Multiple sequence alignment - TraesCS7B01G478700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G478700 chr7B 100.000 4664 0 0 1 4664 733749381 733754044 0.000000e+00 8613.0
1 TraesCS7B01G478700 chr7B 93.008 1659 103 8 403 2058 733360125 733358477 0.000000e+00 2409.0
2 TraesCS7B01G478700 chr7B 98.306 1240 21 0 2240 3479 733789250 733790489 0.000000e+00 2174.0
3 TraesCS7B01G478700 chr7B 93.823 1279 68 8 968 2243 733787921 733789191 0.000000e+00 1914.0
4 TraesCS7B01G478700 chr7B 97.608 418 10 0 1 418 733360801 733360384 0.000000e+00 717.0
5 TraesCS7B01G478700 chr7B 85.301 449 60 5 2950 3396 733334217 733333773 4.250000e-125 459.0
6 TraesCS7B01G478700 chr7B 89.200 250 27 0 2300 2549 733357986 733357737 3.500000e-81 313.0
7 TraesCS7B01G478700 chr7B 81.818 363 37 11 644 986 733787553 733787906 1.280000e-70 278.0
8 TraesCS7B01G478700 chr7B 95.062 81 4 0 3524 3604 733790487 733790567 1.360000e-25 128.0
9 TraesCS7B01G478700 chr7D 86.190 2223 194 48 397 2549 630712618 630714797 0.000000e+00 2300.0
10 TraesCS7B01G478700 chr7D 84.643 1973 184 53 644 2549 631023725 631025645 0.000000e+00 1855.0
11 TraesCS7B01G478700 chr7D 86.173 1620 146 33 647 2204 630328354 630326751 0.000000e+00 1679.0
12 TraesCS7B01G478700 chr7D 90.050 603 54 2 2230 2826 631613014 631613616 0.000000e+00 776.0
13 TraesCS7B01G478700 chr7D 89.043 575 35 8 397 946 631020118 631020689 0.000000e+00 688.0
14 TraesCS7B01G478700 chr7D 87.146 459 47 9 2931 3385 638682023 638681573 1.160000e-140 510.0
15 TraesCS7B01G478700 chr7D 85.973 442 54 8 2948 3385 630715058 630715495 2.540000e-127 466.0
16 TraesCS7B01G478700 chr7D 86.105 439 54 6 2950 3385 631034668 631035102 2.540000e-127 466.0
17 TraesCS7B01G478700 chr7D 80.650 615 68 32 3686 4290 638679736 638679163 3.330000e-116 429.0
18 TraesCS7B01G478700 chr7D 87.634 372 35 3 35 406 631019740 631020100 5.580000e-114 422.0
19 TraesCS7B01G478700 chr7D 87.829 304 22 8 2529 2829 638682311 638682020 4.470000e-90 342.0
20 TraesCS7B01G478700 chr7D 85.437 309 44 1 2950 3257 630325237 630324929 2.090000e-83 320.0
21 TraesCS7B01G478700 chr7D 89.600 250 26 0 2300 2549 630325746 630325497 7.530000e-83 318.0
22 TraesCS7B01G478700 chr7D 84.227 317 49 1 1 316 630329082 630328766 1.630000e-79 307.0
23 TraesCS7B01G478700 chr7D 83.912 317 50 1 1 316 631021773 631022089 7.580000e-78 302.0
24 TraesCS7B01G478700 chr7D 85.333 300 20 7 131 406 630712301 630712600 5.900000e-74 289.0
25 TraesCS7B01G478700 chr7D 92.670 191 13 1 2933 3123 631613618 631613807 1.650000e-69 274.0
26 TraesCS7B01G478700 chr7D 81.163 361 48 12 4282 4639 638678697 638678354 5.950000e-69 272.0
27 TraesCS7B01G478700 chr7D 87.437 199 20 2 2616 2814 630325477 630325284 1.690000e-54 224.0
28 TraesCS7B01G478700 chr7D 92.969 128 6 3 2823 2949 568184251 568184376 2.870000e-42 183.0
29 TraesCS7B01G478700 chr7D 87.586 145 14 1 2670 2814 631034479 631034619 1.040000e-36 165.0
30 TraesCS7B01G478700 chr7D 80.347 173 27 6 4117 4287 638676352 638676185 1.760000e-24 124.0
31 TraesCS7B01G478700 chr7D 97.917 48 1 0 1 48 631019673 631019720 2.990000e-12 84.2
32 TraesCS7B01G478700 chr7A 87.932 1707 133 27 547 2204 726859976 726858294 0.000000e+00 1943.0
33 TraesCS7B01G478700 chr7A 85.510 559 65 12 3696 4251 726855790 726855245 1.880000e-158 569.0
34 TraesCS7B01G478700 chr7A 83.236 513 58 17 2304 2814 726858223 726857737 3.310000e-121 446.0
35 TraesCS7B01G478700 chr7A 90.196 102 6 1 416 513 726891614 726891513 3.790000e-26 130.0
36 TraesCS7B01G478700 chr2D 78.002 1782 292 61 1034 2788 347791951 347793659 0.000000e+00 1027.0
37 TraesCS7B01G478700 chr2D 98.198 111 2 0 2825 2935 111321514 111321404 1.320000e-45 195.0
38 TraesCS7B01G478700 chr2D 93.496 123 8 0 2820 2942 617397745 617397867 2.870000e-42 183.0
39 TraesCS7B01G478700 chr2D 91.603 131 9 2 2808 2936 427121321 427121191 3.710000e-41 180.0
40 TraesCS7B01G478700 chr2B 85.377 848 109 13 1034 1874 412990220 412991059 0.000000e+00 865.0
41 TraesCS7B01G478700 chr2B 79.840 749 126 16 1320 2058 413062719 413063452 1.490000e-144 523.0
42 TraesCS7B01G478700 chr2B 85.043 234 29 1 996 1223 413062376 413062609 2.810000e-57 233.0
43 TraesCS7B01G478700 chr2B 98.198 111 2 0 2825 2935 43851090 43851200 1.320000e-45 195.0
44 TraesCS7B01G478700 chr2A 82.108 1034 144 23 1034 2058 461389366 461390367 0.000000e+00 846.0
45 TraesCS7B01G478700 chr6D 96.552 116 4 0 2819 2934 397359809 397359924 4.760000e-45 193.0
46 TraesCS7B01G478700 chr5D 96.522 115 4 0 2819 2933 521523684 521523798 1.710000e-44 191.0
47 TraesCS7B01G478700 chr4B 92.481 133 9 1 2825 2956 115062825 115062693 6.160000e-44 189.0
