Multiple sequence alignment - TraesCS7B01G479400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G479400 chr7B 100.000 4863 0 0 1 4863 733883849 733888711 0.000000e+00 8981.0
1 TraesCS7B01G479400 chr7B 99.653 2018 7 0 1801 3818 733861011 733863028 0.000000e+00 3688.0
2 TraesCS7B01G479400 chr7B 99.045 1676 16 0 1 1676 733859344 733861019 0.000000e+00 3007.0
3 TraesCS7B01G479400 chr7B 91.860 2027 131 17 1803 3818 733925871 733927874 0.000000e+00 2798.0
4 TraesCS7B01G479400 chr7B 96.416 1674 56 3 1 1674 733924206 733925875 0.000000e+00 2756.0
5 TraesCS7B01G479400 chr7B 99.525 1053 5 0 3811 4863 733863058 733864110 0.000000e+00 1917.0
6 TraesCS7B01G479400 chr7B 90.883 1053 96 0 3811 4863 733927904 733928956 0.000000e+00 1413.0
7 TraesCS7B01G479400 chr7B 80.157 1653 281 33 1876 3506 733811894 733813521 0.000000e+00 1192.0
8 TraesCS7B01G479400 chr7B 75.338 1257 270 28 1801 3034 733759864 733761103 7.060000e-158 568.0
9 TraesCS7B01G479400 chr7B 70.905 1691 376 77 1878 3475 890357 888690 1.710000e-74 291.0
10 TraesCS7B01G479400 chr7B 98.485 132 1 1 1673 1804 336361088 336360958 1.050000e-56 231.0
11 TraesCS7B01G479400 chr7A 92.315 2030 120 15 1803 3818 727229389 727231396 0.000000e+00 2852.0
12 TraesCS7B01G479400 chr7A 91.994 1249 72 11 452 1674 727228147 727229393 0.000000e+00 1727.0
13 TraesCS7B01G479400 chr7A 92.979 1054 72 2 3811 4863 727231426 727232478 0.000000e+00 1535.0
14 TraesCS7B01G479400 chr7A 78.241 1728 327 29 1801 3505 726769663 726767962 0.000000e+00 1062.0
15 TraesCS7B01G479400 chr7A 74.731 1670 350 48 1876 3505 726685476 726683839 0.000000e+00 680.0
16 TraesCS7B01G479400 chr7A 74.759 1660 342 56 1881 3505 726814162 726812545 0.000000e+00 673.0
17 TraesCS7B01G479400 chr7A 100.000 129 0 0 1677 1805 100556042 100555914 6.290000e-59 239.0
18 TraesCS7B01G479400 chr7A 75.000 428 77 22 1881 2284 727214608 727214187 2.330000e-38 171.0
19 TraesCS7B01G479400 chr7A 93.750 112 7 0 345 456 685837730 685837619 8.370000e-38 169.0
20 TraesCS7B01G479400 chr7D 80.121 1655 278 33 1876 3506 631425104 631426731 0.000000e+00 1186.0
21 TraesCS7B01G479400 chr7D 73.534 699 155 23 999 1676 638670921 638670232 6.290000e-59 239.0
22 TraesCS7B01G479400 chr6D 73.174 1711 354 70 1801 3445 469051275 469052946 2.010000e-143 520.0
23 TraesCS7B01G479400 chr6D 72.823 1711 364 69 1802 3445 468941590 468943266 1.570000e-134 490.0
24 TraesCS7B01G479400 chr6D 90.566 159 12 3 77 235 8343888 8343733 1.770000e-49 207.0
25 TraesCS7B01G479400 chr6D 74.633 477 94 17 1801 2256 468255362 468254892 8.310000e-43 185.0
26 TraesCS7B01G479400 chr6D 89.683 126 10 2 330 454 307291461 307291338 1.810000e-34 158.0
27 TraesCS7B01G479400 chr2D 100.000 125 0 0 1677 1801 405174340 405174464 1.050000e-56 231.0
28 TraesCS7B01G479400 chr2D 93.636 110 7 0 346 455 326217584 326217475 1.080000e-36 165.0
29 TraesCS7B01G479400 chr1D 99.219 128 1 0 1674 1801 72884321 72884448 1.050000e-56 231.0
