Multiple sequence alignment - TraesCS7B01G480600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G480600 chr7B 100.000 2728 0 0 1 2728 734365063 734367790 0.000000e+00 5038.0
1 TraesCS7B01G480600 chr7B 93.857 293 18 0 2436 2728 84542416 84542708 2.490000e-120 442.0
2 TraesCS7B01G480600 chr7B 77.690 632 111 23 1047 1651 734379434 734380062 2.580000e-95 359.0
3 TraesCS7B01G480600 chr7B 79.339 363 55 15 1174 1535 734430399 734430742 1.260000e-58 237.0
4 TraesCS7B01G480600 chr7B 93.333 105 7 0 1772 1876 138653880 138653776 3.640000e-34 156.0
5 TraesCS7B01G480600 chr7B 94.059 101 6 0 1779 1879 713378772 713378872 1.310000e-33 154.0
6 TraesCS7B01G480600 chr7D 87.219 1823 153 31 1 1766 638345264 638343465 0.000000e+00 2002.0
7 TraesCS7B01G480600 chr7D 87.467 758 84 9 908 1656 638354759 638354004 0.000000e+00 863.0
8 TraesCS7B01G480600 chr7D 93.043 460 32 0 1863 2322 638343451 638342992 0.000000e+00 673.0
9 TraesCS7B01G480600 chr7D 83.184 559 64 10 1884 2424 638352367 638351821 4.080000e-133 484.0
10 TraesCS7B01G480600 chr7D 77.230 527 82 26 1154 1649 638288410 638287891 9.620000e-70 274.0
11 TraesCS7B01G480600 chr7D 77.410 363 62 14 1174 1535 638268462 638268119 5.960000e-47 198.0
12 TraesCS7B01G480600 chr7D 87.156 109 9 2 648 753 638354989 638354883 4.770000e-23 119.0
13 TraesCS7B01G480600 chr7D 95.455 44 2 0 740 783 638354871 638354828 1.360000e-08 71.3
14 TraesCS7B01G480600 chr7D 100.000 28 0 0 845 872 638354789 638354762 5.000000e-03 52.8
15 TraesCS7B01G480600 chr7A 84.522 1738 165 33 3 1679 727582662 727584356 0.000000e+00 1624.0
16 TraesCS7B01G480600 chr7A 84.582 1388 112 37 7 1330 727585868 727587217 0.000000e+00 1284.0
17 TraesCS7B01G480600 chr7A 84.015 1101 97 27 7 1068 727579558 727580618 0.000000e+00 985.0
18 TraesCS7B01G480600 chr7A 88.626 633 71 1 1048 1679 727580820 727581452 0.000000e+00 769.0
19 TraesCS7B01G480600 chr7A 92.826 460 33 0 1863 2322 727711067 727711526 0.000000e+00 667.0
20 TraesCS7B01G480600 chr7A 91.957 460 32 1 1863 2322 727597684 727598138 8.240000e-180 640.0
21 TraesCS7B01G480600 chr7A 91.739 230 18 1 728 956 727710099 727710328 4.380000e-83 318.0
22 TraesCS7B01G480600 chr7A 89.862 217 17 5 2427 2640 596993347 596993561 9.620000e-70 274.0
23 TraesCS7B01G480600 chr7A 77.104 511 67 17 1172 1645 727692489 727692986 1.620000e-62 250.0
24 TraesCS7B01G480600 chr7A 76.190 525 94 23 1154 1649 727788101 727788623 5.830000e-62 248.0
25 TraesCS7B01G480600 chr7A 75.530 519 97 24 1158 1649 727773756 727774271 7.600000e-56 228.0
26 TraesCS7B01G480600 chr7A 91.912 136 7 2 648 783 727550771 727550902 1.290000e-43 187.0
27 TraesCS7B01G480600 chr7A 87.395 119 9 6 949 1066 727580699 727580812 6.130000e-27 132.0
28 TraesCS7B01G480600 chr7A 100.000 29 0 0 662 690 727787239 727787267 1.000000e-03 54.7
29 TraesCS7B01G480600 chr5D 91.166 283 25 0 2420 2702 225527667 225527385 4.260000e-103 385.0
30 TraesCS7B01G480600 chr1B 85.484 310 42 3 2420 2728 460564318 460564625 1.220000e-83 320.0
31 TraesCS7B01G480600 chr1B 93.269 104 4 3 1780 1881 687408336 687408234 1.690000e-32 150.0
32 TraesCS7B01G480600 chr4B 91.855 221 18 0 2420 2640 563993483 563993263 2.640000e-80 309.0
33 TraesCS7B01G480600 chr4B 95.789 95 3 1 1779 1873 2431981 2431888 4.700000e-33 152.0
34 TraesCS7B01G480600 chr4B 90.991 111 9 1 1758 1867 11712866 11712976 6.090000e-32 148.0
35 TraesCS7B01G480600 chr5A 84.494 316 39 5 2423 2728 141024583 141024268 1.230000e-78 303.0
36 TraesCS7B01G480600 chr5A 91.589 107 7 2 1773 1878 703838532 703838637 2.190000e-31 147.0
37 TraesCS7B01G480600 chr2B 91.743 218 18 0 2423 2640 463289492 463289275 1.230000e-78 303.0
38 TraesCS7B01G480600 chr1D 83.828 303 47 2 2427 2728 246964339 246964640 1.240000e-73 287.0
39 TraesCS7B01G480600 chr6A 80.195 308 57 4 2423 2728 415104820 415105125 7.600000e-56 228.0
40 TraesCS7B01G480600 chr2A 96.774 93 3 0 1780 1872 695156856 695156764 3.640000e-34 156.0
41 TraesCS7B01G480600 chr4D 94.059 101 5 1 1780 1880 182067338 182067437 4.700000e-33 152.0
42 TraesCS7B01G480600 chr4A 92.523 107 6 2 1761 1865 608187917 608188023 4.700000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G480600 chr7B 734365063 734367790 2727 False 5038.00 5038 100.0000 1 2728 1 chr7B.!!$F3 2727
1 TraesCS7B01G480600 chr7B 734379434 734380062 628 False 359.00 359 77.6900 1047 1651 1 chr7B.!!$F4 604
2 TraesCS7B01G480600 chr7D 638342992 638345264 2272 True 1337.50 2002 90.1310 1 2322 2 chr7D.!!$R3 2321
3 TraesCS7B01G480600 chr7D 638351821 638354989 3168 True 318.02 863 90.6524 648 2424 5 chr7D.!!$R4 1776
4 TraesCS7B01G480600 chr7D 638287891 638288410 519 True 274.00 274 77.2300 1154 1649 1 chr7D.!!$R2 495
5 TraesCS7B01G480600 chr7A 727579558 727587217 7659 False 958.80 1624 85.8280 3 1679 5 chr7A.!!$F6 1676
6 TraesCS7B01G480600 chr7A 727710099 727711526 1427 False 492.50 667 92.2825 728 2322 2 chr7A.!!$F7 1594
7 TraesCS7B01G480600 chr7A 727773756 727774271 515 False 228.00 228 75.5300 1158 1649 1 chr7A.!!$F5 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.188342 AGTTTCCTGCCAACACCCAT 59.812 50.0 0.0 0.0 0.0 4.00 F
365 367 0.320683 TGATGCAGTTGTGTCCCTCG 60.321 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1792 1.302431 CACGTGGAAGGCATGACCA 60.302 57.895 7.95 0.0 43.14 4.02 R
2137 7462 1.171308 GATTGCTGCCACTCACACAT 58.829 50.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.953686 GTGCTAAGTTTCCTGCCAACA 59.046 47.619 0.00 0.00 0.00 3.33
37 38 0.188342 AGTTTCCTGCCAACACCCAT 59.812 50.000 0.00 0.00 0.00 4.00
39 40 1.047002 TTTCCTGCCAACACCCATTG 58.953 50.000 0.00 0.00 0.00 2.82
59 60 7.233144 CCCATTGAATCCACACATAATCCATAA 59.767 37.037 0.00 0.00 0.00 1.90
