Multiple sequence alignment - TraesCS7B01G482300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G482300 chr7B 100.000 5285 0 0 1 5285 740042421 740037137 0.000000e+00 9760
1 TraesCS7B01G482300 chr7D 92.193 4432 181 70 176 4532 635579161 635583502 0.000000e+00 6115
2 TraesCS7B01G482300 chr7D 91.554 663 26 11 4646 5282 635584105 635584763 0.000000e+00 887
3 TraesCS7B01G482300 chr7A 95.355 3617 121 23 852 4460 730434390 730430813 0.000000e+00 5705
4 TraesCS7B01G482300 chr7A 94.307 808 21 10 4501 5285 730430817 730430012 0.000000e+00 1214
5 TraesCS7B01G482300 chr7A 79.499 439 22 15 295 697 730434861 730434455 3.160000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G482300 chr7B 740037137 740042421 5284 True 9760.000000 9760 100.000000 1 5285 1 chr7B.!!$R1 5284
1 TraesCS7B01G482300 chr7D 635579161 635584763 5602 False 3501.000000 6115 91.873500 176 5282 2 chr7D.!!$F1 5106
2 TraesCS7B01G482300 chr7A 730430012 730434861 4849 True 2389.666667 5705 89.720333 295 5285 3 chr7A.!!$R1 4990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.035630 CCAAGCTCAGGAAGGACAGG 60.036 60.0 0.00 0.00 0.00 4.00 F
990 1092 0.107165 CAAGGAAAGGGGATCCGTCC 60.107 60.0 5.45 9.73 42.03 4.79 F
1360 1462 0.320771 CCAGAAGTTCCACCACGAGG 60.321 60.0 0.00 0.00 42.21 4.63 F
2337 2439 0.036010 CAGAAGACTGCCCCATTCGT 60.036 55.0 0.00 0.00 37.33 3.85 F
3279 3381 0.248843 AGGGCGCAGAGAAAGAAGAG 59.751 55.0 10.83 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1791 0.447801 CGCAGATGGGGAAGTTTTCG 59.552 55.0 0.0 0.0 0.00 3.46 R
2057 2159 0.537188 TTGGACCTCCTCTGAATCGC 59.463 55.0 0.0 0.0 36.82 4.58 R
2746 2848 0.668706 CTCAGGTCCAAGACACGCAG 60.669 60.0 0.0 0.0 33.68 5.18 R
3363 3465 0.392461 TCTCAACGCTATTGGGTGGC 60.392 55.0 0.0 0.0 39.38 5.01 R
4496 4602 0.329261 CCTCAGGCCTCATCAAACCA 59.671 55.0 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.439305 TTTAGATGTTGCTGTCCATTGC 57.561 40.909 0.00 0.00 0.00 3.56
22 23 2.211250 AGATGTTGCTGTCCATTGCT 57.789 45.000 0.00 0.00 0.00 3.91
23 24 1.816835 AGATGTTGCTGTCCATTGCTG 59.183 47.619 0.00 0.00 0.00 4.41
24 25 1.542915 GATGTTGCTGTCCATTGCTGT 59.457 47.619 0.00 0.00 0.00 4.40
25 26 1.401761 TGTTGCTGTCCATTGCTGTT 58.598 45.000 0.00 0.00 0.00 3.16
26 27 2.580962 TGTTGCTGTCCATTGCTGTTA 58.419 42.857 0.00 0.00 0.00 2.41
27 28 2.553602 TGTTGCTGTCCATTGCTGTTAG 59.446 45.455 0.00 0.00 0.00 2.34
28 29 1.167851 TGCTGTCCATTGCTGTTAGC 58.832 50.000 0.00 0.00 42.82 3.09
29 30 1.271543 TGCTGTCCATTGCTGTTAGCT 60.272 47.619 2.24 0.00 42.97 3.32
30 31 1.131883 GCTGTCCATTGCTGTTAGCTG 59.868 52.381 0.00 0.00 42.97 4.24
31 32 2.703416 CTGTCCATTGCTGTTAGCTGA 58.297 47.619 0.00 0.00 42.97 4.26
32 33 3.276857 CTGTCCATTGCTGTTAGCTGAT 58.723 45.455 0.00 0.00 42.97 2.90
33 34 3.273434 TGTCCATTGCTGTTAGCTGATC 58.727 45.455 0.00 0.00 42.97 2.92
34 35 3.273434 GTCCATTGCTGTTAGCTGATCA 58.727 45.455 0.00 0.00 42.97 2.92
35 36 3.064545 GTCCATTGCTGTTAGCTGATCAC 59.935 47.826 0.00 0.00 42.97 3.06
36 37 3.011818 CCATTGCTGTTAGCTGATCACA 58.988 45.455 0.00 0.00 42.97 3.58
37 38 3.441222 CCATTGCTGTTAGCTGATCACAA 59.559 43.478 0.00 0.00 42.97 3.33
38 39 4.082625 CCATTGCTGTTAGCTGATCACAAA 60.083 41.667 0.00 0.00 42.97 2.83
39 40 5.463286 CATTGCTGTTAGCTGATCACAAAA 58.537 37.500 0.00 0.00 42.97 2.44
40 41 5.710513 TTGCTGTTAGCTGATCACAAAAT 57.289 34.783 0.00 0.00 42.97 1.82
41 42 6.816134 TTGCTGTTAGCTGATCACAAAATA 57.184 33.333 0.00 0.00 42.97 1.40
42 43 6.426980 TGCTGTTAGCTGATCACAAAATAG 57.573 37.500 0.00 0.00 42.97 1.73
43 44 5.163723 TGCTGTTAGCTGATCACAAAATAGC 60.164 40.000 15.37 15.37 42.97 2.97
44 45 5.731686 GCTGTTAGCTGATCACAAAATAGCC 60.732 44.000 12.94 1.95 38.45 3.93
45 46 5.500234 TGTTAGCTGATCACAAAATAGCCT 58.500 37.500 0.00 0.00 35.05 4.58
46 47 5.355071 TGTTAGCTGATCACAAAATAGCCTG 59.645 40.000 0.00 0.00 35.05 4.85
47 48 3.285484 AGCTGATCACAAAATAGCCTGG 58.715 45.455 0.00 0.00 35.05 4.45
48 49 2.223665 GCTGATCACAAAATAGCCTGGC 60.224 50.000 11.65 11.65 0.00 4.85
49 50 2.360165 CTGATCACAAAATAGCCTGGCC 59.640 50.000 16.57 0.00 0.00 5.36
50 51 2.291475 TGATCACAAAATAGCCTGGCCA 60.291 45.455 16.57 4.71 0.00 5.36
51 52 2.300956 TCACAAAATAGCCTGGCCAA 57.699 45.000 16.57 4.13 0.00 4.52
52 53 2.818921 TCACAAAATAGCCTGGCCAAT 58.181 42.857 16.57 6.69 0.00 3.16
53 54 3.172339 TCACAAAATAGCCTGGCCAATT 58.828 40.909 16.57 12.84 0.00 2.32
54 55 3.195396 TCACAAAATAGCCTGGCCAATTC 59.805 43.478 16.57 0.00 0.00 2.17
55 56 3.196254 CACAAAATAGCCTGGCCAATTCT 59.804 43.478 16.57 6.60 0.00 2.40
56 57 3.196254 ACAAAATAGCCTGGCCAATTCTG 59.804 43.478 16.57 14.55 0.00 3.02
57 58 1.406903 AATAGCCTGGCCAATTCTGC 58.593 50.000 16.57 4.76 0.00 4.26
58 59 0.554792 ATAGCCTGGCCAATTCTGCT 59.445 50.000 16.57 12.35 0.00 4.24
59 60 0.107017 TAGCCTGGCCAATTCTGCTC 60.107 55.000 16.57 0.00 0.00 4.26
60 61 1.379576 GCCTGGCCAATTCTGCTCT 60.380 57.895 7.01 0.00 0.00 4.09
61 62 1.664321 GCCTGGCCAATTCTGCTCTG 61.664 60.000 7.01 0.00 0.00 3.35
62 63 0.323178 CCTGGCCAATTCTGCTCTGT 60.323 55.000 7.01 0.00 0.00 3.41
63 64 1.542492 CTGGCCAATTCTGCTCTGTT 58.458 50.000 7.01 0.00 0.00 3.16
64 65 1.471684 CTGGCCAATTCTGCTCTGTTC 59.528 52.381 7.01 0.00 0.00 3.18
65 66 1.074405 TGGCCAATTCTGCTCTGTTCT 59.926 47.619 0.61 0.00 0.00 3.01
66 67 1.742268 GGCCAATTCTGCTCTGTTCTC 59.258 52.381 0.00 0.00 0.00 2.87
67 68 1.742268 GCCAATTCTGCTCTGTTCTCC 59.258 52.381 0.00 0.00 0.00 3.71
68 69 2.363683 CCAATTCTGCTCTGTTCTCCC 58.636 52.381 0.00 0.00 0.00 4.30
69 70 2.363683 CAATTCTGCTCTGTTCTCCCC 58.636 52.381 0.00 0.00 0.00 4.81