30 TraesCS7B01G479400 chr1D 100.000 124 0 0 1677 1800 481558089 481558212 3.790000e-56 230.0
31 TraesCS7B01G479400 chr5B 99.213 127 1 0 1676 1802 636898582 636898708 3.790000e-56 230.0
32 TraesCS7B01G479400 chr5B 89.506 162 16 1 77 238 276825470 276825630 2.290000e-48 204.0
33 TraesCS7B01G479400 chr5B 90.141 71 7 0 4 74 488950336 488950266 5.180000e-15 93.5
34 TraesCS7B01G479400 chr4A 98.473 131 1 1 1677 1806 8592681 8592551 3.790000e-56 230.0
35 TraesCS7B01G479400 chr2B 97.761 134 2 1 1677 1809 24197273 24197140 3.790000e-56 230.0
36 TraesCS7B01G479400 chr2B 97.674 129 2 1 1672 1800 49318572 49318699 2.280000e-53 220.0
37 TraesCS7B01G479400 chr4B 90.625 160 15 0 77 236 652990489 652990330 3.810000e-51 213.0
38 TraesCS7B01G479400 chr3B 90.566 159 13 2 82 240 5607144 5606988 4.930000e-50 209.0
39 TraesCS7B01G479400 chr3B 90.909 154 13 1 77 230 471474158 471474310 6.380000e-49 206.0
40 TraesCS7B01G479400 chr3B 87.079 178 17 5 77 248 821406720 821406543 3.840000e-46 196.0
41 TraesCS7B01G479400 chr6B 89.571 163 15 2 77 237 260601154 260601316 6.380000e-49 206.0
42 TraesCS7B01G479400 chr5A 95.370 108 5 0 346 453 134983942 134984049 6.470000e-39 172.0
43 TraesCS7B01G479400 chr5A 90.625 128 9 2 334 461 582384411 582384287 3.010000e-37 167.0
44 TraesCS7B01G479400 chr5A 89.600 125 12 1 345 469 346203973 346203850 1.810000e-34 158.0
45 TraesCS7B01G479400 chr2A 90.984 122 11 0 340 461 647957925 647958046 1.080000e-36 165.0
46 TraesCS7B01G479400 chrUn 91.549 71 6 0 4 74 71742611 71742541 1.110000e-16 99.0
47 TraesCS7B01G479400 chrUn 89.189 74 8 0 1 74 378829530 378829603 5.180000e-15 93.5
48 TraesCS7B01G479400 chr1B 90.541 74 7 0 1 74 647543637 647543710 1.110000e-16 99.0
49 TraesCS7B01G479400 chr3D 90.141 71 7 0 4 74 559447120 559447050 5.180000e-15 93.5
50 TraesCS7B01G479400 chr3D 90.141 71 7 0 4 74 559473780 559473710 5.180000e-15 93.5
51 TraesCS7B01G479400 chr6A 88.889 72 7 1 4 75 29120299 29120229 2.410000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G479400 chr7B 733883849 733888711 4862 False 8981.000000 8981 100.000000 1 4863 1 chr7B.!!$F3 4862
1 TraesCS7B01G479400 chr7B 733859344 733864110 4766 False 2870.666667 3688 99.407667 1 4863 3 chr7B.!!$F4 4862
2 TraesCS7B01G479400 chr7B 733924206 733928956 4750 False 2322.333333 2798 93.053000 1 4863 3 chr7B.!!$F5 4862
3 TraesCS7B01G479400 chr7B 733811894 733813521 1627 False 1192.000000 1192 80.157000 1876 3506 1 chr7B.!!$F2 1630
4 TraesCS7B01G479400 chr7B 733759864 733761103 1239 False 568.000000 568 75.338000 1801 3034 1 chr7B.!!$F1 1233
5 TraesCS7B01G479400 chr7B 888690 890357 1667 True 291.000000 291 70.905000 1878 3475 1 chr7B.!!$R1 1597
6 TraesCS7B01G479400 chr7A 727228147 727232478 4331 False 2038.000000 2852 92.429333 452 4863 3 chr7A.!!$F1 4411