104 105 5.954335 ACTTAAAGTTTCATGCATGTAGGC 58.046 37.500 25.43 12.94 0.00 3.93
193 195 4.640364 TCATGATTTTTGTTGAAAGGGGC 58.360 39.130 0.00 0.00 0.00 5.80
223 225 2.124277 ACCTATTTTCCCGCTTCACC 57.876 50.000 0.00 0.00 0.00 4.02
238 240 5.278758 CCGCTTCACCTCCAAATAAGAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
327 329 4.099266 ACAGTGTTTGGCATGTACACATTT 59.901 37.500 21.97 9.14 43.46 2.32
365 367 0.320683 TGATGCAGTTGTGTCCCTCG 60.321 55.000 0.00 0.00 0.00 4.63
370 372 1.197721 GCAGTTGTGTCCCTCGAATTG 59.802 52.381 0.00 0.00 0.00 2.32
393 395 8.415950 TTGGTCCAGACACAAACATATAATTT 57.584 30.769 0.00 0.00 0.00 1.82
414 416 3.230134 TGTGGGGATGGAGAAACAAAAG 58.770 45.455 0.00 0.00 0.00 2.27
428 442 8.417106 GGAGAAACAAAAGGAAGAGAGAAAAAT 58.583 33.333 0.00 0.00 0.00 1.82
490 509 4.287067 GCCCTCATTTCCTCCTCACATATA 59.713 45.833 0.00 0.00 0.00 0.86
499 518 3.553096 CCTCCTCACATATAAGCGGACAC 60.553 52.174 0.00 0.00 0.00 3.67
516 535 3.181454 GGACACCCCGAACATATGAAGAT 60.181 47.826 10.38 0.00 0.00 2.40
539 558 4.290985 TGATTTGGGAGTCTGGTTGGATAA 59.709 41.667 0.00 0.00 0.00 1.75
577 596 1.071228 GTCTCAACACTACCGGGGTTT 59.929 52.381 6.32 0.00 39.94 3.27
581 600 1.134228 AACACTACCGGGGTTTGTCT 58.866 50.000 6.32 0.00 38.61 3.41
606 625 5.617252 TCCGGACATATGGAAAGGATTTAC 58.383 41.667 0.00 0.00 39.27 2.01
617 636 4.262617 GAAAGGATTTACTGTCCCTGGTC 58.737 47.826 0.00 0.00 39.27 4.02
747 812 8.697846 TTAGTTACTATTTTCACCACTGATCG 57.302 34.615 0.00 0.00 0.00 3.69
793 861 3.825014 CCTAGATTCTTCATTGGCATGGG 59.175 47.826 0.00 0.00 0.00 4.00
875 949 2.555757 GCATGGACAAATATCCTGGAGC 59.444 50.000 1.52 0.00 39.75 4.70
907 982 1.227147 CCATACCGCCACTACCACG 60.227 63.158 0.00 0.00 0.00 4.94
978 1054 4.693566 CCCACTGACGCTATAAAAAGAACA 59.306 41.667 0.00 0.00 0.00 3.18
1001 1077 1.374252 GTTCGCAGTCCACGGTCAT 60.374 57.895 0.00 0.00 0.00 3.06
1221 1541 4.092652 CAATGCTGTGCGCGCTCA 62.093 61.111 33.29 32.02 43.27 4.26
1306 1635 1.852626 CCTCCTTCAACCCACCCCT 60.853 63.158 0.00 0.00 0.00 4.79
1378 1710 3.946201 AGCCGCTTCACCACAGCT 61.946 61.111 0.00 0.00 34.88 4.24
1406 1747 1.595382 GGAGTGCGCGATATGCCTT 60.595 57.895 12.10 0.00 42.08 4.35
1451 1792 2.660552 CGTGTTCTCCCGCGTTGT 60.661 61.111 4.92 0.00 33.84 3.32
1454 1795 2.280592 GTTCTCCCGCGTTGTGGT 60.281 61.111 4.92 0.00 0.00 4.16
1469 1810 1.302431 TGGTCATGCCTTCCACGTG 60.302 57.895 9.08 9.08 38.35 4.49
1529 1870 2.046023 TCTTGCCGTGCCTCCATG 60.046 61.111 0.00 0.00 0.00 3.66
1631 1984 4.344865 CCGGTTGGTGGTGGGGAG 62.345 72.222 0.00 0.00 0.00 4.30
1658 2012 5.977129 CACGTTCTTGCCTTAATCAGTTTTT 59.023 36.000 0.00 0.00 0.00 1.94
1687 2041 3.231818 TCGTCTGTTCTCTTTTCCTCCT 58.768 45.455 0.00 0.00 0.00 3.69
1700 2054 5.995897 TCTTTTCCTCCTGTTTGCTAGTTAC 59.004 40.000 0.00 0.00 0.00 2.50
1785 3874 6.770746 TTACTCCTACATGAGTTGTACTCC 57.229 41.667 0.00 0.00 44.44 3.85
1786 3875 4.024670 ACTCCTACATGAGTTGTACTCCC 58.975 47.826 0.00 0.00 44.44 4.30
1787 3876 4.264442 ACTCCTACATGAGTTGTACTCCCT 60.264 45.833 0.00 0.00 44.44 4.20
1788 3877 4.279145 TCCTACATGAGTTGTACTCCCTC 58.721 47.826 0.00 0.00 44.44 4.30
1789 3878 4.017407 TCCTACATGAGTTGTACTCCCTCT 60.017 45.833 0.00 0.00 44.44 3.69
1790 3879 4.098654 CCTACATGAGTTGTACTCCCTCTG 59.901 50.000 0.00 1.10 44.44 3.35
1791 3880 3.511477 ACATGAGTTGTACTCCCTCTGT 58.489 45.455 0.00 1.63 44.44 3.41
1792 3881 4.673968 ACATGAGTTGTACTCCCTCTGTA 58.326 43.478 0.00 0.00 44.44 2.74
1793 3882 5.084519 ACATGAGTTGTACTCCCTCTGTAA 58.915 41.667 0.00 0.00 44.44 2.41
1794 3883 5.542635 ACATGAGTTGTACTCCCTCTGTAAA 59.457 40.000 0.00 0.00 44.44 2.01
1795 3884 6.213600 ACATGAGTTGTACTCCCTCTGTAAAT 59.786 38.462 0.00 0.00 44.44 1.40
1796 3885 6.681729 TGAGTTGTACTCCCTCTGTAAATT 57.318 37.500 4.52 0.00 44.44 1.82
1797 3886 7.786046 TGAGTTGTACTCCCTCTGTAAATTA 57.214 36.000 4.52 0.00 44.44 1.40
1798 3887 8.197592 TGAGTTGTACTCCCTCTGTAAATTAA 57.802 34.615 4.52 0.00 44.44 1.40
1799 3888 8.822805 TGAGTTGTACTCCCTCTGTAAATTAAT 58.177 33.333 4.52 0.00 44.44 1.40
1808 3897 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
1809 3898 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
1810 3899 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
1826 3915 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
1827 3916 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
1859 3948 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
1860 3949 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
1861 3950 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
1922 6710 5.126869 TGTGCTTCATTTTCTTCAACTTCCA 59.873 36.000 0.00 0.00 0.00 3.53
2137 7462 9.184523 AGTGCCACAATAGCTTTTAATATGTTA 57.815 29.630 0.00 0.00 0.00 2.41
2158 7483 1.242076 GTGTGAGTGGCAGCAATCTT 58.758 50.000 0.00 0.00 0.00 2.40
2166 7491 1.266718 TGGCAGCAATCTTTTGTCGTC 59.733 47.619 0.00 0.00 35.17 4.20
2234 7718 7.970614 CCAATTAAGTTTTTAGTCTCCATCTGC 59.029 37.037 0.00 0.00 0.00 4.26
2261 7745 5.703730 ATTCCCCATTGATTGAAGCAAAT 57.296 34.783 0.00 0.00 0.00 2.32
2274 7758 8.704668 TGATTGAAGCAAATAGACTAGATACCA 58.295 33.333 0.00 0.00 0.00 3.25
2324 8363 6.655078 AAGTGCAAGGACAAATCATAGTTT 57.345 33.333 0.00 0.00 0.00 2.66
2330 8369 7.867403 TGCAAGGACAAATCATAGTTTCTTTTC 59.133 33.333 0.00 0.00 0.00 2.29
2331 8370 7.329471 GCAAGGACAAATCATAGTTTCTTTTCC 59.671 37.037 0.00 0.00 0.00 3.13
2332 8371 8.579863 CAAGGACAAATCATAGTTTCTTTTCCT 58.420 33.333 0.00 0.00 0.00 3.36
2333 8372 8.115490 AGGACAAATCATAGTTTCTTTTCCTG 57.885 34.615 0.00 0.00 0.00 3.86
2335 8374 7.809806 GGACAAATCATAGTTTCTTTTCCTGTG 59.190 37.037 0.00 0.00 0.00 3.66
2336 8375 8.237811 ACAAATCATAGTTTCTTTTCCTGTGT 57.762 30.769 0.00 0.00 0.00 3.72