70 71 1.963985 ATTCTGCTCTGTTCTCCCCT 58.036 50.000 0.00 0.00 0.00 4.79
71 72 1.270907 TTCTGCTCTGTTCTCCCCTC 58.729 55.000 0.00 0.00 0.00 4.30
72 73 0.411452 TCTGCTCTGTTCTCCCCTCT 59.589 55.000 0.00 0.00 0.00 3.69
73 74 1.203237 TCTGCTCTGTTCTCCCCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
74 75 1.206849 CTGCTCTGTTCTCCCCTCTTC 59.793 57.143 0.00 0.00 0.00 2.87
75 76 0.174617 GCTCTGTTCTCCCCTCTTCG 59.825 60.000 0.00 0.00 0.00 3.79
76 77 0.174617 CTCTGTTCTCCCCTCTTCGC 59.825 60.000 0.00 0.00 0.00 4.70
77 78 1.219393 CTGTTCTCCCCTCTTCGCC 59.781 63.158 0.00 0.00 0.00 5.54
78 79 2.245438 CTGTTCTCCCCTCTTCGCCC 62.245 65.000 0.00 0.00 0.00 6.13
79 80 1.990614 GTTCTCCCCTCTTCGCCCT 60.991 63.158 0.00 0.00 0.00 5.19
80 81 1.686110 TTCTCCCCTCTTCGCCCTC 60.686 63.158 0.00 0.00 0.00 4.30
81 82 2.042435 CTCCCCTCTTCGCCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
82 83 2.364317 TCCCCTCTTCGCCCTCTG 60.364 66.667 0.00 0.00 0.00 3.35
83 84 4.168291 CCCCTCTTCGCCCTCTGC 62.168 72.222 0.00 0.00 0.00 4.26
84 85 4.168291 CCCTCTTCGCCCTCTGCC 62.168 72.222 0.00 0.00 36.24 4.85
85 86 4.168291 CCTCTTCGCCCTCTGCCC 62.168 72.222 0.00 0.00 36.24 5.36
86 87 4.168291 CTCTTCGCCCTCTGCCCC 62.168 72.222 0.00 0.00 36.24 5.80
87 88 4.722535 TCTTCGCCCTCTGCCCCT 62.723 66.667 0.00 0.00 36.24 4.79
88 89 4.168291 CTTCGCCCTCTGCCCCTC 62.168 72.222 0.00 0.00 36.24 4.30
92 93 4.416738 GCCCTCTGCCCCTCACAC 62.417 72.222 0.00 0.00 0.00 3.82
93 94 2.608988 CCCTCTGCCCCTCACACT 60.609 66.667 0.00 0.00 0.00 3.55
94 95 2.664081 CCCTCTGCCCCTCACACTC 61.664 68.421 0.00 0.00 0.00 3.51
95 96 2.664081 CCTCTGCCCCTCACACTCC 61.664 68.421 0.00 0.00 0.00 3.85
96 97 1.611851 CTCTGCCCCTCACACTCCT 60.612 63.158 0.00 0.00 0.00 3.69
97 98 1.610673 TCTGCCCCTCACACTCCTC 60.611 63.158 0.00 0.00 0.00 3.71
98 99 1.611851 CTGCCCCTCACACTCCTCT 60.612 63.158 0.00 0.00 0.00 3.69
99 100 0.324738 CTGCCCCTCACACTCCTCTA 60.325 60.000 0.00 0.00 0.00 2.43
100 101 0.324738 TGCCCCTCACACTCCTCTAG 60.325 60.000 0.00 0.00 0.00 2.43
101 102 0.324830 GCCCCTCACACTCCTCTAGT 60.325 60.000 0.00 0.00 39.81 2.57
102 103 1.063867 GCCCCTCACACTCCTCTAGTA 60.064 57.143 0.00 0.00 35.76 1.82
103 104 2.425102 GCCCCTCACACTCCTCTAGTAT 60.425 54.545 0.00 0.00 35.76 2.12
104 105 3.226777 CCCCTCACACTCCTCTAGTATG 58.773 54.545 0.00 0.00 35.76 2.39
105 106 2.625790 CCCTCACACTCCTCTAGTATGC 59.374 54.545 0.00 0.00 35.76 3.14
106 107 3.291584 CCTCACACTCCTCTAGTATGCA 58.708 50.000 0.00 0.00 35.76 3.96
107 108 3.701542 CCTCACACTCCTCTAGTATGCAA 59.298 47.826 0.00 0.00 35.76 4.08
108 109 4.440802 CCTCACACTCCTCTAGTATGCAAC 60.441 50.000 0.00 0.00 35.76 4.17
109 110 3.447586 TCACACTCCTCTAGTATGCAACC 59.552 47.826 0.00 0.00 35.76 3.77
110 111 3.195610 CACACTCCTCTAGTATGCAACCA 59.804 47.826 0.00 0.00 35.76 3.67
111 112 3.838317 ACACTCCTCTAGTATGCAACCAA 59.162 43.478 0.00 0.00 35.76 3.67
112 113 4.471386 ACACTCCTCTAGTATGCAACCAAT 59.529 41.667 0.00 0.00 35.76 3.16
113 114 4.813161 CACTCCTCTAGTATGCAACCAATG 59.187 45.833 0.00 0.00 35.76 2.82
114 115 4.684485 ACTCCTCTAGTATGCAACCAATGC 60.684 45.833 0.00 0.00 46.13 3.56
115 116 7.662526 ACTCCTCTAGTATGCAACCAATGCC 62.663 48.000 0.00 0.00 45.67 4.40
122 123 2.604079 CAACCAATGCCCCTGCCA 60.604 61.111 0.00 0.00 36.33 4.92
123 124 2.203750 AACCAATGCCCCTGCCAA 59.796 55.556 0.00 0.00 36.33 4.52
124 125 1.914764 AACCAATGCCCCTGCCAAG 60.915 57.895 0.00 0.00 36.33 3.61
125 126 3.777910 CCAATGCCCCTGCCAAGC 61.778 66.667 0.00 0.00 36.33 4.01
126 127 2.682494 CAATGCCCCTGCCAAGCT 60.682 61.111 0.00 0.00 36.33 3.74
127 128 2.363406 AATGCCCCTGCCAAGCTC 60.363 61.111 0.00 0.00 36.33 4.09
128 129 3.228243 AATGCCCCTGCCAAGCTCA 62.228 57.895 0.00 0.00 36.33 4.26
129 130 3.657038 ATGCCCCTGCCAAGCTCAG 62.657 63.158 0.00 0.00 36.33 3.35
134 135 4.315588 CTGCCAAGCTCAGGAAGG 57.684 61.111 9.23 0.00 0.00 3.46
135 136 1.681666 CTGCCAAGCTCAGGAAGGA 59.318 57.895 9.23 0.00 0.00 3.36
136 137 0.676151 CTGCCAAGCTCAGGAAGGAC 60.676 60.000 9.23 0.00 0.00 3.85
137 138 1.376466 GCCAAGCTCAGGAAGGACA 59.624 57.895 9.23 0.00 0.00 4.02
138 139 0.676151 GCCAAGCTCAGGAAGGACAG 60.676 60.000 9.23 0.00 0.00 3.51
139 140 0.035630 CCAAGCTCAGGAAGGACAGG 60.036 60.000 0.00 0.00 0.00 4.00
140 141 0.979665 CAAGCTCAGGAAGGACAGGA 59.020 55.000 0.00 0.00 0.00 3.86
141 142 1.066286 CAAGCTCAGGAAGGACAGGAG 60.066 57.143 0.00 0.00 0.00 3.69
142 143 0.411452 AGCTCAGGAAGGACAGGAGA 59.589 55.000 0.00 0.00 0.00 3.71
143 144 0.823460 GCTCAGGAAGGACAGGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
144 145 0.823460 CTCAGGAAGGACAGGAGAGC 59.177 60.000 0.00 0.00 0.00 4.09
145 146 0.616111 TCAGGAAGGACAGGAGAGCC 60.616 60.000 0.00 0.00 0.00 4.70
147 148 0.325203 AGGAAGGACAGGAGAGCCTC 60.325 60.000 0.00 0.00 44.80 4.70
155 156 4.328208 GGAGAGCCTCCCATCCAT 57.672 61.111 9.46 0.00 44.36 3.41
156 157 1.759881 GGAGAGCCTCCCATCCATG 59.240 63.158 9.46 0.00 44.36 3.66
157 158 1.776975 GGAGAGCCTCCCATCCATGG 61.777 65.000 4.97 4.97 44.36 3.66
158 159 2.114838 GAGCCTCCCATCCATGGC 59.885 66.667 6.96 0.00 46.70 4.40
159 160 3.504204 GAGCCTCCCATCCATGGCC 62.504 68.421 6.96 0.00 46.70 5.36
160 161 4.610526 GCCTCCCATCCATGGCCC 62.611 72.222 6.96 0.00 46.70 5.80
161 162 2.780040 CCTCCCATCCATGGCCCT 60.780 66.667 6.96 0.00 46.70 5.19
162 163 2.838467 CCTCCCATCCATGGCCCTC 61.838 68.421 6.96 0.00 46.70 4.30
163 164 2.044280 TCCCATCCATGGCCCTCA 59.956 61.111 6.96 0.00 46.70 3.86
164 165 1.387781 TCCCATCCATGGCCCTCAT 60.388 57.895 6.96 0.00 46.70 2.90