7 TraesCS7B01G479400 chr7A 726767962 726769663 1701 True 1062.000000 1062 78.241000 1801 3505 1 chr7A.!!$R4 1704
8 TraesCS7B01G479400 chr7A 726683839 726685476 1637 True 680.000000 680 74.731000 1876 3505 1 chr7A.!!$R3 1629
9 TraesCS7B01G479400 chr7A 726812545 726814162 1617 True 673.000000 673 74.759000 1881 3505 1 chr7A.!!$R5 1624
10 TraesCS7B01G479400 chr7D 631425104 631426731 1627 False 1186.000000 1186 80.121000 1876 3506 1 chr7D.!!$F1 1630
11 TraesCS7B01G479400 chr7D 638670232 638670921 689 True 239.000000 239 73.534000 999 1676 1 chr7D.!!$R1 677
12 TraesCS7B01G479400 chr6D 469051275 469052946 1671 False 520.000000 520 73.174000 1801 3445 1 chr6D.!!$F2 1644
13 TraesCS7B01G479400 chr6D 468941590 468943266 1676 False 490.000000 490 72.823000 1802 3445 1 chr6D.!!$F1 1643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 878 2.093447 AGATGAACAGGAATCGTCCCAC 60.093 50.0 0.00 0.00 46.30 4.61 F
1084 1111 0.673333 CCTTGTGCAGGCGTATGTCA 60.673 55.0 0.00 0.00 35.13 3.58 F
1706 1751 0.109086 CTCTGACGTACTGCAGGGTG 60.109 60.0 19.93 9.21 33.05 4.61 F
1770 1815 0.179048 CTGTCAGTGACCCAACTGCA 60.179 55.0 20.43 0.00 45.93 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1732 0.109086 CACCCTGCAGTACGTCAGAG 60.109 60.00 13.81 7.84 32.26 3.35 R
2035 2086 8.420222 TCATTGTTTTCTTCAATTTGGCTAAGA 58.580 29.63 0.00 0.00 33.92 2.10 R
3486 3639 0.631753 TCCCCAAACCAACCTCAACA 59.368 50.00 0.00 0.00 0.00 3.33 R
3962 4152 2.489619 GGCAATGCATAGAGATTGGGGA 60.490 50.00 7.79 0.00 31.38 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
421 422 3.299503 ACAGCCCAATTTGAGTTGTCTT 58.700 40.909 0.00 0.00 0.00 3.01
861 878 2.093447 AGATGAACAGGAATCGTCCCAC 60.093 50.000 0.00 0.00 46.30 4.61
1059 1086 2.171840 ACGGTAGTGAATCTGCTGTCT 58.828 47.619 0.00 0.00 43.10 3.41
1084 1111 0.673333 CCTTGTGCAGGCGTATGTCA 60.673 55.000 0.00 0.00 35.13 3.58
1092 1119 1.375396 GGCGTATGTCACCAGTGCA 60.375 57.895 0.00 0.00 0.00 4.57
1670 1715 5.587443 CAGGATCAATCACTGCACAAGATAA 59.413 40.000 0.00 0.00 0.00 1.75
1684 1729 3.689649 ACAAGATAAATTGTGGACGAGGC 59.310 43.478 0.00 0.00 41.76 4.70
1685 1730 3.914426 AGATAAATTGTGGACGAGGCT 57.086 42.857 0.00 0.00 0.00 4.58
1686 1731 3.798202 AGATAAATTGTGGACGAGGCTC 58.202 45.455 3.87 3.87 0.00 4.70
1687 1732 2.396590 TAAATTGTGGACGAGGCTCC 57.603 50.000 9.32 0.00 0.00 4.70
1688 1733 0.693049 AAATTGTGGACGAGGCTCCT 59.307 50.000 9.32 0.00 0.00 3.69
1689 1734 0.250513 AATTGTGGACGAGGCTCCTC 59.749 55.000 9.32 6.95 39.55 3.71
1690 1735 0.616111 ATTGTGGACGAGGCTCCTCT 60.616 55.000 9.32 1.64 40.69 3.69
1691 1736 1.536073 TTGTGGACGAGGCTCCTCTG 61.536 60.000 9.32 9.55 40.69 3.35
1692 1737 1.679305 GTGGACGAGGCTCCTCTGA 60.679 63.158 9.32 0.00 40.69 3.27
1693 1738 1.679305 TGGACGAGGCTCCTCTGAC 60.679 63.158 9.32 7.69 40.69 3.51
1694 1739 2.766400 GGACGAGGCTCCTCTGACG 61.766 68.421 9.32 4.08 40.69 4.35
1695 1740 2.034376 ACGAGGCTCCTCTGACGT 59.966 61.111 9.32 4.69 40.69 4.34