48 TraesCS7B01G478700 chr5A 76.305 249 55 3 2303 2549 569218467 569218221 3.790000e-26 130.0
49 TraesCS7B01G478700 chr1D 100.000 29 0 0 320 348 101096965 101096937 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G478700 chr7B 733749381 733754044 4663 False 8613.000000 8613 100.000000 1 4664 1 chr7B.!!$F1 4663
1 TraesCS7B01G478700 chr7B 733357737 733360801 3064 True 1146.333333 2409 93.272000 1 2549 3 chr7B.!!$R2 2548
2 TraesCS7B01G478700 chr7B 733787553 733790567 3014 False 1123.500000 2174 92.252250 644 3604 4 chr7B.!!$F2 2960
3 TraesCS7B01G478700 chr7D 630712301 630715495 3194 False 1018.333333 2300 85.832000 131 3385 3 chr7D.!!$F2 3254
4 TraesCS7B01G478700 chr7D 631019673 631025645 5972 False 670.240000 1855 88.629800 1 2549 5 chr7D.!!$F3 2548
5 TraesCS7B01G478700 chr7D 630324929 630329082 4153 True 569.600000 1679 86.574800 1 3257 5 chr7D.!!$R1 3256
6 TraesCS7B01G478700 chr7D 631613014 631613807 793 False 525.000000 776 91.360000 2230 3123 2 chr7D.!!$F5 893
7 TraesCS7B01G478700 chr7D 638676185 638682311 6126 True 335.400000 510 83.427000 2529 4639 5 chr7D.!!$R2 2110
8 TraesCS7B01G478700 chr7D 631034479 631035102 623 False 315.500000 466 86.845500 2670 3385 2 chr7D.!!$F4 715
9 TraesCS7B01G478700 chr7A 726855245 726859976 4731 True 986.000000 1943 85.559333 547 4251 3 chr7A.!!$R2 3704
10 TraesCS7B01G478700 chr2D 347791951 347793659 1708 False 1027.000000 1027 78.002000 1034 2788 1 chr2D.!!$F1 1754
11 TraesCS7B01G478700 chr2B 412990220 412991059 839 False 865.000000 865 85.377000 1034 1874 1 chr2B.!!$F2 840
12 TraesCS7B01G478700 chr2B 413062376 413063452 1076 False 378.000000 523 82.441500 996 2058 2 chr2B.!!$F3 1062
13 TraesCS7B01G478700 chr2A 461389366 461390367 1001 False 846.000000 846 82.108000 1034 2058 1 chr2A.!!$F1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.321919 TTGGACACTGCATCAGAGCC 60.322 55.000 0.29 0.49 35.18 4.70 F
1158 5006 1.218316 GGGTCATCTCGGCGAACTT 59.782 57.895 12.13 0.00 0.00 2.66 F
1285 5141 0.030195 TGGACCTCCTGGGCATCATA 60.030 55.000 0.00 0.00 45.45 2.15 F
1468 5342 0.846693 GGGGATACACTGGCCAGATT 59.153 55.000 39.19 25.34 36.63 2.40 F
1838 5718 1.133823 TCAGTTTCTTGAGGCTTGCCA 60.134 47.619 14.54 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 5089 0.602106 AGGCGCATCGATCAATGGAG 60.602 55.000 10.83 0.0 0.00 3.86 R
2910 8138 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.0 33.41 1.89 R
3280 8515 0.392193 CCCTGCACATCTCACTGGAC 60.392 60.000 0.00 0.0 0.00 4.02 R
3281 8516 0.545071 TCCCTGCACATCTCACTGGA 60.545 55.000 0.00 0.0 0.00 3.86 R
3781 10738 0.183492 AGGTGCATGTGTTGGACTGT 59.817 50.000 0.00 0.0 45.34 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.321919 TTGGACACTGCATCAGAGCC 60.322 55.000 0.29 0.49 35.18 4.70
173 208 4.971939 TGGATGTTCAGTCTTGATTCACA 58.028 39.130 0.00 0.00 32.27 3.58
281 340 4.468689 GGGTGTGCGTCCTAGCCC 62.469 72.222 0.00 0.00 36.02 5.19
299 358 3.062122 CCCGTTTTAAACTGAGGGCTA 57.938 47.619 6.27 0.00 31.58 3.93
363 422 8.868916 GCACTTCTCTCTATAAGAAAAGAGTTG 58.131 37.037 0.00 0.00 40.17 3.16
443 776 4.711399 TGGAATCAAGATGCCACTATGAG 58.289 43.478 5.63 0.00 41.61 2.90
608 987 4.509970 TGTTCAAAAGGTATGTCAGTGACG 59.490 41.667 18.17 1.04 34.95 4.35
609 988 3.659786 TCAAAAGGTATGTCAGTGACGG 58.340 45.455 18.17 0.22 34.95 4.79
642 1084 6.183360 GCAAAAAGGTTTCATTAACTTGGCAA 60.183 34.615 0.00 0.00 36.93 4.52
746 1197 9.126151 TGTTAAATGGTAATCTTGTTCTGTTCA 57.874 29.630 0.00 0.00 0.00 3.18
1158 5006 1.218316 GGGTCATCTCGGCGAACTT 59.782 57.895 12.13 0.00 0.00 2.66
1231 5079 6.012658 TCAGCTTGTTGGTATGACAATTTC 57.987 37.500 0.00 0.00 36.51 2.17
1233 5081 4.220602 AGCTTGTTGGTATGACAATTTCCC 59.779 41.667 0.00 0.00 36.51 3.97
1258 5108 0.602106 CTCCATTGATCGATGCGCCT 60.602 55.000 16.49 0.00 0.00 5.52
1278 5133 3.136626 CCTATTTAGTTGGACCTCCTGGG 59.863 52.174 0.00 0.00 41.89 4.45
1285 5141 0.030195 TGGACCTCCTGGGCATCATA 60.030 55.000 0.00 0.00 45.45 2.15
1309 5180 4.552355 TCAACTTGAATGCTTGCATTGAG 58.448 39.130 23.23 20.42 0.00 3.02
1468 5342 0.846693 GGGGATACACTGGCCAGATT 59.153 55.000 39.19 25.34 36.63 2.40
1547 5421 2.093921 TGGATGATTCCGTCGCTGTTTA 60.094 45.455 0.00 0.00 45.89 2.01
1557 5431 3.243434 CCGTCGCTGTTTATCTATGGTCT 60.243 47.826 0.00 0.00 0.00 3.85
1588 5462 1.548719 CATGTCCGGTTCCTACAGACA 59.451 52.381 0.00 0.00 40.87 3.41
1738 5618 2.978156 ACCTCACCAATGTGTCCATT 57.022 45.000 0.00 0.00 43.26 3.16
1747 5627 3.007182 CCAATGTGTCCATTTTGGCTCTT 59.993 43.478 0.00 0.00 39.28 2.85
1838 5718 1.133823 TCAGTTTCTTGAGGCTTGCCA 60.134 47.619 14.54 0.00 0.00 4.92