2377 8417 8.314751 TCTTTGTTGGTAGACATTTTCCAAAAA 58.685 29.630 0.00 0.00 40.82 1.94
2413 8453 1.315257 ATGCCAACTTTAGCTGCCCG 61.315 55.000 0.00 0.00 0.00 6.13
2420 8460 2.463589 CTTTAGCTGCCCGGTCACCA 62.464 60.000 0.00 0.00 0.00 4.17
2425 8465 2.044806 GCTGCCCGGTCACCATATCT 62.045 60.000 0.00 0.00 0.00 1.98
2426 8466 0.469917 CTGCCCGGTCACCATATCTT 59.530 55.000 0.00 0.00 0.00 2.40
2428 8468 2.303022 CTGCCCGGTCACCATATCTTAT 59.697 50.000 0.00 0.00 0.00 1.73
2429 8469 3.512496 TGCCCGGTCACCATATCTTATA 58.488 45.455 0.00 0.00 0.00 0.98
2431 8471 5.274015 TGCCCGGTCACCATATCTTATATA 58.726 41.667 0.00 0.00 0.00 0.86
2432 8472 5.128171 TGCCCGGTCACCATATCTTATATAC 59.872 44.000 0.00 0.00 0.00 1.47
2433 8473 5.452917 GCCCGGTCACCATATCTTATATACC 60.453 48.000 0.00 0.00 0.00 2.73
2434 8474 5.897824 CCCGGTCACCATATCTTATATACCT 59.102 44.000 0.00 0.00 0.00 3.08
2435 8475 7.064866 CCCGGTCACCATATCTTATATACCTA 58.935 42.308 0.00 0.00 0.00 3.08
2436 8476 7.562454 CCCGGTCACCATATCTTATATACCTAA 59.438 40.741 0.00 0.00 0.00 2.69
2437 8477 8.630917 CCGGTCACCATATCTTATATACCTAAG 58.369 40.741 0.00 0.00 0.00 2.18
2450 8490 9.494055 CTTATATACCTAAGAGATTCATCCCCA 57.506 37.037 0.00 0.00 31.58 4.96
2451 8491 7.741554 ATATACCTAAGAGATTCATCCCCAC 57.258 40.000 0.00 0.00 0.00 4.61
2452 8492 4.014273 ACCTAAGAGATTCATCCCCACT 57.986 45.455 0.00 0.00 0.00 4.00
2453 8493 5.157770 ACCTAAGAGATTCATCCCCACTA 57.842 43.478 0.00 0.00 0.00 2.74
2454 8494 5.731924 ACCTAAGAGATTCATCCCCACTAT 58.268 41.667 0.00 0.00 0.00 2.12
2455 8495 5.782845 ACCTAAGAGATTCATCCCCACTATC 59.217 44.000 0.00 0.00 0.00 2.08
2456 8496 5.188751 CCTAAGAGATTCATCCCCACTATCC 59.811 48.000 0.00 0.00 0.00 2.59
2457 8497 4.500389 AGAGATTCATCCCCACTATCCT 57.500 45.455 0.00 0.00 0.00 3.24
2459 8499 6.177663 AGAGATTCATCCCCACTATCCTAT 57.822 41.667 0.00 0.00 0.00 2.57
2461 8501 7.028131 AGAGATTCATCCCCACTATCCTATTT 58.972 38.462 0.00 0.00 0.00 1.40
2462 8502 8.186985 AGAGATTCATCCCCACTATCCTATTTA 58.813 37.037 0.00 0.00 0.00 1.40
2463 8503 8.940012 AGATTCATCCCCACTATCCTATTTAT 57.060 34.615 0.00 0.00 0.00 1.40
2464 8504 8.997734 AGATTCATCCCCACTATCCTATTTATC 58.002 37.037 0.00 0.00 0.00 1.75
2465 8505 8.940012 ATTCATCCCCACTATCCTATTTATCT 57.060 34.615 0.00 0.00 0.00 1.98
2467 8507 8.150827 TCATCCCCACTATCCTATTTATCTTG 57.849 38.462 0.00 0.00 0.00 3.02
2469 8509 7.554959 TCCCCACTATCCTATTTATCTTGAC 57.445 40.000 0.00 0.00 0.00 3.18
2470 8510 7.079700 TCCCCACTATCCTATTTATCTTGACA 58.920 38.462 0.00 0.00 0.00 3.58
2471 8511 7.739444 TCCCCACTATCCTATTTATCTTGACAT 59.261 37.037 0.00 0.00 0.00 3.06
2472 8512 7.826252 CCCCACTATCCTATTTATCTTGACATG 59.174 40.741 0.00 0.00 0.00 3.21
2473 8513 8.378565 CCCACTATCCTATTTATCTTGACATGT 58.621 37.037 0.00 0.00 0.00 3.21
2485 8525 6.560003 ATCTTGACATGTAACCTATCCACA 57.440 37.500 0.00 0.00 0.00 4.17
2486 8526 6.560003 TCTTGACATGTAACCTATCCACAT 57.440 37.500 0.00 0.00 33.22 3.21
2487 8527 6.582636 TCTTGACATGTAACCTATCCACATC 58.417 40.000 0.00 0.00 30.59 3.06
2488 8528 5.948742 TGACATGTAACCTATCCACATCA 57.051 39.130 0.00 0.00 30.59 3.07
2489 8529 6.499106 TGACATGTAACCTATCCACATCAT 57.501 37.500 0.00 0.00 30.59 2.45
2490 8530 6.524734 TGACATGTAACCTATCCACATCATC 58.475 40.000 0.00 0.00 30.59 2.92
2491 8531 6.099557 TGACATGTAACCTATCCACATCATCA 59.900 38.462 0.00 0.00 30.59 3.07
2493 8533 7.520798 ACATGTAACCTATCCACATCATCAAT 58.479 34.615 0.00 0.00 30.59 2.57
2494 8534 8.000709 ACATGTAACCTATCCACATCATCAATT 58.999 33.333 0.00 0.00 30.59 2.32
2496 8536 9.730705 ATGTAACCTATCCACATCATCAATTAG 57.269 33.333 0.00 0.00 0.00 1.73
2498 8538 6.770286 ACCTATCCACATCATCAATTAGGT 57.230 37.500 0.00 0.00 0.00 3.08
2503 8543 5.624159 TCCACATCATCAATTAGGTCCATC 58.376 41.667 0.00 0.00 0.00 3.51
2504 8544 5.132480 TCCACATCATCAATTAGGTCCATCA 59.868 40.000 0.00 0.00 0.00 3.07
2505 8545 6.008331 CCACATCATCAATTAGGTCCATCAT 58.992 40.000 0.00 0.00 0.00 2.45
2506 8546 6.492429 CCACATCATCAATTAGGTCCATCATT 59.508 38.462 0.00 0.00 0.00 2.57
2507 8547 7.014905 CCACATCATCAATTAGGTCCATCATTT 59.985 37.037 0.00 0.00 0.00 2.32
2508 8548 9.070179 CACATCATCAATTAGGTCCATCATTTA 57.930 33.333 0.00 0.00 0.00 1.40
2509 8549 9.645128 ACATCATCAATTAGGTCCATCATTTAA 57.355 29.630 0.00 0.00 0.00 1.52
2520 8560 7.896811 AGGTCCATCATTTAAAAACTCTTTCC 58.103 34.615 0.00 0.00 0.00 3.13
2522 8562 7.256154 GGTCCATCATTTAAAAACTCTTTCCCA 60.256 37.037 0.00 0.00 0.00 4.37
2523 8563 7.598869 GTCCATCATTTAAAAACTCTTTCCCAC 59.401 37.037 0.00 0.00 0.00 4.61
2524 8564 7.508977 TCCATCATTTAAAAACTCTTTCCCACT 59.491 33.333 0.00 0.00 0.00 4.00
2525 8565 8.802267 CCATCATTTAAAAACTCTTTCCCACTA 58.198 33.333 0.00 0.00 0.00 2.74
2528 8568 9.416284 TCATTTAAAAACTCTTTCCCACTAACT 57.584 29.630 0.00 0.00 0.00 2.24
2529 8569 9.678941 CATTTAAAAACTCTTTCCCACTAACTC 57.321 33.333 0.00 0.00 0.00 3.01
2531 8571 9.470399 TTTAAAAACTCTTTCCCACTAACTCTT 57.530 29.630 0.00 0.00 0.00 2.85
2533 8573 5.888982 AACTCTTTCCCACTAACTCTTCA 57.111 39.130 0.00 0.00 0.00 3.02
2534 8574 6.441088 AACTCTTTCCCACTAACTCTTCAT 57.559 37.500 0.00 0.00 0.00 2.57
2535 8575 5.799213 ACTCTTTCCCACTAACTCTTCATG 58.201 41.667 0.00 0.00 0.00 3.07
2539 8579 2.637382 TCCCACTAACTCTTCATGCACA 59.363 45.455 0.00 0.00 0.00 4.57
2540 8580 3.264193 TCCCACTAACTCTTCATGCACAT 59.736 43.478 0.00 0.00 0.00 3.21
2541 8581 3.376234 CCCACTAACTCTTCATGCACATG 59.624 47.826 4.18 4.18 40.09 3.21
2543 8583 3.012518 ACTAACTCTTCATGCACATGCC 58.987 45.455 5.73 0.00 41.18 4.40
2546 8586 1.380246 TCTTCATGCACATGCCCCC 60.380 57.895 5.73 0.00 41.18 5.40
2547 8587 1.380785 CTTCATGCACATGCCCCCT 60.381 57.895 5.73 0.00 41.18 4.79
2550 8590 0.987613 TCATGCACATGCCCCCTCTA 60.988 55.000 5.73 0.00 41.18 2.43