1696 1741 0.743701 GACGAGGCTCCTCTGACGTA 60.744 60.000 9.32 0.00 40.69 3.57
1697 1742 1.025647 ACGAGGCTCCTCTGACGTAC 61.026 60.000 9.32 0.00 40.69 3.67
1698 1743 0.745128 CGAGGCTCCTCTGACGTACT 60.745 60.000 9.32 0.00 40.69 2.73
1699 1744 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
1700 1745 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
1701 1746 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
1702 1747 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
1703 1748 0.453793 CTCCTCTGACGTACTGCAGG 59.546 60.000 19.93 2.38 33.05 4.85
1704 1749 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
1705 1750 1.251527 CCTCTGACGTACTGCAGGGT 61.252 60.000 19.93 12.80 30.57 4.34
1706 1751 0.109086 CTCTGACGTACTGCAGGGTG 60.109 60.000 19.93 9.21 33.05 4.61
1707 1752 1.738099 CTGACGTACTGCAGGGTGC 60.738 63.158 19.93 0.92 45.29 5.01
1717 1762 4.601794 CAGGGTGCAGTTGGGCCA 62.602 66.667 0.00 0.00 0.00 5.36
1718 1763 4.603535 AGGGTGCAGTTGGGCCAC 62.604 66.667 5.23 1.08 0.00 5.01
1719 1764 4.603535 GGGTGCAGTTGGGCCACT 62.604 66.667 5.23 3.94 0.00 4.00
1720 1765 3.297620 GGTGCAGTTGGGCCACTG 61.298 66.667 23.47 23.47 46.15 3.66
1721 1766 2.203337 GTGCAGTTGGGCCACTGA 60.203 61.111 28.71 16.56 46.29 3.41
1722 1767 2.203337 TGCAGTTGGGCCACTGAC 60.203 61.111 28.71 21.80 46.29 3.51
1723 1768 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
1724 1769 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
1725 1770 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
1726 1771 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
1727 1772 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
1733 1778 4.704833 CACTGACAGGTGGGCCCG 62.705 72.222 19.37 4.81 38.74 6.13
1734 1779 4.954118 ACTGACAGGTGGGCCCGA 62.954 66.667 19.37 3.06 38.74 5.14
1735 1780 3.636231 CTGACAGGTGGGCCCGAA 61.636 66.667 19.37 0.00 38.74 4.30
1736 1781 3.172106 TGACAGGTGGGCCCGAAA 61.172 61.111 19.37 0.00 38.74 3.46
1737 1782 2.359975 GACAGGTGGGCCCGAAAG 60.360 66.667 19.37 10.07 38.74 2.62
1738 1783 4.660938 ACAGGTGGGCCCGAAAGC 62.661 66.667 19.37 9.80 38.74 3.51
1739 1784 4.659172 CAGGTGGGCCCGAAAGCA 62.659 66.667 19.37 0.00 38.74 3.91
1740 1785 3.897122 AGGTGGGCCCGAAAGCAA 61.897 61.111 19.37 0.00 38.74 3.91
1741 1786 3.373565 GGTGGGCCCGAAAGCAAG 61.374 66.667 19.37 0.00 0.00 4.01
1742 1787 2.597510 GTGGGCCCGAAAGCAAGT 60.598 61.111 19.37 0.00 0.00 3.16
1743 1788 2.197324 TGGGCCCGAAAGCAAGTT 59.803 55.556 19.37 0.00 0.00 2.66
1744 1789 2.199652 TGGGCCCGAAAGCAAGTTG 61.200 57.895 19.37 0.00 0.00 3.16
1745 1790 2.650778 GGCCCGAAAGCAAGTTGG 59.349 61.111 4.75 0.00 0.00 3.77
1746 1791 2.049156 GCCCGAAAGCAAGTTGGC 60.049 61.111 4.75 0.00 0.00 4.52
1747 1792 2.650778 CCCGAAAGCAAGTTGGCC 59.349 61.111 4.75 0.00 0.00 5.36
1748 1793 2.650778 CCGAAAGCAAGTTGGCCC 59.349 61.111 0.00 0.00 0.00 5.80
1749 1794 2.199652 CCGAAAGCAAGTTGGCCCA 61.200 57.895 0.00 0.00 0.00 5.36