1891 5786 5.687780 TGAGTTCCATATGATGCAGTTCAT 58.312 37.500 3.65 7.87 39.60 2.57
2068 5994 9.190317 ACTATCAATTAGGTGAATTTCCTTTCC 57.810 33.333 8.14 0.00 35.45 3.13
2074 6000 7.906199 TTAGGTGAATTTCCTTTCCTTTCAA 57.094 32.000 8.14 0.00 36.60 2.69
2097 6278 9.967451 TCAAAATCTGTACTTGGTTTGGATATA 57.033 29.630 0.00 0.00 0.00 0.86
2326 7545 2.158957 AGCACCCGTGTATCGAATGAAT 60.159 45.455 0.00 0.00 42.86 2.57
2357 7576 4.778143 ACCGGATGCTGCCCGTTC 62.778 66.667 9.46 0.00 45.14 3.95
2724 7952 4.584743 TCCTATGTCAATCTCAGTGCGTAT 59.415 41.667 0.00 0.00 0.00 3.06
2801 8029 6.070938 GGTGGAGTGGTAAGTAATCACTAGTT 60.071 42.308 0.00 0.00 41.24 2.24
2872 8100 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
2910 8138 9.967346 TCTAGATACATTTATTTCTTGGACGAG 57.033 33.333 0.00 0.00 0.00 4.18
3176 8409 9.750125 GACCCATTATCTTTATCCATGTTTTTC 57.250 33.333 0.00 0.00 0.00 2.29
3473 9008 6.315393 TGGAAAAGAAGTTAATGCCGATAGTC 59.685 38.462 0.00 0.00 0.00 2.59
3485 9020 0.235144 CGATAGTCGGAGGTGTAGCG 59.765 60.000 0.00 0.00 36.00 4.26
3486 9021 1.590932 GATAGTCGGAGGTGTAGCGA 58.409 55.000 0.00 0.00 0.00 4.93
3487 9022 1.263752 GATAGTCGGAGGTGTAGCGAC 59.736 57.143 0.00 0.00 0.00 5.19
3594 9147 3.206964 GCATGCCTTCTAGGGTTACTTC 58.793 50.000 6.36 0.00 35.37 3.01
3669 9224 8.608185 ACCCATTTTTACTATGTCCATTTGAT 57.392 30.769 0.00 0.00 0.00 2.57
3670 9225 9.707957 ACCCATTTTTACTATGTCCATTTGATA 57.292 29.630 0.00 0.00 0.00 2.15
3732 10688 1.210155 GCCTAGTGCAAAGCAACGG 59.790 57.895 0.00 0.00 41.47 4.44
3780 10737 2.430694 CGAATCTCACCACCACTATGGA 59.569 50.000 0.84 0.00 43.02 3.41
3781 10738 3.118775 CGAATCTCACCACCACTATGGAA 60.119 47.826 0.84 0.00 43.02 3.53
3818 10775 1.682854 CCTTGTGACCTTGCAATGTGT 59.317 47.619 12.37 4.13 0.00 3.72
3840 10798 6.741358 GTGTTTTTCTACCTCGTATTTCATGC 59.259 38.462 0.00 0.00 0.00 4.06
3910 10868 0.813184 ACCTTTTCCAGCATGCATCG 59.187 50.000 21.98 7.66 31.97 3.84
3916 10876 0.034476 TCCAGCATGCATCGGATCTC 59.966 55.000 21.98 0.00 31.97 2.75
3930 10890 3.062763 CGGATCTCACCTTCATGCATAC 58.937 50.000 0.00 0.00 0.00 2.39
3934 10894 3.521560 TCTCACCTTCATGCATACGTTC 58.478 45.455 0.00 0.00 0.00 3.95
3943 10903 2.672961 TGCATACGTTCCCTTCTCAG 57.327 50.000 0.00 0.00 0.00 3.35
3952 10912 3.594134 GTTCCCTTCTCAGATGACACAG 58.406 50.000 0.00 0.00 0.00 3.66
3959 10920 1.277273 CTCAGATGACACAGAGGCCAA 59.723 52.381 5.01 0.00 0.00 4.52
3975 10936 2.609002 GGCCAAGCAACTTGTTCTTTTG 59.391 45.455 0.00 0.00 39.58 2.44
4043 11004 8.050778 TGCATGGTCTTTAAAGTTATACCTTG 57.949 34.615 22.62 22.62 36.04 3.61
4195 11157 5.354842 AGTTGTAGGAAAGGGCTATACAC 57.645 43.478 0.00 0.00 0.00 2.90
4245 14182 6.126863 AGAATCCAAGTTCAGGTATGTGAA 57.873 37.500 0.00 0.00 33.95 3.18
4251 14188 5.180117 CCAAGTTCAGGTATGTGAAGACTTG 59.820 44.000 9.83 9.83 38.76 3.16
4253 14190 6.365970 AGTTCAGGTATGTGAAGACTTGAT 57.634 37.500 0.00 0.00 37.12 2.57
4272 14209 6.440647 ACTTGATCTTAGGTGGTTAGTCATCA 59.559 38.462 0.00 0.00 0.00 3.07
4273 14210 6.867519 TGATCTTAGGTGGTTAGTCATCAA 57.132 37.500 0.00 0.00 0.00 2.57
4281 14218 7.839680 AGGTGGTTAGTCATCAAAAGAAAAT 57.160 32.000 0.00 0.00 0.00 1.82
4282 14219 7.661040 AGGTGGTTAGTCATCAAAAGAAAATG 58.339 34.615 0.00 0.00 0.00 2.32
4283 14220 7.287696 AGGTGGTTAGTCATCAAAAGAAAATGT 59.712 33.333 0.00 0.00 0.00 2.71
4284 14221 7.926018 GGTGGTTAGTCATCAAAAGAAAATGTT 59.074 33.333 0.00 0.00 0.00 2.71
4285 14222 8.968242 GTGGTTAGTCATCAAAAGAAAATGTTC 58.032 33.333 0.00 0.00 0.00 3.18
4286 14223 8.912988 TGGTTAGTCATCAAAAGAAAATGTTCT 58.087 29.630 0.00 0.00 46.47 3.01
4287 14224 9.185192 GGTTAGTCATCAAAAGAAAATGTTCTG 57.815 33.333 0.00 0.00 43.59 3.02
4288 14225 9.950680 GTTAGTCATCAAAAGAAAATGTTCTGA 57.049 29.630 0.00 0.00 43.59 3.27
4289 14226 9.950680 TTAGTCATCAAAAGAAAATGTTCTGAC 57.049 29.630 0.00 2.38 43.59 3.51
4290 14227 7.999679 AGTCATCAAAAGAAAATGTTCTGACA 58.000 30.769 13.13 0.00 43.59 3.58
4292 14229 8.697067 GTCATCAAAAGAAAATGTTCTGACATG 58.303 33.333 0.00 0.62 45.58 3.21
4293 14230 8.415553 TCATCAAAAGAAAATGTTCTGACATGT 58.584 29.630 0.00 0.00 45.58 3.21
4294 14231 9.037737 CATCAAAAGAAAATGTTCTGACATGTT 57.962 29.630 0.00 0.00 45.58 2.71
4295 14232 8.410030 TCAAAAGAAAATGTTCTGACATGTTG 57.590 30.769 0.00 0.00 45.58 3.33
4296 14233 8.249638 TCAAAAGAAAATGTTCTGACATGTTGA 58.750 29.630 0.00 0.00 45.58 3.18
4297 14234 9.037737 CAAAAGAAAATGTTCTGACATGTTGAT 57.962 29.630 0.00 0.00 45.58 2.57
4298 14235 9.603921 AAAAGAAAATGTTCTGACATGTTGATT 57.396 25.926 0.00 0.00 45.58 2.57
4299 14236 8.583810 AAGAAAATGTTCTGACATGTTGATTG 57.416 30.769 0.00 0.00 45.58 2.67
4300 14237 7.719483 AGAAAATGTTCTGACATGTTGATTGT 58.281 30.769 0.00 0.00 45.58 2.71
