAGAATTCATGTTTGC 60.148 37.037 8.44 0.00 0.00 3.68
1705 1787 8.184192 GTGTGGTTATAGGAGAATTCATGTTTG 58.816 37.037 8.44 0.00 0.00 2.93
1706 1788 7.339466 GGTGTGGTTATAGGAGAATTCATGTTT 59.661 37.037 8.44 0.00 0.00 2.83
1707 1789 6.828785 GGTGTGGTTATAGGAGAATTCATGTT 59.171 38.462 8.44 0.00 0.00 2.71
1708 1790 6.069673 TGGTGTGGTTATAGGAGAATTCATGT 60.070 38.462 8.44 0.00 0.00 3.21
1709 1791 6.260936 GTGGTGTGGTTATAGGAGAATTCATG 59.739 42.308 8.44 0.00 0.00 3.07
1710 1792 6.069673 TGTGGTGTGGTTATAGGAGAATTCAT 60.070 38.462 8.44 0.00 0.00 2.57
1711 1793 5.249622 TGTGGTGTGGTTATAGGAGAATTCA 59.750 40.000 8.44 0.00 0.00 2.57
1712 1794 5.741011 TGTGGTGTGGTTATAGGAGAATTC 58.259 41.667 0.00 0.00 0.00 2.17
1713 1795 5.772393 TGTGGTGTGGTTATAGGAGAATT 57.228 39.130 0.00 0.00 0.00 2.17
1714 1796 5.772393 TTGTGGTGTGGTTATAGGAGAAT 57.228 39.130 0.00 0.00 0.00 2.40
1715 1797 5.570205 TTTGTGGTGTGGTTATAGGAGAA 57.430 39.130 0.00 0.00 0.00 2.87
1716 1798 5.570205 TTTTGTGGTGTGGTTATAGGAGA 57.430 39.130 0.00 0.00 0.00 3.71
1717 1799 9.052759 GTATATTTTGTGGTGTGGTTATAGGAG 57.947 37.037 0.00 0.00 0.00 3.69
1718 1800 8.549731 TGTATATTTTGTGGTGTGGTTATAGGA 58.450 33.333 0.00 0.00 0.00 2.94
1719 1801 8.617809 GTGTATATTTTGTGGTGTGGTTATAGG 58.382 37.037 0.00 0.00 0.00 2.57
1720 1802 9.168451 TGTGTATATTTTGTGGTGTGGTTATAG 57.832 33.333 0.00 0.00 0.00 1.31
1721 1803 9.168451 CTGTGTATATTTTGTGGTGTGGTTATA 57.832 33.333 0.00 0.00 0.00 0.98
1722 1804 7.122055 CCTGTGTATATTTTGTGGTGTGGTTAT 59.878 37.037 0.00 0.00 0.00 1.89
1723 1805 6.431543 CCTGTGTATATTTTGTGGTGTGGTTA 59.568 38.462 0.00 0.00 0.00 2.85
1724 1806 5.242838 CCTGTGTATATTTTGTGGTGTGGTT 59.757 40.000 0.00 0.00 0.00 3.67
1725 1807 4.764823 CCTGTGTATATTTTGTGGTGTGGT 59.235 41.667 0.00 0.00 0.00 4.16
1726 1808 5.007034 TCCTGTGTATATTTTGTGGTGTGG 58.993 41.667 0.00 0.00 0.00 4.17
1727 1809 6.757897 ATCCTGTGTATATTTTGTGGTGTG 57.242 37.500 0.00 0.00 0.00 3.82
1728 1810 7.338449 GGTTATCCTGTGTATATTTTGTGGTGT 59.662 37.037 0.00 0.00 0.00 4.16
1729 1811 7.556275 AGGTTATCCTGTGTATATTTTGTGGTG 59.444 37.037 0.00 0.00 43.33 4.17
1730 1812 7.639378 AGGTTATCCTGTGTATATTTTGTGGT 58.361 34.615 0.00 0.00 43.33 4.16
1746 1828 1.910580 CGTGGGGTGCAGGTTATCCT 61.911 60.000 0.00 0.00 46.37 3.24
