Multiple sequence alignment - TraesCS7B01G484500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G484500 chr7B 100.000 2726 0 0 1 2726 741589303 741586578 0.000000e+00 5035.0
1 TraesCS7B01G484500 chr7B 93.859 1840 90 4 408 2244 741558418 741560237 0.000000e+00 2750.0
2 TraesCS7B01G484500 chr7B 83.350 2060 236 53 444 2476 741620232 741618253 0.000000e+00 1805.0
3 TraesCS7B01G484500 chr7B 83.325 2045 250 47 447 2464 741548872 741550852 0.000000e+00 1803.0
4 TraesCS7B01G484500 chr7B 95.429 350 13 3 1 348 590401755 590401407 3.070000e-154 555.0
5 TraesCS7B01G484500 chr7D 92.107 2065 143 11 408 2464 634677505 634679557 0.000000e+00 2892.0
6 TraesCS7B01G484500 chr7D 85.934 1756 182 30 425 2158 634710153 634708441 0.000000e+00 1814.0
7 TraesCS7B01G484500 chr7D 83.081 2051 249 56 444 2464 634669504 634671486 0.000000e+00 1775.0
8 TraesCS7B01G484500 chr7D 94.382 89 4 1 2464 2552 634679653 634679740 4.730000e-28 135.0
9 TraesCS7B01G484500 chr7D 93.258 89 5 1 2556 2643 634679871 634679959 2.200000e-26 130.0
10 TraesCS7B01G484500 chr7A 90.132 1439 128 9 1030 2464 731283062 731281634 0.000000e+00 1858.0
11 TraesCS7B01G484500 chr7A 86.177 1758 171 35 425 2158 731252536 731254245 0.000000e+00 1834.0
12 TraesCS7B01G484500 chr7A 83.739 2011 241 43 489 2476 731389588 731387641 0.000000e+00 1823.0
13 TraesCS7B01G484500 chr7A 87.105 1613 141 24 847 2458 731236443 731237989 0.000000e+00 1764.0
14 TraesCS7B01G484500 chr7A 83.552 1526 187 29 412 1921 731501728 731500251 0.000000e+00 1369.0
15 TraesCS7B01G484500 chr7A 90.271 627 55 6 413 1035 731292478 731291854 0.000000e+00 815.0
16 TraesCS7B01G484500 chr7A 80.854 867 123 24 611 1467 731345960 731345127 2.290000e-180 641.0
17 TraesCS7B01G484500 chr7A 82.060 602 68 15 1908 2476 731385797 731385203 6.830000e-131 477.0
18 TraesCS7B01G484500 chr7A 84.615 377 48 5 2090 2464 731019029 731019397 1.540000e-97 366.0
19 TraesCS7B01G484500 chr4B 84.539 1604 196 26 412 2005 625077733 625079294 0.000000e+00 1541.0
20 TraesCS7B01G484500 chr4B 97.059 340 8 2 1 338 75746462 75746123 3.050000e-159 571.0
21 TraesCS7B01G484500 chr1B 97.093 344 7 3 1 341 603540003 603539660 6.550000e-161 577.0
22 TraesCS7B01G484500 chr1B 95.415 349 14 2 1 347 60663643 60663295 3.070000e-154 555.0
23 TraesCS7B01G484500 chr3B 97.059 340 8 2 1 338 738395224 738395563 3.050000e-159 571.0
24 TraesCS7B01G484500 chr3B 97.050 339 9 1 1 338 1674390 1674728 1.100000e-158 569.0
25 TraesCS7B01G484500 chr3B 96.755 339 10 1 1 338 419444968 419444630 5.100000e-157 564.0
26 TraesCS7B01G484500 chr4A 96.755 339 9 2 1 338 666177287 666176950 5.100000e-157 564.0
27 TraesCS7B01G484500 chr2B 95.677 347 10 5 4 348 672186899 672186556 1.100000e-153 553.0
28 TraesCS7B01G484500 chr3D 94.444 54 2 1 363 415 450238909 450238962 6.260000e-12 82.4
29 TraesCS7B01G484500 chr6A 100.000 39 0 0 363 401 56068600 56068562 3.770000e-09 73.1
30 TraesCS7B01G484500 chr6B 94.595 37 2 0 751 787 666095625 666095661 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G484500 chr7B 741586578 741589303 2725 True 5035.000000 5035 100.0000 1 2726 1 chr7B.!!$R2 2725
1 TraesCS7B01G484500 chr7B 741558418 741560237 1819 False 2750.000000 2750 93.8590 408 2244 1 chr7B.!!$F2 1836
2 TraesCS7B01G484500 chr7B 741618253 741620232 1979 True 1805.000000 1805 83.3500 444 2476 1 chr7B.!!$R3 2032
3 TraesCS7B01G484500 chr7B 741548872 741550852 1980 False 1803.000000 1803 83.3250 447 2464 1 chr7B.!!$F1 2017
4 TraesCS7B01G484500 chr7D 634708441 634710153 1712 True 1814.000000 1814 85.9340 425 2158 1 chr7D.!!$R1 1733
5 TraesCS7B01G484500 chr7D 634669504 634671486 1982 False 1775.000000 1775 83.0810 444 2464 1 chr7D.!!$F1 2020
6 TraesCS7B01G484500 chr7D 634677505 634679959 2454 False 1052.333333 2892 93.2490 408 2643 3 chr7D.!!$F2 2235
7 TraesCS7B01G484500 chr7A 731281634 731283062 1428 True 1858.000000 1858 90.1320 1030 2464 1 chr7A.!!$R1 1434
8 TraesCS7B01G484500 chr7A 731252536 731254245 1709 False 1834.000000 1834 86.1770 425 2158 1 chr7A.!!$F3 1733
9 TraesCS7B01G484500 chr7A 731236443 731237989 1546 False 1764.000000 1764 87.1050 847 2458 1 chr7A.!!$F2 1611
10 TraesCS7B01G484500 chr7A 731500251 731501728 1477 True 1369.000000 1369 83.5520 412 1921 1 chr7A.!!$R4 1509
11 TraesCS7B01G484500 chr7A 731385203 731389588 4385 True 1150.000000 1823 82.8995 489 2476 2 chr7A.!!$R5 1987
12 TraesCS7B01G484500 chr7A 731291854 731292478 624 True 815.000000 815 90.2710 413 1035 1 chr7A.!!$R2 622
13 TraesCS7B01G484500 chr7A 731345127 731345960 833 True 641.000000 641 80.8540 611 1467 1 chr7A.!!$R3 856
14 TraesCS7B01G484500 chr4B 625077733 625079294 1561 False 1541.000000 1541 84.5390 412 2005 1 chr4B.!!$F1 1593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.030504 TGCCGAACTCGTTCACGTAA 59.969 50.0 10.10 0.0 39.46 3.18 F
843 880 0.731514 TTCGATCGCGTTCACAGGTC 60.732 55.0 16.75 0.0 38.98 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1577 0.108520 GATACAACGCGGGAGAACCA 60.109 55.0 12.47 0.00 40.22 3.67 R
2674 5403 0.032615 ACTGGCTAGCCTGCTCTAGT 60.033 55.0 33.56 24.34 38.58 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.279784 CGAAGCCCTGCCGAGATC 60.280 66.667 0.00 0.00 0.00 2.75
20 21 2.279784 GAAGCCCTGCCGAGATCG 60.280 66.667 0.00 0.00 39.44 3.69
21 22 4.537433 AAGCCCTGCCGAGATCGC 62.537 66.667 0.00 0.00 38.18 4.58
26 27 3.966104 CTGCCGAGATCGCCGCTA 61.966 66.667 10.65 0.00 38.18 4.26
27 28 4.266070 TGCCGAGATCGCCGCTAC 62.266 66.667 10.65 1.86 38.18 3.58
28 29 3.967335 GCCGAGATCGCCGCTACT 61.967 66.667 2.74 0.00 38.18 2.57
29 30 2.722487 CCGAGATCGCCGCTACTT 59.278 61.111 0.00 0.00 38.18 2.24
30 31 1.370657 CCGAGATCGCCGCTACTTC 60.371 63.158 0.00 0.00 38.18 3.01
31 32 1.722852 CGAGATCGCCGCTACTTCG 60.723 63.158 0.00 0.00 0.00 3.79
32 33 1.647629 GAGATCGCCGCTACTTCGA 59.352 57.895 0.00 0.00 36.63 3.71
33 34 0.657951 GAGATCGCCGCTACTTCGAC 60.658 60.000 0.00 0.00 34.92 4.20
34 35 1.657794 GATCGCCGCTACTTCGACC 60.658 63.158 0.00 0.00 34.92 4.79
35 36 2.332362 GATCGCCGCTACTTCGACCA 62.332 60.000 0.00 0.00 34.92 4.02
36 37 2.609183 ATCGCCGCTACTTCGACCAC 62.609 60.000 0.00 0.00 34.92 4.16
37 38 2.508663 GCCGCTACTTCGACCACC 60.509 66.667 0.00 0.00 0.00 4.61
38 39 2.967397 CCGCTACTTCGACCACCA 59.033 61.111 0.00 0.00 0.00 4.17
39 40 1.445582 CCGCTACTTCGACCACCAC 60.446 63.158 0.00 0.00 0.00 4.16
40 41 1.800315 CGCTACTTCGACCACCACG 60.800 63.158 0.00 0.00 0.00 4.94
41 42 2.092882 GCTACTTCGACCACCACGC 61.093 63.158 0.00 0.00 0.00 5.34
42 43 1.445582 CTACTTCGACCACCACGCC 60.446 63.158 0.00 0.00 0.00 5.68
43 44 3.271706 TACTTCGACCACCACGCCG 62.272 63.158 0.00 0.00 0.00 6.46
44 45 4.657824 CTTCGACCACCACGCCGT 62.658 66.667 0.00 0.00 0.00 5.68
45 46 4.651008 TTCGACCACCACGCCGTC 62.651 66.667 0.00 0.00 0.00 4.79
57 58 2.742372 GCCGTCGTGTTGCTGGAT 60.742 61.111 0.00 0.00 0.00 3.41
58 59 2.740714 GCCGTCGTGTTGCTGGATC 61.741 63.158 0.00 0.00 0.00 3.36
59 60 1.079819 CCGTCGTGTTGCTGGATCT 60.080 57.895 0.00 0.00 0.00 2.75
60 61 1.078759 CCGTCGTGTTGCTGGATCTC 61.079 60.000 0.00 0.00 0.00 2.75
61 62 1.078759 CGTCGTGTTGCTGGATCTCC 61.079 60.000 0.00 0.00 0.00 3.71
62 63 0.037326 GTCGTGTTGCTGGATCTCCA 60.037 55.000 0.00 0.00 45.30 3.86
63 64 0.904649 TCGTGTTGCTGGATCTCCAT 59.095 50.000 0.00 0.00 46.46 3.41
64 65 1.134699 TCGTGTTGCTGGATCTCCATC 60.135 52.381 0.00 0.00 46.46 3.51
65 66 1.405933 CGTGTTGCTGGATCTCCATCA 60.406 52.381 0.00 0.00 46.46 3.07
66 67 2.715046 GTGTTGCTGGATCTCCATCAA 58.285 47.619 10.62 10.62 46.30 2.57
68 69 2.425143 TTGCTGGATCTCCATCAACC 57.575 50.000 10.62 0.00 44.40 3.77
69 70 1.588239 TGCTGGATCTCCATCAACCT 58.412 50.000 0.00 0.00 46.46 3.50
70 71 1.487976 TGCTGGATCTCCATCAACCTC 59.512 52.381 0.00 0.00 46.46 3.85
71 72 1.767681 GCTGGATCTCCATCAACCTCT 59.232 52.381 0.00 0.00 46.46 3.69
72 73 2.224257 GCTGGATCTCCATCAACCTCTC 60.224 54.545 0.00 0.00 46.46 3.20
73 74 2.368221 CTGGATCTCCATCAACCTCTCC 59.632 54.545 0.00 0.00 46.46 3.71
74 75 2.022625 TGGATCTCCATCAACCTCTCCT 60.023 50.000 0.00 0.00 42.01 3.69
75 76 3.044894 GGATCTCCATCAACCTCTCCTT 58.955 50.000 0.00 0.00 35.64 3.36
76 77 3.070878 GGATCTCCATCAACCTCTCCTTC 59.929 52.174 0.00 0.00 35.64 3.46
77 78 2.472029 TCTCCATCAACCTCTCCTTCC 58.528 52.381 0.00 0.00 0.00 3.46
78 79 1.488393 CTCCATCAACCTCTCCTTCCC 59.512 57.143 0.00 0.00 0.00 3.97
79 80 0.548510 CCATCAACCTCTCCTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
80 81 0.548510 CATCAACCTCTCCTTCCCCC 59.451 60.000 0.00 0.00 0.00 5.40