4301 14238 8.199449 AGAAAATGTTCTGACATGTTGATTGTT 58.801 29.630 0.00 0.00 45.58 2.83
4302 14239 7.703298 AAATGTTCTGACATGTTGATTGTTG 57.297 32.000 0.00 0.00 45.58 3.33
4303 14240 6.638096 ATGTTCTGACATGTTGATTGTTGA 57.362 33.333 0.00 0.00 44.64 3.18
4304 14241 6.448207 TGTTCTGACATGTTGATTGTTGAA 57.552 33.333 0.00 0.00 0.00 2.69
4305 14242 7.041635 TGTTCTGACATGTTGATTGTTGAAT 57.958 32.000 0.00 0.00 0.00 2.57
4306 14243 7.490840 TGTTCTGACATGTTGATTGTTGAATT 58.509 30.769 0.00 0.00 0.00 2.17
4307 14244 8.628280 TGTTCTGACATGTTGATTGTTGAATTA 58.372 29.630 0.00 0.00 0.00 1.40
4308 14245 9.630098 GTTCTGACATGTTGATTGTTGAATTAT 57.370 29.630 0.00 0.00 0.00 1.28
4312 14249 9.761504 TGACATGTTGATTGTTGAATTATTTGT 57.238 25.926 0.00 0.00 0.00 2.83
4314 14251 8.497554 ACATGTTGATTGTTGAATTATTTGTGC 58.502 29.630 0.00 0.00 0.00 4.57
4315 14252 8.714179 CATGTTGATTGTTGAATTATTTGTGCT 58.286 29.630 0.00 0.00 0.00 4.40
4316 14253 8.296799 TGTTGATTGTTGAATTATTTGTGCTC 57.703 30.769 0.00 0.00 0.00 4.26
4317 14254 7.924947 TGTTGATTGTTGAATTATTTGTGCTCA 59.075 29.630 0.00 0.00 0.00 4.26
4318 14255 8.763356 GTTGATTGTTGAATTATTTGTGCTCAA 58.237 29.630 0.00 0.00 0.00 3.02
4319 14256 9.491675 TTGATTGTTGAATTATTTGTGCTCAAT 57.508 25.926 1.43 0.00 33.32 2.57
4335 14272 9.926158 TTGTGCTCAATATTTATTGTTGAATGT 57.074 25.926 9.50 0.00 42.70 2.71
4336 14273 9.356433 TGTGCTCAATATTTATTGTTGAATGTG 57.644 29.630 9.50 0.00 42.70 3.21
4337 14274 9.357652 GTGCTCAATATTTATTGTTGAATGTGT 57.642 29.630 9.50 0.00 42.70 3.72
4338 14275 9.356433 TGCTCAATATTTATTGTTGAATGTGTG 57.644 29.630 9.50 0.00 42.70 3.82
4339 14276 8.810427 GCTCAATATTTATTGTTGAATGTGTGG 58.190 33.333 9.50 0.00 42.70 4.17
4346 14283 9.775854 ATTTATTGTTGAATGTGTGGAAAATGA 57.224 25.926 0.00 0.00 0.00 2.57
4347 14284 9.775854 TTTATTGTTGAATGTGTGGAAAATGAT 57.224 25.926 0.00 0.00 0.00 2.45
4348 14285 7.661127 ATTGTTGAATGTGTGGAAAATGATG 57.339 32.000 0.00 0.00 0.00 3.07
4349 14286 6.402456 TGTTGAATGTGTGGAAAATGATGA 57.598 33.333 0.00 0.00 0.00 2.92
4350 14287 6.814043 TGTTGAATGTGTGGAAAATGATGAA 58.186 32.000 0.00 0.00 0.00 2.57
4351 14288 7.270779 TGTTGAATGTGTGGAAAATGATGAAA 58.729 30.769 0.00 0.00 0.00 2.69
4352 14289 7.767659 TGTTGAATGTGTGGAAAATGATGAAAA 59.232 29.630 0.00 0.00 0.00 2.29
4353 14290 8.776470 GTTGAATGTGTGGAAAATGATGAAAAT 58.224 29.630 0.00 0.00 0.00 1.82
4354 14291 9.993454 TTGAATGTGTGGAAAATGATGAAAATA 57.007 25.926 0.00 0.00 0.00 1.40
4358 14295 8.254178 TGTGTGGAAAATGATGAAAATATTGC 57.746 30.769 0.00 0.00 0.00 3.56
4359 14296 7.876582 TGTGTGGAAAATGATGAAAATATTGCA 59.123 29.630 0.00 0.00 0.00 4.08
4360 14297 8.719648 GTGTGGAAAATGATGAAAATATTGCAA 58.280 29.630 0.00 0.00 0.00 4.08
4361 14298 9.281371 TGTGGAAAATGATGAAAATATTGCAAA 57.719 25.926 1.71 0.00 0.00 3.68
4368 14305 8.907222 ATGATGAAAATATTGCAAAATACCCC 57.093 30.769 1.71 0.00 0.00 4.95
4369 14306 7.278875 TGATGAAAATATTGCAAAATACCCCC 58.721 34.615 1.71 0.00 0.00 5.40
4396 14333 3.731136 CGGTATCGGGCATGTTGG 58.269 61.111 0.00 0.00 0.00 3.77
4397 14334 1.891919 CGGTATCGGGCATGTTGGG 60.892 63.158 0.00 0.00 0.00 4.12
4398 14335 1.529796 GGTATCGGGCATGTTGGGA 59.470 57.895 0.00 0.00 0.00 4.37
4399 14336 0.535102 GGTATCGGGCATGTTGGGAG 60.535 60.000 0.00 0.00 0.00 4.30
4400 14337 0.180406 GTATCGGGCATGTTGGGAGT 59.820 55.000 0.00 0.00 0.00 3.85
4401 14338 0.180171 TATCGGGCATGTTGGGAGTG 59.820 55.000 0.00 0.00 0.00 3.51
4402 14339 2.556840 ATCGGGCATGTTGGGAGTGG 62.557 60.000 0.00 0.00 0.00 4.00
4403 14340 2.763215 GGGCATGTTGGGAGTGGA 59.237 61.111 0.00 0.00 0.00 4.02
4404 14341 1.379044 GGGCATGTTGGGAGTGGAG 60.379 63.158 0.00 0.00 0.00 3.86
4405 14342 1.685224 GGCATGTTGGGAGTGGAGA 59.315 57.895 0.00 0.00 0.00 3.71
4406 14343 0.038166 GGCATGTTGGGAGTGGAGAA 59.962 55.000 0.00 0.00 0.00 2.87
4407 14344 1.547675 GGCATGTTGGGAGTGGAGAAA 60.548 52.381 0.00 0.00 0.00 2.52
4408 14345 2.450476 GCATGTTGGGAGTGGAGAAAT 58.550 47.619 0.00 0.00 0.00 2.17
4409 14346 2.165030 GCATGTTGGGAGTGGAGAAATG 59.835 50.000 0.00 0.00 0.00 2.32
4410 14347 2.584835 TGTTGGGAGTGGAGAAATGG 57.415 50.000 0.00 0.00 0.00 3.16
4411 14348 1.075374 TGTTGGGAGTGGAGAAATGGG 59.925 52.381 0.00 0.00 0.00 4.00
4412 14349 0.704076 TTGGGAGTGGAGAAATGGGG 59.296 55.000 0.00 0.00 0.00 4.96
4413 14350 1.214305 TGGGAGTGGAGAAATGGGGG 61.214 60.000 0.00 0.00 0.00 5.40
4414 14351 1.076705 GGAGTGGAGAAATGGGGGC 60.077 63.158 0.00 0.00 0.00 5.80
4415 14352 1.076705 GAGTGGAGAAATGGGGGCC 60.077 63.158 0.00 0.00 0.00 5.80
4416 14353 1.856873 AGTGGAGAAATGGGGGCCA 60.857 57.895 4.39 0.00 38.19 5.36
4417 14354 1.682344 GTGGAGAAATGGGGGCCAC 60.682 63.158 4.39 0.17 41.77 5.01