2551 8591 0.536687 CATGCACATGCCCCCTCTAG 60.537 60.000 0.49 0.00 41.18 2.43
2552 8592 2.203266 GCACATGCCCCCTCTAGC 60.203 66.667 0.00 0.00 34.31 3.42
2553 8593 2.750657 GCACATGCCCCCTCTAGCT 61.751 63.158 0.00 0.00 34.31 3.32
2554 8594 1.918253 CACATGCCCCCTCTAGCTT 59.082 57.895 0.00 0.00 0.00 3.74
2555 8595 0.257039 CACATGCCCCCTCTAGCTTT 59.743 55.000 0.00 0.00 0.00 3.51
2556 8596 1.002857 ACATGCCCCCTCTAGCTTTT 58.997 50.000 0.00 0.00 0.00 2.27
2558 8598 1.064463 CATGCCCCCTCTAGCTTTTCA 60.064 52.381 0.00 0.00 0.00 2.69
2559 8599 1.298953 TGCCCCCTCTAGCTTTTCAT 58.701 50.000 0.00 0.00 0.00 2.57
2560 8600 1.064463 TGCCCCCTCTAGCTTTTCATG 60.064 52.381 0.00 0.00 0.00 3.07
2563 8603 1.685148 CCCTCTAGCTTTTCATGGGC 58.315 55.000 0.00 0.00 0.00 5.36
2565 8605 2.423947 CCCTCTAGCTTTTCATGGGCAT 60.424 50.000 0.00 0.00 0.00 4.40
2567 8607 2.026641 TCTAGCTTTTCATGGGCATGC 58.973 47.619 9.90 9.90 38.65 4.06
2568 8608 1.752498 CTAGCTTTTCATGGGCATGCA 59.248 47.619 21.36 0.00 38.65 3.96
2569 8609 0.978151 AGCTTTTCATGGGCATGCAA 59.022 45.000 21.36 7.48 38.65 4.08
2570 8610 1.081094 GCTTTTCATGGGCATGCAAC 58.919 50.000 21.36 12.40 38.65 4.17
2571 8611 1.338389 GCTTTTCATGGGCATGCAACT 60.338 47.619 21.36 0.00 38.65 3.16
2572 8612 2.872842 GCTTTTCATGGGCATGCAACTT 60.873 45.455 21.36 7.10 38.65 2.66
2573 8613 3.617045 GCTTTTCATGGGCATGCAACTTA 60.617 43.478 21.36 0.27 38.65 2.24
2574 8614 4.761975 CTTTTCATGGGCATGCAACTTAT 58.238 39.130 21.36 2.85 38.65 1.73
2575 8615 4.389890 TTTCATGGGCATGCAACTTATC 57.610 40.909 21.36 0.00 38.65 1.75
2576 8616 3.015675 TCATGGGCATGCAACTTATCA 57.984 42.857 21.36 5.94 38.65 2.15
2578 8618 2.212812 TGGGCATGCAACTTATCACA 57.787 45.000 21.36 0.91 0.00 3.58
2579 8619 2.523245 TGGGCATGCAACTTATCACAA 58.477 42.857 21.36 0.00 0.00 3.33
2580 8620 2.896044 TGGGCATGCAACTTATCACAAA 59.104 40.909 21.36 0.00 0.00 2.83
2583 8623 5.186603 TGGGCATGCAACTTATCACAAATAA 59.813 36.000 21.36 0.00 0.00 1.40
2584 8624 5.519927 GGGCATGCAACTTATCACAAATAAC 59.480 40.000 21.36 0.00 0.00 1.89
2585 8625 5.519927 GGCATGCAACTTATCACAAATAACC 59.480 40.000 21.36 0.00 0.00 2.85
2586 8626 6.098679 GCATGCAACTTATCACAAATAACCA 58.901 36.000 14.21 0.00 0.00 3.67
2587 8627 6.757947 GCATGCAACTTATCACAAATAACCAT 59.242 34.615 14.21 0.00 0.00 3.55
2588 8628 7.278424 GCATGCAACTTATCACAAATAACCATT 59.722 33.333 14.21 0.00 0.00 3.16
2589 8629 9.800433 CATGCAACTTATCACAAATAACCATTA 57.200 29.630 0.00 0.00 0.00 1.90
2592 8632 8.190784 GCAACTTATCACAAATAACCATTAGCT 58.809 33.333 0.00 0.00 0.00 3.32
2617 8657 2.169832 TTGTGCACTCTCAAGTAGCC 57.830 50.000 19.41 0.00 33.25 3.93
2619 8659 1.270305 TGTGCACTCTCAAGTAGCCAC 60.270 52.381 19.41 0.00 33.25 5.01
2621 8661 1.355066 GCACTCTCAAGTAGCCACGC 61.355 60.000 0.00 0.00 33.25 5.34
2622 8662 0.244994 CACTCTCAAGTAGCCACGCT 59.755 55.000 0.00 0.00 43.41 5.07
2623 8663 1.472878 CACTCTCAAGTAGCCACGCTA 59.527 52.381 0.00 0.00 40.44 4.26
2624 8664 2.099921 CACTCTCAAGTAGCCACGCTAT 59.900 50.000 0.00 0.00 43.30 2.97
2626 8666 3.181485 ACTCTCAAGTAGCCACGCTATTC 60.181 47.826 0.00 0.00 43.30 1.75
2627 8667 3.024547 TCTCAAGTAGCCACGCTATTCT 58.975 45.455 0.00 0.00 43.30 2.40
2629 8669 4.276183 TCTCAAGTAGCCACGCTATTCTAG 59.724 45.833 0.00 0.00 43.30 2.43
2630 8670 3.318275 TCAAGTAGCCACGCTATTCTAGG 59.682 47.826 0.00 0.00 43.30 3.02
2631 8671 2.946785 AGTAGCCACGCTATTCTAGGT 58.053 47.619 0.00 0.00 43.30 3.08
2632 8672 3.297736 AGTAGCCACGCTATTCTAGGTT 58.702 45.455 0.00 0.00 43.30 3.50
2633 8673 3.705072 AGTAGCCACGCTATTCTAGGTTT 59.295 43.478 0.00 0.00 43.30 3.27
2634 8674 3.180891 AGCCACGCTATTCTAGGTTTC 57.819 47.619 0.00 0.00 36.99 2.78
2635 8675 2.766828 AGCCACGCTATTCTAGGTTTCT 59.233 45.455 0.00 0.00 36.99 2.52
2636 8676 3.124560 GCCACGCTATTCTAGGTTTCTC 58.875 50.000 0.00 0.00 0.00 2.87
2638 8678 4.680975 GCCACGCTATTCTAGGTTTCTCTT 60.681 45.833 0.00 0.00 0.00 2.85
2640 8680 5.411781 CACGCTATTCTAGGTTTCTCTTGT 58.588 41.667 0.00 0.00 0.00 3.16
2641 8681 5.869888 CACGCTATTCTAGGTTTCTCTTGTT 59.130 40.000 0.00 0.00 0.00 2.83
2645 8685 7.100409 GCTATTCTAGGTTTCTCTTGTTGTCT 58.900 38.462 0.00 0.00 0.00 3.41
2646 8686 8.251721 GCTATTCTAGGTTTCTCTTGTTGTCTA 58.748 37.037 0.00 0.00 0.00 2.59
2660 8700 9.175060 CTCTTGTTGTCTATATATGTCTTGACG 57.825 37.037 0.00 0.00 0.00 4.35
2661 8701 8.135529 TCTTGTTGTCTATATATGTCTTGACGG 58.864 37.037 0.00 0.00 0.00 4.79
2662 8702 6.213677 TGTTGTCTATATATGTCTTGACGGC 58.786 40.000 0.00 0.00 0.00 5.68
2663 8703 6.183360 TGTTGTCTATATATGTCTTGACGGCA 60.183 38.462 0.00 0.00 0.00 5.69
2664 8704 6.590234 TGTCTATATATGTCTTGACGGCAT 57.410 37.500 0.00 0.00 0.00 4.40
2665 8705 7.696992 TGTCTATATATGTCTTGACGGCATA 57.303 36.000 0.00 0.00 0.00 3.14
2666 8706 8.293699 TGTCTATATATGTCTTGACGGCATAT 57.706 34.615 0.00 1.67 38.73 1.78
2667 8707 8.190784 TGTCTATATATGTCTTGACGGCATATG 58.809 37.037 6.33 0.00 36.72 1.78
2668 8708 8.406297 GTCTATATATGTCTTGACGGCATATGA 58.594 37.037 6.97 0.00 36.72 2.15
2669 8709 9.136323 TCTATATATGTCTTGACGGCATATGAT 57.864 33.333 6.97 0.53 36.72 2.45
2670 8710 9.404348 CTATATATGTCTTGACGGCATATGATC 57.596 37.037 6.97 1.01 36.72 2.92
2672 8712 2.700371 TGTCTTGACGGCATATGATCCT 59.300 45.455 6.97 0.00 0.00 3.24
2673 8713 3.243873 TGTCTTGACGGCATATGATCCTC 60.244 47.826 6.97 0.35 0.00 3.71
2674 8714 2.300152 TCTTGACGGCATATGATCCTCC 59.700 50.000 6.97 0.00 0.00 4.30
2675 8715 0.976641 TGACGGCATATGATCCTCCC 59.023 55.000 6.97 0.00 0.00 4.30
2676 8716 0.250513 GACGGCATATGATCCTCCCC 59.749 60.000 6.97 0.00 0.00 4.81
2677 8717 0.473694 ACGGCATATGATCCTCCCCA 60.474 55.000 6.97 0.00 0.00 4.96
2678 8718 0.692476 CGGCATATGATCCTCCCCAA 59.308 55.000 6.97 0.00 0.00 4.12
2679 8719 1.073763 CGGCATATGATCCTCCCCAAA 59.926 52.381 6.97 0.00 0.00 3.28
