Multiple sequence alignment - TraesCS7B01G478900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G478900 chr7B 100.000 3200 0 0 1 3200 733773063 733776262 0.000000e+00 5910.0
1 TraesCS7B01G478900 chr7B 82.168 572 93 7 1005 1571 734058918 734059485 1.730000e-132 483.0
2 TraesCS7B01G478900 chr7B 81.136 493 62 15 1906 2369 734060318 734060808 1.810000e-97 366.0
3 TraesCS7B01G478900 chr7B 76.000 550 107 15 959 1498 733597069 733596535 8.800000e-66 261.0
4 TraesCS7B01G478900 chr7A 95.050 1111 31 6 132 1240 726904544 726903456 0.000000e+00 1725.0
5 TraesCS7B01G478900 chr7A 94.582 646 27 6 1240 1880 726899532 726898890 0.000000e+00 992.0
6 TraesCS7B01G478900 chr7A 94.919 492 22 2 1879 2369 726898860 726898371 0.000000e+00 767.0
7 TraesCS7B01G478900 chr7A 76.846 596 116 19 1003 1589 727053671 727053089 1.850000e-82 316.0
8 TraesCS7B01G478900 chr7A 77.309 498 97 11 1003 1498 727124577 727124094 2.430000e-71 279.0
9 TraesCS7B01G478900 chr7A 93.750 144 7 2 1 143 726904732 726904590 6.950000e-52 215.0
10 TraesCS7B01G478900 chr7A 90.741 54 4 1 2421 2474 726898272 726898220 1.590000e-08 71.3
11 TraesCS7B01G478900 chr3D 89.731 633 58 5 2478 3109 141652486 141651860 0.000000e+00 802.0
12 TraesCS7B01G478900 chr1A 81.356 649 89 19 2478 3109 406601016 406601649 1.710000e-137 499.0
13 TraesCS7B01G478900 chr5B 81.231 650 89 22 2478 3109 430291086 430291720 7.970000e-136 494.0
14 TraesCS7B01G478900 chr3B 80.308 650 95 21 2478 3109 167730055 167730689 8.090000e-126 460.0
15 TraesCS7B01G478900 chr6B 77.521 476 79 17 2651 3109 3274643 3275107 8.800000e-66 261.0
16 TraesCS7B01G478900 chr6A 80.435 92 15 3 2474 2564 596634856 596634945 2.060000e-07 67.6
17 TraesCS7B01G478900 chr6D 100.000 28 0 0 1758 1785 324758363 324758336 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G478900 chr7B 733773063 733776262 3199 False 5910.00 5910 100.0000 1 3200 1 chr7B.!!$F1 3199
1 TraesCS7B01G478900 chr7B 734058918 734060808 1890 False 424.50 483 81.6520 1005 2369 2 chr7B.!!$F2 1364
2 TraesCS7B01G478900 chr7B 733596535 733597069 534 True 261.00 261 76.0000 959 1498 1 chr7B.!!$R1 539
3 TraesCS7B01G478900 chr7A 726898220 726904732 6512 True 754.06 1725 93.8084 1 2474 5 chr7A.!!$R3 2473
4 TraesCS7B01G478900 chr7A 727053089 727053671 582 True 316.00 316 76.8460 1003 1589 1 chr7A.!!$R1 586
5 TraesCS7B01G478900 chr3D 141651860 141652486 626 True 802.00 802 89.7310 2478 3109 1 chr3D.!!$R1 631
6 TraesCS7B01G478900 chr1A 406601016 406601649 633 False 499.00 499 81.3560 2478 3109 1 chr1A.!!$F1 631
7 TraesCS7B01G478900 chr5B 430291086 430291720 634 False 494.00 494 81.2310 2478 3109 1 chr5B.!!$F1 631
8 TraesCS7B01G478900 chr3B 167730055 167730689 634 False 460.00 460 80.3080 2478 3109 1 chr3B.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 528 1.203288 TGCCCAATCACCCCAATTTCT 60.203 47.619 0.0 0.00 0.00 2.52 F
1189 1251 0.863799 CATCCATGGATTCTGTCGCG 59.136 55.000 25.2 7.26 31.62 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 6454 1.202758 ACTGCCGTCAGAATTTCACCA 60.203 47.619 0.00 0.00 42.95 4.17 R
3119 7714 0.112606 ACTTCCTCTGGACCAGACGA 59.887 55.000 20.74 18.38 35.39 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.882888 TGAAGTCAAATGTTCCCTGACAC 59.117 43.478 4.43 0.00 41.58 3.67
84 85 7.759886 CACGGTTACTATTCATATCCATACCAG 59.240 40.741 0.00 0.00 0.00 4.00
98 99 2.472695 TACCAGTGAGCAATCACACC 57.527 50.000 10.72 0.00 42.68 4.16
110 111 3.439129 GCAATCACACCCACTAACTAACC 59.561 47.826 0.00 0.00 0.00 2.85
116 117 2.307686 CACCCACTAACTAACCACCCAT 59.692 50.000 0.00 0.00 0.00 4.00