81 82 0.423544 ATCAACCTCTCCTTCCCCCT 59.576 55.000 0.00 0.00 0.00 4.79
82 83 0.196118 TCAACCTCTCCTTCCCCCTT 59.804 55.000 0.00 0.00 0.00 3.95
83 84 0.329596 CAACCTCTCCTTCCCCCTTG 59.670 60.000 0.00 0.00 0.00 3.61
84 85 1.501654 AACCTCTCCTTCCCCCTTGC 61.502 60.000 0.00 0.00 0.00 4.01
85 86 1.617839 CCTCTCCTTCCCCCTTGCT 60.618 63.158 0.00 0.00 0.00 3.91
86 87 1.606531 CTCTCCTTCCCCCTTGCTG 59.393 63.158 0.00 0.00 0.00 4.41
87 88 1.919600 CTCTCCTTCCCCCTTGCTGG 61.920 65.000 0.00 0.00 0.00 4.85
88 89 1.925455 CTCCTTCCCCCTTGCTGGA 60.925 63.158 0.00 0.00 38.35 3.86
89 90 1.230281 TCCTTCCCCCTTGCTGGAT 60.230 57.895 0.00 0.00 38.35 3.41
90 91 1.228510 CCTTCCCCCTTGCTGGATC 59.771 63.158 0.00 0.00 38.35 3.36
91 92 1.574526 CCTTCCCCCTTGCTGGATCA 61.575 60.000 0.00 0.00 38.35 2.92
92 93 0.332632 CTTCCCCCTTGCTGGATCAA 59.667 55.000 0.00 0.00 38.35 2.57
93 94 0.332632 TTCCCCCTTGCTGGATCAAG 59.667 55.000 0.00 0.00 42.23 3.02
94 95 0.549902 TCCCCCTTGCTGGATCAAGA 60.550 55.000 0.00 0.00 44.61 3.02
95 96 0.332632 CCCCCTTGCTGGATCAAGAA 59.667 55.000 0.00 0.00 44.61 2.52
96 97 1.684248 CCCCCTTGCTGGATCAAGAAG 60.684 57.143 0.00 2.15 44.61 2.85
97 98 1.684248 CCCCTTGCTGGATCAAGAAGG 60.684 57.143 16.02 16.02 44.61 3.46
98 99 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
99 100 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
100 101 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
101 102 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
102 103 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
103 104 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
104 105 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
105 106 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
106 107 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
107 108 2.100087 GGATCAAGAAGGAGGAGACGTC 59.900 54.545 7.70 7.70 0.00 4.34
108 109 2.588464 TCAAGAAGGAGGAGACGTCT 57.412 50.000 20.18 20.18 0.00 4.18
109 110 2.877866 TCAAGAAGGAGGAGACGTCTT 58.122 47.619 21.08 4.10 0.00 3.01
110 111 2.820787 TCAAGAAGGAGGAGACGTCTTC 59.179 50.000 21.08 18.81 41.37 2.87
113 114 4.436368 GGAGGAGACGTCTTCCCA 57.564 61.111 21.08 0.00 42.11 4.37
114 115 2.667348 GGAGGAGACGTCTTCCCAA 58.333 57.895 21.08 0.00 42.11 4.12
115 116 0.246910 GGAGGAGACGTCTTCCCAAC 59.753 60.000 21.08 14.11 42.11 3.77
116 117 0.246910 GAGGAGACGTCTTCCCAACC 59.753 60.000 21.08 14.81 0.00 3.77
117 118 1.080025 GGAGACGTCTTCCCAACCG 60.080 63.158 21.08 0.00 0.00 4.44
118 119 1.664306 GAGACGTCTTCCCAACCGT 59.336 57.895 21.08 0.00 36.04 4.83
119 120 0.883833 GAGACGTCTTCCCAACCGTA 59.116 55.000 21.08 0.00 33.03 4.02
120 121 0.600057 AGACGTCTTCCCAACCGTAC 59.400 55.000 13.58 0.00 33.03 3.67
121 122 0.730494 GACGTCTTCCCAACCGTACG 60.730 60.000 8.69 8.69 33.03 3.67
122 123 1.286880 CGTCTTCCCAACCGTACGT 59.713 57.895 15.21 0.00 0.00 3.57
123 124 1.005294 CGTCTTCCCAACCGTACGTG 61.005 60.000 15.21 6.71 0.00 4.49
124 125 0.032540 GTCTTCCCAACCGTACGTGT 59.967 55.000 15.21 8.99 0.00 4.49
125 126 0.032403 TCTTCCCAACCGTACGTGTG 59.968 55.000 15.21 11.18 0.00 3.82
126 127 0.249573 CTTCCCAACCGTACGTGTGT 60.250 55.000 15.21 1.81 0.00 3.72
127 128 0.177604 TTCCCAACCGTACGTGTGTT 59.822 50.000 15.21 8.50 0.00 3.32
128 129 0.530211 TCCCAACCGTACGTGTGTTG 60.530 55.000 21.61 21.61 39.20 3.33
129 130 0.530211 CCCAACCGTACGTGTGTTGA 60.530 55.000 26.91 0.00 41.38 3.18
130 131 1.288350 CCAACCGTACGTGTGTTGAA 58.712 50.000 26.91 0.00 41.38 2.69
131 132 1.004715 CCAACCGTACGTGTGTTGAAC 60.005 52.381 26.91 1.04 41.38 3.18
132 133 0.922717 AACCGTACGTGTGTTGAACG 59.077 50.000 15.21 0.00 46.32 3.95
133 134 1.199859 CCGTACGTGTGTTGAACGC 59.800 57.895 15.21 1.20 44.80 4.84
138 139 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
139 140 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
140 141 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
141 142 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
142 143 2.665185 GTTGAACGCGGAGGTGCT 60.665 61.111 12.47 0.00 0.00 4.40
143 144 2.664851 TTGAACGCGGAGGTGCTG 60.665 61.111 12.47 0.00 0.00 4.41
144 145 3.454587 TTGAACGCGGAGGTGCTGT 62.455 57.895 12.47 0.00 0.00 4.40
145 146 3.112709 GAACGCGGAGGTGCTGTC 61.113 66.667 12.47 0.00 0.00 3.51
146 147 4.681978 AACGCGGAGGTGCTGTCC 62.682 66.667 12.47 0.00 0.00 4.02
151 152 2.741092 GGAGGTGCTGTCCGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
152 153 1.374758 GGAGGTGCTGTCCGTTCAG 60.375 63.158 0.60 0.60 38.35 3.02
159 160 3.425578 CTGTCCGTTCAGCACTAGG 57.574 57.895 0.00 0.00 0.00 3.02
160 161 0.888619 CTGTCCGTTCAGCACTAGGA 59.111 55.000 0.00 0.00 0.00 2.94
161 162 1.478510 CTGTCCGTTCAGCACTAGGAT 59.521 52.381 0.00 0.00 33.15 3.24
162 163 1.476891 TGTCCGTTCAGCACTAGGATC 59.523 52.381 0.00 0.00 33.15 3.36
163 164 1.476891 GTCCGTTCAGCACTAGGATCA 59.523 52.381 0.00 0.00 33.15 2.92
164 165 2.101582 GTCCGTTCAGCACTAGGATCAT 59.898 50.000 0.00 0.00 33.15 2.45
165 166 2.362397 TCCGTTCAGCACTAGGATCATC 59.638 50.000 0.00 0.00 0.00 2.92
166 167 2.389059 CGTTCAGCACTAGGATCATCG 58.611 52.381 0.00 0.00 0.00 3.84
167 168 2.748605 GTTCAGCACTAGGATCATCGG 58.251 52.381 0.00 0.00 0.00 4.18
168 169 2.073252 TCAGCACTAGGATCATCGGT 57.927 50.000 0.00 0.00 0.00 4.69
169 170 1.683385 TCAGCACTAGGATCATCGGTG 59.317 52.381 8.43 8.43 0.00 4.94
170 171 1.683385 CAGCACTAGGATCATCGGTGA 59.317 52.381 0.00 0.00 39.04 4.02
172 173 2.968574 AGCACTAGGATCATCGGTGATT 59.031 45.455 13.46 0.00 44.96 2.57
173 174 3.389329 AGCACTAGGATCATCGGTGATTT 59.611 43.478 13.46 7.21 44.96 2.17
174 175 3.496130 GCACTAGGATCATCGGTGATTTG 59.504 47.826 13.46 6.70 44.96 2.32
175 176 4.060900 CACTAGGATCATCGGTGATTTGG 58.939 47.826 13.46 9.01 44.96 3.28
176 177 3.967326 ACTAGGATCATCGGTGATTTGGA 59.033 43.478 13.46 0.00 44.96 3.53
177 178 4.594920 ACTAGGATCATCGGTGATTTGGAT 59.405 41.667 13.46 0.35 44.96 3.41
178 179 4.013267 AGGATCATCGGTGATTTGGATC 57.987 45.455 13.46 0.00 44.96 3.36
179 180 3.392285 AGGATCATCGGTGATTTGGATCA 59.608 43.478 13.46 0.00 44.96 2.92
189 190 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
190 191 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
191 192 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
192 193 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
193 194 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
194 195 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
195 196 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
196 197 0.037882 TCACGACGAGTACGACTCCT 60.038 55.000 0.00 0.00 42.12 3.69
197 198 0.369589 CACGACGAGTACGACTCCTC 59.630 60.000 0.00 6.66 42.12 3.71
198 199 0.037882 ACGACGAGTACGACTCCTCA 60.038 55.000 0.00 0.00 42.12 3.86
199 200 1.073964 CGACGAGTACGACTCCTCAA 58.926 55.000 8.73 0.00 42.12 3.02
200 201 1.201899 CGACGAGTACGACTCCTCAAC 60.202 57.143 8.73 0.00 42.12 3.18
201 202 1.130186 GACGAGTACGACTCCTCAACC 59.870 57.143 8.73 0.00 42.12 3.77
202 203 0.450983 CGAGTACGACTCCTCAACCC 59.549 60.000 8.73 0.00 42.12 4.11
203 204 0.816373 GAGTACGACTCCTCAACCCC 59.184 60.000 0.00 0.00 39.28 4.95
204 205 0.964358 AGTACGACTCCTCAACCCCG 60.964 60.000 0.00 0.00 0.00 5.73
205 206 1.075482 TACGACTCCTCAACCCCGT 59.925 57.895 0.00 0.00 0.00 5.28
206 207 0.540365 TACGACTCCTCAACCCCGTT 60.540 55.000 0.00 0.00 0.00 4.44
207 208 1.080025 CGACTCCTCAACCCCGTTC 60.080 63.158 0.00 0.00 0.00 3.95
208 209 1.533469 CGACTCCTCAACCCCGTTCT 61.533 60.000 0.00 0.00 0.00 3.01
209 210 0.246910 GACTCCTCAACCCCGTTCTC 59.753 60.000 0.00 0.00 0.00 2.87
210 211 0.178929 ACTCCTCAACCCCGTTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
211 212 0.977395 CTCCTCAACCCCGTTCTCTT 59.023 55.000 0.00 0.00 0.00 2.85
212 213 0.685097 TCCTCAACCCCGTTCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
213 214 0.685097 CCTCAACCCCGTTCTCTTGA 59.315 55.000 0.00 0.00 0.00 3.02
214 215 1.071699 CCTCAACCCCGTTCTCTTGAA 59.928 52.381 0.00 0.00 0.00 2.69
215 216 2.143925 CTCAACCCCGTTCTCTTGAAC 58.856 52.381 0.00 0.00 46.59 3.18
223 224 1.157585 GTTCTCTTGAACGCTTCCCC 58.842 55.000 0.00 0.00 42.39 4.81
224 225 1.056660 TTCTCTTGAACGCTTCCCCT 58.943 50.000 0.00 0.00 0.00 4.79
225 226 0.608640 TCTCTTGAACGCTTCCCCTC 59.391 55.000 0.00 0.00 0.00 4.30
226 227 0.737715 CTCTTGAACGCTTCCCCTCG 60.738 60.000 0.00 0.00 0.00 4.63
227 228 2.358247 TTGAACGCTTCCCCTCGC 60.358 61.111 0.00 0.00 0.00 5.03
233 234 3.444737 GCTTCCCCTCGCGATCTA 58.555 61.111 10.36 0.00 0.00 1.98