1750 1795 1.007387 CGAAAGCAAGTTGGCCCAC 60.007 57.895 0.00 0.00 0.00 4.61
1751 1796 1.367471 GAAAGCAAGTTGGCCCACC 59.633 57.895 2.72 0.00 0.00 4.61
1752 1797 1.075301 AAAGCAAGTTGGCCCACCT 60.075 52.632 2.72 0.00 36.63 4.00
1753 1798 1.402107 AAAGCAAGTTGGCCCACCTG 61.402 55.000 2.72 1.84 36.63 4.00
1754 1799 2.521708 GCAAGTTGGCCCACCTGT 60.522 61.111 2.72 0.00 36.63 4.00
1755 1800 2.564721 GCAAGTTGGCCCACCTGTC 61.565 63.158 2.72 0.00 36.63 3.51
1756 1801 1.152777 CAAGTTGGCCCACCTGTCA 60.153 57.895 2.72 0.00 36.63 3.58
1757 1802 1.151450 AAGTTGGCCCACCTGTCAG 59.849 57.895 2.72 0.00 36.63 3.51
1758 1803 1.645402 AAGTTGGCCCACCTGTCAGT 61.645 55.000 2.72 0.00 36.63 3.41
1759 1804 1.898574 GTTGGCCCACCTGTCAGTG 60.899 63.158 0.00 0.00 36.63 3.66
1760 1805 2.075566 TTGGCCCACCTGTCAGTGA 61.076 57.895 0.00 0.00 40.34 3.41
1761 1806 2.032681 GGCCCACCTGTCAGTGAC 59.967 66.667 16.68 16.68 40.34 3.67
1762 1807 2.032681 GCCCACCTGTCAGTGACC 59.967 66.667 20.43 3.45 40.34 4.02
1763 1808 2.750350 CCCACCTGTCAGTGACCC 59.250 66.667 20.43 0.00 40.34 4.46
1764 1809 2.146724 CCCACCTGTCAGTGACCCA 61.147 63.158 20.43 1.94 40.34 4.51
1765 1810 1.705002 CCCACCTGTCAGTGACCCAA 61.705 60.000 20.43 1.10 40.34 4.12
1766 1811 0.535102 CCACCTGTCAGTGACCCAAC 60.535 60.000 20.43 0.00 40.34 3.77
1767 1812 0.469917 CACCTGTCAGTGACCCAACT 59.530 55.000 20.43 0.00 40.34 3.16
1769 1814 0.886490 CCTGTCAGTGACCCAACTGC 60.886 60.000 20.43 0.00 45.93 4.40
1770 1815 0.179048 CTGTCAGTGACCCAACTGCA 60.179 55.000 20.43 0.00 45.93 4.41
1771 1816 0.463654 TGTCAGTGACCCAACTGCAC 60.464 55.000 20.43 0.00 45.93 4.57
1772 1817 1.148273 TCAGTGACCCAACTGCACC 59.852 57.895 0.00 0.00 45.93 5.01
1773 1818 1.898574 CAGTGACCCAACTGCACCC 60.899 63.158 0.00 0.00 41.05 4.61
1774 1819 2.078665 AGTGACCCAACTGCACCCT 61.079 57.895 0.00 0.00 33.14 4.34
1775 1820 1.898574 GTGACCCAACTGCACCCTG 60.899 63.158 0.00 0.00 0.00 4.45
1776 1821 2.985847 GACCCAACTGCACCCTGC 60.986 66.667 0.00 0.00 45.29 4.85
1785 1830 2.342279 GCACCCTGCAGTACGTCA 59.658 61.111 13.81 0.00 44.26 4.35
1786 1831 1.738099 GCACCCTGCAGTACGTCAG 60.738 63.158 13.81 9.54 44.26 3.51
1789 1834 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
1790 1835 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
1791 1836 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
1792 1837 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
1793 1838 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
1794 1839 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
1795 1840 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
1796 1841 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
1797 1842 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
1798 1843 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
1799 1844 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
3486 3639 6.232581 TGTGTCAAAAGGTGATTTGGAAAT 57.767 33.333 0.48 0.00 40.04 2.17