169 227 3.097614 AGGACTAACCAGTACGCATCTT 58.902 45.455 0.00 0.00 40.96 2.40
224 282 8.845413 TTAAATTTTTGGCAAGCATCTTATGT 57.155 26.923 0.00 0.00 0.00 2.29
310 368 6.367983 AGGATAAACAAGATGGTGTGCATAT 58.632 36.000 0.00 0.00 0.00 1.78
314 372 3.820557 ACAAGATGGTGTGCATATACCC 58.179 45.455 13.19 0.00 37.28 3.69
350 408 3.006967 CCGTGAGCTGGCCTATAAATACT 59.993 47.826 3.32 0.00 0.00 2.12
404 462 5.357878 CACAATTCAGCCTAGATAAAAGCCA 59.642 40.000 0.00 0.00 0.00 4.75
470 528 1.203288 TGCCCAATCACCCCAATTTCT 60.203 47.619 0.00 0.00 0.00 2.52
759 819 7.604927 TGAAAGGTAAGCGTACATACAGAAAAT 59.395 33.333 11.95 0.00 31.21 1.82
761 821 9.439500 AAAGGTAAGCGTACATACAGAAAATTA 57.561 29.630 11.95 0.00 31.21 1.40
933 993 4.647611 ACCATAACATCAAGTCCAAACGA 58.352 39.130 0.00 0.00 0.00 3.85
1095 1157 4.436998 GTCGGCGGGACAGGTGAG 62.437 72.222 7.21 0.00 45.36 3.51
1189 1251 0.863799 CATCCATGGATTCTGTCGCG 59.136 55.000 25.20 7.26 31.62 5.87
1406 5395 7.986553 ATCACCATCCTCTATAAGGGAATAG 57.013 40.000 0.00 0.00 46.23 1.73
1511 5500 6.040247 CGCACAGAGGTACAGTTATTATCAA 58.960 40.000 0.00 0.00 0.00 2.57
1603 5790 5.786121 ATTCATGGCCTGGCTATATACTT 57.214 39.130 17.67 0.00 0.00 2.24
1604 5791 4.558226 TCATGGCCTGGCTATATACTTG 57.442 45.455 17.67 5.98 0.00 3.16
1612 5800 5.542779 CCTGGCTATATACTTGGTCAGTTC 58.457 45.833 1.93 0.00 36.88 3.01
1630 5818 7.756722 GGTCAGTTCATTTTATCAGGTGAATTG 59.243 37.037 0.00 0.00 38.72 2.32
1632 5820 9.076781 TCAGTTCATTTTATCAGGTGAATTGAA 57.923 29.630 8.91 0.00 41.32 2.69
1670 5858 8.909671 CAAAGTCAAGCTTTTCTATCATGAAAC 58.090 33.333 0.00 0.00 44.41 2.78
1715 5903 9.634163 TGTATATAAGGTGCATTAGTTATCACG 57.366 33.333 0.00 0.00 0.00 4.35
1733 5921 2.695666 CACGTCAGTCCCATTAGATCCT 59.304 50.000 0.00 0.00 0.00 3.24
1745 5933 7.066766 GTCCCATTAGATCCTTCATGCAATATC 59.933 40.741 0.00 0.00 0.00 1.63
1873 6068 9.838339 ATATACAAAGGAATGAAGGTAGAAGTG 57.162 33.333 0.00 0.00 0.00 3.16
1875 6070 5.765182 ACAAAGGAATGAAGGTAGAAGTGTG 59.235 40.000 0.00 0.00 0.00 3.82
1877 6072 6.681729 AAGGAATGAAGGTAGAAGTGTGTA 57.318 37.500 0.00 0.00 0.00 2.90
1890 6122 6.064846 AGAAGTGTGTAGAACTTGCAAATG 57.935 37.500 0.00 0.00 37.98 2.32
1897 6129 7.323656 GTGTGTAGAACTTGCAAATGTTATGAC 59.676 37.037 0.00 2.65 0.00 3.06
1907 6414 6.094719 TGCAAATGTTATGACTTCATTGAGC 58.905 36.000 0.00 0.00 37.76 4.26
1947 6454 2.671070 CAGATCGTGTTGGGCCCT 59.329 61.111 25.70 0.00 0.00 5.19
1950 6457 3.256960 ATCGTGTTGGGCCCTGGT 61.257 61.111 25.70 0.34 0.00 4.00
1968 6475 2.037902 TGGTGAAATTCTGACGGCAGTA 59.962 45.455 19.93 9.68 42.84 2.74
2045 6552 5.028375 GCAGACACTCAAGTTTGTAACAAC 58.972 41.667 0.00 0.00 0.00 3.32
2082 6589 4.153655 GGACCTTACGGAAATCTTGACAAC 59.846 45.833 0.00 0.00 0.00 3.32
2215 6730 3.075148 GCCTAAGAGGTTTGGTTCAGTC 58.925 50.000 0.00 0.00 37.80 3.51
2270 6803 9.845305 GTAAAAACGAGATGGTTAAAGATATCG 57.155 33.333 9.35 9.35 38.83 2.92
2298 6831 7.624360 TTTCAGTGGTAATTGATCCATGTAC 57.376 36.000 0.00 0.00 36.09 2.90
2301 6834 6.767423 TCAGTGGTAATTGATCCATGTACATG 59.233 38.462 26.02 26.02 36.09 3.21
2325 6862 0.590682 TGTGCGGCTGTATTGTGTTG 59.409 50.000 0.00 0.00 0.00 3.33
2382 6945 6.722129 TCTCTAAAACTTGTAAGGAGCTCTCT 59.278 38.462 14.64 6.28 0.00 3.10
2398 6961 6.589907 GGAGCTCTCTTTTTGTTTTGTTTTGA 59.410 34.615 14.64 0.00 0.00 2.69
2403 6966 7.568433 TCTCTTTTTGTTTTGTTTTGAAACGG 58.432 30.769 2.53 0.00 41.74 4.44
2407 6970 6.463483 TTTGTTTTGTTTTGAAACGGGTAC 57.537 33.333 2.53 0.00 41.74 3.34
2408 6971 5.130292 TGTTTTGTTTTGAAACGGGTACA 57.870 34.783 0.00 2.21 41.74 2.90
2409 6972 4.922103 TGTTTTGTTTTGAAACGGGTACAC 59.078 37.500 0.00 0.00 41.74 2.90