234 235 1.007154 GCTTCCCCTCGCGATCTAC 60.007 63.158 10.36 0.00 0.00 2.59
235 236 1.735376 GCTTCCCCTCGCGATCTACA 61.735 60.000 10.36 0.00 0.00 2.74
236 237 0.744874 CTTCCCCTCGCGATCTACAA 59.255 55.000 10.36 0.00 0.00 2.41
237 238 0.744874 TTCCCCTCGCGATCTACAAG 59.255 55.000 10.36 0.00 0.00 3.16
238 239 1.107538 TCCCCTCGCGATCTACAAGG 61.108 60.000 10.36 5.11 0.00 3.61
239 240 1.364171 CCCTCGCGATCTACAAGGG 59.636 63.158 10.36 11.56 40.75 3.95
240 241 1.392710 CCCTCGCGATCTACAAGGGT 61.393 60.000 10.36 0.00 41.56 4.34
241 242 1.315690 CCTCGCGATCTACAAGGGTA 58.684 55.000 10.36 0.00 0.00 3.69
242 243 1.887198 CCTCGCGATCTACAAGGGTAT 59.113 52.381 10.36 0.00 0.00 2.73
243 244 2.351835 CCTCGCGATCTACAAGGGTATG 60.352 54.545 10.36 0.00 0.00 2.39
244 245 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
245 246 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
254 255 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
255 256 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
256 257 3.336509 AGGGTATGTAGATGCACTCCT 57.663 47.619 0.00 0.00 0.00 3.69
257 258 3.235200 AGGGTATGTAGATGCACTCCTC 58.765 50.000 0.00 0.00 0.00 3.71
258 259 3.116939 AGGGTATGTAGATGCACTCCTCT 60.117 47.826 0.00 0.00 0.00 3.69
259 260 3.257127 GGGTATGTAGATGCACTCCTCTC 59.743 52.174 0.00 0.00 0.00 3.20
260 261 4.148838 GGTATGTAGATGCACTCCTCTCT 58.851 47.826 0.00 0.00 0.00 3.10
261 262 4.217550 GGTATGTAGATGCACTCCTCTCTC 59.782 50.000 0.00 0.00 0.00 3.20
262 263 3.660970 TGTAGATGCACTCCTCTCTCT 57.339 47.619 0.00 0.00 0.00 3.10
263 264 3.550820 TGTAGATGCACTCCTCTCTCTC 58.449 50.000 0.00 0.00 0.00 3.20
264 265 1.679139 AGATGCACTCCTCTCTCTCG 58.321 55.000 0.00 0.00 0.00 4.04
265 266 1.064758 AGATGCACTCCTCTCTCTCGT 60.065 52.381 0.00 0.00 0.00 4.18
266 267 1.748493 GATGCACTCCTCTCTCTCGTT 59.252 52.381 0.00 0.00 0.00 3.85
267 268 0.884514 TGCACTCCTCTCTCTCGTTG 59.115 55.000 0.00 0.00 0.00 4.10
268 269 0.457681 GCACTCCTCTCTCTCGTTGC 60.458 60.000 0.00 0.00 0.00 4.17
269 270 1.173043 CACTCCTCTCTCTCGTTGCT 58.827 55.000 0.00 0.00 0.00 3.91
270 271 2.360844 CACTCCTCTCTCTCGTTGCTA 58.639 52.381 0.00 0.00 0.00 3.49
271 272 2.354510 CACTCCTCTCTCTCGTTGCTAG 59.645 54.545 0.00 0.00 0.00 3.42
272 273 2.237643 ACTCCTCTCTCTCGTTGCTAGA 59.762 50.000 0.00 0.00 0.00 2.43
273 274 3.118038 ACTCCTCTCTCTCGTTGCTAGAT 60.118 47.826 0.00 0.00 0.00 1.98
274 275 3.210227 TCCTCTCTCTCGTTGCTAGATG 58.790 50.000 0.00 0.00 0.00 2.90
275 276 3.118223 TCCTCTCTCTCGTTGCTAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
276 277 3.629855 CCTCTCTCTCGTTGCTAGATGAA 59.370 47.826 0.00 0.00 0.00 2.57
277 278 4.497340 CCTCTCTCTCGTTGCTAGATGAAC 60.497 50.000 0.00 0.00 0.00 3.18
278 279 4.265893 TCTCTCTCGTTGCTAGATGAACT 58.734 43.478 0.00 0.00 0.00 3.01
279 280 4.702612 TCTCTCTCGTTGCTAGATGAACTT 59.297 41.667 0.00 0.00 0.00 2.66
280 281 4.987832 TCTCTCGTTGCTAGATGAACTTC 58.012 43.478 0.00 0.00 0.00 3.01
281 282 4.459337 TCTCTCGTTGCTAGATGAACTTCA 59.541 41.667 0.00 0.00 0.00 3.02
282 283 5.126222 TCTCTCGTTGCTAGATGAACTTCAT 59.874 40.000 3.80 3.80 40.34 2.57
283 284 6.318900 TCTCTCGTTGCTAGATGAACTTCATA 59.681 38.462 4.16 0.00 37.20 2.15
284 285 6.499172 TCTCGTTGCTAGATGAACTTCATAG 58.501 40.000 4.16 1.29 37.20 2.23
285 286 6.318900 TCTCGTTGCTAGATGAACTTCATAGA 59.681 38.462 4.16 0.00 37.20 1.98
286 287 7.013750 TCTCGTTGCTAGATGAACTTCATAGAT 59.986 37.037 4.16 0.00 37.20 1.98
287 288 7.492524 TCGTTGCTAGATGAACTTCATAGATT 58.507 34.615 4.16 0.00 37.20 2.40
288 289 7.436376 TCGTTGCTAGATGAACTTCATAGATTG 59.564 37.037 4.16 0.00 37.20 2.67
289 290 7.436376 CGTTGCTAGATGAACTTCATAGATTGA 59.564 37.037 4.16 0.00 37.20 2.57
290 291 9.270640 GTTGCTAGATGAACTTCATAGATTGAT 57.729 33.333 4.16 0.00 37.20 2.57
291 292 9.486497 TTGCTAGATGAACTTCATAGATTGATC 57.514 33.333 4.16 0.00 37.20 2.92
292 293 8.868103 TGCTAGATGAACTTCATAGATTGATCT 58.132 33.333 4.16 0.00 37.20 2.75
293 294 9.709495 GCTAGATGAACTTCATAGATTGATCTT 57.291 33.333 4.16 0.00 37.20 2.40
295 296 8.905660 AGATGAACTTCATAGATTGATCTTGG 57.094 34.615 4.16 0.00 37.20 3.61
296 297 8.492782 AGATGAACTTCATAGATTGATCTTGGT 58.507 33.333 4.16 0.00 37.20 3.67
297 298 7.854557 TGAACTTCATAGATTGATCTTGGTG 57.145 36.000 0.00 0.00 38.32 4.17
298 299 7.623630 TGAACTTCATAGATTGATCTTGGTGA 58.376 34.615 0.00 0.24 38.32 4.02
299 300 8.102676 TGAACTTCATAGATTGATCTTGGTGAA 58.897 33.333 0.00 7.20 38.32 3.18
300 301 8.503458 AACTTCATAGATTGATCTTGGTGAAG 57.497 34.615 23.77 23.77 44.39 3.02
301 302 6.541641 ACTTCATAGATTGATCTTGGTGAAGC 59.458 38.462 24.47 0.00 43.71 3.86
302 303 5.052481 TCATAGATTGATCTTGGTGAAGCG 58.948 41.667 0.00 0.00 38.32 4.68
303 304 3.340814 AGATTGATCTTGGTGAAGCGT 57.659 42.857 0.00 0.00 31.97 5.07
304 305 4.471904 AGATTGATCTTGGTGAAGCGTA 57.528 40.909 0.00 0.00 31.97 4.42
305 306 4.437239 AGATTGATCTTGGTGAAGCGTAG 58.563 43.478 0.00 0.00 31.97 3.51
306 307 3.953712 TTGATCTTGGTGAAGCGTAGA 57.046 42.857 0.00 0.00 0.00 2.59
307 308 3.953712 TGATCTTGGTGAAGCGTAGAA 57.046 42.857 0.00 0.00 0.00 2.10
308 309 4.471904 TGATCTTGGTGAAGCGTAGAAT 57.528 40.909 0.00 0.00 0.00 2.40
309 310 4.832248 TGATCTTGGTGAAGCGTAGAATT 58.168 39.130 0.00 0.00 0.00 2.17
310 311 5.245531 TGATCTTGGTGAAGCGTAGAATTT 58.754 37.500 0.00 0.00 0.00 1.82
311 312 5.705441 TGATCTTGGTGAAGCGTAGAATTTT 59.295 36.000 0.00 0.00 0.00 1.82
312 313 6.206634 TGATCTTGGTGAAGCGTAGAATTTTT 59.793 34.615 0.00 0.00 0.00 1.94
334 335 5.815233 TTTATTTTCTGCAACATTCCCCA 57.185 34.783 0.00 0.00 0.00 4.96
335 336 5.815233 TTATTTTCTGCAACATTCCCCAA 57.185 34.783 0.00 0.00 0.00 4.12
336 337 3.467374 TTTTCTGCAACATTCCCCAAC 57.533 42.857 0.00 0.00 0.00 3.77
337 338 2.079170 TTCTGCAACATTCCCCAACA 57.921 45.000 0.00 0.00 0.00 3.33
338 339 2.079170 TCTGCAACATTCCCCAACAA 57.921 45.000 0.00 0.00 0.00 2.83
339 340 1.686052 TCTGCAACATTCCCCAACAAC 59.314 47.619 0.00 0.00 0.00 3.32
340 341 1.688197 CTGCAACATTCCCCAACAACT 59.312 47.619 0.00 0.00 0.00 3.16
341 342 2.102925 CTGCAACATTCCCCAACAACTT 59.897 45.455 0.00 0.00 0.00 2.66
342 343 2.158986 TGCAACATTCCCCAACAACTTG 60.159 45.455 0.00 0.00 0.00 3.16
343 344 2.102252 GCAACATTCCCCAACAACTTGA 59.898 45.455 0.00 0.00 0.00 3.02
344 345 3.244181 GCAACATTCCCCAACAACTTGAT 60.244 43.478 0.00 0.00 0.00 2.57
345 346 4.559153 CAACATTCCCCAACAACTTGATC 58.441 43.478 0.00 0.00 0.00 2.92
346 347 3.843422 ACATTCCCCAACAACTTGATCA 58.157 40.909 0.00 0.00 0.00 2.92
347 348 4.419282 ACATTCCCCAACAACTTGATCAT 58.581 39.130 0.00 0.00 0.00 2.45
348 349 4.463891 ACATTCCCCAACAACTTGATCATC 59.536 41.667 0.00 0.00 0.00 2.92
349 350 4.387026 TTCCCCAACAACTTGATCATCT 57.613 40.909 0.00 0.00 0.00 2.90
350 351 4.387026 TCCCCAACAACTTGATCATCTT 57.613 40.909 0.00 0.00 0.00 2.40
351 352 4.739793 TCCCCAACAACTTGATCATCTTT 58.260 39.130 0.00 0.00 0.00 2.52
352 353 4.523943 TCCCCAACAACTTGATCATCTTTG 59.476 41.667 0.00 3.15 0.00 2.77
353 354 4.322198 CCCCAACAACTTGATCATCTTTGG 60.322 45.833 13.22 12.63 33.44 3.28
354 355 4.281688 CCCAACAACTTGATCATCTTTGGT 59.718 41.667 15.45 8.12 32.01 3.67
355 356 5.464168 CCAACAACTTGATCATCTTTGGTC 58.536 41.667 13.22 0.00 33.28 4.02
356 357 5.009911 CCAACAACTTGATCATCTTTGGTCA 59.990 40.000 13.22 0.00 41.26 4.02
357 358 5.695851 ACAACTTGATCATCTTTGGTCAC 57.304 39.130 13.22 0.00 42.67 3.67
358 359 5.380043 ACAACTTGATCATCTTTGGTCACT 58.620 37.500 13.22 0.00 42.67 3.41
359 360 5.240183 ACAACTTGATCATCTTTGGTCACTG 59.760 40.000 13.22 0.00 42.67 3.66
360 361 5.233083 ACTTGATCATCTTTGGTCACTGA 57.767 39.130 0.00 0.00 42.67 3.41
361 362 5.624159 ACTTGATCATCTTTGGTCACTGAA 58.376 37.500 0.00 0.00 42.67 3.02
362 363 5.704515 ACTTGATCATCTTTGGTCACTGAAG 59.295 40.000 0.00 0.00 42.67 3.02
363 364 4.005650 TGATCATCTTTGGTCACTGAAGC 58.994 43.478 0.00 0.00 38.07 3.86
364 365 2.416747 TCATCTTTGGTCACTGAAGCG 58.583 47.619 0.00 0.00 0.00 4.68
365 366 2.037121 TCATCTTTGGTCACTGAAGCGA 59.963 45.455 0.00 0.00 0.00 4.93
366 367 2.839486 TCTTTGGTCACTGAAGCGAT 57.161 45.000 0.00 0.00 0.00 4.58
367 368 3.953712 TCTTTGGTCACTGAAGCGATA 57.046 42.857 0.00 0.00 0.00 2.92
368 369 4.471904 TCTTTGGTCACTGAAGCGATAT 57.528 40.909 0.00 0.00 0.00 1.63
369 370 4.183865 TCTTTGGTCACTGAAGCGATATG 58.816 43.478 0.00 0.00 0.00 1.78
370 371 1.939974 TGGTCACTGAAGCGATATGC 58.060 50.000 0.00 0.00 46.98 3.14
379 380 4.320971 GCGATATGCCGAACTCGT 57.679 55.556 0.00 0.00 37.76 4.18
380 381 2.589890 GCGATATGCCGAACTCGTT 58.410 52.632 0.00 0.00 37.76 3.85
381 382 0.503117 GCGATATGCCGAACTCGTTC 59.497 55.000 0.00 0.00 37.76 3.95