171 172 3.010144 ATGGCCCTCATGGTGTCC 58.990 61.111 0.00 0.00 34.22 4.02
172 173 1.930133 ATGGCCCTCATGGTGTCCA 60.930 57.895 0.00 0.00 38.19 4.02
173 174 2.044946 GGCCCTCATGGTGTCCAC 60.045 66.667 0.00 0.00 35.80 4.02
188 189 2.297701 GTCCACCTTTGACAAGAGCAA 58.702 47.619 0.00 0.00 32.91 3.91
202 203 2.442830 GCAATCTTCCAGGGGCCC 60.443 66.667 17.12 17.12 0.00 5.80
237 238 3.214328 GGAGATGTGACAGGTTGTTTGT 58.786 45.455 0.00 0.00 0.00 2.83
242 243 1.358759 GACAGGTTGTTTGTGCCCG 59.641 57.895 0.00 0.00 0.00 6.13
280 281 2.702847 GACTGTTGTCACCCACCAC 58.297 57.895 0.00 0.00 42.48 4.16
281 282 0.818040 GACTGTTGTCACCCACCACC 60.818 60.000 0.00 0.00 42.48 4.61
289 290 0.764890 TCACCCACCACCAGAAGAAG 59.235 55.000 0.00 0.00 0.00 2.85
290 291 0.764890 CACCCACCACCAGAAGAAGA 59.235 55.000 0.00 0.00 0.00 2.87
291 292 1.142870 CACCCACCACCAGAAGAAGAA 59.857 52.381 0.00 0.00 0.00 2.52
292 293 1.421646 ACCCACCACCAGAAGAAGAAG 59.578 52.381 0.00 0.00 0.00 2.85
293 294 1.699634 CCCACCACCAGAAGAAGAAGA 59.300 52.381 0.00 0.00 0.00 2.87
316 317 6.261826 AGAAGAAGAAGAATGGAGTTTGTGTG 59.738 38.462 0.00 0.00 0.00 3.82
343 344 2.216898 GATCGGAGGATTTTGAGCTGG 58.783 52.381 0.00 0.00 31.51 4.85
344 345 0.984230 TCGGAGGATTTTGAGCTGGT 59.016 50.000 0.00 0.00 0.00 4.00
345 346 1.089920 CGGAGGATTTTGAGCTGGTG 58.910 55.000 0.00 0.00 0.00 4.17
346 347 1.339055 CGGAGGATTTTGAGCTGGTGA 60.339 52.381 0.00 0.00 0.00 4.02
348 349 2.026822 GGAGGATTTTGAGCTGGTGAGA 60.027 50.000 0.00 0.00 0.00 3.27
349 350 3.269178 GAGGATTTTGAGCTGGTGAGAG 58.731 50.000 0.00 0.00 0.00 3.20
350 351 2.909006 AGGATTTTGAGCTGGTGAGAGA 59.091 45.455 0.00 0.00 0.00 3.10
351 352 3.055240 AGGATTTTGAGCTGGTGAGAGAG 60.055 47.826 0.00 0.00 0.00 3.20
352 353 2.847327 TTTTGAGCTGGTGAGAGAGG 57.153 50.000 0.00 0.00 0.00 3.69
353 354 0.979665 TTTGAGCTGGTGAGAGAGGG 59.020 55.000 0.00 0.00 0.00 4.30
354 355 0.115152 TTGAGCTGGTGAGAGAGGGA 59.885 55.000 0.00 0.00 0.00 4.20
383 384 2.185663 ATTAGGGGGAGGAAAGCGTA 57.814 50.000 0.00 0.00 0.00 4.42
437 438 2.694760 CGCTCCCTCTTTTGGCTGC 61.695 63.158 0.00 0.00 0.00 5.25
438 439 2.346541 GCTCCCTCTTTTGGCTGCC 61.347 63.158 12.87 12.87 0.00 4.85
441 442 0.540365 TCCCTCTTTTGGCTGCCTTG 60.540 55.000 21.03 7.29 0.00 3.61
442 443 1.538687 CCCTCTTTTGGCTGCCTTGG 61.539 60.000 21.03 11.74 0.00 3.61
443 444 1.538687 CCTCTTTTGGCTGCCTTGGG 61.539 60.000 21.03 9.37 0.00 4.12
444 445 0.829182 CTCTTTTGGCTGCCTTGGGT 60.829 55.000 21.03 0.00 0.00 4.51
445 446 0.398381 TCTTTTGGCTGCCTTGGGTT 60.398 50.000 21.03 0.00 0.00 4.11
446 447 0.249996 CTTTTGGCTGCCTTGGGTTG 60.250 55.000 21.03 0.03 0.00 3.77
447 448 1.694133 TTTTGGCTGCCTTGGGTTGG 61.694 55.000 21.03 0.00 0.00 3.77
448 449 4.619320 TGGCTGCCTTGGGTTGGG 62.619 66.667 21.03 0.00 0.00 4.12
449 450 4.621087 GGCTGCCTTGGGTTGGGT 62.621 66.667 12.43 0.00 0.00 4.51
450 451 2.524148 GCTGCCTTGGGTTGGGTT 60.524 61.111 0.00 0.00 0.00 4.11
451 452 2.871253 GCTGCCTTGGGTTGGGTTG 61.871 63.158 0.00 0.00 0.00 3.77
452 453 2.123077 TGCCTTGGGTTGGGTTGG 60.123 61.111 0.00 0.00 0.00 3.77
453 454 2.922503 GCCTTGGGTTGGGTTGGG 60.923 66.667 0.00 0.00 0.00 4.12
494 495 4.360405 GGGTGGTGGCCGTCCATT 62.360 66.667 19.97 0.00 45.62 3.16
495 496 2.750237 GGTGGTGGCCGTCCATTC 60.750 66.667 19.97 12.83 45.62 2.67
496 497 2.351276 GTGGTGGCCGTCCATTCT 59.649 61.111 19.97 0.00 45.62 2.40
497 498 2.040544 GTGGTGGCCGTCCATTCTG 61.041 63.158 19.97 0.00 45.62 3.02
498 499 3.134127 GGTGGCCGTCCATTCTGC 61.134 66.667 11.30 0.00 45.62 4.26
545 547 2.602676 CCCCGCCTTCCTCTTCCAA 61.603 63.158 0.00 0.00 0.00 3.53
546 548 1.609783 CCCGCCTTCCTCTTCCAAT 59.390 57.895 0.00 0.00 0.00 3.16
547 549 0.837272 CCCGCCTTCCTCTTCCAATA 59.163 55.000 0.00 0.00 0.00 1.90
554 586 4.748239 GCCTTCCTCTTCCAATAATCCTCC 60.748 50.000 0.00 0.00 0.00 4.30
555 587 4.202514 CCTTCCTCTTCCAATAATCCTCCC 60.203 50.000 0.00 0.00 0.00 4.30
585 617 7.500227 TCTTCATCAACAGGTAATCATCAATCC 59.500 37.037 0.00 0.00 0.00 3.01
589 621 6.064060 TCAACAGGTAATCATCAATCCATCC 58.936 40.000 0.00 0.00 0.00 3.51
604 656 2.974794 TCCATCCATCCATCAATCGAGT 59.025 45.455 0.00 0.00 0.00 4.18
632 684 6.249260 CAGTTTGCGAGTTATTTATTGTGCTC 59.751 38.462 0.00 0.00 0.00 4.26
633 685 4.875544 TGCGAGTTATTTATTGTGCTCC 57.124 40.909 0.00 0.00 0.00 4.70
641 693 3.410631 TTTATTGTGCTCCGTTCCAGA 57.589 42.857 0.00 0.00 0.00 3.86
643 695 2.496899 ATTGTGCTCCGTTCCAGATT 57.503 45.000 0.00 0.00 0.00 2.40
652 704 3.107601 TCCGTTCCAGATTCTCAAGGAT 58.892 45.455 0.00 0.00 0.00 3.24
672 724 1.745653 TGCGCTCCCGATCTGATATAG 59.254 52.381 9.73 0.00 36.29 1.31
702 771 5.381757 TGGATTTTCTTCTTTCCTTTCCGA 58.618 37.500 0.00 0.00 0.00 4.55
704 773 7.172342 TGGATTTTCTTCTTTCCTTTCCGATA 58.828 34.615 0.00 0.00 0.00 2.92
712 781 8.856103 TCTTCTTTCCTTTCCGATAATTTGTTT 58.144 29.630 0.00 0.00 0.00 2.83
718 787 5.963586 CCTTTCCGATAATTTGTTTCGTAGC 59.036 40.000 0.00 0.00 0.00 3.58
732 801 5.705441 TGTTTCGTAGCAATTGAAGAGGATT 59.295 36.000 10.34 0.00 0.00 3.01
734 803 6.817765 TTCGTAGCAATTGAAGAGGATTTT 57.182 33.333 10.34 0.00 0.00 1.82
735 804 6.182039 TCGTAGCAATTGAAGAGGATTTTG 57.818 37.500 10.34 0.00 0.00 2.44
736 805 5.123820 TCGTAGCAATTGAAGAGGATTTTGG 59.876 40.000 10.34 0.00 0.00 3.28
737 806 4.198028 AGCAATTGAAGAGGATTTTGGC 57.802 40.909 10.34 0.00 0.00 4.52
757 826 3.059597 GGCGTGTCCAGATGATAATTTCG 60.060 47.826 0.00 0.00 34.01 3.46
780 849 1.808411 TCCTGTGTCGGCTTGATTTC 58.192 50.000 0.00 0.00 0.00 2.17
851 934 6.409524 TCTGTTGCAAATGGAAAGAATCTT 57.590 33.333 0.00 0.00 0.00 2.40