2411 6974 4.358494 TTGTTTTGAAACGGGTACACAG 57.642 40.909 0.00 0.00 41.74 3.66
2412 6975 3.607741 TGTTTTGAAACGGGTACACAGA 58.392 40.909 0.00 0.00 41.74 3.41
2413 6976 4.008330 TGTTTTGAAACGGGTACACAGAA 58.992 39.130 0.00 0.00 41.74 3.02
2414 6977 4.458295 TGTTTTGAAACGGGTACACAGAAA 59.542 37.500 0.00 0.00 41.74 2.52
2415 6978 5.125739 TGTTTTGAAACGGGTACACAGAAAT 59.874 36.000 0.00 0.00 41.74 2.17
2416 6979 4.822036 TTGAAACGGGTACACAGAAATG 57.178 40.909 0.00 0.00 0.00 2.32
2417 6980 4.074627 TGAAACGGGTACACAGAAATGA 57.925 40.909 0.00 0.00 0.00 2.57
2418 6981 3.810941 TGAAACGGGTACACAGAAATGAC 59.189 43.478 0.00 0.00 0.00 3.06
2448 7032 5.070580 AGCTATTGACCATACTCACTTACCC 59.929 44.000 0.00 0.00 0.00 3.69
2453 7037 7.504926 TTGACCATACTCACTTACCCTAATT 57.495 36.000 0.00 0.00 0.00 1.40
2456 7040 8.480501 TGACCATACTCACTTACCCTAATTTAC 58.519 37.037 0.00 0.00 0.00 2.01
2462 7046 7.981142 ACTCACTTACCCTAATTTACTTCCAA 58.019 34.615 0.00 0.00 0.00 3.53
2467 7051 8.395605 ACTTACCCTAATTTACTTCCAATTGGA 58.604 33.333 23.63 23.63 43.73 3.53
2474 7058 4.759516 TTACTTCCAATTGGACTTTCGC 57.240 40.909 27.04 0.00 45.39 4.70
2475 7059 2.863809 ACTTCCAATTGGACTTTCGCT 58.136 42.857 27.04 1.64 45.39 4.93
2476 7060 2.814336 ACTTCCAATTGGACTTTCGCTC 59.186 45.455 27.04 0.00 45.39 5.03
2484 7068 6.438763 CAATTGGACTTTCGCTCTTTTTACT 58.561 36.000 0.00 0.00 0.00 2.24
2500 7084 5.587388 TTTTACTGTACCCTGATACTCCG 57.413 43.478 0.00 0.00 0.00 4.63
2564 7148 7.226128 CGTTTGAGAGGGTACTTTAGTCTTTTT 59.774 37.037 0.00 0.00 0.00 1.94
2584 7168 6.371809 TTTTTGTGTCTTTCATCTAAGCGT 57.628 33.333 0.00 0.00 0.00 5.07
2617 7201 7.246027 TGATGTATTCTCTGGGCCTACTAATA 58.754 38.462 4.53 1.61 0.00 0.98
2649 7233 1.206578 CGATCAAGCGCAAACCGTT 59.793 52.632 11.47 0.00 39.71 4.44
2655 7239 1.092921 AAGCGCAAACCGTTGTCTCA 61.093 50.000 11.47 0.00 39.71 3.27
2769 7357 2.265904 CGATCCTCCGCCGTATCCA 61.266 63.158 0.00 0.00 0.00 3.41
2781 7369 2.629051 CCGTATCCAAGTCCTTTGACC 58.371 52.381 0.00 0.00 42.81 4.02
2792 7380 0.817634 CCTTTGACCGGACAGTGCAA 60.818 55.000 9.46 0.00 0.00 4.08
2868 7460 9.950680 GGAATGTTGTAAATGTTGATTATCGAT 57.049 29.630 2.16 2.16 0.00 3.59
2889 7481 3.749404 TGTCACGTTTCGTTTCTTTTGG 58.251 40.909 0.00 0.00 38.32 3.28
2895 7487 2.570442 TTCGTTTCTTTTGGGTGCAC 57.430 45.000 8.80 8.80 0.00 4.57
2911 7503 4.969293 GGTGCACCACTCATCTGTTGATG 61.969 52.174 31.23 0.03 42.38 3.07
2942 7537 1.303309 GAGCCATGACTTTCGGATGG 58.697 55.000 0.00 0.00 39.84 3.51
2962 7557 2.616842 GGTGCATCCGTAGTTTATTGGG 59.383 50.000 0.00 0.00 0.00 4.12
2997 7592 1.518056 CGGCTGGTTCACACTGCATT 61.518 55.000 0.00 0.00 0.00 3.56
3008 7603 6.371548 GGTTCACACTGCATTCTAGTCAAATA 59.628 38.462 0.00 0.00 0.00 1.40
3012 7607 7.823799 TCACACTGCATTCTAGTCAAATATTGA 59.176 33.333 0.00 0.00 37.33 2.57
3030 7625 1.733360 TGAAATTACCGTAACTGCCGC 59.267 47.619 0.00 0.00 0.00 6.53
3109 7704 9.250246 CTTAAAATCAAGGTACTCCCCAATTTA 57.750 33.333 0.00 0.00 38.49 1.40
3110 7705 9.777008 TTAAAATCAAGGTACTCCCCAATTTAT 57.223 29.630 0.00 0.00 38.49 1.40
3111 7706 7.898014 AAATCAAGGTACTCCCCAATTTATC 57.102 36.000 0.00 0.00 38.49 1.75
3112 7707 5.382664 TCAAGGTACTCCCCAATTTATCC 57.617 43.478 0.00 0.00 38.49 2.59
3113 7708 5.043762 TCAAGGTACTCCCCAATTTATCCT 58.956 41.667 0.00 0.00 38.49 3.24
3114 7709 5.494706 TCAAGGTACTCCCCAATTTATCCTT 59.505 40.000 0.00 0.00 38.49 3.36
3115 7710 6.011096 TCAAGGTACTCCCCAATTTATCCTTT 60.011 38.462 0.00 0.00 38.49 3.11
3116 7711 7.184936 TCAAGGTACTCCCCAATTTATCCTTTA 59.815 37.037 0.00 0.00 38.49 1.85
3117 7712 7.723109 AGGTACTCCCCAATTTATCCTTTAT 57.277 36.000 0.00 0.00 0.00 1.40