382 383 1.835121 CGATATGCCGAACTCGTTCA 58.165 50.000 10.10 0.00 39.46 3.18
383 384 1.517276 CGATATGCCGAACTCGTTCAC 59.483 52.381 10.10 2.50 39.46 3.18
384 385 1.517276 GATATGCCGAACTCGTTCACG 59.483 52.381 10.10 0.00 39.46 4.35
385 386 0.241749 TATGCCGAACTCGTTCACGT 59.758 50.000 10.10 5.49 39.46 4.49
386 387 0.241749 ATGCCGAACTCGTTCACGTA 59.758 50.000 10.10 0.07 39.46 3.57
387 388 0.030504 TGCCGAACTCGTTCACGTAA 59.969 50.000 10.10 0.00 39.46 3.18
388 389 1.336148 TGCCGAACTCGTTCACGTAAT 60.336 47.619 10.10 0.00 39.46 1.89
389 390 2.095314 TGCCGAACTCGTTCACGTAATA 60.095 45.455 10.10 0.00 39.46 0.98
390 391 2.916716 GCCGAACTCGTTCACGTAATAA 59.083 45.455 10.10 0.00 39.46 1.40
391 392 3.364621 GCCGAACTCGTTCACGTAATAAA 59.635 43.478 10.10 0.00 39.46 1.40
392 393 4.489841 GCCGAACTCGTTCACGTAATAAAG 60.490 45.833 10.10 0.00 39.46 1.85
393 394 4.489841 CCGAACTCGTTCACGTAATAAAGC 60.490 45.833 10.10 0.00 39.46 3.51
394 395 4.322804 CGAACTCGTTCACGTAATAAAGCT 59.677 41.667 10.10 0.00 39.46 3.74
395 396 5.509272 CGAACTCGTTCACGTAATAAAGCTA 59.491 40.000 10.10 0.00 39.46 3.32
396 397 6.195983 CGAACTCGTTCACGTAATAAAGCTAT 59.804 38.462 10.10 0.00 39.46 2.97
397 398 6.807708 ACTCGTTCACGTAATAAAGCTATG 57.192 37.500 0.00 0.00 40.80 2.23
398 399 5.231568 ACTCGTTCACGTAATAAAGCTATGC 59.768 40.000 0.00 0.00 40.80 3.14
399 400 5.345702 TCGTTCACGTAATAAAGCTATGCT 58.654 37.500 0.00 0.00 39.81 3.79
400 401 5.808540 TCGTTCACGTAATAAAGCTATGCTT 59.191 36.000 0.00 0.00 44.83 3.91
401 402 6.475207 CGTTCACGTAATAAAGCTATGCTTT 58.525 36.000 19.26 19.26 45.98 3.51
402 403 6.408039 CGTTCACGTAATAAAGCTATGCTTTG 59.592 38.462 22.80 11.25 44.96 2.77
403 404 7.673082 CGTTCACGTAATAAAGCTATGCTTTGA 60.673 37.037 22.80 10.86 44.96 2.69
569 585 7.875327 AATTAGTGTATTTGTTCGGCCTAAT 57.125 32.000 0.00 0.00 0.00 1.73
575 591 7.554835 AGTGTATTTGTTCGGCCTAATTGATAA 59.445 33.333 0.00 0.00 0.00 1.75
599 615 3.365265 GGCTTGTGTTCGGCCCAG 61.365 66.667 0.00 0.00 39.96 4.45
625 641 2.533916 TGCATGGCTTGATGGGTTTAA 58.466 42.857 4.32 0.00 0.00 1.52
695 712 1.533731 CACGTGGAAACCATTAGCGTT 59.466 47.619 7.95 0.00 35.28 4.84
715 732 6.030849 GCGTTTGTATGATATATCTCGCTCT 58.969 40.000 13.79 0.00 37.55 4.09
716 733 6.021074 GCGTTTGTATGATATATCTCGCTCTG 60.021 42.308 13.79 0.19 37.55 3.35
732 764 1.020462 TCTGGTGGTATAGGGGGACA 58.980 55.000 0.00 0.00 0.00 4.02
744 778 1.527370 GGGGACAGTCATGCTACCC 59.473 63.158 2.17 15.98 40.17 3.69
843 880 0.731514 TTCGATCGCGTTCACAGGTC 60.732 55.000 16.75 0.00 38.98 3.85
920 957 2.543777 TTATTCGCTAGGCCATCCAC 57.456 50.000 5.01 0.00 33.74 4.02
1047 1087 1.128200 CGACCCTCCAATACATCCCA 58.872 55.000 0.00 0.00 0.00 4.37
1307 1348 3.056313 GCATTGACAAGCTCCGGGC 62.056 63.158 0.00 3.80 42.19 6.13
1479 1520 2.873170 TTAGCGAACGCATGTCAAAG 57.127 45.000 20.66 0.00 44.88 2.77
1502 1543 2.650116 ATTCTCAGACGCCGCCACT 61.650 57.895 0.00 0.00 0.00 4.00
1521 1562 1.405463 CTAGCTCCATGTGTCGCTACA 59.595 52.381 0.00 0.00 34.14 2.74
1536 1577 2.804572 CGCTACAGGCAGCATAGACATT 60.805 50.000 0.00 0.00 41.88 2.71
1539 1580 1.283029 ACAGGCAGCATAGACATTGGT 59.717 47.619 0.00 0.00 0.00 3.67
1673 1724 4.741342 TCTAGCAGTGATATGATGATGCG 58.259 43.478 0.00 0.00 38.65 4.73
1727 1779 2.576648 GTCCTTTCCCTCCCATGTAAGT 59.423 50.000 0.00 0.00 0.00 2.24
1758 1810 1.066136 CTACATGCGCCGATCTCATG 58.934 55.000 4.18 1.97 42.15 3.07
1772 1825 6.145534 GCCGATCTCATGTCGTATTTATTTGA 59.854 38.462 3.85 0.00 37.39 2.69
1870 1923 2.095059 GCATCGTGTTCTTTGAGCCAAT 60.095 45.455 0.00 0.00 0.00 3.16
1874 1931 3.003275 TCGTGTTCTTTGAGCCAATTCAC 59.997 43.478 0.00 0.00 0.00 3.18
1944 2001 6.633500 TTCCTAGGTTGTTTGTTTGATCTG 57.367 37.500 9.08 0.00 0.00 2.90
1975 2034 8.340443 GTTTAGTTGGTCGTAAATCTTGAGTTT 58.660 33.333 0.00 0.00 0.00 2.66
2064 2125 3.493176 GCTTGATTGCTGAACCTTGGTTT 60.493 43.478 6.49 0.00 0.00 3.27
2068 2129 4.646945 TGATTGCTGAACCTTGGTTTTGTA 59.353 37.500 6.49 0.36 0.00 2.41
2084 2145 6.321181 TGGTTTTGTATTGGGAGATCTAATGC 59.679 38.462 0.00 0.00 0.00 3.56
2159 2223 5.927115 ACAAGTTGAAGATTCGTTCTCCTAC 59.073 40.000 10.54 0.00 31.78 3.18
2180 2244 1.678101 GGCCAGCTAAATGTGATGGAC 59.322 52.381 0.00 0.00 32.55 4.02
2269 2333 1.396648 CTCGCCGCACACAAATATCAA 59.603 47.619 0.00 0.00 0.00 2.57
2278 2342 5.552472 CGCACACAAATATCAAAAATAGCGC 60.552 40.000 0.00 0.00 32.52 5.92
2378 2444 5.296151 TGGAGTCATGTTCTCTGTTCTTT 57.704 39.130 15.82 0.00 33.06 2.52
2391 4895 3.257624 TCTGTTCTTTAGACCGTCCTTCC 59.742 47.826 0.00 0.00 0.00 3.46
2409 4913 1.072331 TCCTTCTTCAGACCCACAAGC 59.928 52.381 0.00 0.00 0.00 4.01
2410 4914 1.528129 CTTCTTCAGACCCACAAGCC 58.472 55.000 0.00 0.00 0.00 4.35
2411 4915 0.843309 TTCTTCAGACCCACAAGCCA 59.157 50.000 0.00 0.00 0.00 4.75
2412 4916 0.108585 TCTTCAGACCCACAAGCCAC 59.891 55.000 0.00 0.00 0.00 5.01
2413 4917 0.179020 CTTCAGACCCACAAGCCACA 60.179 55.000 0.00 0.00 0.00 4.17
2414 4918 0.257328 TTCAGACCCACAAGCCACAA 59.743 50.000 0.00 0.00 0.00 3.33
2415 4919 0.179020 TCAGACCCACAAGCCACAAG 60.179 55.000 0.00 0.00 0.00 3.16
2416 4920 1.151450 AGACCCACAAGCCACAAGG 59.849 57.895 0.00 0.00 38.23 3.61
2464 4968 3.726004 TGGCCGATCCAGTGACAT 58.274 55.556 0.00 0.00 40.72 3.06
2466 4970 0.752658 TGGCCGATCCAGTGACATAG 59.247 55.000 0.00 0.00 40.72 2.23
2470 4974 2.799917 GCCGATCCAGTGACATAGACAC 60.800 54.545 0.00 0.00 38.38 3.67
2510 5111 2.404995 GGCACCATCTCAGCAGCAC 61.405 63.158 0.00 0.00 0.00 4.40
2516 5117 0.805322 CATCTCAGCAGCACGAGGTC 60.805 60.000 10.99 0.00 0.00 3.85
2643 5372 9.202273 TGAAATTGTTCTTTTTATGCATGTACC 57.798 29.630 10.16 0.00 34.60 3.34
2644 5373 9.202273 GAAATTGTTCTTTTTATGCATGTACCA 57.798 29.630 10.16 0.00 0.00 3.25
2645 5374 8.761575 AATTGTTCTTTTTATGCATGTACCAG 57.238 30.769 10.16 0.00 0.00 4.00
2646 5375 6.266168 TGTTCTTTTTATGCATGTACCAGG 57.734 37.500 10.16 0.00 0.00 4.45
2647 5376 6.007076 TGTTCTTTTTATGCATGTACCAGGA 58.993 36.000 10.16 0.00 0.00 3.86
2648 5377 6.663093 TGTTCTTTTTATGCATGTACCAGGAT 59.337 34.615 10.16 0.00 0.00 3.24
2649 5378 7.178274 TGTTCTTTTTATGCATGTACCAGGATT 59.822 33.333 10.16 0.00 0.00 3.01
2650 5379 7.333528 TCTTTTTATGCATGTACCAGGATTC 57.666 36.000 10.16 0.00 0.00 2.52
2651 5380 6.889177 TCTTTTTATGCATGTACCAGGATTCA 59.111 34.615 10.16 0.00 0.00 2.57
2652 5381 7.395772 TCTTTTTATGCATGTACCAGGATTCAA 59.604 33.333 10.16 0.00 0.00 2.69
2653 5382 7.473735 TTTTATGCATGTACCAGGATTCAAA 57.526 32.000 10.16 0.00 0.00 2.69
2654 5383 4.989279 ATGCATGTACCAGGATTCAAAC 57.011 40.909 0.00 0.00 0.00 2.93
2655 5384 3.760738 TGCATGTACCAGGATTCAAACA 58.239 40.909 0.00 0.00 0.00 2.83
2656 5385 3.505680 TGCATGTACCAGGATTCAAACAC 59.494 43.478 0.00 0.00 0.00 3.32
2657 5386 3.505680 GCATGTACCAGGATTCAAACACA 59.494 43.478 0.00 0.00 0.00 3.72
2658 5387 4.615912 GCATGTACCAGGATTCAAACACAC 60.616 45.833 0.00 0.00 0.00 3.82
2659 5388 4.157849 TGTACCAGGATTCAAACACACA 57.842 40.909 0.00 0.00 0.00 3.72
2660 5389 4.527944 TGTACCAGGATTCAAACACACAA 58.472 39.130 0.00 0.00 0.00 3.33
2661 5390 4.336993 TGTACCAGGATTCAAACACACAAC 59.663 41.667 0.00 0.00 0.00 3.32
2662 5391 2.693074 ACCAGGATTCAAACACACAACC 59.307 45.455 0.00 0.00 0.00 3.77
2663 5392 2.958355 CCAGGATTCAAACACACAACCT 59.042 45.455 0.00 0.00 0.00 3.50
2664 5393 4.141287 CCAGGATTCAAACACACAACCTA 58.859 43.478 0.00 0.00 0.00 3.08
2665 5394 4.023193 CCAGGATTCAAACACACAACCTAC 60.023 45.833 0.00 0.00 0.00 3.18
2666 5395 4.023193 CAGGATTCAAACACACAACCTACC 60.023 45.833 0.00 0.00 0.00 3.18
2667 5396 3.886505 GGATTCAAACACACAACCTACCA 59.113 43.478 0.00 0.00 0.00 3.25
2668 5397 4.023193 GGATTCAAACACACAACCTACCAG 60.023 45.833 0.00 0.00 0.00 4.00
2669 5398 3.637911 TCAAACACACAACCTACCAGT 57.362 42.857 0.00 0.00 0.00 4.00
2670 5399 3.275143 TCAAACACACAACCTACCAGTG 58.725 45.455 0.00 0.00 39.12 3.66
2671 5400 3.055021 TCAAACACACAACCTACCAGTGA 60.055 43.478 0.00 0.00 37.05 3.41
2672 5401 2.910688 ACACACAACCTACCAGTGAG 57.089 50.000 0.00 0.00 37.05 3.51
2673 5402 1.416401 ACACACAACCTACCAGTGAGG 59.584 52.381 0.00 0.00 45.67 3.86
2674 5403 1.691976 CACACAACCTACCAGTGAGGA 59.308 52.381 4.91 0.00 41.22 3.71
2675 5404 1.692519 ACACAACCTACCAGTGAGGAC 59.307 52.381 4.91 0.00 41.22 3.85
2676 5405 1.971357 CACAACCTACCAGTGAGGACT 59.029 52.381 4.91 0.00 41.22 3.85
2677 5406 3.162666 CACAACCTACCAGTGAGGACTA 58.837 50.000 4.91 0.00 41.22 2.59
2678 5407 3.193691 CACAACCTACCAGTGAGGACTAG 59.806 52.174 4.91 0.00 41.22 2.57
2679 5408 3.075582 ACAACCTACCAGTGAGGACTAGA 59.924 47.826 4.91 0.00 41.22 2.43
2680 5409 3.655615 ACCTACCAGTGAGGACTAGAG 57.344 52.381 4.91 0.00 41.22 2.43