2680 8720 2.291153 CGGCATATGATCCTCCCCAAAT 60.291 50.000 6.97 0.00 0.00 2.32
2681 8721 3.094572 GGCATATGATCCTCCCCAAATG 58.905 50.000 6.97 0.00 0.00 2.32
2684 8724 4.338879 CATATGATCCTCCCCAAATGTCC 58.661 47.826 0.00 0.00 0.00 4.02
2685 8725 1.679981 TGATCCTCCCCAAATGTCCA 58.320 50.000 0.00 0.00 0.00 4.02
2688 8728 1.153539 TCCTCCCCAAATGTCCAACA 58.846 50.000 0.00 0.00 0.00 3.33
2691 8731 0.474614 TCCCCAAATGTCCAACACGA 59.525 50.000 0.00 0.00 0.00 4.35
2692 8732 0.881118 CCCCAAATGTCCAACACGAG 59.119 55.000 0.00 0.00 0.00 4.18
2693 8733 1.604604 CCCAAATGTCCAACACGAGT 58.395 50.000 0.00 0.00 0.00 4.18
2694 8734 1.535462 CCCAAATGTCCAACACGAGTC 59.465 52.381 0.00 0.00 0.00 3.36
2695 8735 1.535462 CCAAATGTCCAACACGAGTCC 59.465 52.381 0.00 0.00 0.00 3.85
2696 8736 1.535462 CAAATGTCCAACACGAGTCCC 59.465 52.381 0.00 0.00 0.00 4.46
2698 8738 2.048503 GTCCAACACGAGTCCCCG 60.049 66.667 0.00 0.00 0.00 5.73
2700 8740 2.135581 TCCAACACGAGTCCCCGTT 61.136 57.895 0.00 0.00 41.29 4.44
2702 8742 1.068417 CAACACGAGTCCCCGTTCA 59.932 57.895 0.00 0.00 41.29 3.18
2703 8743 0.531090 CAACACGAGTCCCCGTTCAA 60.531 55.000 0.00 0.00 41.29 2.69
2704 8744 0.178533 AACACGAGTCCCCGTTCAAA 59.821 50.000 0.00 0.00 41.29 2.69
2705 8745 0.531311 ACACGAGTCCCCGTTCAAAC 60.531 55.000 0.00 0.00 41.29 2.93
2706 8746 0.531090 CACGAGTCCCCGTTCAAACA 60.531 55.000 0.00 0.00 41.29 2.83
2707 8747 0.395312 ACGAGTCCCCGTTCAAACAT 59.605 50.000 0.00 0.00 40.17 2.71
2708 8748 1.202722 ACGAGTCCCCGTTCAAACATT 60.203 47.619 0.00 0.00 40.17 2.71
2709 8749 1.877443 CGAGTCCCCGTTCAAACATTT 59.123 47.619 0.00 0.00 0.00 2.32
2710 8750 2.350388 CGAGTCCCCGTTCAAACATTTG 60.350 50.000 0.00 0.00 39.48 2.32
2711 8751 1.960689 AGTCCCCGTTCAAACATTTGG 59.039 47.619 4.58 0.00 38.66 3.28
2712 8752 1.684450 GTCCCCGTTCAAACATTTGGT 59.316 47.619 4.58 0.00 38.66 3.67
2713 8753 2.101750 GTCCCCGTTCAAACATTTGGTT 59.898 45.455 4.58 0.00 42.98 3.67
2714 8754 3.318557 GTCCCCGTTCAAACATTTGGTTA 59.681 43.478 4.58 0.00 39.29 2.85
2718 8758 4.277423 CCCGTTCAAACATTTGGTTAGACT 59.723 41.667 4.58 0.00 39.29 3.24
2719 8759 5.221165 CCCGTTCAAACATTTGGTTAGACTT 60.221 40.000 4.58 0.00 39.29 3.01
2721 8761 6.459024 CCGTTCAAACATTTGGTTAGACTTCA 60.459 38.462 4.58 0.00 39.29 3.02
2722 8762 6.413818 CGTTCAAACATTTGGTTAGACTTCAC 59.586 38.462 4.58 0.00 39.29 3.18
2723 8763 6.055231 TCAAACATTTGGTTAGACTTCACG 57.945 37.500 4.58 0.00 39.29 4.35
2724 8764 5.587043 TCAAACATTTGGTTAGACTTCACGT 59.413 36.000 4.58 0.00 39.29 4.49
2725 8765 5.418310 AACATTTGGTTAGACTTCACGTG 57.582 39.130 9.94 9.94 38.15 4.49
2727 8767 4.879545 ACATTTGGTTAGACTTCACGTGTT 59.120 37.500 16.51 0.67 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.187117 TTCAATGGGTGTTGGCAGGA 59.813 50.000 0.00 0.00 0.00 3.86
32 33 4.895297 GGATTATGTGTGGATTCAATGGGT 59.105 41.667 0.00 0.00 0.00 4.51
78 79 8.190784 GCCTACATGCATGAAACTTTAAGTAAT 58.809 33.333 32.75 7.76 0.00 1.89
79 80 7.535139 GCCTACATGCATGAAACTTTAAGTAA 58.465 34.615 32.75 0.00 0.00 2.24
80 81 6.183360 CGCCTACATGCATGAAACTTTAAGTA 60.183 38.462 32.75 9.63 0.00 2.24
81 82 5.391950 CGCCTACATGCATGAAACTTTAAGT 60.392 40.000 32.75 8.94 0.00 2.24
82 83 5.030295 CGCCTACATGCATGAAACTTTAAG 58.970 41.667 32.75 14.44 0.00 1.85
83 84 4.457603 ACGCCTACATGCATGAAACTTTAA 59.542 37.500 32.75 6.63 0.00 1.52
84 85 4.006989 ACGCCTACATGCATGAAACTTTA 58.993 39.130 32.75 12.47 0.00 1.85
85 86 2.819608 ACGCCTACATGCATGAAACTTT 59.180 40.909 32.75 11.95 0.00 2.66
104 105 0.949105 GTGAAGGGTGCCAGTACACG 60.949 60.000 0.00 0.00 41.65 4.49
171 173 4.504689 GGCCCCTTTCAACAAAAATCATGA 60.505 41.667 0.00 0.00 0.00 3.07
189 191 0.104620 TAGGTAGATTCCAGGGCCCC 60.105 60.000 21.43 0.54 0.00 5.80
193 195 4.505039 CGGGAAAATAGGTAGATTCCAGGG 60.505 50.000 5.82 0.00 42.50 4.45
223 225 8.514594 TGCTCTGTGTATTTTTCTTATTTGGAG 58.485 33.333 0.00 0.00 0.00 3.86
238 240 3.244009 CCGATTGGAGATGCTCTGTGTAT 60.244 47.826 0.00 0.00 37.49 2.29
327 329 4.163441 TCAACAGACAAATGAGGGTTCA 57.837 40.909 0.00 0.00 37.81 3.18
365 367 4.853924 ATGTTTGTGTCTGGACCAATTC 57.146 40.909 0.00 0.00 0.00 2.17
370 372 7.826690 ACAAATTATATGTTTGTGTCTGGACC 58.173 34.615 15.88 0.00 45.27 4.46
393 395 3.230134 CTTTTGTTTCTCCATCCCCACA 58.770 45.455 0.00 0.00 0.00 4.17
414 416 7.333174 CAGACCACTCTTATTTTTCTCTCTTCC 59.667 40.741 0.00 0.00 0.00 3.46
428 442 5.939883 CCATGTTGAATTCAGACCACTCTTA 59.060 40.000 8.41 0.00 0.00 2.10
499 518 5.048504 CCAAATCATCTTCATATGTTCGGGG 60.049 44.000 1.90 0.00 0.00 5.73
516 535 2.061848 TCCAACCAGACTCCCAAATCA 58.938 47.619 0.00 0.00 0.00 2.57
560 579 0.838608 ACAAACCCCGGTAGTGTTGA 59.161 50.000 0.00 0.00 0.00 3.18
581 600 6.448369 AAATCCTTTCCATATGTCCGGATA 57.552 37.500 7.81 4.93 0.00 2.59
606 625 1.819229 CATCTCCGACCAGGGACAG 59.181 63.158 0.00 0.00 41.52 3.51
747 812 3.243771 ACACTGTTGTACTGAGTGGTAGC 60.244 47.826 17.96 0.00 41.23 3.58
793 861 3.565307 TGGTCCATGGAAGGATATTTGC 58.435 45.455 18.20 0.00 40.42 3.68
875 949 1.228215 TATGGGTCCATGCATGCCG 60.228 57.895 21.69 8.89 37.82 5.69
907 982 3.617143 GACAGGTAACCGGGCCCAC 62.617 68.421 24.92 12.52 37.17 4.61
934 1010 2.345991 GTGGCGCAAGGACCAGTA 59.654 61.111 10.83 0.00 36.38 2.74
1001 1077 3.324846 AGCAGATGTGTTGGTCTGAGTTA 59.675 43.478 6.56 0.00 43.50 2.24
1101 1397 3.461773 CGACGTCCCTCCCATGCT 61.462 66.667 10.58 0.00 0.00 3.79
1306 1635 1.352352 CCTTCTTCTTGAGGCCCTTCA 59.648 52.381 0.00 0.00 0.00 3.02
1421 1762 3.958147 AACACGCATGCTCTCCCCG 62.958 63.158 17.13 0.00 0.00 5.73
1451 1792 1.302431 CACGTGGAAGGCATGACCA 60.302 57.895 7.95 0.00 43.14 4.02
1454 1795 1.375908 GAGCACGTGGAAGGCATGA 60.376 57.895 18.88 0.00 0.00 3.07
1469 1810 2.699809 CAAGCGTCGATGCAGAGC 59.300 61.111 30.02 9.70 37.31 4.09