1747 1829 1.451387 CGTGGGGTGCAGGTTATCC 60.451 63.158 0.00 0.00 0.00 2.59
1748 1830 0.180406 ATCGTGGGGTGCAGGTTATC 59.820 55.000 0.00 0.00 0.00 1.75
1749 1831 0.180406 GATCGTGGGGTGCAGGTTAT 59.820 55.000 0.00 0.00 0.00 1.89
1750 1832 1.195442 TGATCGTGGGGTGCAGGTTA 61.195 55.000 0.00 0.00 0.00 2.85
1751 1833 2.063015 TTGATCGTGGGGTGCAGGTT 62.063 55.000 0.00 0.00 0.00 3.50
1752 1834 1.852157 ATTGATCGTGGGGTGCAGGT 61.852 55.000 0.00 0.00 0.00 4.00
1753 1835 0.680921 AATTGATCGTGGGGTGCAGG 60.681 55.000 0.00 0.00 0.00 4.85
1754 1836 0.734889 GAATTGATCGTGGGGTGCAG 59.265 55.000 0.00 0.00 0.00 4.41
1755 1837 0.679640 GGAATTGATCGTGGGGTGCA 60.680 55.000 0.00 0.00 0.00 4.57
1756 1838 0.679640 TGGAATTGATCGTGGGGTGC 60.680 55.000 0.00 0.00 0.00 5.01
1757 1839 1.949525 GATGGAATTGATCGTGGGGTG 59.050 52.381 0.00 0.00 0.00 4.61
1758 1840 1.846439 AGATGGAATTGATCGTGGGGT 59.154 47.619 0.00 0.00 0.00 4.95
1759 1841 2.645838 AGATGGAATTGATCGTGGGG 57.354 50.000 0.00 0.00 0.00 4.96
1760 1842 5.877012 CCTATTAGATGGAATTGATCGTGGG 59.123 44.000 0.00 0.00 0.00 4.61
1761 1843 6.467677 ACCTATTAGATGGAATTGATCGTGG 58.532 40.000 0.00 0.00 0.00 4.94
1762 1844 7.969536 AACCTATTAGATGGAATTGATCGTG 57.030 36.000 0.00 0.00 0.00 4.35
1763 1845 8.980481 AAAACCTATTAGATGGAATTGATCGT 57.020 30.769 0.00 0.00 0.00 3.73
1764 1846 9.669353 CAAAAACCTATTAGATGGAATTGATCG 57.331 33.333 0.00 0.00 0.00 3.69
1774 1856 6.015940 GGGAGCCATCAAAAACCTATTAGATG 60.016 42.308 0.00 0.00 34.25 2.90
1775 1857 6.071320 GGGAGCCATCAAAAACCTATTAGAT 58.929 40.000 0.00 0.00 0.00 1.98
1776 1858 5.445964 GGGAGCCATCAAAAACCTATTAGA 58.554 41.667 0.00 0.00 0.00 2.10
1777 1859 4.275936 CGGGAGCCATCAAAAACCTATTAG 59.724 45.833 0.00 0.00 0.00 1.73
1778 1860 4.204012 CGGGAGCCATCAAAAACCTATTA 58.796 43.478 0.00 0.00 0.00 0.98
1779 1861 3.023832 CGGGAGCCATCAAAAACCTATT 58.976 45.455 0.00 0.00 0.00 1.73
1780 1862 2.654863 CGGGAGCCATCAAAAACCTAT 58.345 47.619 0.00 0.00 0.00 2.57
1781 1863 2.122783 CGGGAGCCATCAAAAACCTA 57.877 50.000 0.00 0.00 0.00 3.08
1782 1864 2.961424 CGGGAGCCATCAAAAACCT 58.039 52.632 0.00 0.00 0.00 3.50
1966 2079 3.047877 CGTTCCCCACGCCAAGAC 61.048 66.667 0.00 0.00 43.37 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.