2681 5410 2.303175 CCTACCAGTGAGGACTAGAGC 58.697 57.143 0.00 0.00 41.22 4.09
2682 5411 2.357257 CCTACCAGTGAGGACTAGAGCA 60.357 54.545 0.00 0.00 41.22 4.26
2683 5412 1.846007 ACCAGTGAGGACTAGAGCAG 58.154 55.000 0.00 0.00 41.22 4.24
2684 5413 1.110442 CCAGTGAGGACTAGAGCAGG 58.890 60.000 0.00 0.00 41.22 4.85
2685 5414 0.459489 CAGTGAGGACTAGAGCAGGC 59.541 60.000 0.00 0.00 0.00 4.85
2686 5415 0.334676 AGTGAGGACTAGAGCAGGCT 59.665 55.000 0.00 0.00 30.26 4.58
2687 5416 1.566703 AGTGAGGACTAGAGCAGGCTA 59.433 52.381 0.00 0.00 30.26 3.93
2688 5417 1.953686 GTGAGGACTAGAGCAGGCTAG 59.046 57.143 0.00 6.71 42.77 3.42
2689 5418 0.958822 GAGGACTAGAGCAGGCTAGC 59.041 60.000 6.04 6.04 41.21 3.42
2690 5419 0.469144 AGGACTAGAGCAGGCTAGCC 60.469 60.000 27.19 27.19 41.21 3.93
2691 5420 0.757188 GGACTAGAGCAGGCTAGCCA 60.757 60.000 34.70 12.79 41.21 4.75
2692 5421 0.673437 GACTAGAGCAGGCTAGCCAG 59.327 60.000 34.70 28.07 41.21 4.85
2693 5422 0.032615 ACTAGAGCAGGCTAGCCAGT 60.033 55.000 34.70 24.09 41.21 4.00
2694 5423 1.118838 CTAGAGCAGGCTAGCCAGTT 58.881 55.000 34.70 25.50 38.92 3.16
2695 5424 1.484240 CTAGAGCAGGCTAGCCAGTTT 59.516 52.381 34.70 19.21 38.92 2.66
2696 5425 0.035630 AGAGCAGGCTAGCCAGTTTG 60.036 55.000 34.70 24.19 38.92 2.93
2697 5426 1.652167 GAGCAGGCTAGCCAGTTTGC 61.652 60.000 34.70 31.62 38.92 3.68
2698 5427 2.704808 GCAGGCTAGCCAGTTTGCC 61.705 63.158 34.70 15.84 45.21 4.52
2700 5429 3.278157 GGCTAGCCAGTTTGCCAC 58.722 61.111 29.33 0.00 44.34 5.01
2701 5430 2.343426 GGCTAGCCAGTTTGCCACC 61.343 63.158 29.33 0.00 44.34 4.61
2702 5431 1.603455 GCTAGCCAGTTTGCCACCA 60.603 57.895 2.29 0.00 0.00 4.17
2703 5432 1.178534 GCTAGCCAGTTTGCCACCAA 61.179 55.000 2.29 0.00 0.00 3.67
2704 5433 1.549203 CTAGCCAGTTTGCCACCAAT 58.451 50.000 0.00 0.00 0.00 3.16
2705 5434 1.203052 CTAGCCAGTTTGCCACCAATG 59.797 52.381 0.00 0.00 0.00 2.82
2706 5435 0.760189 AGCCAGTTTGCCACCAATGT 60.760 50.000 0.00 0.00 0.00 2.71
2707 5436 0.600782 GCCAGTTTGCCACCAATGTG 60.601 55.000 0.00 0.00 42.39 3.21
2708 5437 0.600782 CCAGTTTGCCACCAATGTGC 60.601 55.000 0.00 0.00 41.35 4.57
2709 5438 0.390124 CAGTTTGCCACCAATGTGCT 59.610 50.000 0.00 0.00 41.35 4.40
2710 5439 1.122227 AGTTTGCCACCAATGTGCTT 58.878 45.000 0.00 0.00 41.35 3.91
2711 5440 1.485895 AGTTTGCCACCAATGTGCTTT 59.514 42.857 0.00 0.00 41.35 3.51
2712 5441 1.598601 GTTTGCCACCAATGTGCTTTG 59.401 47.619 0.00 0.00 41.35 2.77
2713 5442 0.829333 TTGCCACCAATGTGCTTTGT 59.171 45.000 0.00 0.00 41.35 2.83
2714 5443 1.697284 TGCCACCAATGTGCTTTGTA 58.303 45.000 0.00 0.00 41.35 2.41
2715 5444 2.246469 TGCCACCAATGTGCTTTGTAT 58.754 42.857 0.00 0.00 41.35 2.29
2716 5445 3.425659 TGCCACCAATGTGCTTTGTATA 58.574 40.909 0.00 0.00 41.35 1.47
2717 5446 3.443329 TGCCACCAATGTGCTTTGTATAG 59.557 43.478 0.00 0.00 41.35 1.31
2718 5447 3.443681 GCCACCAATGTGCTTTGTATAGT 59.556 43.478 0.00 0.00 41.35 2.12
2719 5448 4.638421 GCCACCAATGTGCTTTGTATAGTA 59.362 41.667 0.00 0.00 41.35 1.82
2720 5449 5.299279 GCCACCAATGTGCTTTGTATAGTAT 59.701 40.000 0.00 0.00 41.35 2.12
2721 5450 6.728200 CCACCAATGTGCTTTGTATAGTATG 58.272 40.000 0.00 0.00 41.35 2.39
2722 5451 6.318648 CCACCAATGTGCTTTGTATAGTATGT 59.681 38.462 0.00 0.00 41.35 2.29
2723 5452 7.409697 CACCAATGTGCTTTGTATAGTATGTC 58.590 38.462 0.00 0.00 35.31 3.06
2724 5453 7.065683 CACCAATGTGCTTTGTATAGTATGTCA 59.934 37.037 0.00 0.00 35.31 3.58
2725 5454 7.609918 ACCAATGTGCTTTGTATAGTATGTCAA 59.390 33.333 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.537433 ATCTCGGCAGGGCTTCGC 62.537 66.667 0.00 0.00 0.00 4.70
2 3 2.279784 GATCTCGGCAGGGCTTCG 60.280 66.667 0.00 0.00 0.00 3.79
3 4 2.279784 CGATCTCGGCAGGGCTTC 60.280 66.667 0.00 0.00 35.37 3.86
4 5 4.537433 GCGATCTCGGCAGGGCTT 62.537 66.667 1.34 0.00 40.23 4.35
12 13 1.370657 GAAGTAGCGGCGATCTCGG 60.371 63.158 12.98 0.00 40.23 4.63
13 14 1.722852 CGAAGTAGCGGCGATCTCG 60.723 63.158 12.98 10.61 43.27 4.04
14 15 0.657951 GTCGAAGTAGCGGCGATCTC 60.658 60.000 12.98 0.75 36.37 2.75
15 16 1.355916 GTCGAAGTAGCGGCGATCT 59.644 57.895 12.98 0.56 36.37 2.75
16 17 1.657794 GGTCGAAGTAGCGGCGATC 60.658 63.158 12.98 0.00 36.61 3.69
17 18 2.412112 GGTCGAAGTAGCGGCGAT 59.588 61.111 12.98 7.15 36.61 4.58
18 19 3.057548 TGGTCGAAGTAGCGGCGA 61.058 61.111 12.98 0.00 36.61 5.54
19 20 2.879462 GTGGTCGAAGTAGCGGCG 60.879 66.667 0.51 0.51 36.61 6.46
20 21 2.508663 GGTGGTCGAAGTAGCGGC 60.509 66.667 0.00 0.00 34.63 6.53
21 22 1.445582 GTGGTGGTCGAAGTAGCGG 60.446 63.158 0.00 0.00 0.00 5.52
22 23 1.800315 CGTGGTGGTCGAAGTAGCG 60.800 63.158 0.00 0.00 0.00 4.26
23 24 2.092882 GCGTGGTGGTCGAAGTAGC 61.093 63.158 0.00 0.00 0.00 3.58
24 25 1.445582 GGCGTGGTGGTCGAAGTAG 60.446 63.158 0.00 0.00 0.00 2.57
25 26 2.652530 GGCGTGGTGGTCGAAGTA 59.347 61.111 0.00 0.00 0.00 2.24
26 27 4.657824 CGGCGTGGTGGTCGAAGT 62.658 66.667 0.00 0.00 37.14 3.01
27 28 4.657824 ACGGCGTGGTGGTCGAAG 62.658 66.667 13.76 0.00 38.63 3.79
28 29 4.651008 GACGGCGTGGTGGTCGAA 62.651 66.667 21.19 0.00 38.63 3.71
40 41 2.740714 GATCCAGCAACACGACGGC 61.741 63.158 0.00 0.00 0.00 5.68
41 42 1.078759 GAGATCCAGCAACACGACGG 61.079 60.000 0.00 0.00 0.00 4.79
42 43 1.078759 GGAGATCCAGCAACACGACG 61.079 60.000 0.00 0.00 35.64 5.12
43 44 0.037326 TGGAGATCCAGCAACACGAC 60.037 55.000 0.00 0.00 42.01 4.34
44 45 2.361189 TGGAGATCCAGCAACACGA 58.639 52.632 0.00 0.00 42.01 4.35
54 55 2.688477 AGGAGAGGTTGATGGAGATCC 58.312 52.381 0.00 0.00 0.00 3.36
55 56 3.070878 GGAAGGAGAGGTTGATGGAGATC 59.929 52.174 0.00 0.00 0.00 2.75
56 57 3.044894 GGAAGGAGAGGTTGATGGAGAT 58.955 50.000 0.00 0.00 0.00 2.75
57 58 2.472029 GGAAGGAGAGGTTGATGGAGA 58.528 52.381 0.00 0.00 0.00 3.71
58 59 1.488393 GGGAAGGAGAGGTTGATGGAG 59.512 57.143 0.00 0.00 0.00 3.86
59 60 1.584724 GGGAAGGAGAGGTTGATGGA 58.415 55.000 0.00 0.00 0.00 3.41
60 61 0.548510 GGGGAAGGAGAGGTTGATGG 59.451 60.000 0.00 0.00 0.00 3.51
61 62 0.548510 GGGGGAAGGAGAGGTTGATG 59.451 60.000 0.00 0.00 0.00 3.07
62 63 0.423544 AGGGGGAAGGAGAGGTTGAT 59.576 55.000 0.00 0.00 0.00 2.57
63 64 0.196118 AAGGGGGAAGGAGAGGTTGA 59.804 55.000 0.00 0.00 0.00 3.18
64 65 0.329596 CAAGGGGGAAGGAGAGGTTG 59.670 60.000 0.00 0.00 0.00 3.77
65 66 1.501654 GCAAGGGGGAAGGAGAGGTT 61.502 60.000 0.00 0.00 0.00 3.50
66 67 1.925972 GCAAGGGGGAAGGAGAGGT 60.926 63.158 0.00 0.00 0.00 3.85
67 68 1.617839 AGCAAGGGGGAAGGAGAGG 60.618 63.158 0.00 0.00 0.00 3.69
68 69 1.606531 CAGCAAGGGGGAAGGAGAG 59.393 63.158 0.00 0.00 0.00 3.20
69 70 1.925455 CCAGCAAGGGGGAAGGAGA 60.925 63.158 0.00 0.00 0.00 3.71
70 71 1.284841 ATCCAGCAAGGGGGAAGGAG 61.285 60.000 0.00 0.00 36.62 3.69
71 72 1.230281 ATCCAGCAAGGGGGAAGGA 60.230 57.895 0.00 0.00 36.62 3.36
72 73 1.228510 GATCCAGCAAGGGGGAAGG 59.771 63.158 0.00 0.00 36.62 3.46
73 74 0.332632 TTGATCCAGCAAGGGGGAAG 59.667 55.000 0.00 0.00 36.62 3.46
74 75 0.332632 CTTGATCCAGCAAGGGGGAA 59.667 55.000 0.00 0.00 41.15 3.97
75 76 0.549902 TCTTGATCCAGCAAGGGGGA 60.550 55.000 4.79 0.00 44.14 4.81
76 77 0.332632 TTCTTGATCCAGCAAGGGGG 59.667 55.000 4.79 0.00 44.14 5.40
77 78 1.684248 CCTTCTTGATCCAGCAAGGGG 60.684 57.143 4.79 4.42 44.14 4.79
78 79 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
79 80 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
80 81 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
81 82 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
82 83 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
83 84 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
84 85 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
85 86 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
86 87 2.100087 GACGTCTCCTCCTTCTTGATCC 59.900 54.545 8.70 0.00 0.00 3.36
87 88 3.020984 AGACGTCTCCTCCTTCTTGATC 58.979 50.000 13.58 0.00 0.00 2.92
88 89 3.094484 AGACGTCTCCTCCTTCTTGAT 57.906 47.619 13.58 0.00 0.00 2.57
89 90 2.588464 AGACGTCTCCTCCTTCTTGA 57.412 50.000 13.58 0.00 0.00 3.02
90 91 2.094442 GGAAGACGTCTCCTCCTTCTTG 60.094 54.545 23.46 0.00 36.28 3.02
91 92 2.172679 GGAAGACGTCTCCTCCTTCTT 58.827 52.381 23.46 4.82 36.28 2.52
92 93 1.617533 GGGAAGACGTCTCCTCCTTCT 60.618 57.143 27.43 8.78 36.28 2.85
93 94 0.818938 GGGAAGACGTCTCCTCCTTC 59.181 60.000 27.43 17.21 35.52 3.46
94 95 0.114560 TGGGAAGACGTCTCCTCCTT 59.885 55.000 27.43 10.16 0.00 3.36
95 96 0.114560 TTGGGAAGACGTCTCCTCCT 59.885 55.000 27.43 10.85 0.00 3.69
96 97 0.246910 GTTGGGAAGACGTCTCCTCC 59.753 60.000 22.91 22.91 0.00 4.30
97 98 0.246910 GGTTGGGAAGACGTCTCCTC 59.753 60.000 20.33 13.65 0.00 3.71