1618 1971 2.449518 TGCTCTCCCCACCACCAA 60.450 61.111 0.00 0.00 0.00 3.67
1631 1984 2.742053 TGATTAAGGCAAGAACGTGCTC 59.258 45.455 0.00 0.00 44.31 4.26
1658 2012 7.931948 AGGAAAAGAGAACAGACGAAGAATAAA 59.068 33.333 0.00 0.00 0.00 1.40
1665 2019 3.641906 AGGAGGAAAAGAGAACAGACGAA 59.358 43.478 0.00 0.00 0.00 3.85
1668 2022 4.344359 ACAGGAGGAAAAGAGAACAGAC 57.656 45.455 0.00 0.00 0.00 3.51
1687 2041 7.837202 AATTACATAGCGTAACTAGCAAACA 57.163 32.000 0.00 0.00 42.82 2.83
1767 3856 4.098654 CAGAGGGAGTACAACTCATGTAGG 59.901 50.000 9.15 0.00 46.79 3.18
1768 3857 4.707448 ACAGAGGGAGTACAACTCATGTAG 59.293 45.833 9.15 0.00 46.79 2.74
1769 3858 4.673968 ACAGAGGGAGTACAACTCATGTA 58.326 43.478 9.15 0.00 46.79 2.29
1770 3859 3.511477 ACAGAGGGAGTACAACTCATGT 58.489 45.455 9.15 10.34 46.79 3.21
1771 3860 5.661056 TTACAGAGGGAGTACAACTCATG 57.339 43.478 9.15 9.90 46.79 3.07
1784 3873 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
1800 3889 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
1801 3890 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
1802 3891 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
1803 3892 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
1833 3922 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1834 3923 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
1835 3924 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
1836 3925 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
1837 3926 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1838 3927 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1839 3928 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1840 3929 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1841 3930 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1843 3932 9.294614 CTAAGTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
1844 3933 8.275040 ACTAAGTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
1845 3934 7.122048 ACTAAGTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
1846 3935 6.485171 ACTAAGTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
1847 3936 6.067217 ACTAAGTACTCCCTCCGTAAACTA 57.933 41.667 0.00 0.00 0.00 2.24
1848 3937 4.928263 ACTAAGTACTCCCTCCGTAAACT 58.072 43.478 0.00 0.00 0.00 2.66
1849 3938 5.651387 AACTAAGTACTCCCTCCGTAAAC 57.349 43.478 0.00 0.00 0.00 2.01
1850 3939 6.948309 ACTTAACTAAGTACTCCCTCCGTAAA 59.052 38.462 0.00 0.00 44.18 2.01
1851 3940 6.485171 ACTTAACTAAGTACTCCCTCCGTAA 58.515 40.000 0.00 0.00 44.18 3.18
1852 3941 6.067217 ACTTAACTAAGTACTCCCTCCGTA 57.933 41.667 0.00 0.00 44.18 4.02
1853 3942 4.928263 ACTTAACTAAGTACTCCCTCCGT 58.072 43.478 0.00 0.00 44.18 4.69
1854 3943 6.352516 TCTACTTAACTAAGTACTCCCTCCG 58.647 44.000 0.00 0.00 44.18 4.63
1855 3944 7.345691 ACTCTACTTAACTAAGTACTCCCTCC 58.654 42.308 0.00 0.00 44.18 4.30
1856 3945 8.676401 CAACTCTACTTAACTAAGTACTCCCTC 58.324 40.741 0.00 0.00 44.18 4.30
1857 3946 8.169393 ACAACTCTACTTAACTAAGTACTCCCT 58.831 37.037 0.00 0.00 44.18 4.20
1858 3947 8.347004 ACAACTCTACTTAACTAAGTACTCCC 57.653 38.462 0.00 0.00 44.18 4.30
1860 3949 9.986833 GCTACAACTCTACTTAACTAAGTACTC 57.013 37.037 0.00 0.00 44.18 2.59
1861 3950 9.512588 TGCTACAACTCTACTTAACTAAGTACT 57.487 33.333 5.42 0.00 44.18 2.73
1922 6710 5.239963 CGACCCAATTACCAAACAAAGTAGT 59.760 40.000 0.00 0.00 0.00 2.73
2137 7462 1.171308 GATTGCTGCCACTCACACAT 58.829 50.000 0.00 0.00 0.00 3.21
2158 7483 7.588143 AACAAAACAAATTGATGACGACAAA 57.412 28.000 0.00 0.00 34.38 2.83
2198 7523 9.040939 ACTAAAAACTTAATTGGTTGCATGTTC 57.959 29.630 0.00 0.00 0.00 3.18
2261 7745 5.104610 ACCAGTCGAGTTGGTATCTAGTCTA 60.105 44.000 17.58 0.00 46.80 2.59
2274 7758 2.232452 CTCAATCTCCACCAGTCGAGTT 59.768 50.000 0.00 0.00 0.00 3.01
2324 8363 4.004314 TCGTTCAACAACACAGGAAAAGA 58.996 39.130 0.00 0.00 32.14 2.52
2359 8399 9.586435 CCTATCAATTTTTGGAAAATGTCTACC 57.414 33.333 0.00 0.00 29.68 3.18
2361 8401 8.811017 TGCCTATCAATTTTTGGAAAATGTCTA 58.189 29.630 0.00 0.00 29.68 2.59
2403 8443 0.978667 TATGGTGACCGGGCAGCTAA 60.979 55.000 37.39 23.64 37.20 3.09
2425 8465 9.268282 GTGGGGATGAATCTCTTAGGTATATAA 57.732 37.037 0.00 0.00 0.00 0.98
2426 8466 8.633724 AGTGGGGATGAATCTCTTAGGTATATA 58.366 37.037 0.00 0.00 0.00 0.86
2428 8468 6.875469 AGTGGGGATGAATCTCTTAGGTATA 58.125 40.000 0.00 0.00 0.00 1.47
2429 8469 5.731924 AGTGGGGATGAATCTCTTAGGTAT 58.268 41.667 0.00 0.00 0.00 2.73
2431 8471 4.014273 AGTGGGGATGAATCTCTTAGGT 57.986 45.455 0.00 0.00 0.00 3.08
2432 8472 5.188751 GGATAGTGGGGATGAATCTCTTAGG 59.811 48.000 0.00 0.00 0.00 2.69
2433 8473 6.022315 AGGATAGTGGGGATGAATCTCTTAG 58.978 44.000 0.00 0.00 0.00 2.18
2434 8474 5.982391 AGGATAGTGGGGATGAATCTCTTA 58.018 41.667 0.00 0.00 0.00 2.10
2435 8475 4.837218 AGGATAGTGGGGATGAATCTCTT 58.163 43.478 0.00 0.00 0.00 2.85
2436 8476 4.500389 AGGATAGTGGGGATGAATCTCT 57.500 45.455 0.00 0.00 0.00 3.10
2437 8477 6.882768 AATAGGATAGTGGGGATGAATCTC 57.117 41.667 0.00 0.00 0.00 2.75
2439 8479 8.997734 AGATAAATAGGATAGTGGGGATGAATC 58.002 37.037 0.00 0.00 0.00 2.52
2441 8481 8.605947 CAAGATAAATAGGATAGTGGGGATGAA 58.394 37.037 0.00 0.00 0.00 2.57
2442 8482 7.961431 TCAAGATAAATAGGATAGTGGGGATGA 59.039 37.037 0.00 0.00 0.00 2.92
2443 8483 8.043710 GTCAAGATAAATAGGATAGTGGGGATG 58.956 40.741 0.00 0.00 0.00 3.51
2446 8486 7.316393 TGTCAAGATAAATAGGATAGTGGGG 57.684 40.000 0.00 0.00 0.00 4.96
2459 8499 8.544622 TGTGGATAGGTTACATGTCAAGATAAA 58.455 33.333 0.00 0.00 0.00 1.40
2461 8501 7.669089 TGTGGATAGGTTACATGTCAAGATA 57.331 36.000 0.00 0.00 0.00 1.98
2462 8502 6.560003 TGTGGATAGGTTACATGTCAAGAT 57.440 37.500 0.00 0.00 0.00 2.40
2463 8503 6.156083 TGATGTGGATAGGTTACATGTCAAGA 59.844 38.462 0.00 0.00 35.35 3.02