3976 4166 5.595542 TGCAAAGAATTCCCCAATCTCTATG 59.404 40.000 0.65 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 445 7.066284 GCTGATACACAAATGAACTACTCCATT 59.934 37.037 0.00 0.00 34.75 3.16
446 447 5.874810 GCTGATACACAAATGAACTACTCCA 59.125 40.000 0.00 0.00 0.00 3.86
861 878 6.990341 TGGATGGATGATCAATTTATAGCG 57.010 37.500 0.00 0.00 31.91 4.26
1040 1067 2.949451 AGACAGCAGATTCACTACCG 57.051 50.000 0.00 0.00 0.00 4.02
1084 1111 4.385405 GCCGAGCTCTGCACTGGT 62.385 66.667 23.43 0.00 0.00 4.00
1092 1119 2.355193 GGAGTTGAGGCCGAGCTCT 61.355 63.158 12.85 6.05 0.00 4.09
1670 1715 0.250513 GAGGAGCCTCGTCCACAATT 59.749 55.000 2.98 0.00 39.34 2.32
1676 1721 2.766400 CGTCAGAGGAGCCTCGTCC 61.766 68.421 10.64 2.33 46.90 4.79
1677 1722 0.743701 TACGTCAGAGGAGCCTCGTC 60.744 60.000 10.69 6.30 46.90 4.20
1678 1723 1.025647 GTACGTCAGAGGAGCCTCGT 61.026 60.000 10.69 8.30 46.90 4.18
1679 1724 0.745128 AGTACGTCAGAGGAGCCTCG 60.745 60.000 10.69 6.49 46.90 4.63
1680 1725 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
1681 1726 1.316706 GCAGTACGTCAGAGGAGCCT 61.317 60.000 0.00 0.00 0.00 4.58
1682 1727 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
1683 1728 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
1684 1729 0.453793 CCTGCAGTACGTCAGAGGAG 59.546 60.000 13.81 0.00 32.26 3.69
1685 1730 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
1686 1731 1.251527 ACCCTGCAGTACGTCAGAGG 61.252 60.000 13.81 15.90 32.26 3.69
1687 1732 0.109086 CACCCTGCAGTACGTCAGAG 60.109 60.000 13.81 7.84 32.26 3.35
1688 1733 1.964448 CACCCTGCAGTACGTCAGA 59.036 57.895 13.81 0.00 32.26 3.27
1689 1734 1.738099 GCACCCTGCAGTACGTCAG 60.738 63.158 13.81 9.54 44.26 3.51
1690 1735 2.342279 GCACCCTGCAGTACGTCA 59.658 61.111 13.81 0.00 44.26 4.35
1700 1745 4.601794 TGGCCCAACTGCACCCTG 62.602 66.667 0.00 0.00 0.00 4.45
1701 1746 4.603535 GTGGCCCAACTGCACCCT 62.604 66.667 0.00 0.00 0.00 4.34
1702 1747 4.603535 AGTGGCCCAACTGCACCC 62.604 66.667 0.00 0.00 0.00 4.61
1703 1748 3.297620 CAGTGGCCCAACTGCACC 61.298 66.667 10.07 0.00 41.05 5.01
1704 1749 2.203337 TCAGTGGCCCAACTGCAC 60.203 61.111 16.60 0.00 45.93 4.57
1705 1750 2.203337 GTCAGTGGCCCAACTGCA 60.203 61.111 16.60 5.16 45.93 4.41
1706 1751 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
1708 1753 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
1709 1754 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
1710 1755 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
1716 1761 4.704833 CGGGCCCACCTGTCAGTG 62.705 72.222 24.92 0.00 37.57 3.66
1717 1762 4.954118 TCGGGCCCACCTGTCAGT 62.954 66.667 24.92 0.00 43.58 3.41
1718 1763 3.190738 TTTCGGGCCCACCTGTCAG 62.191 63.158 24.92 1.98 43.58 3.51
1719 1764 3.172106 TTTCGGGCCCACCTGTCA 61.172 61.111 24.92 0.00 43.58 3.58
1720 1765 2.359975 CTTTCGGGCCCACCTGTC 60.360 66.667 24.92 0.00 43.58 3.51
1721 1766 4.660938 GCTTTCGGGCCCACCTGT 62.661 66.667 24.92 0.00 43.58 4.00