860 943 7.094933 GCAAATGGAAAGAATCTTTGCAAATCT 60.095 33.333 28.49 13.28 46.69 2.40
864 947 9.813446 ATGGAAAGAATCTTTGCAAATCTAATC 57.187 29.630 28.49 13.39 33.62 1.75
866 949 9.643693 GGAAAGAATCTTTGCAAATCTAATCAA 57.356 29.630 19.97 0.00 0.00 2.57
872 955 9.538508 AATCTTTGCAAATCTAATCAATTAGCC 57.461 29.630 13.23 0.00 39.60 3.93
873 956 7.491682 TCTTTGCAAATCTAATCAATTAGCCC 58.508 34.615 13.23 0.00 39.60 5.19
921 1018 0.941542 TTATTATTCCCGCGTGCTGC 59.058 50.000 4.92 0.00 41.47 5.25
938 1035 2.125552 CGCTGACGCAGATTCCCA 60.126 61.111 10.46 0.00 32.44 4.37
942 1039 1.474077 GCTGACGCAGATTCCCATTTT 59.526 47.619 10.46 0.00 32.44 1.82
943 1040 2.478539 GCTGACGCAGATTCCCATTTTC 60.479 50.000 10.46 0.00 32.44 2.29
944 1041 1.737236 TGACGCAGATTCCCATTTTCG 59.263 47.619 0.00 0.00 0.00 3.46
945 1042 1.737793 GACGCAGATTCCCATTTTCGT 59.262 47.619 0.00 0.00 0.00 3.85
946 1043 1.737793 ACGCAGATTCCCATTTTCGTC 59.262 47.619 0.00 0.00 0.00 4.20
947 1044 1.267532 CGCAGATTCCCATTTTCGTCG 60.268 52.381 0.00 0.00 0.00 5.12
949 1046 2.161609 GCAGATTCCCATTTTCGTCGTT 59.838 45.455 0.00 0.00 0.00 3.85
951 1048 2.161609 AGATTCCCATTTTCGTCGTTGC 59.838 45.455 0.00 0.00 0.00 4.17
952 1049 1.600023 TTCCCATTTTCGTCGTTGCT 58.400 45.000 0.00 0.00 0.00 3.91
954 1051 0.109781 CCCATTTTCGTCGTTGCTGG 60.110 55.000 0.00 0.00 0.00 4.85
955 1052 0.591170 CCATTTTCGTCGTTGCTGGT 59.409 50.000 0.00 0.00 0.00 4.00
964 1066 0.380378 TCGTTGCTGGTTGTTGAAGC 59.620 50.000 0.00 0.00 37.46 3.86
975 1077 1.208614 GTTGAAGCTCTGCGCAAGG 59.791 57.895 13.05 8.32 42.61 3.61
978 1080 0.534877 TGAAGCTCTGCGCAAGGAAA 60.535 50.000 13.05 0.00 42.61 3.13
982 1084 2.034066 TCTGCGCAAGGAAAGGGG 59.966 61.111 13.05 0.00 37.09 4.79
983 1085 2.034066 CTGCGCAAGGAAAGGGGA 59.966 61.111 13.05 0.00 37.09 4.81
984 1086 1.379044 CTGCGCAAGGAAAGGGGAT 60.379 57.895 13.05 0.00 37.09 3.85
986 1088 2.121538 GCGCAAGGAAAGGGGATCC 61.122 63.158 1.92 1.92 37.22 3.36
987 1089 1.819632 CGCAAGGAAAGGGGATCCG 60.820 63.158 5.45 0.00 42.03 4.18
988 1090 1.303282 GCAAGGAAAGGGGATCCGT 59.697 57.895 5.45 0.00 42.03 4.69
989 1091 0.748367 GCAAGGAAAGGGGATCCGTC 60.748 60.000 5.45 0.16 42.03 4.79
990 1092 0.107165 CAAGGAAAGGGGATCCGTCC 60.107 60.000 5.45 9.73 42.03 4.79
1057 1159 3.764466 CGGCGCTGGAGGAGTTCT 61.764 66.667 8.83 0.00 0.00 3.01
1360 1462 0.320771 CCAGAAGTTCCACCACGAGG 60.321 60.000 0.00 0.00 42.21 4.63
1484 1586 0.394899 GCCAGGAGGGATTGGTTCAG 60.395 60.000 0.00 0.00 40.01 3.02
1488 1590 1.034292 GGAGGGATTGGTTCAGCAGC 61.034 60.000 0.00 0.00 0.00 5.25
1563 1665 1.668151 GCAGGTCCACAAGTCCGTC 60.668 63.158 0.00 0.00 0.00 4.79
1689 1791 1.403814 TCACCGATGAGAGGATGACC 58.596 55.000 0.00 0.00 0.00 4.02
1802 1904 0.326264 GCTGGGGACACAGAGAACAT 59.674 55.000 5.61 0.00 40.97 2.71
2010 2112 1.131826 CCGCGTCGACAAAATGGAC 59.868 57.895 17.16 0.00 32.91 4.02
2151 2253 0.379669 CAATCAAGGTCATCGCAGGC 59.620 55.000 0.00 0.00 0.00 4.85
2286 2388 3.405831 TGTTGATCTGCCTTCTGAACTG 58.594 45.455 0.00 0.00 0.00 3.16
2337 2439 0.036010 CAGAAGACTGCCCCATTCGT 60.036 55.000 0.00 0.00 37.33 3.85
2364 2466 2.635229 ATCTCGTGCGGCACTGGATC 62.635 60.000 28.42 3.76 31.34 3.36
2391 2493 0.957888 GCCTTGTCAAGCCCAGAGAC 60.958 60.000 7.09 0.00 0.00 3.36
2502 2604 2.612672 GTGCTGGATGACACATGATCTG 59.387 50.000 0.00 0.00 36.77 2.90
2565 2667 2.961526 TAATTGACGGTCAGGAGAGC 57.038 50.000 11.14 0.00 38.87 4.09
2604 2706 0.318441 CCTCACTGTCAAAGCCTCGA 59.682 55.000 0.00 0.00 0.00 4.04
2688 2790 2.303311 GAGCCTAAGGTCACTGTTCCTT 59.697 50.000 15.26 15.26 44.81 3.36
2742 2844 0.603569 TTCTTCTCGAGTCAGCCACC 59.396 55.000 13.13 0.00 0.00 4.61
2746 2848 3.655810 CTCGAGTCAGCCACCTGCC 62.656 68.421 3.62 0.00 42.71 4.85
2784 2886 1.065126 AGCAACACAGGAATAGAGGCC 60.065 52.381 0.00 0.00 0.00 5.19
2806 2908 2.696759 CCAAAATCCGTCGGCACCC 61.697 63.158 6.34 0.00 0.00 4.61
2845 2947 1.550524 TCAATCTTGACGGGACTCAGG 59.449 52.381 0.00 0.00 31.01 3.86
2873 2975 2.335092 CTACCCTCCTCCGTCGGCTA 62.335 65.000 6.34 0.00 0.00 3.93
3015 3117 2.227194 GTACCAAAAGGTGTGGGTGAG 58.773 52.381 0.00 0.00 40.75 3.51
3097 3199 2.485814 GGCTGTGACTTGATTCACCTTC 59.514 50.000 0.98 0.00 44.63 3.46
3168 3270 1.419387 ACTTCTGGAGCTTCTGCACTT 59.581 47.619 0.00 0.00 42.74 3.16
3239 3341 7.284944 AGCATTAATTGAGGAAGAAGAGAATGG 59.715 37.037 0.00 0.00 0.00 3.16
3279 3381 0.248843 AGGGCGCAGAGAAAGAAGAG 59.751 55.000 10.83 0.00 0.00 2.85
3321 3423 6.749923 AAAAATGCTCAGTGGATTAGAGAC 57.250 37.500 0.00 0.00 35.62 3.36
3363 3465 5.525012 TGAAAAGATATGGAATGAGCTCACG 59.475 40.000 20.97 0.00 0.00 4.35
3585 3687 0.389817 TTGTCGCCATCGGTTCTGAG 60.390 55.000 0.00 0.00 36.13 3.35
3904 4006 1.651770 TGAGGATCTCCAACCTACCCT 59.348 52.381 0.00 0.00 38.89 4.34
3986 4088 0.392595 CTGCAGCATCTCAGGCTTGA 60.393 55.000 0.00 0.00 40.23 3.02
4031 4133 4.189639 ACTATTTCGAGGAGTTGGTCAC 57.810 45.455 0.00 0.00 0.00 3.67
4307 4412 7.530426 AAAAATCTTGGTATGCTGTCTTCTT 57.470 32.000 0.00 0.00 0.00 2.52
4308 4413 7.530426 AAAATCTTGGTATGCTGTCTTCTTT 57.470 32.000 0.00 0.00 0.00 2.52
4309 4414 7.530426 AAATCTTGGTATGCTGTCTTCTTTT 57.470 32.000 0.00 0.00 0.00 2.27
4335 4440 5.739161 CACTTTTCAGTACTTGTGAAGTTGC 59.261 40.000 0.00 0.00 42.81 4.17
4496 4602 5.766222 AGTCGTCGTGTTGTTACTAGAAAT 58.234 37.500 0.00 0.00 0.00 2.17
4623 4729 6.092670 CACCAATACTCGATGTGTGATTCTTT 59.907 38.462 0.00 0.00 0.00 2.52
4800 5395 5.365133 CAAACTTATGTGCGCAAATTTCAC 58.635 37.500 20.15 0.94 0.00 3.18
4952 5549 7.226720 TCGAGTTTTTGAAATAAAGAGCTCAGT 59.773 33.333 17.77 5.38 0.00 3.41