4418 14355 2.042944 GGAGAAATGGGGGCCACC 60.043 66.667 20.63 20.63 35.80 4.61
4419 14356 2.770130 GAGAAATGGGGGCCACCA 59.230 61.111 33.68 33.68 46.24 4.17
4462 14399 3.934457 AAAAATAGGGTTTGTCTGCGG 57.066 42.857 0.00 0.00 0.00 5.69
4463 14400 2.871096 AAATAGGGTTTGTCTGCGGA 57.129 45.000 0.00 0.00 0.00 5.54
4464 14401 2.109425 AATAGGGTTTGTCTGCGGAC 57.891 50.000 19.20 19.20 42.42 4.79
4488 14425 4.657436 GTCCACGGACATAGAGAAGAAT 57.343 45.455 11.43 0.00 44.02 2.40
4489 14426 5.769484 GTCCACGGACATAGAGAAGAATA 57.231 43.478 11.43 0.00 44.02 1.75
4490 14427 6.334102 GTCCACGGACATAGAGAAGAATAT 57.666 41.667 11.43 0.00 44.02 1.28
4491 14428 6.153067 GTCCACGGACATAGAGAAGAATATG 58.847 44.000 11.43 0.00 44.02 1.78
4492 14429 5.833667 TCCACGGACATAGAGAAGAATATGT 59.166 40.000 0.00 0.00 43.54 2.29
4493 14430 5.923114 CCACGGACATAGAGAAGAATATGTG 59.077 44.000 2.76 0.00 41.51 3.21
4494 14431 6.239036 CCACGGACATAGAGAAGAATATGTGA 60.239 42.308 2.76 0.00 41.51 3.58
4495 14432 6.638873 CACGGACATAGAGAAGAATATGTGAC 59.361 42.308 2.76 0.00 41.51 3.67
4496 14433 6.321435 ACGGACATAGAGAAGAATATGTGACA 59.679 38.462 2.76 0.00 41.51 3.58
4497 14434 6.638873 CGGACATAGAGAAGAATATGTGACAC 59.361 42.308 0.00 0.00 41.51 3.67
4498 14435 7.469318 CGGACATAGAGAAGAATATGTGACACT 60.469 40.741 7.20 0.00 41.51 3.55
4499 14436 7.865385 GGACATAGAGAAGAATATGTGACACTC 59.135 40.741 7.20 0.00 41.51 3.51
4500 14437 8.298729 ACATAGAGAAGAATATGTGACACTCA 57.701 34.615 7.20 0.00 40.29 3.41
4501 14438 8.753133 ACATAGAGAAGAATATGTGACACTCAA 58.247 33.333 7.20 0.00 40.29 3.02
4502 14439 9.029243 CATAGAGAAGAATATGTGACACTCAAC 57.971 37.037 7.20 0.00 0.00 3.18
4503 14440 6.402222 AGAGAAGAATATGTGACACTCAACC 58.598 40.000 7.20 0.00 0.00 3.77
4504 14441 6.014242 AGAGAAGAATATGTGACACTCAACCA 60.014 38.462 7.20 0.00 0.00 3.67
4505 14442 6.715280 AGAAGAATATGTGACACTCAACCAT 58.285 36.000 7.20 0.00 0.00 3.55
4506 14443 7.170965 AGAAGAATATGTGACACTCAACCATT 58.829 34.615 7.20 0.00 0.00 3.16
4507 14444 8.321353 AGAAGAATATGTGACACTCAACCATTA 58.679 33.333 7.20 0.00 0.00 1.90
4508 14445 8.498054 AAGAATATGTGACACTCAACCATTAG 57.502 34.615 7.20 0.00 0.00 1.73
4509 14446 7.851228 AGAATATGTGACACTCAACCATTAGA 58.149 34.615 7.20 0.00 0.00 2.10
4510 14447 7.984050 AGAATATGTGACACTCAACCATTAGAG 59.016 37.037 7.20 0.00 37.87 2.43
4511 14448 5.745312 ATGTGACACTCAACCATTAGAGA 57.255 39.130 7.20 0.00 35.83 3.10
4512 14449 5.745312 TGTGACACTCAACCATTAGAGAT 57.255 39.130 7.20 0.00 35.83 2.75
4513 14450 5.482006 TGTGACACTCAACCATTAGAGATG 58.518 41.667 7.20 0.00 35.83 2.90
4514 14451 4.331168 GTGACACTCAACCATTAGAGATGC 59.669 45.833 0.00 0.00 35.83 3.91
4515 14452 3.873952 GACACTCAACCATTAGAGATGCC 59.126 47.826 0.00 0.00 35.83 4.40
4516 14453 3.209410 CACTCAACCATTAGAGATGCCC 58.791 50.000 0.00 0.00 35.83 5.36
4517 14454 3.118112 CACTCAACCATTAGAGATGCCCT 60.118 47.826 0.00 0.00 35.83 5.19
4518 14455 4.101585 CACTCAACCATTAGAGATGCCCTA 59.898 45.833 0.00 0.00 35.83 3.53
4519 14456 4.721776 ACTCAACCATTAGAGATGCCCTAA 59.278 41.667 0.00 0.00 35.83 2.69
4520 14457 5.163258 ACTCAACCATTAGAGATGCCCTAAG 60.163 44.000 0.00 0.00 35.83 2.18
4521 14458 3.778954 ACCATTAGAGATGCCCTAAGC 57.221 47.619 0.00 0.00 44.14 3.09
4532 14469 2.605837 GCCCTAAGCAACTCCTAGAC 57.394 55.000 0.00 0.00 42.97 2.59
4533 14470 1.202428 GCCCTAAGCAACTCCTAGACG 60.202 57.143 0.00 0.00 42.97 4.18
4534 14471 2.376109 CCCTAAGCAACTCCTAGACGA 58.624 52.381 0.00 0.00 0.00 4.20
4535 14472 2.959707 CCCTAAGCAACTCCTAGACGAT 59.040 50.000 0.00 0.00 0.00 3.73
4536 14473 3.004944 CCCTAAGCAACTCCTAGACGATC 59.995 52.174 0.00 0.00 0.00 3.69
4537 14474 3.632604 CCTAAGCAACTCCTAGACGATCA 59.367 47.826 0.00 0.00 0.00 2.92
4538 14475 4.279671 CCTAAGCAACTCCTAGACGATCAT 59.720 45.833 0.00 0.00 0.00 2.45
4539 14476 4.314740 AAGCAACTCCTAGACGATCATC 57.685 45.455 0.00 0.00 0.00 2.92
4540 14477 3.561143 AGCAACTCCTAGACGATCATCT 58.439 45.455 0.00 0.00 0.00 2.90
4541 14478 3.568007 AGCAACTCCTAGACGATCATCTC 59.432 47.826 0.00 0.00 0.00 2.75
4542 14479 3.568007 GCAACTCCTAGACGATCATCTCT 59.432 47.826 0.00 0.00 0.00 3.10
4543 14480 4.757657 GCAACTCCTAGACGATCATCTCTA 59.242 45.833 0.00 0.00 0.00 2.43
4544 14481 5.106712 GCAACTCCTAGACGATCATCTCTAG 60.107 48.000 0.00 3.58 37.01 2.43
4545 14482 5.818678 ACTCCTAGACGATCATCTCTAGT 57.181 43.478 14.86 0.00 35.94 2.57
4546 14483 6.182507 ACTCCTAGACGATCATCTCTAGTT 57.817 41.667 14.86 3.10 35.94 2.24
4547 14484 5.995282 ACTCCTAGACGATCATCTCTAGTTG 59.005 44.000 14.86 11.15 35.94 3.16
4548 14485 5.931294 TCCTAGACGATCATCTCTAGTTGT 58.069 41.667 14.86 0.00 35.94 3.32