3118 7713 8.126241 AGGTACTCCCCAATTTATCCTTTATT 57.874 34.615 0.00 0.00 0.00 1.40
3119 7714 8.574853 AGGTACTCCCCAATTTATCCTTTATTT 58.425 33.333 0.00 0.00 0.00 1.40
3120 7715 8.857098 GGTACTCCCCAATTTATCCTTTATTTC 58.143 37.037 0.00 0.00 0.00 2.17
3121 7716 7.582667 ACTCCCCAATTTATCCTTTATTTCG 57.417 36.000 0.00 0.00 0.00 3.46
3122 7717 7.123383 ACTCCCCAATTTATCCTTTATTTCGT 58.877 34.615 0.00 0.00 0.00 3.85
3123 7718 7.284716 ACTCCCCAATTTATCCTTTATTTCGTC 59.715 37.037 0.00 0.00 0.00 4.20
3124 7719 7.351166 TCCCCAATTTATCCTTTATTTCGTCT 58.649 34.615 0.00 0.00 0.00 4.18
3125 7720 7.284489 TCCCCAATTTATCCTTTATTTCGTCTG 59.716 37.037 0.00 0.00 0.00 3.51
3126 7721 7.425606 CCCAATTTATCCTTTATTTCGTCTGG 58.574 38.462 0.00 0.00 0.00 3.86
3127 7722 7.068226 CCCAATTTATCCTTTATTTCGTCTGGT 59.932 37.037 0.00 0.00 0.00 4.00
3128 7723 8.129211 CCAATTTATCCTTTATTTCGTCTGGTC 58.871 37.037 0.00 0.00 0.00 4.02
3129 7724 7.803279 ATTTATCCTTTATTTCGTCTGGTCC 57.197 36.000 0.00 0.00 0.00 4.46
3130 7725 4.837093 ATCCTTTATTTCGTCTGGTCCA 57.163 40.909 0.00 0.00 0.00 4.02
3131 7726 4.202245 TCCTTTATTTCGTCTGGTCCAG 57.798 45.455 13.21 13.21 0.00 3.86
3132 7727 3.835978 TCCTTTATTTCGTCTGGTCCAGA 59.164 43.478 18.15 18.15 38.25 3.86
3133 7728 4.081642 TCCTTTATTTCGTCTGGTCCAGAG 60.082 45.833 22.46 15.39 41.46 3.35
3134 7729 3.887621 TTATTTCGTCTGGTCCAGAGG 57.112 47.619 28.48 28.48 44.58 3.69
3138 7733 2.659800 CGTCTGGTCCAGAGGAAGT 58.340 57.895 29.92 0.00 45.62 3.01
3139 7734 0.969894 CGTCTGGTCCAGAGGAAGTT 59.030 55.000 29.92 0.00 45.62 2.66
3140 7735 1.344763 CGTCTGGTCCAGAGGAAGTTT 59.655 52.381 29.92 0.00 45.62 2.66
3141 7736 2.224305 CGTCTGGTCCAGAGGAAGTTTT 60.224 50.000 29.92 0.00 45.62 2.43
3142 7737 3.403968 GTCTGGTCCAGAGGAAGTTTTC 58.596 50.000 22.46 3.24 41.46 2.29
3143 7738 3.071747 GTCTGGTCCAGAGGAAGTTTTCT 59.928 47.826 22.46 0.00 41.46 2.52
3144 7739 3.716872 TCTGGTCCAGAGGAAGTTTTCTT 59.283 43.478 18.15 0.00 37.99 2.52
3145 7740 4.166144 TCTGGTCCAGAGGAAGTTTTCTTT 59.834 41.667 18.15 0.00 36.55 2.52
3146 7741 4.867086 TGGTCCAGAGGAAGTTTTCTTTT 58.133 39.130 0.00 0.00 40.61 2.27
3147 7742 6.008696 TGGTCCAGAGGAAGTTTTCTTTTA 57.991 37.500 0.00 0.00 40.61 1.52
3148 7743 6.428295 TGGTCCAGAGGAAGTTTTCTTTTAA 58.572 36.000 0.00 0.00 40.61 1.52
3149 7744 6.320418 TGGTCCAGAGGAAGTTTTCTTTTAAC 59.680 38.462 0.00 0.00 40.61 2.01
3150 7745 6.320418 GGTCCAGAGGAAGTTTTCTTTTAACA 59.680 38.462 0.00 0.00 40.61 2.41
3151 7746 7.194278 GTCCAGAGGAAGTTTTCTTTTAACAC 58.806 38.462 0.00 0.00 40.61 3.32
3152 7747 7.067129 GTCCAGAGGAAGTTTTCTTTTAACACT 59.933 37.037 0.00 0.00 40.61 3.55
3153 7748 8.269317 TCCAGAGGAAGTTTTCTTTTAACACTA 58.731 33.333 0.00 0.00 40.61 2.74
3154 7749 8.560374 CCAGAGGAAGTTTTCTTTTAACACTAG 58.440 37.037 0.00 0.00 40.61 2.57
3155 7750 8.070769 CAGAGGAAGTTTTCTTTTAACACTAGC 58.929 37.037 0.00 0.00 40.61 3.42
3156 7751 6.956047 AGGAAGTTTTCTTTTAACACTAGCG 58.044 36.000 0.00 0.00 40.61 4.26
3157 7752 6.541278 AGGAAGTTTTCTTTTAACACTAGCGT 59.459 34.615 0.00 0.00 40.61 5.07
3158 7753 6.849811 GGAAGTTTTCTTTTAACACTAGCGTC 59.150 38.462 0.00 0.00 40.61 5.19
3159 7754 7.254692 GGAAGTTTTCTTTTAACACTAGCGTCT 60.255 37.037 0.00 0.00 40.61 4.18
3160 7755 7.549615 AGTTTTCTTTTAACACTAGCGTCTT 57.450 32.000 0.00 0.00 0.00 3.01
3161 7756 7.407337 AGTTTTCTTTTAACACTAGCGTCTTG 58.593 34.615 0.00 0.00 0.00 3.02
3162 7757 6.913873 TTTCTTTTAACACTAGCGTCTTGT 57.086 33.333 0.00 0.00 0.00 3.16
3163 7758 6.520792 TTCTTTTAACACTAGCGTCTTGTC 57.479 37.500 0.00 0.00 0.00 3.18
3164 7759 4.986659 TCTTTTAACACTAGCGTCTTGTCC 59.013 41.667 0.00 0.00 0.00 4.02