4957 5554 9.683069 TTTTTGAAATAAAGAGCTCAGTTCATC 57.317 29.630 17.77 7.94 0.00 2.92
5249 5874 4.414337 AGCCATGAGGAATCTTACAGTC 57.586 45.455 0.00 0.00 36.89 3.51
5250 5875 3.135530 AGCCATGAGGAATCTTACAGTCC 59.864 47.826 0.00 0.00 36.89 3.85
5258 5883 3.817647 GGAATCTTACAGTCCCATGATGC 59.182 47.826 0.00 0.00 0.00 3.91
5282 5907 1.372128 CGCCTTTCTTGCCTTGTGC 60.372 57.895 0.00 0.00 41.77 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.816835 CAGCAATGGACAGCAACATCT 59.183 47.619 0.00 0.00 0.00 2.90
4 5 1.542915 ACAGCAATGGACAGCAACATC 59.457 47.619 0.00 0.00 0.00 3.06
6 7 1.401761 AACAGCAATGGACAGCAACA 58.598 45.000 0.00 0.00 0.00 3.33
7 8 2.669391 GCTAACAGCAATGGACAGCAAC 60.669 50.000 0.00 0.00 41.89 4.17
8 9 1.541147 GCTAACAGCAATGGACAGCAA 59.459 47.619 0.00 0.00 41.89 3.91
9 10 1.167851 GCTAACAGCAATGGACAGCA 58.832 50.000 0.00 0.00 41.89 4.41
10 11 1.131883 CAGCTAACAGCAATGGACAGC 59.868 52.381 0.38 0.00 45.56 4.40
11 12 2.703416 TCAGCTAACAGCAATGGACAG 58.297 47.619 0.38 0.00 45.56 3.51
12 13 2.857186 TCAGCTAACAGCAATGGACA 57.143 45.000 0.38 0.00 45.56 4.02
13 14 3.064545 GTGATCAGCTAACAGCAATGGAC 59.935 47.826 0.00 0.00 45.56 4.02
14 15 3.273434 GTGATCAGCTAACAGCAATGGA 58.727 45.455 0.00 0.00 45.56 3.41
15 16 3.011818 TGTGATCAGCTAACAGCAATGG 58.988 45.455 0.00 0.00 45.56 3.16
16 17 4.690184 TTGTGATCAGCTAACAGCAATG 57.310 40.909 0.00 0.00 45.56 2.82
17 18 5.710513 TTTTGTGATCAGCTAACAGCAAT 57.289 34.783 0.00 0.00 45.56 3.56
18 19 5.710513 ATTTTGTGATCAGCTAACAGCAA 57.289 34.783 0.00 0.00 45.56 3.91
19 20 5.163723 GCTATTTTGTGATCAGCTAACAGCA 60.164 40.000 0.00 0.00 45.56 4.41
20 21 5.269313 GCTATTTTGTGATCAGCTAACAGC 58.731 41.667 0.00 0.00 42.84 4.40
21 22 5.587844 AGGCTATTTTGTGATCAGCTAACAG 59.412 40.000 0.00 0.00 32.78 3.16
22 23 5.355071 CAGGCTATTTTGTGATCAGCTAACA 59.645 40.000 0.00 0.00 32.78 2.41
23 24 5.220931 CCAGGCTATTTTGTGATCAGCTAAC 60.221 44.000 0.00 0.00 32.78 2.34
24 25 4.883585 CCAGGCTATTTTGTGATCAGCTAA 59.116 41.667 0.00 0.00 32.78 3.09
25 26 4.454678 CCAGGCTATTTTGTGATCAGCTA 58.545 43.478 0.00 0.00 32.78 3.32
26 27 3.285484 CCAGGCTATTTTGTGATCAGCT 58.715 45.455 0.00 0.00 32.78 4.24
27 28 2.223665 GCCAGGCTATTTTGTGATCAGC 60.224 50.000 3.29 0.00 0.00 4.26
28 29 2.360165 GGCCAGGCTATTTTGTGATCAG 59.640 50.000 12.43 0.00 0.00 2.90
29 30 2.291475 TGGCCAGGCTATTTTGTGATCA 60.291 45.455 12.43 0.00 0.00 2.92
30 31 2.378038 TGGCCAGGCTATTTTGTGATC 58.622 47.619 12.43 0.00 0.00 2.92
31 32 2.530460 TGGCCAGGCTATTTTGTGAT 57.470 45.000 12.43 0.00 0.00 3.06
32 33 2.300956 TTGGCCAGGCTATTTTGTGA 57.699 45.000 12.43 0.00 0.00 3.58
33 34 3.196254 AGAATTGGCCAGGCTATTTTGTG 59.804 43.478 12.43 0.00 0.00 3.33
34 35 3.196254 CAGAATTGGCCAGGCTATTTTGT 59.804 43.478 12.43 0.00 0.00 2.83
35 36 3.788937 CAGAATTGGCCAGGCTATTTTG 58.211 45.455 12.43 12.57 0.00 2.44
36 37 2.169144 GCAGAATTGGCCAGGCTATTTT 59.831 45.455 12.43 2.01 0.00 1.82
37 38 1.758862 GCAGAATTGGCCAGGCTATTT 59.241 47.619 12.43 8.13 0.00 1.40
38 39 1.063417 AGCAGAATTGGCCAGGCTATT 60.063 47.619 12.43 11.50 0.00 1.73
39 40 0.554792 AGCAGAATTGGCCAGGCTAT 59.445 50.000 12.43 2.32 0.00 2.97
40 41 0.107017 GAGCAGAATTGGCCAGGCTA 60.107 55.000 12.43 0.81 0.00 3.93
41 42 1.379576 GAGCAGAATTGGCCAGGCT 60.380 57.895 12.43 11.51 0.00 4.58
42 43 1.379576 AGAGCAGAATTGGCCAGGC 60.380 57.895 5.11 1.26 0.00 4.85
43 44 0.323178 ACAGAGCAGAATTGGCCAGG 60.323 55.000 5.11 0.00 0.00 4.45
44 45 1.471684 GAACAGAGCAGAATTGGCCAG 59.528 52.381 5.11 0.00 0.00 4.85
45 46 1.074405 AGAACAGAGCAGAATTGGCCA 59.926 47.619 0.00 0.00 0.00 5.36
46 47 1.742268 GAGAACAGAGCAGAATTGGCC 59.258 52.381 0.00 0.00 0.00 5.36
47 48 1.742268 GGAGAACAGAGCAGAATTGGC 59.258 52.381 0.00 0.00 0.00 4.52
48 49 2.363683 GGGAGAACAGAGCAGAATTGG 58.636 52.381 0.00 0.00 0.00 3.16
49 50 2.026449 AGGGGAGAACAGAGCAGAATTG 60.026 50.000 0.00 0.00 0.00 2.32
50 51 2.238395 GAGGGGAGAACAGAGCAGAATT 59.762 50.000 0.00 0.00 0.00 2.17
51 52 1.836802 GAGGGGAGAACAGAGCAGAAT 59.163 52.381 0.00 0.00 0.00 2.40
52 53 1.203237 AGAGGGGAGAACAGAGCAGAA 60.203 52.381 0.00 0.00 0.00 3.02
53 54 0.411452 AGAGGGGAGAACAGAGCAGA 59.589 55.000 0.00 0.00 0.00 4.26
54 55 1.206849 GAAGAGGGGAGAACAGAGCAG 59.793 57.143 0.00 0.00 0.00 4.24
55 56 1.270907 GAAGAGGGGAGAACAGAGCA 58.729 55.000 0.00 0.00 0.00 4.26
56 57 0.174617 CGAAGAGGGGAGAACAGAGC 59.825 60.000 0.00 0.00 0.00 4.09
57 58 0.174617 GCGAAGAGGGGAGAACAGAG 59.825 60.000 0.00 0.00 0.00 3.35
58 59 1.258445 GGCGAAGAGGGGAGAACAGA 61.258 60.000 0.00 0.00 0.00 3.41
59 60 1.219393 GGCGAAGAGGGGAGAACAG 59.781 63.158 0.00 0.00 0.00 3.16
60 61 2.291043 GGGCGAAGAGGGGAGAACA 61.291 63.158 0.00 0.00 0.00 3.18
61 62 1.962321 GAGGGCGAAGAGGGGAGAAC 61.962 65.000 0.00 0.00 0.00 3.01
62 63 1.686110 GAGGGCGAAGAGGGGAGAA 60.686 63.158 0.00 0.00 0.00 2.87
63 64 2.042843 GAGGGCGAAGAGGGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
64 65 2.042435 AGAGGGCGAAGAGGGGAG 60.042 66.667 0.00 0.00 0.00 4.30
65 66 2.364317 CAGAGGGCGAAGAGGGGA 60.364 66.667 0.00 0.00 0.00 4.81
66 67 4.168291 GCAGAGGGCGAAGAGGGG 62.168 72.222 0.00 0.00 0.00 4.79
67 68 4.168291 GGCAGAGGGCGAAGAGGG 62.168 72.222 0.00 0.00 46.16 4.30
68 69 4.168291 GGGCAGAGGGCGAAGAGG 62.168 72.222 0.00 0.00 46.16 3.69
69 70 4.168291 GGGGCAGAGGGCGAAGAG 62.168 72.222 0.00 0.00 46.16 2.85
70 71 4.722535 AGGGGCAGAGGGCGAAGA 62.723 66.667 0.00 0.00 46.16 2.87
71 72 4.168291 GAGGGGCAGAGGGCGAAG 62.168 72.222 0.00 0.00 46.16 3.79
75 76 4.416738 GTGTGAGGGGCAGAGGGC 62.417 72.222 0.00 0.00 43.74 5.19