4549 14486 6.358178 TCCTAGACGATCATCTCTAGTTGTT 58.642 40.000 14.86 0.00 35.94 2.83
4550 14487 6.261158 TCCTAGACGATCATCTCTAGTTGTTG 59.739 42.308 14.86 5.16 35.94 3.33
4551 14488 5.906113 AGACGATCATCTCTAGTTGTTGT 57.094 39.130 0.00 0.00 0.00 3.32
4552 14489 6.274157 AGACGATCATCTCTAGTTGTTGTT 57.726 37.500 0.00 0.00 0.00 2.83
4553 14490 6.326375 AGACGATCATCTCTAGTTGTTGTTC 58.674 40.000 0.00 0.00 0.00 3.18
4554 14491 5.411781 ACGATCATCTCTAGTTGTTGTTCC 58.588 41.667 0.00 0.00 0.00 3.62
4555 14492 5.047306 ACGATCATCTCTAGTTGTTGTTCCA 60.047 40.000 0.00 0.00 0.00 3.53
4556 14493 6.045318 CGATCATCTCTAGTTGTTGTTCCAT 58.955 40.000 0.00 0.00 0.00 3.41
4557 14494 6.019237 CGATCATCTCTAGTTGTTGTTCCATG 60.019 42.308 0.00 0.00 0.00 3.66
4558 14495 4.937620 TCATCTCTAGTTGTTGTTCCATGC 59.062 41.667 0.00 0.00 0.00 4.06
4559 14496 3.674997 TCTCTAGTTGTTGTTCCATGCC 58.325 45.455 0.00 0.00 0.00 4.40
4560 14497 3.072330 TCTCTAGTTGTTGTTCCATGCCA 59.928 43.478 0.00 0.00 0.00 4.92
4561 14498 3.146066 TCTAGTTGTTGTTCCATGCCAC 58.854 45.455 0.00 0.00 0.00 5.01
4562 14499 2.071778 AGTTGTTGTTCCATGCCACT 57.928 45.000 0.00 0.00 0.00 4.00
4563 14500 3.222173 AGTTGTTGTTCCATGCCACTA 57.778 42.857 0.00 0.00 0.00 2.74
4564 14501 3.149196 AGTTGTTGTTCCATGCCACTAG 58.851 45.455 0.00 0.00 0.00 2.57
4565 14502 2.884639 GTTGTTGTTCCATGCCACTAGT 59.115 45.455 0.00 0.00 0.00 2.57
4566 14503 4.069304 GTTGTTGTTCCATGCCACTAGTA 58.931 43.478 0.00 0.00 0.00 1.82
4567 14504 3.670625 TGTTGTTCCATGCCACTAGTAC 58.329 45.455 0.00 0.00 0.00 2.73
4568 14505 3.007635 GTTGTTCCATGCCACTAGTACC 58.992 50.000 0.00 0.00 0.00 3.34
4569 14506 2.546899 TGTTCCATGCCACTAGTACCT 58.453 47.619 0.00 0.00 0.00 3.08
4570 14507 3.715287 TGTTCCATGCCACTAGTACCTA 58.285 45.455 0.00 0.00 0.00 3.08
4571 14508 3.449737 TGTTCCATGCCACTAGTACCTAC 59.550 47.826 0.00 0.00 0.00 3.18
4572 14509 3.682592 TCCATGCCACTAGTACCTACT 57.317 47.619 0.00 0.00 40.24 2.57
4573 14510 3.563223 TCCATGCCACTAGTACCTACTC 58.437 50.000 0.00 0.00 37.73 2.59
4574 14511 2.293677 CCATGCCACTAGTACCTACTCG 59.706 54.545 0.00 0.00 37.73 4.18
4575 14512 2.795231 TGCCACTAGTACCTACTCGT 57.205 50.000 0.00 0.00 37.73 4.18
4576 14513 3.912496 TGCCACTAGTACCTACTCGTA 57.088 47.619 0.00 0.00 37.73 3.43
4577 14514 4.220693 TGCCACTAGTACCTACTCGTAA 57.779 45.455 0.00 0.00 37.73 3.18
4578 14515 4.785301 TGCCACTAGTACCTACTCGTAAT 58.215 43.478 0.00 0.00 37.73 1.89
4579 14516 5.928976 TGCCACTAGTACCTACTCGTAATA 58.071 41.667 0.00 0.00 37.73 0.98
4580 14517 6.537355 TGCCACTAGTACCTACTCGTAATAT 58.463 40.000 0.00 0.00 37.73 1.28
4581 14518 7.000472 TGCCACTAGTACCTACTCGTAATATT 59.000 38.462 0.00 0.00 37.73 1.28
4582 14519 7.503566 TGCCACTAGTACCTACTCGTAATATTT 59.496 37.037 0.00 0.00 37.73 1.40
4583 14520 8.020244 GCCACTAGTACCTACTCGTAATATTTC 58.980 40.741 0.00 0.00 37.73 2.17
4584 14521 9.060347 CCACTAGTACCTACTCGTAATATTTCA 57.940 37.037 0.00 0.00 37.73 2.69
4603 14540 9.866655 ATATTTCATATGCTTAGGAAAAGACCA 57.133 29.630 19.23 7.00 40.36 4.02
4604 14541 7.630242 TTTCATATGCTTAGGAAAAGACCAG 57.370 36.000 14.73 0.00 35.73 4.00
4605 14542 6.560003 TCATATGCTTAGGAAAAGACCAGA 57.440 37.500 0.00 0.00 0.00 3.86
4606 14543 7.141758 TCATATGCTTAGGAAAAGACCAGAT 57.858 36.000 0.00 0.00 0.00 2.90
4607 14544 7.220030 TCATATGCTTAGGAAAAGACCAGATC 58.780 38.462 0.00 0.00 0.00 2.75
4608 14545 3.861840 TGCTTAGGAAAAGACCAGATCG 58.138 45.455 0.00 0.00 0.00 3.69
4609 14546 3.198872 GCTTAGGAAAAGACCAGATCGG 58.801 50.000 2.55 2.55 42.50 4.18
4610 14547 3.118738 GCTTAGGAAAAGACCAGATCGGA 60.119 47.826 10.05 0.00 38.63 4.55
4611 14548 4.623171 GCTTAGGAAAAGACCAGATCGGAA 60.623 45.833 10.05 0.00 38.63 4.30
4612 14549 5.488341 CTTAGGAAAAGACCAGATCGGAAA 58.512 41.667 10.05 0.00 38.63 3.13
4613 14550 4.576330 AGGAAAAGACCAGATCGGAAAT 57.424 40.909 10.05 0.00 38.63 2.17
4614 14551 5.693769 AGGAAAAGACCAGATCGGAAATA 57.306 39.130 10.05 0.00 38.63 1.40
4615 14552 5.429130 AGGAAAAGACCAGATCGGAAATAC 58.571 41.667 10.05 0.00 38.63 1.89
4616 14553 5.189934 AGGAAAAGACCAGATCGGAAATACT 59.810 40.000 10.05 0.00 38.63 2.12
4617 14554 6.383147 AGGAAAAGACCAGATCGGAAATACTA 59.617 38.462 10.05 0.00 38.63 1.82
4618 14555 7.071321 AGGAAAAGACCAGATCGGAAATACTAT 59.929 37.037 10.05 0.00 38.63 2.12
4619 14556 7.171678 GGAAAAGACCAGATCGGAAATACTATG 59.828 40.741 10.05 0.00 38.63 2.23
4620 14557 6.732896 AAGACCAGATCGGAAATACTATGT 57.267 37.500 10.05 0.00 38.63 2.29
4621 14558 6.090483 AGACCAGATCGGAAATACTATGTG 57.910 41.667 10.05 0.00 38.63 3.21
4622 14559 5.598830 AGACCAGATCGGAAATACTATGTGT 59.401 40.000 10.05 0.00 38.63 3.72
4623 14560 5.601662 ACCAGATCGGAAATACTATGTGTG 58.398 41.667 10.05 0.00 38.63 3.82