98 99 1.533469 CGGTTGGGAAGACGTCTCCT 61.533 60.000 20.33 3.47 0.00 3.69
99 100 1.080025 CGGTTGGGAAGACGTCTCC 60.080 63.158 20.33 19.97 0.00 3.71
100 101 0.883833 TACGGTTGGGAAGACGTCTC 59.116 55.000 20.33 12.14 40.38 3.36
101 102 0.600057 GTACGGTTGGGAAGACGTCT 59.400 55.000 13.58 13.58 40.38 4.18
102 103 0.730494 CGTACGGTTGGGAAGACGTC 60.730 60.000 7.70 7.70 40.38 4.34
103 104 1.286880 CGTACGGTTGGGAAGACGT 59.713 57.895 7.57 0.00 42.71 4.34
104 105 1.005294 CACGTACGGTTGGGAAGACG 61.005 60.000 21.06 0.00 36.42 4.18
105 106 0.032540 ACACGTACGGTTGGGAAGAC 59.967 55.000 21.06 0.00 0.00 3.01
106 107 0.032403 CACACGTACGGTTGGGAAGA 59.968 55.000 21.06 0.00 0.00 2.87
107 108 0.249573 ACACACGTACGGTTGGGAAG 60.250 55.000 21.06 4.49 0.00 3.46
108 109 0.177604 AACACACGTACGGTTGGGAA 59.822 50.000 21.06 0.00 0.00 3.97
109 110 0.530211 CAACACACGTACGGTTGGGA 60.530 55.000 21.06 0.00 38.52 4.37
110 111 0.530211 TCAACACACGTACGGTTGGG 60.530 55.000 25.39 17.76 41.59 4.12
111 112 1.004715 GTTCAACACACGTACGGTTGG 60.005 52.381 25.39 13.85 41.59 3.77
112 113 1.331334 CGTTCAACACACGTACGGTTG 60.331 52.381 22.19 22.19 42.39 3.77
113 114 0.922717 CGTTCAACACACGTACGGTT 59.077 50.000 21.06 11.24 32.80 4.44
114 115 1.481819 GCGTTCAACACACGTACGGT 61.482 55.000 21.06 11.73 39.92 4.83
115 116 1.199859 GCGTTCAACACACGTACGG 59.800 57.895 21.06 11.05 39.92 4.02
116 117 1.155158 CGCGTTCAACACACGTACG 60.155 57.895 15.01 15.01 39.92 3.67
117 118 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
118 119 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
119 120 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
120 121 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
121 122 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
122 123 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
123 124 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
124 125 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
125 126 2.665185 AGCACCTCCGCGTTCAAC 60.665 61.111 4.92 0.00 36.85 3.18
126 127 2.664851 CAGCACCTCCGCGTTCAA 60.665 61.111 4.92 0.00 36.85 2.69
127 128 3.858868 GACAGCACCTCCGCGTTCA 62.859 63.158 4.92 0.00 36.85 3.18
128 129 3.112709 GACAGCACCTCCGCGTTC 61.113 66.667 4.92 0.00 36.85 3.95
129 130 4.681978 GGACAGCACCTCCGCGTT 62.682 66.667 4.92 0.00 36.85 4.84
134 135 1.374758 CTGAACGGACAGCACCTCC 60.375 63.158 0.00 0.00 0.00 4.30
135 136 4.268687 CTGAACGGACAGCACCTC 57.731 61.111 0.00 0.00 0.00 3.85
141 142 0.888619 TCCTAGTGCTGAACGGACAG 59.111 55.000 6.73 6.73 40.43 3.51
142 143 1.476891 GATCCTAGTGCTGAACGGACA 59.523 52.381 0.00 0.00 36.26 4.02
143 144 1.476891 TGATCCTAGTGCTGAACGGAC 59.523 52.381 0.00 0.00 0.00 4.79
144 145 1.847328 TGATCCTAGTGCTGAACGGA 58.153 50.000 0.00 0.00 0.00 4.69
145 146 2.748605 GATGATCCTAGTGCTGAACGG 58.251 52.381 0.00 0.00 0.00 4.44
146 147 2.389059 CGATGATCCTAGTGCTGAACG 58.611 52.381 0.00 0.00 0.00 3.95
147 148 2.101582 ACCGATGATCCTAGTGCTGAAC 59.898 50.000 0.00 0.00 0.00 3.18
148 149 2.101415 CACCGATGATCCTAGTGCTGAA 59.899 50.000 0.00 0.00 0.00 3.02
149 150 1.683385 CACCGATGATCCTAGTGCTGA 59.317 52.381 0.00 0.00 0.00 4.26
150 151 1.683385 TCACCGATGATCCTAGTGCTG 59.317 52.381 0.00 0.00 0.00 4.41
151 152 2.073252 TCACCGATGATCCTAGTGCT 57.927 50.000 0.00 0.00 0.00 4.40
152 153 3.393089 AATCACCGATGATCCTAGTGC 57.607 47.619 0.00 0.00 45.26 4.40
153 154 4.060900 CCAAATCACCGATGATCCTAGTG 58.939 47.826 0.00 0.03 45.26 2.74
154 155 3.967326 TCCAAATCACCGATGATCCTAGT 59.033 43.478 0.00 0.00 45.26 2.57
155 156 4.607293 TCCAAATCACCGATGATCCTAG 57.393 45.455 0.00 0.00 45.26 3.02
156 157 4.592778 TGATCCAAATCACCGATGATCCTA 59.407 41.667 0.00 0.00 45.26 2.94
157 158 3.392285 TGATCCAAATCACCGATGATCCT 59.608 43.478 0.00 0.00 45.26 3.24
158 159 3.743521 TGATCCAAATCACCGATGATCC 58.256 45.455 0.00 0.00 45.26 3.36
167 168 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
168 169 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
169 170 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
170 171 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
171 172 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
172 173 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
173 174 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
174 175 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
175 176 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
176 177 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
177 178 0.037882 AGGAGTCGTACTCGTCGTGA 60.038 55.000 0.56 0.00 45.96 4.35
178 179 0.369589 GAGGAGTCGTACTCGTCGTG 59.630 60.000 16.32 0.00 46.03 4.35
179 180 2.748268 GAGGAGTCGTACTCGTCGT 58.252 57.895 16.32 1.94 46.03 4.34
182 183 1.163554 GGTTGAGGAGTCGTACTCGT 58.836 55.000 9.08 9.08 45.96 4.18
183 184 0.450983 GGGTTGAGGAGTCGTACTCG 59.549 60.000 8.33 0.00 45.96 4.18
184 185 0.816373 GGGGTTGAGGAGTCGTACTC 59.184 60.000 6.50 6.50 44.32 2.59
185 186 0.964358 CGGGGTTGAGGAGTCGTACT 60.964 60.000 0.00 0.00 0.00 2.73
186 187 1.246737 ACGGGGTTGAGGAGTCGTAC 61.247 60.000 0.00 0.00 0.00 3.67
187 188 0.540365 AACGGGGTTGAGGAGTCGTA 60.540 55.000 0.00 0.00 0.00 3.43
188 189 1.813728 GAACGGGGTTGAGGAGTCGT 61.814 60.000 0.00 0.00 0.00 4.34
189 190 1.080025 GAACGGGGTTGAGGAGTCG 60.080 63.158 0.00 0.00 0.00 4.18
190 191 0.246910 GAGAACGGGGTTGAGGAGTC 59.753 60.000 0.00 0.00 0.00 3.36
191 192 0.178929 AGAGAACGGGGTTGAGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
192 193 0.977395 AAGAGAACGGGGTTGAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
193 194 0.685097 CAAGAGAACGGGGTTGAGGA 59.315 55.000 0.00 0.00 0.00 3.71
194 195 0.685097 TCAAGAGAACGGGGTTGAGG 59.315 55.000 0.00 0.00 0.00 3.86
195 196 2.143925 GTTCAAGAGAACGGGGTTGAG 58.856 52.381 0.00 0.00 44.11 3.02
196 197 2.249844 GTTCAAGAGAACGGGGTTGA 57.750 50.000 0.00 0.00 44.11 3.18
205 206 1.002087 GAGGGGAAGCGTTCAAGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
206 207 0.608640 GAGGGGAAGCGTTCAAGAGA 59.391 55.000 0.00 0.00 0.00 3.10
207 208 0.737715 CGAGGGGAAGCGTTCAAGAG 60.738 60.000 0.00 0.00 0.00 2.85
208 209 1.292223 CGAGGGGAAGCGTTCAAGA 59.708 57.895 0.00 0.00 0.00 3.02
209 210 2.391389 GCGAGGGGAAGCGTTCAAG 61.391 63.158 0.00 0.00 0.00 3.02
210 211 2.358247 GCGAGGGGAAGCGTTCAA 60.358 61.111 0.00 0.00 0.00 2.69
216 217 1.007154 GTAGATCGCGAGGGGAAGC 60.007 63.158 16.66 0.00 0.00 3.86
217 218 0.744874 TTGTAGATCGCGAGGGGAAG 59.255 55.000 16.66 0.00 0.00 3.46
218 219 0.744874 CTTGTAGATCGCGAGGGGAA 59.255 55.000 16.66 2.59 0.00 3.97
219 220 1.107538 CCTTGTAGATCGCGAGGGGA 61.108 60.000 16.66 0.00 34.58 4.81
220 221 1.364171 CCTTGTAGATCGCGAGGGG 59.636 63.158 16.66 4.75 34.58 4.79
222 223 1.315690 TACCCTTGTAGATCGCGAGG 58.684 55.000 16.66 10.24 37.28 4.63
223 224 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
224 225 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
225 226 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
231 232 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
232 233 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
233 234 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
234 235 3.389329 AGGAGTGCATCTACATACCCTTG 59.611 47.826 0.00 0.00 0.00 3.61
235 236 3.643792 GAGGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 0.00 3.95
236 237 3.116939 AGAGGAGTGCATCTACATACCCT 60.117 47.826 0.00 0.00 32.55 4.34
237 238 3.235200 AGAGGAGTGCATCTACATACCC 58.765 50.000 0.00 0.00 32.55 3.69
238 239 4.148838 AGAGAGGAGTGCATCTACATACC 58.851 47.826 0.00 0.00 34.88 2.73
239 240 5.070001 AGAGAGAGGAGTGCATCTACATAC 58.930 45.833 0.00 0.00 34.88 2.39
240 241 5.312895 GAGAGAGAGGAGTGCATCTACATA 58.687 45.833 0.00 0.00 34.88 2.29
241 242 4.144297 GAGAGAGAGGAGTGCATCTACAT 58.856 47.826 0.00 0.00 34.88 2.29
242 243 3.550820 GAGAGAGAGGAGTGCATCTACA 58.449 50.000 0.00 0.00 34.88 2.74
243 244 2.548057 CGAGAGAGAGGAGTGCATCTAC 59.452 54.545 0.00 0.00 34.88 2.59
244 245 2.171659 ACGAGAGAGAGGAGTGCATCTA 59.828 50.000 0.00 0.00 34.88 1.98
245 246 1.064758 ACGAGAGAGAGGAGTGCATCT 60.065 52.381 0.00 0.00 37.98 2.90
246 247 1.388547 ACGAGAGAGAGGAGTGCATC 58.611 55.000 0.00 0.00 0.00 3.91
247 248 1.476085 CAACGAGAGAGAGGAGTGCAT 59.524 52.381 0.00 0.00 0.00 3.96
248 249 0.884514 CAACGAGAGAGAGGAGTGCA 59.115 55.000 0.00 0.00 0.00 4.57
249 250 0.457681 GCAACGAGAGAGAGGAGTGC 60.458 60.000 0.00 0.00 0.00 4.40
250 251 1.173043 AGCAACGAGAGAGAGGAGTG 58.827 55.000 0.00 0.00 0.00 3.51
251 252 2.237643 TCTAGCAACGAGAGAGAGGAGT 59.762 50.000 0.00 0.00 0.00 3.85