3165 7760 4.325028 TTTAACACTAGCGTCTTGTCCA 57.675 40.909 0.00 0.00 0.00 4.02
3166 7761 2.440539 AACACTAGCGTCTTGTCCAG 57.559 50.000 0.00 0.00 0.00 3.86
3167 7762 1.617322 ACACTAGCGTCTTGTCCAGA 58.383 50.000 0.00 0.00 0.00 3.86
3168 7763 2.171840 ACACTAGCGTCTTGTCCAGAT 58.828 47.619 0.00 0.00 32.60 2.90
3169 7764 2.164624 ACACTAGCGTCTTGTCCAGATC 59.835 50.000 0.00 0.00 32.60 2.75
3170 7765 2.425312 CACTAGCGTCTTGTCCAGATCT 59.575 50.000 0.00 0.00 32.60 2.75
3171 7766 3.628032 CACTAGCGTCTTGTCCAGATCTA 59.372 47.826 0.00 0.00 32.60 1.98
3172 7767 4.096532 CACTAGCGTCTTGTCCAGATCTAA 59.903 45.833 0.00 0.00 32.60 2.10
3173 7768 4.890581 ACTAGCGTCTTGTCCAGATCTAAT 59.109 41.667 0.00 0.00 32.60 1.73
3174 7769 4.744795 AGCGTCTTGTCCAGATCTAATT 57.255 40.909 0.00 0.00 32.60 1.40
3175 7770 5.091261 AGCGTCTTGTCCAGATCTAATTT 57.909 39.130 0.00 0.00 32.60 1.82
3176 7771 6.222038 AGCGTCTTGTCCAGATCTAATTTA 57.778 37.500 0.00 0.00 32.60 1.40
3177 7772 6.640518 AGCGTCTTGTCCAGATCTAATTTAA 58.359 36.000 0.00 0.00 32.60 1.52
3178 7773 6.535508 AGCGTCTTGTCCAGATCTAATTTAAC 59.464 38.462 0.00 0.00 32.60 2.01
3179 7774 6.535508 GCGTCTTGTCCAGATCTAATTTAACT 59.464 38.462 0.00 0.00 32.60 2.24
3180 7775 7.254151 GCGTCTTGTCCAGATCTAATTTAACTC 60.254 40.741 0.00 0.00 32.60 3.01
3181 7776 7.043986 CGTCTTGTCCAGATCTAATTTAACTCG 60.044 40.741 0.00 0.00 32.60 4.18
3182 7777 7.974501 GTCTTGTCCAGATCTAATTTAACTCGA 59.025 37.037 0.00 0.00 32.60 4.04
3183 7778 8.528643 TCTTGTCCAGATCTAATTTAACTCGAA 58.471 33.333 0.00 0.00 0.00 3.71
3184 7779 8.475331 TTGTCCAGATCTAATTTAACTCGAAC 57.525 34.615 0.00 0.00 0.00 3.95
3185 7780 6.750501 TGTCCAGATCTAATTTAACTCGAACG 59.249 38.462 0.00 0.00 0.00 3.95
3186 7781 6.750963 GTCCAGATCTAATTTAACTCGAACGT 59.249 38.462 0.00 0.00 0.00 3.99
3187 7782 6.971184 TCCAGATCTAATTTAACTCGAACGTC 59.029 38.462 0.00 0.00 0.00 4.34
3188 7783 6.075519 CCAGATCTAATTTAACTCGAACGTCG 60.076 42.308 0.00 0.00 42.10 5.12
3198 7793 2.174060 TCGAACGTCGAGATCACATG 57.826 50.000 0.00 0.00 44.82 3.21
3199 7794 1.191944 CGAACGTCGAGATCACATGG 58.808 55.000 0.00 0.00 43.74 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.006430 TCTCTATTGACAAACGGTGCTCA 59.994 43.478 0.00 0.00 0.00 4.26
39 40 3.058914 CGTGTCAGGGAACATTTGACTTC 60.059 47.826 5.58 0.00 41.30 3.01
44 45 1.604604 ACCGTGTCAGGGAACATTTG 58.395 50.000 18.37 0.00 35.02 2.32
60 61 7.759886 CACTGGTATGGATATGAATAGTAACCG 59.240 40.741 0.00 0.00 0.00 4.44
98 99 2.844348 AGGATGGGTGGTTAGTTAGTGG 59.156 50.000 0.00 0.00 0.00 4.00
140 141 7.558604 TGCGTACTGGTTAGTCCTTTAATTAT 58.441 34.615 0.00 0.00 38.36 1.28
141 142 6.934056 TGCGTACTGGTTAGTCCTTTAATTA 58.066 36.000 0.00 0.00 38.36 1.40
169 227 6.001449 AGAACATAAAATGGTAGCCAGCTA 57.999 37.500 0.00 0.00 36.75 3.32
201 259 7.748691 AACATAAGATGCTTGCCAAAAATTT 57.251 28.000 0.00 0.00 0.00 1.82
202 260 8.313292 TCTAACATAAGATGCTTGCCAAAAATT 58.687 29.630 0.00 0.00 0.00 1.82
203 261 7.839907 TCTAACATAAGATGCTTGCCAAAAAT 58.160 30.769 0.00 0.00 0.00 1.82
204 262 7.225784 TCTAACATAAGATGCTTGCCAAAAA 57.774 32.000 0.00 0.00 0.00 1.94
205 263 6.832520 TCTAACATAAGATGCTTGCCAAAA 57.167 33.333 0.00 0.00 0.00 2.44
233 291 1.523711 CGACTTGTGCACCACCAGT 60.524 57.895 15.69 10.90 41.88 4.00
310 368 2.024080 ACGGGTATCAAGTAGGTGGGTA 60.024 50.000 0.00 0.00 0.00 3.69
314 372 2.481449 GCTCACGGGTATCAAGTAGGTG 60.481 54.545 0.00 0.00 0.00 4.00
350 408 5.445964 GGAAAATGGAAGCTTATGGGACTA 58.554 41.667 0.00 0.00 0.00 2.59
404 462 6.260870 ACGATGCTAGTAGATCGATCAAAT 57.739 37.500 26.47 13.69 43.36 2.32
470 528 0.876777 CCGGCGAATGCGGTAACATA 60.877 55.000 9.30 0.00 44.10 2.29