1722 1767 4.659172 TGCTTTCGGGCCCACCTG 62.659 66.667 24.92 10.12 44.63 4.00
1723 1768 3.868200 CTTGCTTTCGGGCCCACCT 62.868 63.158 24.92 0.00 36.97 4.00
1724 1769 3.373565 CTTGCTTTCGGGCCCACC 61.374 66.667 24.92 4.81 0.00 4.61
1725 1770 2.200337 AACTTGCTTTCGGGCCCAC 61.200 57.895 24.92 5.64 0.00 4.61
1726 1771 2.197324 AACTTGCTTTCGGGCCCA 59.803 55.556 24.92 6.15 0.00 5.36
1727 1772 2.650778 CAACTTGCTTTCGGGCCC 59.349 61.111 13.57 13.57 0.00 5.80
1728 1773 2.650778 CCAACTTGCTTTCGGGCC 59.349 61.111 0.00 0.00 0.00 5.80
1729 1774 2.049156 GCCAACTTGCTTTCGGGC 60.049 61.111 0.00 0.00 0.00 6.13
1730 1775 2.650778 GGCCAACTTGCTTTCGGG 59.349 61.111 0.00 0.00 0.00 5.14
1731 1776 2.199652 TGGGCCAACTTGCTTTCGG 61.200 57.895 2.13 0.00 0.00 4.30
1732 1777 1.007387 GTGGGCCAACTTGCTTTCG 60.007 57.895 8.40 0.00 0.00 3.46
1733 1778 1.115326 AGGTGGGCCAACTTGCTTTC 61.115 55.000 21.01 0.00 37.19 2.62
1734 1779 1.075301 AGGTGGGCCAACTTGCTTT 60.075 52.632 21.01 0.00 37.19 3.51
1735 1780 1.833934 CAGGTGGGCCAACTTGCTT 60.834 57.895 24.60 0.00 37.19 3.91
1736 1781 2.203538 CAGGTGGGCCAACTTGCT 60.204 61.111 24.60 0.00 37.19 3.91
1737 1782 2.521708 ACAGGTGGGCCAACTTGC 60.522 61.111 24.60 0.90 37.19 4.01
1738 1783 1.152777 TGACAGGTGGGCCAACTTG 60.153 57.895 24.60 20.50 37.19 3.16
1739 1784 1.151450 CTGACAGGTGGGCCAACTT 59.849 57.895 24.60 13.86 37.19 2.66
1740 1785 2.078665 ACTGACAGGTGGGCCAACT 61.079 57.895 21.01 21.01 37.19 3.16
1741 1786 1.898574 CACTGACAGGTGGGCCAAC 60.899 63.158 15.52 15.52 37.19 3.77
1742 1787 2.075566 TCACTGACAGGTGGGCCAA 61.076 57.895 8.40 0.00 37.75 4.52
1743 1788 2.447572 TCACTGACAGGTGGGCCA 60.448 61.111 0.00 0.00 37.75 5.36
1744 1789 2.032681 GTCACTGACAGGTGGGCC 59.967 66.667 7.51 0.00 37.75 5.80
1745 1790 2.032681 GGTCACTGACAGGTGGGC 59.967 66.667 11.34 0.00 37.75 5.36
1746 1791 1.705002 TTGGGTCACTGACAGGTGGG 61.705 60.000 11.34 0.00 37.75 4.61
1747 1792 0.535102 GTTGGGTCACTGACAGGTGG 60.535 60.000 11.34 0.00 37.75 4.61
1748 1793 0.469917 AGTTGGGTCACTGACAGGTG 59.530 55.000 11.34 3.26 38.44 4.00
1749 1794 0.469917 CAGTTGGGTCACTGACAGGT 59.530 55.000 11.34 0.00 46.29 4.00
1750 1795 0.886490 GCAGTTGGGTCACTGACAGG 60.886 60.000 11.34 0.00 46.29 4.00
1751 1796 0.179048 TGCAGTTGGGTCACTGACAG 60.179 55.000 11.34 0.00 46.29 3.51
1752 1797 0.463654 GTGCAGTTGGGTCACTGACA 60.464 55.000 11.34 0.35 46.29 3.58
1753 1798 1.166531 GGTGCAGTTGGGTCACTGAC 61.167 60.000 5.01 0.00 46.29 3.51
1754 1799 1.148273 GGTGCAGTTGGGTCACTGA 59.852 57.895 5.01 0.00 46.29 3.41
1755 1800 1.898574 GGGTGCAGTTGGGTCACTG 60.899 63.158 0.00 0.00 46.15 3.66
1756 1801 2.078665 AGGGTGCAGTTGGGTCACT 61.079 57.895 0.00 0.00 0.00 3.41
1757 1802 1.898574 CAGGGTGCAGTTGGGTCAC 60.899 63.158 0.00 0.00 0.00 3.67
1758 1803 2.515398 CAGGGTGCAGTTGGGTCA 59.485 61.111 0.00 0.00 0.00 4.02
1759 1804 2.985847 GCAGGGTGCAGTTGGGTC 60.986 66.667 0.00 0.00 44.26 4.46