4624 14561 5.362717 ACCAGATCGGAAATACTATGTGTGA 59.637 40.000 10.05 0.00 38.63 3.58
4625 14562 6.127168 ACCAGATCGGAAATACTATGTGTGAA 60.127 38.462 10.05 0.00 38.63 3.18
4626 14563 6.422100 CCAGATCGGAAATACTATGTGTGAAG 59.578 42.308 0.00 0.00 36.56 3.02
4627 14564 7.203218 CAGATCGGAAATACTATGTGTGAAGA 58.797 38.462 0.00 0.00 0.00 2.87
4628 14565 7.869937 CAGATCGGAAATACTATGTGTGAAGAT 59.130 37.037 0.00 0.00 0.00 2.40
4629 14566 8.424918 AGATCGGAAATACTATGTGTGAAGATT 58.575 33.333 0.00 0.00 0.00 2.40
4630 14567 8.964476 ATCGGAAATACTATGTGTGAAGATTT 57.036 30.769 0.00 0.00 0.00 2.17
4632 14569 9.309516 TCGGAAATACTATGTGTGAAGATTTAC 57.690 33.333 0.00 0.00 0.00 2.01
4633 14570 9.314321 CGGAAATACTATGTGTGAAGATTTACT 57.686 33.333 0.00 0.00 0.00 2.24
4640 14577 8.883731 ACTATGTGTGAAGATTTACTATGCAAC 58.116 33.333 0.00 0.00 0.00 4.17
4641 14578 6.164408 TGTGTGAAGATTTACTATGCAACG 57.836 37.500 0.00 0.00 0.00 4.10
4642 14579 5.121611 TGTGTGAAGATTTACTATGCAACGG 59.878 40.000 0.00 0.00 0.00 4.44
4643 14580 5.350365 GTGTGAAGATTTACTATGCAACGGA 59.650 40.000 0.00 0.00 0.00 4.69
4644 14581 6.037172 GTGTGAAGATTTACTATGCAACGGAT 59.963 38.462 0.00 0.00 0.00 4.18
4645 14582 6.257849 TGTGAAGATTTACTATGCAACGGATC 59.742 38.462 0.00 0.00 0.00 3.36
4646 14583 5.758296 TGAAGATTTACTATGCAACGGATCC 59.242 40.000 0.00 0.00 0.00 3.36
4647 14584 4.307432 AGATTTACTATGCAACGGATCCG 58.693 43.478 32.20 32.20 46.03 4.18
4648 14585 1.860676 TTACTATGCAACGGATCCGC 58.139 50.000 33.62 18.20 44.19 5.54
4649 14586 0.747852 TACTATGCAACGGATCCGCA 59.252 50.000 33.62 23.34 44.19 5.69
4650 14587 0.107897 ACTATGCAACGGATCCGCAA 60.108 50.000 33.62 16.85 44.19 4.85
4651 14588 1.013596 CTATGCAACGGATCCGCAAA 58.986 50.000 33.62 17.22 44.19 3.68
4652 14589 1.603802 CTATGCAACGGATCCGCAAAT 59.396 47.619 33.62 22.40 44.19 2.32
4653 14590 0.817013 ATGCAACGGATCCGCAAATT 59.183 45.000 33.62 17.67 44.19 1.82
4654 14591 0.600557 TGCAACGGATCCGCAAATTT 59.399 45.000 33.62 17.27 44.19 1.82
4655 14592 0.991344 GCAACGGATCCGCAAATTTG 59.009 50.000 33.62 27.52 44.19 2.32
4656 14593 1.668628 GCAACGGATCCGCAAATTTGT 60.669 47.619 33.62 9.08 44.19 2.83
4657 14594 2.414824 GCAACGGATCCGCAAATTTGTA 60.415 45.455 33.62 6.30 44.19 2.41
4658 14595 3.168193 CAACGGATCCGCAAATTTGTAC 58.832 45.455 33.62 3.10 44.19 2.90
4659 14596 2.706890 ACGGATCCGCAAATTTGTACT 58.293 42.857 33.62 6.88 44.19 2.73
4660 14597 2.676342 ACGGATCCGCAAATTTGTACTC 59.324 45.455 33.62 10.71 44.19 2.59
4661 14598 2.675844 CGGATCCGCAAATTTGTACTCA 59.324 45.455 23.37 0.69 0.00 3.41
4662 14599 3.485216 CGGATCCGCAAATTTGTACTCAC 60.485 47.826 23.37 7.28 0.00 3.51
4663 14600 3.438781 GGATCCGCAAATTTGTACTCACA 59.561 43.478 19.03 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.847706 CAAGGCATAATCTACACTACTATACAG 57.152 37.037 0.00 0.00 0.00 2.74
173 208 0.106819 GCCTGAATCATCCTGCCACT 60.107 55.000 0.00 0.00 0.00 4.00
380 439 0.532862 AAACCAGACACCGCTGAGTG 60.533 55.000 0.00 0.00 43.65 3.51
381 440 0.180406 AAAACCAGACACCGCTGAGT 59.820 50.000 0.00 0.00 38.14 3.41
443 776 8.745464 TGATTAGTACCCGCAAAATTAAAAAC 57.255 30.769 0.00 0.00 0.00 2.43
608 987 0.180171 AACCTTTTTGCCCACTTGCC 59.820 50.000 0.00 0.00 0.00 4.52
609 988 1.939934 GAAACCTTTTTGCCCACTTGC 59.060 47.619 0.00 0.00 0.00 4.01
642 1084 6.152323 AGCATGATGAAAGTTAGAAGCACATT 59.848 34.615 0.00 0.00 0.00 2.71
743 1194 7.812191 GTGGACAATTAACAATACATGCTTGAA 59.188 33.333 13.82 1.74 0.00 2.69
746 1197 6.437162 AGGTGGACAATTAACAATACATGCTT 59.563 34.615 0.00 0.00 0.00 3.91
1206 5054 6.594788 AATTGTCATACCAACAAGCTGAAT 57.405 33.333 0.00 0.00 39.78 2.57
1233 5081 2.775890 CATCGATCAATGGAGAAGGGG 58.224 52.381 0.00 0.00 0.00 4.79
1239 5089 0.602106 AGGCGCATCGATCAATGGAG 60.602 55.000 10.83 0.00 0.00 3.86
1258 5108 2.508300 GCCCAGGAGGTCCAACTAAATA 59.492 50.000 0.00 0.00 38.89 1.40
1278 5133 6.292168 GCAAGCATTCAAGTTGATTATGATGC 60.292 38.462 23.12 23.12 30.03 3.91
1285 5141 5.543714 TCAATGCAAGCATTCAAGTTGATT 58.456 33.333 16.75 0.00 43.92 2.57
1309 5180 0.669318 TCGACATGCCGGACTGAAAC 60.669 55.000 5.05 0.00 0.00 2.78
1468 5342 3.541632 GTCCTGTCCAAACAACAGAAGA 58.458 45.455 4.89 0.00 45.64 2.87
1547 5421 1.474677 GCACTGCAGCAGACCATAGAT 60.475 52.381 29.70 0.06 35.18 1.98
1557 5431 2.674033 GGACATGGCACTGCAGCA 60.674 61.111 15.27 4.00 35.83 4.41
1588 5462 1.983224 CGGGAGGACCATGTTCTGT 59.017 57.895 0.00 0.00 40.22 3.41
1738 5618 3.009473 AGAGCCTGATGTAAAGAGCCAAA 59.991 43.478 0.00 0.00 0.00 3.28
1747 5627 2.050144 GATGGGGAGAGCCTGATGTAA 58.950 52.381 0.00 0.00 0.00 2.41
1790 5670 2.471255 GGAATGCCTCCGTTGACAG 58.529 57.895 0.00 0.00 33.37 3.51