503 561 2.628657 AGCTACTGAACTCAAACTCGGT 59.371 45.455 0.00 0.00 35.37 4.69
655 713 0.806492 GTGCACGGGCTACTAGCTTC 60.806 60.000 12.74 0.85 41.99 3.86
727 785 5.142061 TGTACGCTTACCTTTCAATCTCA 57.858 39.130 0.00 0.00 0.00 3.27
759 819 6.999272 AGAGAATATGGCGAGAGAAGTACTAA 59.001 38.462 0.00 0.00 0.00 2.24
761 821 5.381757 AGAGAATATGGCGAGAGAAGTACT 58.618 41.667 0.00 0.00 0.00 2.73
933 993 0.392998 CCTCGGCTAAATGCACTGGT 60.393 55.000 0.00 0.00 45.15 4.00
954 1014 3.244215 TGACAACCTGAGAAACTAGCTGG 60.244 47.826 0.00 0.00 0.00 4.85
1013 1075 1.600413 GCAGCGTGCTTTGCTTAAACT 60.600 47.619 0.00 0.00 41.72 2.66
1189 1251 0.673022 CCTGCTCTTCTCACCTGCAC 60.673 60.000 0.00 0.00 0.00 4.57
1406 5395 9.374960 GATGTAAGAATATTCGAATGAAGCAAC 57.625 33.333 20.87 11.96 37.57 4.17
1447 5436 1.764571 AAGGACCTGTTGTGCGCCTA 61.765 55.000 4.18 0.00 40.82 3.93
1603 5790 5.875224 TCACCTGATAAAATGAACTGACCA 58.125 37.500 0.00 0.00 0.00 4.02
1604 5791 6.817765 TTCACCTGATAAAATGAACTGACC 57.182 37.500 0.00 0.00 0.00 4.02
1715 5903 5.303971 CATGAAGGATCTAATGGGACTGAC 58.696 45.833 0.00 0.00 0.00 3.51
1873 6068 7.584987 AGTCATAACATTTGCAAGTTCTACAC 58.415 34.615 7.29 2.41 0.00 2.90
1875 6070 8.289618 TGAAGTCATAACATTTGCAAGTTCTAC 58.710 33.333 7.29 5.44 0.00 2.59
1877 6072 7.275888 TGAAGTCATAACATTTGCAAGTTCT 57.724 32.000 7.29 0.00 0.00 3.01
1890 6122 8.012241 GGAATAATCGCTCAATGAAGTCATAAC 58.988 37.037 0.00 0.00 35.10 1.89
1907 6414 9.166173 TCTGCATATCAATAAAGGGAATAATCG 57.834 33.333 0.00 0.00 0.00 3.34
1947 6454 1.202758 ACTGCCGTCAGAATTTCACCA 60.203 47.619 0.00 0.00 42.95 4.17
1950 6457 4.183865 CAGATACTGCCGTCAGAATTTCA 58.816 43.478 0.00 0.00 42.95 2.69
1968 6475 3.708403 TGCTTGATGACTGTTCCAGAT 57.292 42.857 0.00 0.00 35.18 2.90
2045 6552 6.119144 CGTAAGGTCCATATGTTTTCTTGG 57.881 41.667 1.24 0.00 0.00 3.61
2082 6589 8.391075 TGAAAGGAGTACCAAGTTCTTTATTG 57.609 34.615 0.00 0.00 38.94 1.90
2121 6628 2.872842 GCCAACAATTGCTTTGCCATCT 60.873 45.455 5.05 0.00 39.03 2.90
2215 6730 9.689976 TTATTTGGAACATACACTGAAATGTTG 57.310 29.630 14.97 0.00 44.27 3.33
2270 6803 4.458989 TGGATCAATTACCACTGAAAGCAC 59.541 41.667 0.00 0.00 37.60 4.40
2298 6831 4.746951 CAGCCGCACACGCACATG 62.747 66.667 0.00 0.00 38.40 3.21
2301 6834 2.677003 AATACAGCCGCACACGCAC 61.677 57.895 0.00 0.00 38.40 5.34
2353 6890 7.510407 AGCTCCTTACAAGTTTTAGAGAAGTT 58.490 34.615 0.00 0.00 0.00 2.66
2382 6945 6.373186 ACCCGTTTCAAAACAAAACAAAAA 57.627 29.167 6.45 0.00 38.81 1.94
2398 6961 4.081322 AGTCATTTCTGTGTACCCGTTT 57.919 40.909 0.00 0.00 0.00 3.60
2403 6966 4.870991 GCTTCCTAGTCATTTCTGTGTACC 59.129 45.833 0.00 0.00 0.00 3.34
2407 6970 7.010923 GTCAATAGCTTCCTAGTCATTTCTGTG 59.989 40.741 0.00 0.00 0.00 3.66
2408 6971 7.044798 GTCAATAGCTTCCTAGTCATTTCTGT 58.955 38.462 0.00 0.00 0.00 3.41
2409 6972 6.481644 GGTCAATAGCTTCCTAGTCATTTCTG 59.518 42.308 0.00 0.00 0.00 3.02
2411 6974 6.349300 TGGTCAATAGCTTCCTAGTCATTTC 58.651 40.000 0.00 0.00 0.00 2.17
2412 6975 6.313519 TGGTCAATAGCTTCCTAGTCATTT 57.686 37.500 0.00 0.00 0.00 2.32
2413 6976 5.957771 TGGTCAATAGCTTCCTAGTCATT 57.042 39.130 0.00 0.00 0.00 2.57
2414 6977 6.784969 AGTATGGTCAATAGCTTCCTAGTCAT 59.215 38.462 0.00 0.00 0.00 3.06
2415 6978 6.136857 AGTATGGTCAATAGCTTCCTAGTCA 58.863 40.000 0.00 0.00 0.00 3.41
2416 6979 6.265649 TGAGTATGGTCAATAGCTTCCTAGTC 59.734 42.308 0.00 0.00 0.00 2.59
2417 6980 6.041069 GTGAGTATGGTCAATAGCTTCCTAGT 59.959 42.308 0.00 0.00 0.00 2.57
2418 6981 6.266558 AGTGAGTATGGTCAATAGCTTCCTAG 59.733 42.308 0.00 0.00 0.00 3.02
2462 7046 5.531287 ACAGTAAAAAGAGCGAAAGTCCAAT 59.469 36.000 0.00 0.00 0.00 3.16