76 77 2.608988 AGTGTGAGGGGCAGAGGG 60.609 66.667 0.00 0.00 0.00 4.30
77 78 2.664081 GGAGTGTGAGGGGCAGAGG 61.664 68.421 0.00 0.00 0.00 3.69
78 79 1.611851 AGGAGTGTGAGGGGCAGAG 60.612 63.158 0.00 0.00 0.00 3.35
79 80 1.610673 GAGGAGTGTGAGGGGCAGA 60.611 63.158 0.00 0.00 0.00 4.26
80 81 0.324738 TAGAGGAGTGTGAGGGGCAG 60.325 60.000 0.00 0.00 0.00 4.85
81 82 0.324738 CTAGAGGAGTGTGAGGGGCA 60.325 60.000 0.00 0.00 0.00 5.36
82 83 0.324830 ACTAGAGGAGTGTGAGGGGC 60.325 60.000 0.00 0.00 36.87 5.80
83 84 3.603965 ATACTAGAGGAGTGTGAGGGG 57.396 52.381 0.00 0.00 39.39 4.79
89 90 3.441101 TGGTTGCATACTAGAGGAGTGT 58.559 45.455 0.00 0.00 39.39 3.55
90 91 4.471904 TTGGTTGCATACTAGAGGAGTG 57.528 45.455 0.00 0.00 39.39 3.51
91 92 5.028549 CATTGGTTGCATACTAGAGGAGT 57.971 43.478 0.00 0.00 42.69 3.85
105 106 2.175035 CTTGGCAGGGGCATTGGTTG 62.175 60.000 0.00 0.00 43.71 3.77
106 107 1.914764 CTTGGCAGGGGCATTGGTT 60.915 57.895 0.00 0.00 43.71 3.67
107 108 2.284112 CTTGGCAGGGGCATTGGT 60.284 61.111 0.00 0.00 43.71 3.67
108 109 3.777910 GCTTGGCAGGGGCATTGG 61.778 66.667 0.00 0.00 43.71 3.16
109 110 2.682494 AGCTTGGCAGGGGCATTG 60.682 61.111 0.00 0.00 43.71 2.82
110 111 2.363406 GAGCTTGGCAGGGGCATT 60.363 61.111 0.00 0.00 43.71 3.56
111 112 3.657038 CTGAGCTTGGCAGGGGCAT 62.657 63.158 0.00 0.00 43.71 4.40
112 113 4.355720 CTGAGCTTGGCAGGGGCA 62.356 66.667 0.00 0.00 43.71 5.36
117 118 0.676151 GTCCTTCCTGAGCTTGGCAG 60.676 60.000 0.00 0.00 0.00 4.85
118 119 1.376466 GTCCTTCCTGAGCTTGGCA 59.624 57.895 0.00 0.00 0.00 4.92
119 120 0.676151 CTGTCCTTCCTGAGCTTGGC 60.676 60.000 0.00 0.00 0.00 4.52
120 121 0.035630 CCTGTCCTTCCTGAGCTTGG 60.036 60.000 0.00 0.00 0.00 3.61
121 122 0.979665 TCCTGTCCTTCCTGAGCTTG 59.020 55.000 0.00 0.00 0.00 4.01
122 123 1.203237 TCTCCTGTCCTTCCTGAGCTT 60.203 52.381 0.00 0.00 0.00 3.74
123 124 0.411452 TCTCCTGTCCTTCCTGAGCT 59.589 55.000 0.00 0.00 0.00 4.09
124 125 0.823460 CTCTCCTGTCCTTCCTGAGC 59.177 60.000 0.00 0.00 0.00 4.26
125 126 0.823460 GCTCTCCTGTCCTTCCTGAG 59.177 60.000 0.00 0.00 0.00 3.35
126 127 0.616111 GGCTCTCCTGTCCTTCCTGA 60.616 60.000 0.00 0.00 0.00 3.86
127 128 0.617249 AGGCTCTCCTGTCCTTCCTG 60.617 60.000 0.00 0.00 42.34 3.86
128 129 0.325203 GAGGCTCTCCTGTCCTTCCT 60.325 60.000 7.40 0.00 44.46 3.36
129 130 1.334384 GGAGGCTCTCCTGTCCTTCC 61.334 65.000 15.23 0.00 46.41 3.46
130 131 2.207580 GGAGGCTCTCCTGTCCTTC 58.792 63.158 15.23 0.00 46.41 3.46
131 132 4.470764 GGAGGCTCTCCTGTCCTT 57.529 61.111 15.23 0.00 46.41 3.36
139 140 1.759881 CCATGGATGGGAGGCTCTC 59.240 63.158 15.23 11.70 44.31 3.20
140 141 3.998797 CCATGGATGGGAGGCTCT 58.001 61.111 15.23 0.00 44.31 4.09
154 155 1.930133 TGGACACCATGAGGGCCAT 60.930 57.895 6.18 0.00 42.05 4.40
155 156 2.531428 TGGACACCATGAGGGCCA 60.531 61.111 6.18 7.03 42.05 5.36
156 157 2.044946 GTGGACACCATGAGGGCC 60.045 66.667 0.00 0.00 42.05 5.80
166 167 1.604278 GCTCTTGTCAAAGGTGGACAC 59.396 52.381 0.00 0.00 44.38 3.67
167 168 1.211703 TGCTCTTGTCAAAGGTGGACA 59.788 47.619 0.00 0.00 43.12 4.02
168 169 1.967319 TGCTCTTGTCAAAGGTGGAC 58.033 50.000 0.00 0.00 33.90 4.02
169 170 2.727123 TTGCTCTTGTCAAAGGTGGA 57.273 45.000 0.00 0.00 33.90 4.02
170 171 3.152341 AGATTGCTCTTGTCAAAGGTGG 58.848 45.455 0.00 0.00 33.90 4.61
171 172 4.320788 GGAAGATTGCTCTTGTCAAAGGTG 60.321 45.833 0.00 0.00 41.87 4.00
172 173 3.823304 GGAAGATTGCTCTTGTCAAAGGT 59.177 43.478 0.00 0.00 41.87 3.50
173 174 3.822735 TGGAAGATTGCTCTTGTCAAAGG 59.177 43.478 0.00 0.00 41.87 3.11
174 175 4.082895 CCTGGAAGATTGCTCTTGTCAAAG 60.083 45.833 0.00 0.00 41.87 2.77
175 176 3.822735 CCTGGAAGATTGCTCTTGTCAAA 59.177 43.478 0.00 0.00 41.87 2.69
176 177 3.415212 CCTGGAAGATTGCTCTTGTCAA 58.585 45.455 0.00 0.00 41.87 3.18
177 178 2.290514 CCCTGGAAGATTGCTCTTGTCA 60.291 50.000 0.00 0.00 41.87 3.58
178 179 2.363683 CCCTGGAAGATTGCTCTTGTC 58.636 52.381 0.00 0.00 41.87 3.18
179 180 1.005215 CCCCTGGAAGATTGCTCTTGT 59.995 52.381 0.00 0.00 41.87 3.16
180 181 1.760192 CCCCTGGAAGATTGCTCTTG 58.240 55.000 0.00 0.00 41.87 3.02
181 182 0.033699 GCCCCTGGAAGATTGCTCTT 60.034 55.000 0.00 0.00 44.53 2.85
182 183 1.611965 GCCCCTGGAAGATTGCTCT 59.388 57.895 0.00 0.00 34.07 4.09
183 184 1.454663 GGCCCCTGGAAGATTGCTC 60.455 63.158 0.00 0.00 34.07 4.26
202 203 1.617850 CATCTCCCATTCTCTCCTCCG 59.382 57.143 0.00 0.00 0.00 4.63
214 215 1.434188 ACAACCTGTCACATCTCCCA 58.566 50.000 0.00 0.00 0.00 4.37
252 253 0.663153 GACAACAGTCAACAGGGCAC 59.337 55.000 0.00 0.00 32.50 5.01
255 256 1.308998 GGTGACAACAGTCAACAGGG 58.691 55.000 8.66 0.00 46.72 4.45
259 260 1.021968 GGTGGGTGACAACAGTCAAC 58.978 55.000 5.13 5.13 46.76 3.18
260 261 0.621082 TGGTGGGTGACAACAGTCAA 59.379 50.000 0.00 0.00 43.22 3.18
261 262 2.302019 TGGTGGGTGACAACAGTCA 58.698 52.632 0.00 0.00 43.22 3.41
280 281 7.119553 CCATTCTTCTTCTTCTTCTTCTTCTGG 59.880 40.741 0.00 0.00 0.00 3.86
281 282 7.877097 TCCATTCTTCTTCTTCTTCTTCTTCTG 59.123 37.037 0.00 0.00 0.00 3.02
289 290 7.012799 ACACAAACTCCATTCTTCTTCTTCTTC 59.987 37.037 0.00 0.00 0.00 2.87
290 291 6.830838 ACACAAACTCCATTCTTCTTCTTCTT 59.169 34.615 0.00 0.00 0.00 2.52
291 292 6.261826 CACACAAACTCCATTCTTCTTCTTCT 59.738 38.462 0.00 0.00 0.00 2.85
292 293 6.038714 ACACACAAACTCCATTCTTCTTCTTC 59.961 38.462 0.00 0.00 0.00 2.87
293 294 5.888161 ACACACAAACTCCATTCTTCTTCTT 59.112 36.000 0.00 0.00 0.00 2.52
316 317 2.939103 CAAAATCCTCCGATCCAGACAC 59.061 50.000 0.00 0.00 0.00 3.67
343 344 0.333312 TCTCCACCTCCCTCTCTCAC 59.667 60.000 0.00 0.00 0.00 3.51