2464 8504 6.348498 TGATGTGGATAGGTTACATGTCAAG 58.652 40.000 0.00 0.00 35.35 3.02
2465 8505 6.306643 TGATGTGGATAGGTTACATGTCAA 57.693 37.500 0.00 0.00 35.35 3.18
2467 8507 6.524734 TGATGATGTGGATAGGTTACATGTC 58.475 40.000 0.00 0.00 35.35 3.06
2469 8509 7.991084 ATTGATGATGTGGATAGGTTACATG 57.009 36.000 0.00 0.00 35.35 3.21
2470 8510 9.730705 CTAATTGATGATGTGGATAGGTTACAT 57.269 33.333 0.00 0.00 37.72 2.29
2471 8511 8.156820 CCTAATTGATGATGTGGATAGGTTACA 58.843 37.037 0.00 0.00 0.00 2.41
2472 8512 8.157476 ACCTAATTGATGATGTGGATAGGTTAC 58.843 37.037 0.00 0.00 38.94 2.50
2473 8513 8.275187 ACCTAATTGATGATGTGGATAGGTTA 57.725 34.615 0.00 0.00 38.94 2.85
2474 8514 7.154191 ACCTAATTGATGATGTGGATAGGTT 57.846 36.000 0.00 0.00 38.94 3.50
2476 8516 6.176183 GGACCTAATTGATGATGTGGATAGG 58.824 44.000 0.00 0.00 35.80 2.57
2477 8517 6.772605 TGGACCTAATTGATGATGTGGATAG 58.227 40.000 0.00 0.00 0.00 2.08
2478 8518 6.762077 TGGACCTAATTGATGATGTGGATA 57.238 37.500 0.00 0.00 0.00 2.59
2479 8519 5.651612 TGGACCTAATTGATGATGTGGAT 57.348 39.130 0.00 0.00 0.00 3.41
2480 8520 5.132480 TGATGGACCTAATTGATGATGTGGA 59.868 40.000 0.00 0.00 0.00 4.02
2481 8521 5.379187 TGATGGACCTAATTGATGATGTGG 58.621 41.667 0.00 0.00 0.00 4.17
2482 8522 7.520451 AATGATGGACCTAATTGATGATGTG 57.480 36.000 0.00 0.00 0.00 3.21
2483 8523 9.645128 TTAAATGATGGACCTAATTGATGATGT 57.355 29.630 0.00 0.00 0.00 3.06
2494 8534 9.020731 GGAAAGAGTTTTTAAATGATGGACCTA 57.979 33.333 0.00 0.00 0.00 3.08
2496 8536 7.097192 GGGAAAGAGTTTTTAAATGATGGACC 58.903 38.462 0.00 0.00 0.00 4.46
2498 8538 7.508977 AGTGGGAAAGAGTTTTTAAATGATGGA 59.491 33.333 0.00 0.00 0.00 3.41
2503 8543 9.678941 GAGTTAGTGGGAAAGAGTTTTTAAATG 57.321 33.333 0.00 0.00 0.00 2.32
2504 8544 9.642343 AGAGTTAGTGGGAAAGAGTTTTTAAAT 57.358 29.630 0.00 0.00 0.00 1.40
2505 8545 9.470399 AAGAGTTAGTGGGAAAGAGTTTTTAAA 57.530 29.630 0.00 0.00 0.00 1.52
2506 8546 9.117183 GAAGAGTTAGTGGGAAAGAGTTTTTAA 57.883 33.333 0.00 0.00 0.00 1.52
2507 8547 8.269317 TGAAGAGTTAGTGGGAAAGAGTTTTTA 58.731 33.333 0.00 0.00 0.00 1.52
2508 8548 7.116736 TGAAGAGTTAGTGGGAAAGAGTTTTT 58.883 34.615 0.00 0.00 0.00 1.94
2509 8549 6.659824 TGAAGAGTTAGTGGGAAAGAGTTTT 58.340 36.000 0.00 0.00 0.00 2.43
2510 8550 6.248569 TGAAGAGTTAGTGGGAAAGAGTTT 57.751 37.500 0.00 0.00 0.00 2.66
2511 8551 5.888982 TGAAGAGTTAGTGGGAAAGAGTT 57.111 39.130 0.00 0.00 0.00 3.01
2512 8552 5.799213 CATGAAGAGTTAGTGGGAAAGAGT 58.201 41.667 0.00 0.00 0.00 3.24
2513 8553 4.633565 GCATGAAGAGTTAGTGGGAAAGAG 59.366 45.833 0.00 0.00 0.00 2.85
2514 8554 4.041567 TGCATGAAGAGTTAGTGGGAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
2515 8555 4.154918 GTGCATGAAGAGTTAGTGGGAAAG 59.845 45.833 0.00 0.00 0.00 2.62
2516 8556 4.072131 GTGCATGAAGAGTTAGTGGGAAA 58.928 43.478 0.00 0.00 0.00 3.13
2517 8557 3.072330 TGTGCATGAAGAGTTAGTGGGAA 59.928 43.478 0.00 0.00 0.00 3.97
2518 8558 2.637382 TGTGCATGAAGAGTTAGTGGGA 59.363 45.455 0.00 0.00 0.00 4.37
2519 8559 3.057969 TGTGCATGAAGAGTTAGTGGG 57.942 47.619 0.00 0.00 0.00 4.61
2520 8560 3.181503 GCATGTGCATGAAGAGTTAGTGG 60.182 47.826 15.53 0.00 41.20 4.00
2522 8562 3.012518 GGCATGTGCATGAAGAGTTAGT 58.987 45.455 15.53 0.00 44.36 2.24
2523 8563 2.357009 GGGCATGTGCATGAAGAGTTAG 59.643 50.000 15.53 0.00 44.36 2.34
2524 8564 2.368439 GGGCATGTGCATGAAGAGTTA 58.632 47.619 15.53 0.00 44.36 2.24
2525 8565 1.180029 GGGCATGTGCATGAAGAGTT 58.820 50.000 15.53 0.00 44.36 3.01
2527 8567 1.389609 GGGGGCATGTGCATGAAGAG 61.390 60.000 15.53 0.00 44.36 2.85
2528 8568 1.380246 GGGGGCATGTGCATGAAGA 60.380 57.895 15.53 0.00 44.36 2.87
2529 8569 1.380785 AGGGGGCATGTGCATGAAG 60.381 57.895 15.53 0.00 44.36 3.02
2531 8571 0.987613 TAGAGGGGGCATGTGCATGA 60.988 55.000 15.53 0.00 44.36 3.07
2533 8573 1.842007 CTAGAGGGGGCATGTGCAT 59.158 57.895 7.36 0.00 44.36 3.96
2534 8574 3.047807 GCTAGAGGGGGCATGTGCA 62.048 63.158 7.36 0.00 44.36 4.57
2535 8575 2.203266 GCTAGAGGGGGCATGTGC 60.203 66.667 0.00 0.00 41.14 4.57
2539 8579 1.298953 TGAAAAGCTAGAGGGGGCAT 58.701 50.000 0.00 0.00 0.00 4.40
2540 8580 1.064463 CATGAAAAGCTAGAGGGGGCA 60.064 52.381 0.00 0.00 0.00 5.36
2541 8581 1.685148 CATGAAAAGCTAGAGGGGGC 58.315 55.000 0.00 0.00 0.00 5.80
2543 8583 1.752084 GCCCATGAAAAGCTAGAGGGG 60.752 57.143 0.00 6.31 35.36 4.79
2546 8586 2.034305 GCATGCCCATGAAAAGCTAGAG 59.966 50.000 6.36 0.00 41.20 2.43
2547 8587 2.026641 GCATGCCCATGAAAAGCTAGA 58.973 47.619 6.36 0.00 41.20 2.43
2550 8590 0.978151 TTGCATGCCCATGAAAAGCT 59.022 45.000 16.68 0.00 41.20 3.74
2551 8591 1.081094 GTTGCATGCCCATGAAAAGC 58.919 50.000 16.68 0.00 38.04 3.51
2552 8592 2.754946 AGTTGCATGCCCATGAAAAG 57.245 45.000 16.68 0.00 38.04 2.27
2553 8593 4.222366 TGATAAGTTGCATGCCCATGAAAA 59.778 37.500 16.68 0.00 38.04 2.29
2554 8594 3.768215 TGATAAGTTGCATGCCCATGAAA 59.232 39.130 16.68 5.03 41.20 2.69
2555 8595 3.130869 GTGATAAGTTGCATGCCCATGAA 59.869 43.478 16.68 0.00 41.20 2.57
2556 8596 2.689471 GTGATAAGTTGCATGCCCATGA 59.311 45.455 16.68 0.00 41.20 3.07
2558 8598 2.737544 TGTGATAAGTTGCATGCCCAT 58.262 42.857 16.68 1.07 0.00 4.00
2559 8599 2.212812 TGTGATAAGTTGCATGCCCA 57.787 45.000 16.68 0.00 0.00 5.36
2560 8600 3.591196 TTTGTGATAAGTTGCATGCCC 57.409 42.857 16.68 5.73 0.00 5.36
2563 8603 8.706492 AATGGTTATTTGTGATAAGTTGCATG 57.294 30.769 0.00 0.00 0.00 4.06
2565 8605 7.973388 GCTAATGGTTATTTGTGATAAGTTGCA 59.027 33.333 0.00 0.00 0.00 4.08
2595 8635 3.315191 GGCTACTTGAGAGTGCACAAAAA 59.685 43.478 21.04 6.84 36.60 1.94
2596 8636 2.878406 GGCTACTTGAGAGTGCACAAAA 59.122 45.455 21.04 6.49 36.60 2.44
2597 8637 2.158827 TGGCTACTTGAGAGTGCACAAA 60.159 45.455 21.04 6.85 36.60 2.83