252 253 2.912771 TCTAGCAACGAGAGAGAGGAG 58.087 52.381 0.00 0.00 0.00 3.69
253 254 3.118223 TCATCTAGCAACGAGAGAGAGGA 60.118 47.826 0.00 0.00 0.00 3.71
254 255 3.210227 TCATCTAGCAACGAGAGAGAGG 58.790 50.000 0.00 0.00 0.00 3.69
255 256 4.335315 AGTTCATCTAGCAACGAGAGAGAG 59.665 45.833 0.00 0.00 0.00 3.20
256 257 4.265893 AGTTCATCTAGCAACGAGAGAGA 58.734 43.478 0.00 0.00 0.00 3.10
257 258 4.630894 AGTTCATCTAGCAACGAGAGAG 57.369 45.455 0.00 0.00 0.00 3.20
258 259 4.459337 TGAAGTTCATCTAGCAACGAGAGA 59.541 41.667 0.08 0.00 0.00 3.10
259 260 4.738124 TGAAGTTCATCTAGCAACGAGAG 58.262 43.478 0.08 0.00 0.00 3.20
260 261 4.783764 TGAAGTTCATCTAGCAACGAGA 57.216 40.909 0.08 0.00 0.00 4.04
261 262 6.499172 TCTATGAAGTTCATCTAGCAACGAG 58.501 40.000 21.49 10.32 38.26 4.18
262 263 6.451064 TCTATGAAGTTCATCTAGCAACGA 57.549 37.500 21.49 0.58 38.26 3.85
263 264 7.436376 TCAATCTATGAAGTTCATCTAGCAACG 59.564 37.037 21.49 5.15 38.26 4.10
264 265 8.654230 TCAATCTATGAAGTTCATCTAGCAAC 57.346 34.615 21.49 0.00 38.26 4.17
265 266 9.486497 GATCAATCTATGAAGTTCATCTAGCAA 57.514 33.333 21.49 2.74 42.54 3.91
266 267 8.868103 AGATCAATCTATGAAGTTCATCTAGCA 58.132 33.333 21.49 3.47 42.54 3.49
267 268 9.709495 AAGATCAATCTATGAAGTTCATCTAGC 57.291 33.333 21.49 5.61 42.54 3.42
269 270 9.993454 CCAAGATCAATCTATGAAGTTCATCTA 57.007 33.333 21.49 11.47 42.54 1.98
270 271 8.492782 ACCAAGATCAATCTATGAAGTTCATCT 58.507 33.333 21.49 8.43 42.54 2.90
271 272 8.557864 CACCAAGATCAATCTATGAAGTTCATC 58.442 37.037 21.49 6.21 42.54 2.92
272 273 8.270030 TCACCAAGATCAATCTATGAAGTTCAT 58.730 33.333 21.57 21.57 42.54 2.57
273 274 7.623630 TCACCAAGATCAATCTATGAAGTTCA 58.376 34.615 8.27 8.27 42.54 3.18
274 275 8.498054 TTCACCAAGATCAATCTATGAAGTTC 57.502 34.615 0.00 0.00 42.54 3.01
275 276 7.066766 GCTTCACCAAGATCAATCTATGAAGTT 59.933 37.037 24.59 1.51 43.94 2.66
276 277 6.541641 GCTTCACCAAGATCAATCTATGAAGT 59.458 38.462 24.59 8.04 43.94 3.01
277 278 6.292757 CGCTTCACCAAGATCAATCTATGAAG 60.293 42.308 22.40 22.40 44.33 3.02
278 279 5.525012 CGCTTCACCAAGATCAATCTATGAA 59.475 40.000 0.00 11.05 42.54 2.57
279 280 5.052481 CGCTTCACCAAGATCAATCTATGA 58.948 41.667 0.00 0.00 43.67 2.15
280 281 4.813161 ACGCTTCACCAAGATCAATCTATG 59.187 41.667 0.00 0.00 35.76 2.23
281 282 5.028549 ACGCTTCACCAAGATCAATCTAT 57.971 39.130 0.00 0.00 35.76 1.98
282 283 4.471904 ACGCTTCACCAAGATCAATCTA 57.528 40.909 0.00 0.00 35.76 1.98
283 284 3.340814 ACGCTTCACCAAGATCAATCT 57.659 42.857 0.00 0.00 39.22 2.40
284 285 4.433615 TCTACGCTTCACCAAGATCAATC 58.566 43.478 0.00 0.00 0.00 2.67
285 286 4.471904 TCTACGCTTCACCAAGATCAAT 57.528 40.909 0.00 0.00 0.00 2.57
286 287 3.953712 TCTACGCTTCACCAAGATCAA 57.046 42.857 0.00 0.00 0.00 2.57
287 288 3.953712 TTCTACGCTTCACCAAGATCA 57.046 42.857 0.00 0.00 0.00 2.92
288 289 5.803020 AAATTCTACGCTTCACCAAGATC 57.197 39.130 0.00 0.00 0.00 2.75
289 290 6.575162 AAAAATTCTACGCTTCACCAAGAT 57.425 33.333 0.00 0.00 0.00 2.40
310 311 6.595682 TGGGGAATGTTGCAGAAAATAAAAA 58.404 32.000 0.00 0.00 0.00 1.94
311 312 6.179906 TGGGGAATGTTGCAGAAAATAAAA 57.820 33.333 0.00 0.00 0.00 1.52
312 313 5.815233 TGGGGAATGTTGCAGAAAATAAA 57.185 34.783 0.00 0.00 0.00 1.40
313 314 5.070981 TGTTGGGGAATGTTGCAGAAAATAA 59.929 36.000 0.00 0.00 0.00 1.40
314 315 4.590647 TGTTGGGGAATGTTGCAGAAAATA 59.409 37.500 0.00 0.00 0.00 1.40
315 316 3.390639 TGTTGGGGAATGTTGCAGAAAAT 59.609 39.130 0.00 0.00 0.00 1.82
316 317 2.768527 TGTTGGGGAATGTTGCAGAAAA 59.231 40.909 0.00 0.00 0.00 2.29
317 318 2.392662 TGTTGGGGAATGTTGCAGAAA 58.607 42.857 0.00 0.00 0.00 2.52
318 319 2.079170 TGTTGGGGAATGTTGCAGAA 57.921 45.000 0.00 0.00 0.00 3.02
319 320 1.686052 GTTGTTGGGGAATGTTGCAGA 59.314 47.619 0.00 0.00 0.00 4.26
320 321 1.688197 AGTTGTTGGGGAATGTTGCAG 59.312 47.619 0.00 0.00 0.00 4.41
321 322 1.786937 AGTTGTTGGGGAATGTTGCA 58.213 45.000 0.00 0.00 0.00 4.08
322 323 2.102252 TCAAGTTGTTGGGGAATGTTGC 59.898 45.455 2.11 0.00 34.09 4.17
323 324 4.039004 TGATCAAGTTGTTGGGGAATGTTG 59.961 41.667 2.11 0.00 34.09 3.33
324 325 4.222336 TGATCAAGTTGTTGGGGAATGTT 58.778 39.130 2.11 0.00 34.09 2.71
325 326 3.843422 TGATCAAGTTGTTGGGGAATGT 58.157 40.909 2.11 0.00 34.09 2.71
326 327 4.708421 AGATGATCAAGTTGTTGGGGAATG 59.292 41.667 0.00 0.00 34.09 2.67
327 328 4.939255 AGATGATCAAGTTGTTGGGGAAT 58.061 39.130 0.00 0.00 34.09 3.01
328 329 4.387026 AGATGATCAAGTTGTTGGGGAA 57.613 40.909 0.00 0.00 34.09 3.97
329 330 4.387026 AAGATGATCAAGTTGTTGGGGA 57.613 40.909 0.00 0.00 34.09 4.81
330 331 4.322198 CCAAAGATGATCAAGTTGTTGGGG 60.322 45.833 0.00 0.00 34.09 4.96
331 332 4.281688 ACCAAAGATGATCAAGTTGTTGGG 59.718 41.667 21.34 11.91 38.85 4.12
332 333 5.009911 TGACCAAAGATGATCAAGTTGTTGG 59.990 40.000 18.20 18.20 40.10 3.77
333 334 5.916883 GTGACCAAAGATGATCAAGTTGTTG 59.083 40.000 0.00 0.51 34.67 3.33
334 335 5.829924 AGTGACCAAAGATGATCAAGTTGTT 59.170 36.000 0.00 0.00 0.00 2.83
335 336 5.240183 CAGTGACCAAAGATGATCAAGTTGT 59.760 40.000 0.00 0.00 0.00 3.32
336 337 5.471116 TCAGTGACCAAAGATGATCAAGTTG 59.529 40.000 0.00 4.51 0.00 3.16
337 338 5.624159 TCAGTGACCAAAGATGATCAAGTT 58.376 37.500 0.00 0.00 0.00 2.66
338 339 5.233083 TCAGTGACCAAAGATGATCAAGT 57.767 39.130 0.00 0.00 0.00 3.16
339 340 5.391736 GCTTCAGTGACCAAAGATGATCAAG 60.392 44.000 0.00 0.00 0.00 3.02
340 341 4.456911 GCTTCAGTGACCAAAGATGATCAA 59.543 41.667 0.00 0.00 0.00 2.57
341 342 4.005650 GCTTCAGTGACCAAAGATGATCA 58.994 43.478 0.00 0.00 0.00 2.92
342 343 3.063180 CGCTTCAGTGACCAAAGATGATC 59.937 47.826 0.00 0.00 0.00 2.92
343 344 3.005554 CGCTTCAGTGACCAAAGATGAT 58.994 45.455 0.00 0.00 0.00 2.45
344 345 2.037121 TCGCTTCAGTGACCAAAGATGA 59.963 45.455 0.00 0.00 0.00 2.92
345 346 2.416747 TCGCTTCAGTGACCAAAGATG 58.583 47.619 0.00 0.00 0.00 2.90
346 347 2.839486 TCGCTTCAGTGACCAAAGAT 57.161 45.000 0.00 0.00 0.00 2.40
347 348 2.839486 ATCGCTTCAGTGACCAAAGA 57.161 45.000 0.00 0.00 37.39 2.52
348 349 3.242543 GCATATCGCTTCAGTGACCAAAG 60.243 47.826 0.00 0.00 37.39 2.77
349 350 2.677836 GCATATCGCTTCAGTGACCAAA 59.322 45.455 0.00 0.00 37.39 3.28
350 351 2.279741 GCATATCGCTTCAGTGACCAA 58.720 47.619 0.00 0.00 37.39 3.67
351 352 1.473257 GGCATATCGCTTCAGTGACCA 60.473 52.381 0.00 0.00 41.91 4.02
352 353 1.221414 GGCATATCGCTTCAGTGACC 58.779 55.000 0.00 0.00 41.91 4.02
353 354 0.855349 CGGCATATCGCTTCAGTGAC 59.145 55.000 0.00 0.00 41.91 3.67
354 355 0.744281 TCGGCATATCGCTTCAGTGA 59.256 50.000 0.00 0.00 41.91 3.41
355 356 1.258982 GTTCGGCATATCGCTTCAGTG 59.741 52.381 0.00 0.00 41.91 3.66
356 357 1.137086 AGTTCGGCATATCGCTTCAGT 59.863 47.619 0.00 0.00 41.91 3.41
357 358 1.789464 GAGTTCGGCATATCGCTTCAG 59.211 52.381 0.00 0.00 41.91 3.02
358 359 1.852942 GAGTTCGGCATATCGCTTCA 58.147 50.000 0.00 0.00 41.91 3.02
359 360 0.778815 CGAGTTCGGCATATCGCTTC 59.221 55.000 0.00 0.00 41.91 3.86
360 361 0.102481 ACGAGTTCGGCATATCGCTT 59.898 50.000 6.48 0.00 44.95 4.68
361 362 0.102481 AACGAGTTCGGCATATCGCT 59.898 50.000 6.48 0.00 44.95 4.93
362 363 0.503117 GAACGAGTTCGGCATATCGC 59.497 55.000 6.48 0.00 44.95 4.58
363 364 1.517276 GTGAACGAGTTCGGCATATCG 59.483 52.381 10.86 0.00 44.95 2.92
364 365 1.517276 CGTGAACGAGTTCGGCATATC 59.483 52.381 10.86 0.00 44.95 1.63
365 366 1.135199 ACGTGAACGAGTTCGGCATAT 60.135 47.619 10.26 0.00 44.95 1.78
366 367 0.241749 ACGTGAACGAGTTCGGCATA 59.758 50.000 10.26 0.00 44.95 3.14
367 368 0.241749 TACGTGAACGAGTTCGGCAT 59.758 50.000 10.26 0.00 44.95 4.40
368 369 0.030504 TTACGTGAACGAGTTCGGCA 59.969 50.000 10.26 1.24 44.95 5.69
369 370 1.343506 ATTACGTGAACGAGTTCGGC 58.656 50.000 10.26 6.03 44.95 5.54
370 371 4.489841 GCTTTATTACGTGAACGAGTTCGG 60.490 45.833 10.26 8.04 44.95 4.30
371 372 4.322804 AGCTTTATTACGTGAACGAGTTCG 59.677 41.667 10.26 0.00 42.28 3.95
372 373 5.758570 AGCTTTATTACGTGAACGAGTTC 57.241 39.130 10.26 8.89 43.02 3.01
373 374 6.237755 GCATAGCTTTATTACGTGAACGAGTT 60.238 38.462 10.26 0.00 43.02 3.01
374 375 5.231568 GCATAGCTTTATTACGTGAACGAGT 59.768 40.000 10.26 0.00 43.02 4.18
375 376 5.459107 AGCATAGCTTTATTACGTGAACGAG 59.541 40.000 10.26 0.00 37.23 4.18
376 377 5.345702 AGCATAGCTTTATTACGTGAACGA 58.654 37.500 10.26 0.00 37.23 3.85
377 378 5.637104 AGCATAGCTTTATTACGTGAACG 57.363 39.130 0.00 0.40 39.97 3.95
569 585 3.754965 ACACAAGCCTTGCTCTTATCAA 58.245 40.909 3.88 0.00 38.25 2.57
575 591 0.886490 CCGAACACAAGCCTTGCTCT 60.886 55.000 3.88 0.00 38.25 4.09
599 615 2.546778 CCATCAAGCCATGCAAATGAC 58.453 47.619 0.00 0.00 0.00 3.06