344 345 1.084866 TTCTCCACCTCCCTCTCTCA 58.915 55.000 0.00 0.00 0.00 3.27
345 346 2.239681 TTTCTCCACCTCCCTCTCTC 57.760 55.000 0.00 0.00 0.00 3.20
346 347 2.959421 ATTTCTCCACCTCCCTCTCT 57.041 50.000 0.00 0.00 0.00 3.10
348 349 3.388913 CCTAATTTCTCCACCTCCCTCT 58.611 50.000 0.00 0.00 0.00 3.69
349 350 2.439880 CCCTAATTTCTCCACCTCCCTC 59.560 54.545 0.00 0.00 0.00 4.30
350 351 2.493091 CCCTAATTTCTCCACCTCCCT 58.507 52.381 0.00 0.00 0.00 4.20
351 352 1.495148 CCCCTAATTTCTCCACCTCCC 59.505 57.143 0.00 0.00 0.00 4.30
352 353 1.495148 CCCCCTAATTTCTCCACCTCC 59.505 57.143 0.00 0.00 0.00 4.30
353 354 2.439880 CTCCCCCTAATTTCTCCACCTC 59.560 54.545 0.00 0.00 0.00 3.85
354 355 2.493091 CTCCCCCTAATTTCTCCACCT 58.507 52.381 0.00 0.00 0.00 4.00
383 384 4.361971 TCCCTCTCCCACGACGCT 62.362 66.667 0.00 0.00 0.00 5.07
385 386 3.812019 CGTCCCTCTCCCACGACG 61.812 72.222 0.00 0.00 41.70 5.12
387 388 2.905935 GATCCGTCCCTCTCCCACGA 62.906 65.000 0.00 0.00 35.49 4.35
388 389 2.442272 ATCCGTCCCTCTCCCACG 60.442 66.667 0.00 0.00 0.00 4.94
389 390 2.134933 GGATCCGTCCCTCTCCCAC 61.135 68.421 0.00 0.00 38.69 4.61
390 391 1.961381 ATGGATCCGTCCCTCTCCCA 61.961 60.000 7.39 0.00 44.41 4.37
391 392 0.764752 AATGGATCCGTCCCTCTCCC 60.765 60.000 7.01 0.00 44.41 4.30
392 393 1.132500 AAATGGATCCGTCCCTCTCC 58.868 55.000 7.01 0.00 44.41 3.71
393 394 3.231818 TCTAAATGGATCCGTCCCTCTC 58.768 50.000 7.01 0.00 44.41 3.20
394 395 3.235200 CTCTAAATGGATCCGTCCCTCT 58.765 50.000 7.01 0.00 44.41 3.69
395 396 2.300437 CCTCTAAATGGATCCGTCCCTC 59.700 54.545 7.01 0.00 44.41 4.30
437 438 1.074850 AACCCAACCCAACCCAAGG 60.075 57.895 0.00 0.00 0.00 3.61
438 439 1.406860 CCAACCCAACCCAACCCAAG 61.407 60.000 0.00 0.00 0.00 3.61
441 442 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
442 443 0.691413 TTTCCCAACCCAACCCAACC 60.691 55.000 0.00 0.00 0.00 3.77
443 444 0.756294 CTTTCCCAACCCAACCCAAC 59.244 55.000 0.00 0.00 0.00 3.77
444 445 1.051556 GCTTTCCCAACCCAACCCAA 61.052 55.000 0.00 0.00 0.00 4.12
445 446 1.458588 GCTTTCCCAACCCAACCCA 60.459 57.895 0.00 0.00 0.00 4.51
446 447 1.458588 TGCTTTCCCAACCCAACCC 60.459 57.895 0.00 0.00 0.00 4.11
447 448 1.471829 CCTGCTTTCCCAACCCAACC 61.472 60.000 0.00 0.00 0.00 3.77
448 449 1.471829 CCCTGCTTTCCCAACCCAAC 61.472 60.000 0.00 0.00 0.00 3.77
449 450 1.152355 CCCTGCTTTCCCAACCCAA 60.152 57.895 0.00 0.00 0.00 4.12
450 451 2.080336 CTCCCTGCTTTCCCAACCCA 62.080 60.000 0.00 0.00 0.00 4.51
451 452 1.304464 CTCCCTGCTTTCCCAACCC 60.304 63.158 0.00 0.00 0.00 4.11
452 453 1.304464 CCTCCCTGCTTTCCCAACC 60.304 63.158 0.00 0.00 0.00 3.77
453 454 1.304464 CCCTCCCTGCTTTCCCAAC 60.304 63.158 0.00 0.00 0.00 3.77
488 489 2.048603 GGCCACCAGCAGAATGGAC 61.049 63.158 0.00 0.00 46.50 4.02
490 491 3.136123 CGGCCACCAGCAGAATGG 61.136 66.667 2.24 0.00 46.50 3.16
491 492 2.360350 ACGGCCACCAGCAGAATG 60.360 61.111 2.24 0.00 46.50 2.67
493 494 4.680237 CGACGGCCACCAGCAGAA 62.680 66.667 2.24 0.00 46.50 3.02
524 526 2.689034 AAGAGGAAGGCGGGGAGG 60.689 66.667 0.00 0.00 0.00 4.30
545 547 6.126097 TGTTGATGAAGATTGGGGAGGATTAT 60.126 38.462 0.00 0.00 0.00 1.28
546 548 5.193527 TGTTGATGAAGATTGGGGAGGATTA 59.806 40.000 0.00 0.00 0.00 1.75
547 549 4.017222 TGTTGATGAAGATTGGGGAGGATT 60.017 41.667 0.00 0.00 0.00 3.01
554 586 5.887598 TGATTACCTGTTGATGAAGATTGGG 59.112 40.000 0.00 0.00 0.00 4.12
555 587 7.283807 TGATGATTACCTGTTGATGAAGATTGG 59.716 37.037 0.00 0.00 0.00 3.16
585 617 3.931468 GCTACTCGATTGATGGATGGATG 59.069 47.826 0.00 0.00 0.00 3.51
589 621 3.987547 ACTGCTACTCGATTGATGGATG 58.012 45.455 0.00 0.00 0.00 3.51
604 656 7.240674 CACAATAAATAACTCGCAAACTGCTA 58.759 34.615 0.00 0.00 42.25 3.49
615 667 5.353123 TGGAACGGAGCACAATAAATAACTC 59.647 40.000 0.00 0.00 0.00 3.01
632 684 3.201290 CATCCTTGAGAATCTGGAACGG 58.799 50.000 0.00 0.00 40.52 4.44
633 685 2.611292 GCATCCTTGAGAATCTGGAACG 59.389 50.000 0.00 0.00 40.52 3.95
641 693 3.393472 GGAGCGCATCCTTGAGAAT 57.607 52.632 11.47 0.00 45.64 2.40
652 704 1.745653 CTATATCAGATCGGGAGCGCA 59.254 52.381 11.47 0.00 0.00 6.09
672 724 8.800370 AAGGAAAGAAGAAAATCCATCTACTC 57.200 34.615 0.00 0.00 34.30 2.59
687 739 9.129209 GAAACAAATTATCGGAAAGGAAAGAAG 57.871 33.333 0.00 0.00 0.00 2.85
702 771 9.559958 CTCTTCAATTGCTACGAAACAAATTAT 57.440 29.630 0.00 0.00 0.00 1.28
704 773 6.863126 CCTCTTCAATTGCTACGAAACAAATT 59.137 34.615 0.00 0.00 0.00 1.82
708 777 4.637276 TCCTCTTCAATTGCTACGAAACA 58.363 39.130 0.00 0.00 0.00 2.83
712 781 5.123820 CCAAAATCCTCTTCAATTGCTACGA 59.876 40.000 0.00 0.00 0.00 3.43
718 787 3.922240 CACGCCAAAATCCTCTTCAATTG 59.078 43.478 0.00 0.00 0.00 2.32
734 803 3.558931 AATTATCATCTGGACACGCCA 57.441 42.857 0.00 0.00 46.96 5.69
735 804 3.059597 CGAAATTATCATCTGGACACGCC 60.060 47.826 0.00 0.00 37.10 5.68
736 805 3.059597 CCGAAATTATCATCTGGACACGC 60.060 47.826 0.00 0.00 0.00 5.34
737 806 4.119862 ACCGAAATTATCATCTGGACACG 58.880 43.478 0.00 0.00 0.00 4.49
749 818 3.687698 CCGACACAGGAAACCGAAATTAT 59.312 43.478 0.00 0.00 0.00 1.28
757 826 0.534203 TCAAGCCGACACAGGAAACC 60.534 55.000 0.00 0.00 0.00 3.27
780 849 9.110617 CATTTATTTCGATTCGATTTGAGGATG 57.889 33.333 9.96 5.53 35.23 3.51
829 912 6.884187 CAAAGATTCTTTCCATTTGCAACAG 58.116 36.000 8.71 0.00 0.00 3.16
851 934 5.070313 GGGGGCTAATTGATTAGATTTGCAA 59.930 40.000 13.51 0.00 41.72 4.08
872 955 2.365582 CTTTCAACGGTGATTAGGGGG 58.634 52.381 2.76 0.00 32.48 5.40
873 956 2.026636 TCCTTTCAACGGTGATTAGGGG 60.027 50.000 24.18 13.95 36.92 4.79
882 979 6.850752 ATAAAATTGGATCCTTTCAACGGT 57.149 33.333 14.23 0.00 0.00 4.83