2467 7051 4.753610 GGGTACAGTAAAAAGAGCGAAAGT 59.246 41.667 0.00 0.00 0.00 2.66
2474 7058 7.266400 GGAGTATCAGGGTACAGTAAAAAGAG 58.734 42.308 0.00 0.00 36.25 2.85
2475 7059 6.127535 CGGAGTATCAGGGTACAGTAAAAAGA 60.128 42.308 0.00 0.00 36.25 2.52
2476 7060 6.040878 CGGAGTATCAGGGTACAGTAAAAAG 58.959 44.000 0.00 0.00 36.25 2.27
2484 7068 2.750807 GCCTACGGAGTATCAGGGTACA 60.751 54.545 0.00 0.00 44.56 2.90
2500 7084 1.112950 GTACTCCCAGTCCTGCCTAC 58.887 60.000 0.00 0.00 0.00 3.18
2509 7093 5.419471 GTCAGATCTAGTTTGTACTCCCAGT 59.581 44.000 0.00 0.00 35.78 4.00
2564 7148 7.097192 AGATTACGCTTAGATGAAAGACACAA 58.903 34.615 0.00 0.00 0.00 3.33
2568 7152 8.656849 TCAAAAGATTACGCTTAGATGAAAGAC 58.343 33.333 0.00 0.00 0.00 3.01
2582 7166 7.519008 GCCCAGAGAATACATCAAAAGATTACG 60.519 40.741 0.00 0.00 0.00 3.18
2584 7168 6.772716 GGCCCAGAGAATACATCAAAAGATTA 59.227 38.462 0.00 0.00 0.00 1.75
2617 7201 3.495806 GCTTGATCGGGAAATCAGGAGAT 60.496 47.826 0.76 0.00 37.01 2.75
2649 7233 3.004839 GGCTATGCGAGATAAGTGAGACA 59.995 47.826 0.00 0.00 0.00 3.41
2655 7239 1.000163 CCACGGCTATGCGAGATAAGT 60.000 52.381 0.00 0.00 0.00 2.24
2761 7349 2.629051 GGTCAAAGGACTTGGATACGG 58.371 52.381 0.00 0.00 43.77 4.02
2781 7369 1.308998 AGTCCTTTTTGCACTGTCCG 58.691 50.000 0.00 0.00 0.00 4.79
2787 7375 4.009370 AGGAGACTAGTCCTTTTTGCAC 57.991 45.455 19.38 0.10 45.39 4.57
2800 7388 7.444487 GCCAAAGAACTTTTAGAAAGGAGACTA 59.556 37.037 5.52 0.00 42.68 2.59
2868 7460 3.426426 CCCAAAAGAAACGAAACGTGACA 60.426 43.478 0.00 0.00 39.99 3.58
2869 7461 3.103007 CCCAAAAGAAACGAAACGTGAC 58.897 45.455 0.00 0.00 39.99 3.67
2889 7481 0.877071 CAACAGATGAGTGGTGCACC 59.123 55.000 29.67 29.67 34.49 5.01
2895 7487 5.006068 CGTGATTACATCAACAGATGAGTGG 59.994 44.000 12.02 0.00 42.53 4.00
2897 7489 5.965922 TCGTGATTACATCAACAGATGAGT 58.034 37.500 12.02 0.00 42.53 3.41
2903 7495 5.496387 GCTCATTCGTGATTACATCAACAG 58.504 41.667 0.00 0.00 41.69 3.16
2911 7503 4.122776 AGTCATGGCTCATTCGTGATTAC 58.877 43.478 0.00 0.00 33.42 1.89
2922 7517 1.407299 CCATCCGAAAGTCATGGCTCA 60.407 52.381 0.00 0.00 34.15 4.26
2942 7537 3.064820 CACCCAATAAACTACGGATGCAC 59.935 47.826 0.00 0.00 0.00 4.57
2982 7577 3.070878 TGACTAGAATGCAGTGTGAACCA 59.929 43.478 0.00 0.00 0.00 3.67
3008 7603 3.181504 GCGGCAGTTACGGTAATTTCAAT 60.182 43.478 3.59 0.00 0.00 2.57
3012 7607 1.089112 GGCGGCAGTTACGGTAATTT 58.911 50.000 3.07 0.00 0.00 1.82
3030 7625 1.952621 TGGAAACTACTCCCTCTGGG 58.047 55.000 0.00 0.00 46.11 4.45
3109 7704 4.469945 TCTGGACCAGACGAAATAAAGGAT 59.530 41.667 20.74 0.00 35.39 3.24
3110 7705 3.835978 TCTGGACCAGACGAAATAAAGGA 59.164 43.478 20.74 0.00 35.39 3.36
3111 7706 4.184629 CTCTGGACCAGACGAAATAAAGG 58.815 47.826 20.74 2.94 35.39 3.11
3112 7707 4.081642 TCCTCTGGACCAGACGAAATAAAG 60.082 45.833 20.74 7.31 35.39 1.85
3113 7708 3.835978 TCCTCTGGACCAGACGAAATAAA 59.164 43.478 20.74 0.00 35.39 1.40
3114 7709 3.437213 TCCTCTGGACCAGACGAAATAA 58.563 45.455 20.74 0.00 35.39 1.40
3115 7710 3.095912 TCCTCTGGACCAGACGAAATA 57.904 47.619 20.74 0.00 35.39 1.40
3116 7711 1.938585 TCCTCTGGACCAGACGAAAT 58.061 50.000 20.74 0.00 35.39 2.17
3117 7712 1.618837 CTTCCTCTGGACCAGACGAAA 59.381 52.381 26.27 17.39 35.99 3.46
3118 7713 1.257743 CTTCCTCTGGACCAGACGAA 58.742 55.000 25.34 25.34 35.39 3.85
3119 7714 0.112606 ACTTCCTCTGGACCAGACGA 59.887 55.000 20.74 18.38 35.39 4.20
3120 7715 0.969894 AACTTCCTCTGGACCAGACG 59.030 55.000 20.74 16.33 35.39 4.18
3121 7716 3.071747 AGAAAACTTCCTCTGGACCAGAC 59.928 47.826 20.74 7.43 35.39 3.51
3122 7717 3.318313 AGAAAACTTCCTCTGGACCAGA 58.682 45.455 22.97 22.97 38.25 3.86