1768 1813 1.738099 CTGACGTACTGCAGGGTGC 60.738 63.158 19.93 0.92 45.29 5.01
1769 1814 1.079819 CCTGACGTACTGCAGGGTG 60.080 63.158 19.93 9.21 46.24 4.61
1770 1815 3.377656 CCTGACGTACTGCAGGGT 58.622 61.111 19.93 12.80 46.24 4.34
1773 1818 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
1774 1819 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
1775 1820 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
1776 1821 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
1777 1822 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
1778 1823 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
1779 1824 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
1780 1825 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
1781 1826 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
1782 1827 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
1783 1828 1.944896 TATGGACTCGGCTCCCCTGA 61.945 60.000 0.00 0.00 0.00 3.86
1784 1829 1.048724 TTATGGACTCGGCTCCCCTG 61.049 60.000 0.00 0.00 0.00 4.45
1785 1830 0.326238 TTTATGGACTCGGCTCCCCT 60.326 55.000 0.00 0.00 0.00 4.79
1786 1831 0.765510 ATTTATGGACTCGGCTCCCC 59.234 55.000 0.00 0.00 0.00 4.81
1787 1832 2.222027 CAATTTATGGACTCGGCTCCC 58.778 52.381 0.00 0.00 0.00 4.30
1788 1833 2.919228 ACAATTTATGGACTCGGCTCC 58.081 47.619 0.00 0.00 0.00 4.70
1789 1834 4.452455 CCATACAATTTATGGACTCGGCTC 59.548 45.833 15.88 0.00 45.57 4.70
1790 1835 4.389374 CCATACAATTTATGGACTCGGCT 58.611 43.478 15.88 0.00 45.57 5.52
1791 1836 3.502211 CCCATACAATTTATGGACTCGGC 59.498 47.826 19.80 0.00 45.57 5.54
1792 1837 4.968259 TCCCATACAATTTATGGACTCGG 58.032 43.478 19.80 9.18 45.57 4.63
1793 1838 4.997395 CCTCCCATACAATTTATGGACTCG 59.003 45.833 19.80 9.42 45.57 4.18
1794 1839 5.073144 TCCCTCCCATACAATTTATGGACTC 59.927 44.000 19.80 0.00 45.57 3.36
1795 1840 4.981647 TCCCTCCCATACAATTTATGGACT 59.018 41.667 19.80 0.00 45.57 3.85
1796 1841 5.319043 TCCCTCCCATACAATTTATGGAC 57.681 43.478 19.80 0.00 45.57 4.02
1797 1842 5.674496 TCTTCCCTCCCATACAATTTATGGA 59.326 40.000 19.80 10.52 45.57 3.41
1798 1843 5.770162 GTCTTCCCTCCCATACAATTTATGG 59.230 44.000 14.75 14.75 43.08 2.74
1799 1844 5.770162 GGTCTTCCCTCCCATACAATTTATG 59.230 44.000 2.46 2.46 0.00 1.90
2035 2086 8.420222 TCATTGTTTTCTTCAATTTGGCTAAGA 58.580 29.630 0.00 0.00 33.92 2.10
3119 3269 5.388654 AGTCACTTCTGAACCAAATTCCAT 58.611 37.500 0.00 0.00 36.36 3.41
3120 3270 4.792068 AGTCACTTCTGAACCAAATTCCA 58.208 39.130 0.00 0.00 36.36 3.53
3462 3615 4.916983 TCCAAATCACCTTTTGACACAG 57.083 40.909 0.00 0.00 38.58 3.66
3486 3639 0.631753 TCCCCAAACCAACCTCAACA 59.368 50.000 0.00 0.00 0.00 3.33
3962 4152 2.489619 GGCAATGCATAGAGATTGGGGA 60.490 50.000 7.79 0.00 31.38 4.81
3976 4166 1.143183 CCTGCAGGAATGGCAATGC 59.857 57.895 29.88 0.00 41.39 3.56
4196 4386 8.621532 TTTAAATGTGATGCTCTCTACTTTGT 57.378 30.769 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.