922 1019 1.098050 AAATGGGAATCTGCGTCAGC 58.902 50.000 2.45 0.00 45.41 4.26
927 1024 1.267532 CGACGAAAATGGGAATCTGCG 60.268 52.381 0.00 0.00 0.00 5.18
928 1025 1.737793 ACGACGAAAATGGGAATCTGC 59.262 47.619 0.00 0.00 0.00 4.26
931 1028 2.161609 AGCAACGACGAAAATGGGAATC 59.838 45.455 0.00 0.00 0.00 2.52
935 1032 0.109781 CCAGCAACGACGAAAATGGG 60.110 55.000 0.00 0.00 0.00 4.00
936 1033 0.591170 ACCAGCAACGACGAAAATGG 59.409 50.000 0.00 7.10 0.00 3.16
937 1034 2.043411 CAACCAGCAACGACGAAAATG 58.957 47.619 0.00 0.00 0.00 2.32
938 1035 1.673920 ACAACCAGCAACGACGAAAAT 59.326 42.857 0.00 0.00 0.00 1.82
942 1039 0.460459 TCAACAACCAGCAACGACGA 60.460 50.000 0.00 0.00 0.00 4.20
943 1040 0.375454 TTCAACAACCAGCAACGACG 59.625 50.000 0.00 0.00 0.00 5.12
944 1041 1.859998 GCTTCAACAACCAGCAACGAC 60.860 52.381 0.00 0.00 33.45 4.34
945 1042 0.380378 GCTTCAACAACCAGCAACGA 59.620 50.000 0.00 0.00 33.45 3.85
946 1043 0.381801 AGCTTCAACAACCAGCAACG 59.618 50.000 0.00 0.00 35.88 4.10
947 1044 1.678101 AGAGCTTCAACAACCAGCAAC 59.322 47.619 0.00 0.00 35.88 4.17
949 1046 1.311859 CAGAGCTTCAACAACCAGCA 58.688 50.000 0.00 0.00 35.88 4.41
951 1048 0.236711 CGCAGAGCTTCAACAACCAG 59.763 55.000 0.00 0.00 0.00 4.00
952 1049 1.785041 GCGCAGAGCTTCAACAACCA 61.785 55.000 0.30 0.00 44.04 3.67
954 1051 4.522460 GCGCAGAGCTTCAACAAC 57.478 55.556 0.30 0.00 44.04 3.32
964 1066 2.042831 CCCCTTTCCTTGCGCAGAG 61.043 63.158 11.31 11.26 0.00 3.35
1484 1586 1.986575 GCTCCTGGACATTTCGCTGC 61.987 60.000 0.00 0.00 0.00 5.25
1488 1590 1.372087 GGCAGCTCCTGGACATTTCG 61.372 60.000 0.00 0.00 31.21 3.46
1689 1791 0.447801 CGCAGATGGGGAAGTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
1716 1818 3.452474 GGACAGATCCTTCGACATCTTG 58.548 50.000 0.00 0.00 42.45 3.02
1817 1919 0.977108 AAGAGCAGAGCTGAGGAGGG 60.977 60.000 0.85 0.00 39.88 4.30
1890 1992 3.118334 CCAGTGGATCTTTCAGCAGATCT 60.118 47.826 1.68 0.00 46.02 2.75
1927 2029 1.799181 CGTGACCAGTATTCTGCCTCG 60.799 57.143 0.00 0.00 40.09 4.63
1929 2031 1.204941 GTCGTGACCAGTATTCTGCCT 59.795 52.381 0.00 0.00 40.09 4.75
2010 2112 3.123620 GCCCAGCTGTTCTCTGCG 61.124 66.667 13.81 0.00 42.11 5.18
2057 2159 0.537188 TTGGACCTCCTCTGAATCGC 59.463 55.000 0.00 0.00 36.82 4.58
2151 2253 2.766400 GCCTCTCGACCTCAGGACG 61.766 68.421 9.53 9.53 41.67 4.79
2391 2493 3.812053 CAGACTCTTCCAGTTCCTTGTTG 59.188 47.826 0.00 0.00 34.41 3.33
2572 2674 1.668151 GTGAGGACAACGAGCCCAC 60.668 63.158 0.00 0.00 0.00 4.61
2604 2706 4.766373 TCCATGTTACACAATGCAAGATGT 59.234 37.500 0.00 0.00 26.26 3.06
2683 2785 2.060050 TTCGGGCTGTTGAAAAGGAA 57.940 45.000 0.00 0.00 0.00 3.36
2685 2787 1.613437 ACATTCGGGCTGTTGAAAAGG 59.387 47.619 6.12 0.00 0.00 3.11
2688 2790 1.879380 CTGACATTCGGGCTGTTGAAA 59.121 47.619 6.12 0.00 0.00 2.69
2742 2844 2.031012 TCCAAGACACGCAGGCAG 59.969 61.111 0.00 0.00 0.00 4.85
2746 2848 0.668706 CTCAGGTCCAAGACACGCAG 60.669 60.000 0.00 0.00 33.68 5.18
2774 2876 3.491342 GATTTTGGGAGGGCCTCTATTC 58.509 50.000 31.39 15.63 0.00 1.75
2784 2886 2.112815 GCCGACGGATTTTGGGAGG 61.113 63.158 20.50 0.00 0.00 4.30
2806 2908 1.066303 GAGGTACCTCAGATGTCGCAG 59.934 57.143 32.91 0.00 42.31 5.18
2845 2947 1.380112 AGGAGGGTAGGTCGCTGAC 60.380 63.158 0.79 0.79 39.46 3.51
2873 2975 5.245531 TCAAGGTCTGCAAATTTACGAGAT 58.754 37.500 0.00 0.00 0.00 2.75
2919 3021 1.518367 TGGACCAAGGGAGTTTCTGT 58.482 50.000 0.00 0.00 0.00 3.41
3015 3117 6.147492 CAGATAGATGGTTAAGATGCTTCAGC 59.853 42.308 2.07 0.00 42.50 4.26
3097 3199 1.938577 CCTCAATTCAGACATGGCTCG 59.061 52.381 0.00 0.00 0.00 5.03
3168 3270 1.702182 TCAGGAATGGCTTGTTTGCA 58.298 45.000 0.00 0.00 34.04 4.08
3225 3327 4.263506 TGTTCTTCCCCATTCTCTTCTTCC 60.264 45.833 0.00 0.00 0.00 3.46
3239 3341 2.372172 TCTTGGTTCTCCTGTTCTTCCC 59.628 50.000 0.00 0.00 34.23 3.97
3321 3423 5.845985 TTTCACTCACTTTAGCTGAATCG 57.154 39.130 0.00 0.00 0.00 3.34
3363 3465 0.392461 TCTCAACGCTATTGGGTGGC 60.392 55.000 0.00 0.00 39.38 5.01
3585 3687 1.961277 CACAGTGGTGCCGAGGAAC 60.961 63.158 0.00 0.00 38.37 3.62
3611 3713 1.978454 CTTGGGGAATGAGATGGCTC 58.022 55.000 0.00 0.00 41.67 4.70
3870 3972 2.037136 CCTCAGAAGCGCCCTGTTG 61.037 63.158 21.80 16.53 33.57 3.33
3904 4006 2.029918 CGATGGTGAGTGACTTGAGTGA 60.030 50.000 0.00 0.00 0.00 3.41
4031 4133 1.672881 GGAATGCGATGTTCCAGAAGG 59.327 52.381 8.48 0.00 43.67 3.46
4101 4203 2.553268 GCACACTGCAGCTCGAAC 59.447 61.111 15.27 0.00 44.26 3.95
4307 4412 6.657541 ACTTCACAAGTACTGAAAAGTGGAAA 59.342 34.615 0.00 0.00 40.69 3.13
4308 4413 6.177610 ACTTCACAAGTACTGAAAAGTGGAA 58.822 36.000 0.00 0.00 40.69 3.53
4309 4414 5.741011 ACTTCACAAGTACTGAAAAGTGGA 58.259 37.500 0.00 0.00 40.69 4.02
4335 4440 7.175816 TCACTCGAGAGATTAAGGATAAGATGG 59.824 40.741 21.68 0.00 40.84 3.51
4496 4602 0.329261 CCTCAGGCCTCATCAAACCA 59.671 55.000 0.00 0.00 0.00 3.67
4623 4729 0.536460 GCCAGAACCAGGAAACGGAA 60.536 55.000 0.00 0.00 0.00 4.30
4725 5320 4.886247 AAACATTCCGACACGAAAAGAA 57.114 36.364 0.00 0.00 0.00 2.52
4968 5569 5.319453 ACTCCAGAGCATCAAATGAAGAAA 58.681 37.500 0.00 0.00 37.82 2.52
4969 5570 4.914983 ACTCCAGAGCATCAAATGAAGAA 58.085 39.130 0.00 0.00 37.82 2.52
5230 5855 3.455910 TGGGACTGTAAGATTCCTCATGG 59.544 47.826 0.00 0.00 37.43 3.66
5249 5874 2.028484 GCGGCATTGCATCATGGG 59.972 61.111 11.39 0.00 34.15 4.00
5250 5875 2.023414 AAGGCGGCATTGCATCATGG 62.023 55.000 13.08 0.00 36.28 3.66
5258 5883 1.446618 GGCAAGAAAGGCGGCATTG 60.447 57.895 13.08 11.44 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.