625 641 0.552363 TGCTACACATGCCATCCCAT 59.448 50.000 0.00 0.00 0.00 4.00
670 687 1.614996 AATGGTTTCCACGTGATGCA 58.385 45.000 19.30 0.00 35.80 3.96
695 712 6.127619 CCACCAGAGCGAGATATATCATACAA 60.128 42.308 15.08 0.00 0.00 2.41
715 732 0.720232 ACTGTCCCCCTATACCACCA 59.280 55.000 0.00 0.00 0.00 4.17
716 733 1.343681 TGACTGTCCCCCTATACCACC 60.344 57.143 5.17 0.00 0.00 4.61
732 764 0.253160 TTGGGAGGGGTAGCATGACT 60.253 55.000 0.00 0.00 0.00 3.41
744 778 7.837187 TCCATTTAAACCTACTAAATTGGGAGG 59.163 37.037 6.03 6.03 28.61 4.30
920 957 2.375509 GGAGGGGTGGATTTATAGTGGG 59.624 54.545 0.00 0.00 0.00 4.61
951 989 2.434336 GGGAAGGAAAGTTGCTGGTTTT 59.566 45.455 0.00 0.00 0.00 2.43
1008 1047 0.036388 CCTTGCGAGCCACCTTCTTA 60.036 55.000 0.00 0.00 0.00 2.10
1047 1087 2.875485 CGTCGGGTCGAGTCATGT 59.125 61.111 0.00 0.00 36.23 3.21
1242 1283 1.526686 CACCTCCTTGCACTGCACA 60.527 57.895 2.26 0.00 38.71 4.57
1479 1520 1.218230 GCGGCGTCTGAGAATGGATC 61.218 60.000 9.37 0.00 0.00 3.36
1502 1543 1.405463 CTGTAGCGACACATGGAGCTA 59.595 52.381 0.00 3.72 40.73 3.32
1521 1562 2.240667 AGAACCAATGTCTATGCTGCCT 59.759 45.455 0.00 0.00 0.00 4.75
1536 1577 0.108520 GATACAACGCGGGAGAACCA 60.109 55.000 12.47 0.00 40.22 3.67
1539 1580 1.140161 CGGATACAACGCGGGAGAA 59.860 57.895 12.47 0.00 0.00 2.87
1727 1779 1.976132 GCATGTAGCTGGCCTCCTGA 61.976 60.000 3.32 0.00 41.15 3.86
1758 1810 6.859017 ACCACCCAAATCAAATAAATACGAC 58.141 36.000 0.00 0.00 0.00 4.34
1772 1825 3.165071 GTCTCATCCAAACCACCCAAAT 58.835 45.455 0.00 0.00 0.00 2.32
1944 2001 6.951643 AGATTTACGACCAACTAAACAACAC 58.048 36.000 0.00 0.00 0.00 3.32
2031 2092 5.946298 TCAGCAATCAAGCAATTGTCTAAG 58.054 37.500 7.40 2.43 38.60 2.18
2064 2125 5.456619 CCCAGCATTAGATCTCCCAATACAA 60.457 44.000 0.00 0.00 0.00 2.41
2068 2129 2.377869 CCCCAGCATTAGATCTCCCAAT 59.622 50.000 0.00 0.00 0.00 3.16
2084 2145 2.767960 AGCATGAAATTAAAGGCCCCAG 59.232 45.455 0.00 0.00 0.00 4.45
2159 2223 0.664761 CCATCACATTTAGCTGGCCG 59.335 55.000 0.00 0.00 0.00 6.13
2219 2283 6.586082 CACCATGTAACTAAATCACAAAAGGC 59.414 38.462 0.00 0.00 0.00 4.35
2230 2294 4.449743 GCGAGTTGTCACCATGTAACTAAA 59.550 41.667 0.00 0.00 33.83 1.85
2234 2298 1.463444 GGCGAGTTGTCACCATGTAAC 59.537 52.381 0.00 0.00 0.00 2.50
2255 2319 5.516339 AGCGCTATTTTTGATATTTGTGTGC 59.484 36.000 8.99 0.00 0.00 4.57
2269 2333 3.941483 ACAATGTAGAGCAGCGCTATTTT 59.059 39.130 10.99 3.78 39.88 1.82
2278 2342 2.168106 AGGAGAGCACAATGTAGAGCAG 59.832 50.000 0.00 0.00 0.00 4.24
2378 2444 3.090037 CTGAAGAAGGAAGGACGGTCTA 58.910 50.000 8.23 0.00 0.00 2.59
2391 4895 1.202806 TGGCTTGTGGGTCTGAAGAAG 60.203 52.381 0.00 0.00 0.00 2.85
2409 4913 1.270252 GCAAATGTTGTCCCCTTGTGG 60.270 52.381 0.00 0.00 0.00 4.17
2410 4914 1.688197 AGCAAATGTTGTCCCCTTGTG 59.312 47.619 0.00 0.00 0.00 3.33
2411 4915 1.963515 GAGCAAATGTTGTCCCCTTGT 59.036 47.619 0.00 0.00 0.00 3.16
2412 4916 1.068333 CGAGCAAATGTTGTCCCCTTG 60.068 52.381 0.00 0.00 0.00 3.61
2413 4917 1.247567 CGAGCAAATGTTGTCCCCTT 58.752 50.000 0.00 0.00 0.00 3.95
2414 4918 0.110486 ACGAGCAAATGTTGTCCCCT 59.890 50.000 0.00 0.00 0.00 4.79
2415 4919 0.521735 GACGAGCAAATGTTGTCCCC 59.478 55.000 0.00 0.00 0.00 4.81
2416 4920 1.234821 TGACGAGCAAATGTTGTCCC 58.765 50.000 0.00 0.00 0.00 4.46
2510 5111 1.360551 CTATGTCAGGCCGACCTCG 59.639 63.158 20.21 7.42 46.34 4.63
2516 5117 0.249238 GAGCTCACTATGTCAGGCCG 60.249 60.000 9.40 0.00 0.00 6.13
2520 5121 2.361757 CCTCTGGAGCTCACTATGTCAG 59.638 54.545 17.19 11.48 0.00 3.51
2527 5128 1.305718 GTCCCCTCTGGAGCTCACT 60.306 63.158 17.19 0.00 46.38 3.41
2552 5153 2.402640 AATAAGACGAGATCGACGCC 57.597 50.000 9.58 4.76 43.02 5.68
2553 5154 4.756868 AAAAATAAGACGAGATCGACGC 57.243 40.909 9.58 7.94 43.02 5.19
2562 5290 9.834628 CACCAAAGCTAAATAAAAATAAGACGA 57.165 29.630 0.00 0.00 0.00 4.20
2627 5356 7.099266 TGAATCCTGGTACATGCATAAAAAG 57.901 36.000 0.00 0.00 38.20 2.27
2629 5358 7.039434 TGTTTGAATCCTGGTACATGCATAAAA 60.039 33.333 0.00 0.00 38.20 1.52
2632 5361 5.356751 GTGTTTGAATCCTGGTACATGCATA 59.643 40.000 0.00 0.00 38.20 3.14
2635 5364 3.505680 TGTGTTTGAATCCTGGTACATGC 59.494 43.478 0.00 0.00 38.20 4.06
2643 5372 4.023193 GGTAGGTTGTGTGTTTGAATCCTG 60.023 45.833 0.00 0.00 0.00 3.86
2644 5373 4.142038 GGTAGGTTGTGTGTTTGAATCCT 58.858 43.478 0.00 0.00 0.00 3.24
2645 5374 3.886505 TGGTAGGTTGTGTGTTTGAATCC 59.113 43.478 0.00 0.00 0.00 3.01
2646 5375 4.578928 ACTGGTAGGTTGTGTGTTTGAATC 59.421 41.667 0.00 0.00 0.00 2.52
2647 5376 4.338118 CACTGGTAGGTTGTGTGTTTGAAT 59.662 41.667 0.00 0.00 0.00 2.57
2648 5377 3.692101 CACTGGTAGGTTGTGTGTTTGAA 59.308 43.478 0.00 0.00 0.00 2.69
2649 5378 3.055021 TCACTGGTAGGTTGTGTGTTTGA 60.055 43.478 0.00 0.00 33.82 2.69
2650 5379 3.275143 TCACTGGTAGGTTGTGTGTTTG 58.725 45.455 0.00 0.00 33.82 2.93
2651 5380 3.541632 CTCACTGGTAGGTTGTGTGTTT 58.458 45.455 0.00 0.00 33.82 2.83
2652 5381 2.158813 CCTCACTGGTAGGTTGTGTGTT 60.159 50.000 0.00 0.00 33.82 3.32
2653 5382 1.416401 CCTCACTGGTAGGTTGTGTGT 59.584 52.381 0.00 0.00 33.82 3.72
2654 5383 1.691976 TCCTCACTGGTAGGTTGTGTG 59.308 52.381 0.00 0.00 35.48 3.82
2655 5384 1.692519 GTCCTCACTGGTAGGTTGTGT 59.307 52.381 0.00 0.00 35.48 3.72
2656 5385 1.971357 AGTCCTCACTGGTAGGTTGTG 59.029 52.381 0.00 0.00 35.48 3.33
2657 5386 2.400467 AGTCCTCACTGGTAGGTTGT 57.600 50.000 0.00 0.00 35.48 3.32
2658 5387 3.697045 CTCTAGTCCTCACTGGTAGGTTG 59.303 52.174 0.00 0.00 35.48 3.77
2659 5388 3.878527 GCTCTAGTCCTCACTGGTAGGTT 60.879 52.174 0.00 0.00 35.48 3.50
2660 5389 2.357361 GCTCTAGTCCTCACTGGTAGGT 60.357 54.545 0.00 0.00 35.48 3.08
2661 5390 2.303175 GCTCTAGTCCTCACTGGTAGG 58.697 57.143 0.00 0.00 37.07 3.18
2662 5391 2.948979 CTGCTCTAGTCCTCACTGGTAG 59.051 54.545 0.00 0.00 37.07 3.18
2663 5392 2.357257 CCTGCTCTAGTCCTCACTGGTA 60.357 54.545 0.00 0.00 37.07 3.25
2664 5393 1.618345 CCTGCTCTAGTCCTCACTGGT 60.618 57.143 0.00 0.00 37.07 4.00
2665 5394 1.110442 CCTGCTCTAGTCCTCACTGG 58.890 60.000 0.00 0.00 33.62 4.00
2666 5395 0.459489 GCCTGCTCTAGTCCTCACTG 59.541 60.000 0.00 0.00 33.62 3.66
2667 5396 0.334676 AGCCTGCTCTAGTCCTCACT 59.665 55.000 0.00 0.00 36.55 3.41
2668 5397 1.953686 CTAGCCTGCTCTAGTCCTCAC 59.046 57.143 0.00 0.00 33.19 3.51
2669 5398 1.752436 GCTAGCCTGCTCTAGTCCTCA 60.752 57.143 2.29 0.00 38.58 3.86
2670 5399 0.958822 GCTAGCCTGCTCTAGTCCTC 59.041 60.000 2.29 0.00 38.58 3.71
2671 5400 0.469144 GGCTAGCCTGCTCTAGTCCT 60.469 60.000 27.17 0.00 38.58 3.85
2672 5401 0.757188 TGGCTAGCCTGCTCTAGTCC 60.757 60.000 33.07 3.78 39.80 3.85
2673 5402 0.673437 CTGGCTAGCCTGCTCTAGTC 59.327 60.000 33.07 4.32 40.67 2.59
2674 5403 0.032615 ACTGGCTAGCCTGCTCTAGT 60.033 55.000 33.56 24.34 38.58 2.57
2675 5404 1.118838 AACTGGCTAGCCTGCTCTAG 58.881 55.000 33.56 23.73 39.17 2.43
2676 5405 1.208052 CAAACTGGCTAGCCTGCTCTA 59.792 52.381 33.56 14.07 38.41 2.43
2677 5406 0.035630 CAAACTGGCTAGCCTGCTCT 60.036 55.000 33.56 19.26 38.41 4.09
2678 5407 1.652167 GCAAACTGGCTAGCCTGCTC 61.652 60.000 33.56 19.10 38.41 4.26
2679 5408 1.676967 GCAAACTGGCTAGCCTGCT 60.677 57.895 33.56 23.06 38.41 4.24
2680 5409 2.704808 GGCAAACTGGCTAGCCTGC 61.705 63.158 33.56 31.06 43.70 4.85
2681 5410 3.595819 GGCAAACTGGCTAGCCTG 58.404 61.111 32.42 32.42 43.70 4.85
2684 5413 1.178534 TTGGTGGCAAACTGGCTAGC 61.179 55.000 6.04 6.04 44.10 3.42
2685 5414 1.203052 CATTGGTGGCAAACTGGCTAG 59.797 52.381 0.00 0.00 44.10 3.42
2686 5415 1.255882 CATTGGTGGCAAACTGGCTA 58.744 50.000 0.00 0.00 44.10 3.93
2687 5416 0.760189 ACATTGGTGGCAAACTGGCT 60.760 50.000 0.00 0.00 44.10 4.75
2688 5417 0.600782 CACATTGGTGGCAAACTGGC 60.601 55.000 0.00 0.00 44.03 4.85
2689 5418 0.600782 GCACATTGGTGGCAAACTGG 60.601 55.000 0.00 0.00 45.38 4.00
2690 5419 0.390124 AGCACATTGGTGGCAAACTG 59.610 50.000 0.00 0.00 45.38 3.16
2691 5420 1.122227 AAGCACATTGGTGGCAAACT 58.878 45.000 0.00 0.00 45.38 2.66
2692 5421 1.598601 CAAAGCACATTGGTGGCAAAC 59.401 47.619 0.00 0.00 45.38 2.93
2693 5422 1.209019 ACAAAGCACATTGGTGGCAAA 59.791 42.857 0.00 0.00 45.38 3.68
2694 5423 0.829333 ACAAAGCACATTGGTGGCAA 59.171 45.000 0.00 0.00 45.38 4.52
2695 5424 1.697284 TACAAAGCACATTGGTGGCA 58.303 45.000 0.00 0.00 45.38 4.92
2696 5425 3.443681 ACTATACAAAGCACATTGGTGGC 59.556 43.478 0.00 0.00 45.38 5.01
2697 5426 6.318648 ACATACTATACAAAGCACATTGGTGG 59.681 38.462 0.00 0.00 45.38 4.61
2699 5428 7.109501 TGACATACTATACAAAGCACATTGGT 58.890 34.615 0.00 0.00 34.56 3.67
2700 5429 7.552458 TGACATACTATACAAAGCACATTGG 57.448 36.000 0.00 0.00 34.56 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.