3123 7718 3.778954 AGAAAACTTCCTCTGGACCAG 57.221 47.619 15.99 15.99 0.00 4.00
3124 7719 4.519906 AAAGAAAACTTCCTCTGGACCA 57.480 40.909 0.00 0.00 0.00 4.02
3125 7720 6.320418 TGTTAAAAGAAAACTTCCTCTGGACC 59.680 38.462 0.00 0.00 0.00 4.46
3126 7721 7.067129 AGTGTTAAAAGAAAACTTCCTCTGGAC 59.933 37.037 0.00 0.00 0.00 4.02
3127 7722 7.116736 AGTGTTAAAAGAAAACTTCCTCTGGA 58.883 34.615 0.00 0.00 0.00 3.86
3128 7723 7.334844 AGTGTTAAAAGAAAACTTCCTCTGG 57.665 36.000 0.00 0.00 0.00 3.86
3129 7724 8.070769 GCTAGTGTTAAAAGAAAACTTCCTCTG 58.929 37.037 0.00 0.00 0.00 3.35
3130 7725 7.041984 CGCTAGTGTTAAAAGAAAACTTCCTCT 60.042 37.037 0.00 0.00 0.00 3.69
3131 7726 7.070183 CGCTAGTGTTAAAAGAAAACTTCCTC 58.930 38.462 0.00 0.00 0.00 3.71
3132 7727 6.541278 ACGCTAGTGTTAAAAGAAAACTTCCT 59.459 34.615 2.24 0.00 0.00 3.36
3133 7728 6.722301 ACGCTAGTGTTAAAAGAAAACTTCC 58.278 36.000 2.24 0.00 0.00 3.46
3134 7729 7.628235 AGACGCTAGTGTTAAAAGAAAACTTC 58.372 34.615 10.89 0.00 0.00 3.01
3135 7730 7.549615 AGACGCTAGTGTTAAAAGAAAACTT 57.450 32.000 10.89 0.00 0.00 2.66
3136 7731 7.065443 ACAAGACGCTAGTGTTAAAAGAAAACT 59.935 33.333 10.89 0.00 32.18 2.66
3137 7732 7.184779 ACAAGACGCTAGTGTTAAAAGAAAAC 58.815 34.615 10.89 0.00 32.18 2.43
3138 7733 7.311364 ACAAGACGCTAGTGTTAAAAGAAAA 57.689 32.000 10.89 0.00 32.18 2.29
3139 7734 6.018507 GGACAAGACGCTAGTGTTAAAAGAAA 60.019 38.462 10.89 0.00 32.18 2.52
3140 7735 5.464389 GGACAAGACGCTAGTGTTAAAAGAA 59.536 40.000 10.89 0.00 32.18 2.52
3141 7736 4.986659 GGACAAGACGCTAGTGTTAAAAGA 59.013 41.667 10.89 0.00 32.18 2.52
3142 7737 4.748102 TGGACAAGACGCTAGTGTTAAAAG 59.252 41.667 10.89 2.51 32.18 2.27
3143 7738 4.695396 TGGACAAGACGCTAGTGTTAAAA 58.305 39.130 10.89 0.00 32.18 1.52
3144 7739 4.038282 TCTGGACAAGACGCTAGTGTTAAA 59.962 41.667 10.89 0.00 32.18 1.52
3145 7740 3.570975 TCTGGACAAGACGCTAGTGTTAA 59.429 43.478 10.89 0.00 32.18 2.01
3146 7741 3.151554 TCTGGACAAGACGCTAGTGTTA 58.848 45.455 10.89 0.00 32.18 2.41
3147 7742 1.961394 TCTGGACAAGACGCTAGTGTT 59.039 47.619 10.89 0.00 33.82 3.32
3148 7743 1.617322 TCTGGACAAGACGCTAGTGT 58.383 50.000 9.11 9.11 0.00 3.55
3149 7744 2.425312 AGATCTGGACAAGACGCTAGTG 59.575 50.000 0.59 0.59 37.88 2.74
3150 7745 2.729194 AGATCTGGACAAGACGCTAGT 58.271 47.619 0.00 0.00 37.88 2.57
3151 7746 4.902443 TTAGATCTGGACAAGACGCTAG 57.098 45.455 5.18 0.00 37.88 3.42
3152 7747 5.854010 AATTAGATCTGGACAAGACGCTA 57.146 39.130 5.18 0.00 37.88 4.26
3153 7748 4.744795 AATTAGATCTGGACAAGACGCT 57.255 40.909 5.18 0.00 37.88 5.07
3154 7749 6.535508 AGTTAAATTAGATCTGGACAAGACGC 59.464 38.462 5.18 0.00 37.88 5.19
3155 7750 7.043986 CGAGTTAAATTAGATCTGGACAAGACG 60.044 40.741 5.18 0.00 37.88 4.18
3156 7751 7.974501 TCGAGTTAAATTAGATCTGGACAAGAC 59.025 37.037 5.18 0.00 37.88 3.01
3157 7752 8.063200 TCGAGTTAAATTAGATCTGGACAAGA 57.937 34.615 5.18 0.00 39.94 3.02
3158 7753 8.596380 GTTCGAGTTAAATTAGATCTGGACAAG 58.404 37.037 5.18 0.00 0.00 3.16
3159 7754 7.274904 CGTTCGAGTTAAATTAGATCTGGACAA 59.725 37.037 5.18 0.00 0.00 3.18
3160 7755 6.750501 CGTTCGAGTTAAATTAGATCTGGACA 59.249 38.462 5.18 0.00 0.00 4.02
3161 7756 6.750963 ACGTTCGAGTTAAATTAGATCTGGAC 59.249 38.462 5.18 0.00 0.00 4.02
3162 7757 6.860080 ACGTTCGAGTTAAATTAGATCTGGA 58.140 36.000 5.18 0.00 0.00 3.86
3163 7758 6.075519 CGACGTTCGAGTTAAATTAGATCTGG 60.076 42.308 5.18 0.00 43.74 3.86
3164 7759 6.685828 TCGACGTTCGAGTTAAATTAGATCTG 59.314 38.462 5.18 0.00 44.82 2.90
3165 7760 6.779117 TCGACGTTCGAGTTAAATTAGATCT 58.221 36.000 0.00 0.00 44.82 2.75
3180 7775 1.191944 CCATGTGATCTCGACGTTCG 58.808 55.000 0.00 0.00 42.10 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.