2598 8638 1.416030 TGGCTACTTGAGAGTGCACAA 59.584 47.619 21.04 3.22 36.60 3.33
2599 8639 1.047801 TGGCTACTTGAGAGTGCACA 58.952 50.000 21.04 0.00 36.60 4.57
2600 8640 1.433534 GTGGCTACTTGAGAGTGCAC 58.566 55.000 9.40 9.40 36.60 4.57
2601 8641 0.038251 CGTGGCTACTTGAGAGTGCA 60.038 55.000 0.00 0.00 36.60 4.57
2603 8643 0.244994 AGCGTGGCTACTTGAGAGTG 59.755 55.000 0.00 0.00 36.99 3.51
2605 8645 3.067461 AGAATAGCGTGGCTACTTGAGAG 59.933 47.826 0.00 0.00 44.24 3.20
2606 8646 3.024547 AGAATAGCGTGGCTACTTGAGA 58.975 45.455 0.00 0.00 44.24 3.27
2607 8647 3.444703 AGAATAGCGTGGCTACTTGAG 57.555 47.619 0.00 0.00 44.24 3.02
2608 8648 3.318275 CCTAGAATAGCGTGGCTACTTGA 59.682 47.826 0.00 0.00 44.24 3.02
2609 8649 3.068307 ACCTAGAATAGCGTGGCTACTTG 59.932 47.826 0.00 0.00 44.24 3.16
2610 8650 3.297736 ACCTAGAATAGCGTGGCTACTT 58.702 45.455 0.00 0.00 44.24 2.24
2613 8653 3.958798 AGAAACCTAGAATAGCGTGGCTA 59.041 43.478 0.00 0.00 45.55 3.93
2614 8654 2.766828 AGAAACCTAGAATAGCGTGGCT 59.233 45.455 0.00 0.00 43.41 4.75
2615 8655 3.124560 GAGAAACCTAGAATAGCGTGGC 58.875 50.000 0.00 0.00 37.37 5.01
2617 8657 5.411781 ACAAGAGAAACCTAGAATAGCGTG 58.588 41.667 0.00 0.00 37.37 5.34
2619 8659 5.869888 ACAACAAGAGAAACCTAGAATAGCG 59.130 40.000 0.00 0.00 37.37 4.26
2634 8674 9.175060 CGTCAAGACATATATAGACAACAAGAG 57.825 37.037 0.72 0.00 0.00 2.85
2635 8675 8.135529 CCGTCAAGACATATATAGACAACAAGA 58.864 37.037 0.72 0.00 0.00 3.02
2636 8676 7.096023 GCCGTCAAGACATATATAGACAACAAG 60.096 40.741 0.72 0.00 0.00 3.16
2638 8678 6.183360 TGCCGTCAAGACATATATAGACAACA 60.183 38.462 0.72 0.00 0.00 3.33
2640 8680 6.399639 TGCCGTCAAGACATATATAGACAA 57.600 37.500 0.72 0.00 0.00 3.18
2641 8681 6.590234 ATGCCGTCAAGACATATATAGACA 57.410 37.500 0.72 0.00 0.00 3.41
2645 8685 8.360390 GGATCATATGCCGTCAAGACATATATA 58.640 37.037 0.00 0.00 35.70 0.86
2646 8686 7.070447 AGGATCATATGCCGTCAAGACATATAT 59.930 37.037 0.00 0.00 35.70 0.86
2647 8687 6.381133 AGGATCATATGCCGTCAAGACATATA 59.619 38.462 0.00 0.00 35.70 0.86
2648 8688 5.188555 AGGATCATATGCCGTCAAGACATAT 59.811 40.000 0.00 0.00 37.45 1.78
2650 8690 3.326006 AGGATCATATGCCGTCAAGACAT 59.674 43.478 0.00 0.00 0.00 3.06
2651 8691 2.700371 AGGATCATATGCCGTCAAGACA 59.300 45.455 0.00 0.00 0.00 3.41
2652 8692 3.321497 GAGGATCATATGCCGTCAAGAC 58.679 50.000 0.00 0.00 33.17 3.01
2653 8693 2.300152 GGAGGATCATATGCCGTCAAGA 59.700 50.000 14.85 0.00 36.25 3.02
2654 8694 2.613977 GGGAGGATCATATGCCGTCAAG 60.614 54.545 14.85 0.00 36.25 3.02
2655 8695 1.347707 GGGAGGATCATATGCCGTCAA 59.652 52.381 14.85 0.00 36.25 3.18
2656 8696 0.976641 GGGAGGATCATATGCCGTCA 59.023 55.000 14.85 0.00 36.25 4.35
2657 8697 0.250513 GGGGAGGATCATATGCCGTC 59.749 60.000 0.00 3.80 36.25 4.79
2658 8698 0.473694 TGGGGAGGATCATATGCCGT 60.474 55.000 0.00 0.00 36.25 5.68
2659 8699 0.692476 TTGGGGAGGATCATATGCCG 59.308 55.000 0.00 0.00 36.25 5.69
2660 8700 2.978156 TTTGGGGAGGATCATATGCC 57.022 50.000 0.00 0.00 36.25 4.40
2661 8701 3.760684 GACATTTGGGGAGGATCATATGC 59.239 47.826 0.00 0.00 36.25 3.14
2662 8702 4.202599 TGGACATTTGGGGAGGATCATATG 60.203 45.833 0.00 0.00 36.25 1.78
2663 8703 3.989558 TGGACATTTGGGGAGGATCATAT 59.010 43.478 0.00 0.00 36.25 1.78
2664 8704 3.402353 TGGACATTTGGGGAGGATCATA 58.598 45.455 0.00 0.00 36.25 2.15
2665 8705 2.216881 TGGACATTTGGGGAGGATCAT 58.783 47.619 0.00 0.00 36.25 2.45
2666 8706 1.679981 TGGACATTTGGGGAGGATCA 58.320 50.000 0.00 0.00 36.25 2.92
2667 8707 2.291540 TGTTGGACATTTGGGGAGGATC 60.292 50.000 0.00 0.00 0.00 3.36
2668 8708 1.715931 TGTTGGACATTTGGGGAGGAT 59.284 47.619 0.00 0.00 0.00 3.24
2669 8709 1.153539 TGTTGGACATTTGGGGAGGA 58.846 50.000 0.00 0.00 0.00 3.71
2670 8710 1.256812 GTGTTGGACATTTGGGGAGG 58.743 55.000 0.00 0.00 0.00 4.30
2672 8712 0.474614 TCGTGTTGGACATTTGGGGA 59.525 50.000 0.00 0.00 0.00 4.81
2673 8713 0.881118 CTCGTGTTGGACATTTGGGG 59.119 55.000 0.00 0.00 0.00 4.96
2674 8714 1.535462 GACTCGTGTTGGACATTTGGG 59.465 52.381 0.00 0.00 0.00 4.12
2675 8715 1.535462 GGACTCGTGTTGGACATTTGG 59.465 52.381 0.00 0.00 0.00 3.28
2676 8716 1.535462 GGGACTCGTGTTGGACATTTG 59.465 52.381 0.00 0.00 0.00 2.32
2677 8717 1.544759 GGGGACTCGTGTTGGACATTT 60.545 52.381 0.00 0.00 0.00 2.32
2678 8718 0.036306 GGGGACTCGTGTTGGACATT 59.964 55.000 0.00 0.00 0.00 2.71
2679 8719 1.677552 GGGGACTCGTGTTGGACAT 59.322 57.895 0.00 0.00 0.00 3.06
2680 8720 2.863346 CGGGGACTCGTGTTGGACA 61.863 63.158 0.00 0.00 0.00 4.02
2681 8721 2.048503 CGGGGACTCGTGTTGGAC 60.049 66.667 0.00 0.00 0.00 4.02
2684 8724 0.531090 TTGAACGGGGACTCGTGTTG 60.531 55.000 0.00 0.00 43.07 3.33
2685 8725 0.178533 TTTGAACGGGGACTCGTGTT 59.821 50.000 0.00 0.00 43.07 3.32
2688 8728 0.395312 ATGTTTGAACGGGGACTCGT 59.605 50.000 0.00 0.00 46.08 4.18
2691 8731 1.960689 CCAAATGTTTGAACGGGGACT 59.039 47.619 7.04 0.00 40.55 3.85
2692 8732 1.684450 ACCAAATGTTTGAACGGGGAC 59.316 47.619 7.04 0.00 40.55 4.46
2693 8733 2.074729 ACCAAATGTTTGAACGGGGA 57.925 45.000 7.04 0.00 40.55 4.81
2694 8734 2.900716 AACCAAATGTTTGAACGGGG 57.099 45.000 7.04 0.00 40.55 5.73
2695 8735 4.277423 AGTCTAACCAAATGTTTGAACGGG 59.723 41.667 7.04 0.00 39.77 5.28
2696 8736 5.432885 AGTCTAACCAAATGTTTGAACGG 57.567 39.130 7.04 0.00 39.77 4.44
2698 8738 6.413818 CGTGAAGTCTAACCAAATGTTTGAAC 59.586 38.462 7.04 0.00 39.77 3.18
2700 8740 5.587043 ACGTGAAGTCTAACCAAATGTTTGA 59.413 36.000 7.04 0.00 40.55 2.69
2702 8742 5.355910 ACACGTGAAGTCTAACCAAATGTTT 59.644 36.000 25.01 0.00 38.42 2.83
2703 8743 4.879545 ACACGTGAAGTCTAACCAAATGTT 59.120 37.500 25.01 0.00 41.11 2.71
2704 8744 4.448210 ACACGTGAAGTCTAACCAAATGT 58.552 39.130 25.01 0.00 0.00 2.71
2705 8745 5.418310 AACACGTGAAGTCTAACCAAATG 57.582 39.130 25.01 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.