1838 5718 1.838611 ACCATAAGGGCTGATGGGAT 58.161 50.000 14.46 0.00 45.94 3.85
1891 5786 5.426689 ACTAGAGATGGAAAATCTGCACA 57.573 39.130 0.00 0.00 0.00 4.57
1994 5894 3.378427 GCAGAAATCCGGAAGCAAGTATT 59.622 43.478 9.01 0.00 0.00 1.89
2068 5994 7.488322 TCCAAACCAAGTACAGATTTTGAAAG 58.512 34.615 10.09 0.00 0.00 2.62
2112 6293 7.011950 CAGGAAATTCAACCGCATGTTACTATA 59.988 37.037 0.00 0.00 34.69 1.31
2326 7545 2.642254 CCGGTCGTCCAGCACCTAA 61.642 63.158 0.00 0.00 0.00 2.69
2357 7576 3.094062 ATGATCACCTGGGTCGCCG 62.094 63.158 0.00 0.00 0.00 6.46
2910 8138 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2967 8195 5.351948 TCGAGGTTTCATCATGTCCAATA 57.648 39.130 0.00 0.00 0.00 1.90
2969 8197 3.694043 TCGAGGTTTCATCATGTCCAA 57.306 42.857 0.00 0.00 0.00 3.53
3176 8409 4.335594 CCTTCGAAGCCTACCAAATTAAGG 59.664 45.833 19.99 0.00 0.00 2.69
3279 8514 0.738762 CCTGCACATCTCACTGGACG 60.739 60.000 0.00 0.00 0.00 4.79
3280 8515 0.392193 CCCTGCACATCTCACTGGAC 60.392 60.000 0.00 0.00 0.00 4.02
3281 8516 0.545071 TCCCTGCACATCTCACTGGA 60.545 55.000 0.00 0.00 0.00 3.86
3405 8872 3.167485 TCCTCACCCATAGTTACAACGT 58.833 45.455 0.00 0.00 0.00 3.99
3473 9008 1.226323 CTTCGTCGCTACACCTCCG 60.226 63.158 0.00 0.00 0.00 4.63
3482 9017 1.682684 ATCTCACCCCTTCGTCGCT 60.683 57.895 0.00 0.00 0.00 4.93
3483 9018 1.519455 CATCTCACCCCTTCGTCGC 60.519 63.158 0.00 0.00 0.00 5.19
3484 9019 0.246635 AACATCTCACCCCTTCGTCG 59.753 55.000 0.00 0.00 0.00 5.12
3485 9020 2.028020 AGAAACATCTCACCCCTTCGTC 60.028 50.000 0.00 0.00 0.00 4.20
3486 9021 1.978580 AGAAACATCTCACCCCTTCGT 59.021 47.619 0.00 0.00 0.00 3.85
3487 9022 2.770164 AGAAACATCTCACCCCTTCG 57.230 50.000 0.00 0.00 0.00 3.79
3732 10688 6.410540 AGACAAGAGTTTGATCCCATTCTAC 58.589 40.000 0.00 0.00 37.73 2.59
3780 10737 1.032014 GGTGCATGTGTTGGACTGTT 58.968 50.000 0.00 0.00 45.34 3.16
3781 10738 0.183492 AGGTGCATGTGTTGGACTGT 59.817 50.000 0.00 0.00 45.34 3.55
3818 10775 7.681939 AAGCATGAAATACGAGGTAGAAAAA 57.318 32.000 0.00 0.00 0.00 1.94
3877 10835 4.640201 TGGAAAAGGTTGTTCTCTCAGTTG 59.360 41.667 0.00 0.00 0.00 3.16
3910 10868 3.062763 CGTATGCATGAAGGTGAGATCC 58.937 50.000 10.16 0.00 0.00 3.36
3916 10876 1.670811 GGGAACGTATGCATGAAGGTG 59.329 52.381 10.16 0.00 0.00 4.00
3930 10890 2.029020 TGTGTCATCTGAGAAGGGAACG 60.029 50.000 0.00 0.00 0.00 3.95
3934 10894 2.168106 CCTCTGTGTCATCTGAGAAGGG 59.832 54.545 0.00 0.00 36.12 3.95
3943 10903 0.321919 TGCTTGGCCTCTGTGTCATC 60.322 55.000 3.32 0.00 0.00 2.92
3952 10912 1.322442 AGAACAAGTTGCTTGGCCTC 58.678 50.000 3.32 6.75 44.81 4.70
4011 10972 4.336993 ACTTTAAAGACCATGCAAACGTCA 59.663 37.500 21.92 0.00 0.00 4.35
4015 10976 8.520351 AGGTATAACTTTAAAGACCATGCAAAC 58.480 33.333 21.92 6.44 0.00 2.93
4159 11120 7.938140 TTCCTACAACTTTCCTTCCATAATG 57.062 36.000 0.00 0.00 0.00 1.90
4165 11126 4.079970 CCCTTTCCTACAACTTTCCTTCC 58.920 47.826 0.00 0.00 0.00 3.46
4212 14149 8.893727 ACCTGAACTTGGATTCTTATTATTTCG 58.106 33.333 0.00 0.00 0.00 3.46
4245 14182 6.017192 TGACTAACCACCTAAGATCAAGTCT 58.983 40.000 0.00 0.00 39.43 3.24
4251 14188 8.041323 TCTTTTGATGACTAACCACCTAAGATC 58.959 37.037 0.00 0.00 0.00 2.75
4253 14190 7.311092 TCTTTTGATGACTAACCACCTAAGA 57.689 36.000 0.00 0.00 0.00 2.10
4256 14193 8.792633 CATTTTCTTTTGATGACTAACCACCTA 58.207 33.333 0.00 0.00 0.00 3.08
4262 14199 9.950680 TCAGAACATTTTCTTTTGATGACTAAC 57.049 29.630 0.00 0.00 40.34 2.34
4272 14209 9.603921 AATCAACATGTCAGAACATTTTCTTTT 57.396 25.926 0.00 0.00 43.74 2.27
4273 14210 9.037737 CAATCAACATGTCAGAACATTTTCTTT 57.962 29.630 0.00 0.00 43.74 2.52
4281 14218 6.448207 TTCAACAATCAACATGTCAGAACA 57.552 33.333 0.00 0.00 40.38 3.18
4282 14219 7.935338 AATTCAACAATCAACATGTCAGAAC 57.065 32.000 0.00 0.00 31.75 3.01
4286 14223 9.761504 ACAAATAATTCAACAATCAACATGTCA 57.238 25.926 0.00 0.00 0.00 3.58
4288 14225 8.497554 GCACAAATAATTCAACAATCAACATGT 58.502 29.630 0.00 0.00 0.00 3.21
4289 14226 8.714179 AGCACAAATAATTCAACAATCAACATG 58.286 29.630 0.00 0.00 0.00 3.21
4290 14227 8.836268 AGCACAAATAATTCAACAATCAACAT 57.164 26.923 0.00 0.00 0.00 2.71
4291 14228 7.924947 TGAGCACAAATAATTCAACAATCAACA 59.075 29.630 0.00 0.00 0.00 3.33
4292 14229 8.296799 TGAGCACAAATAATTCAACAATCAAC 57.703 30.769 0.00 0.00 0.00 3.18
4293 14230 8.883954 TTGAGCACAAATAATTCAACAATCAA 57.116 26.923 0.00 0.00 32.73 2.57
4309 14246 9.926158 ACATTCAACAATAAATATTGAGCACAA 57.074 25.926 17.63 0.00 44.40 3.33
4310 14247 9.356433 CACATTCAACAATAAATATTGAGCACA 57.644 29.630 17.63 0.00 44.40 4.57
4311 14248 9.357652 ACACATTCAACAATAAATATTGAGCAC 57.642 29.630 17.63 0.00 44.40 4.40
4312 14249 9.356433 CACACATTCAACAATAAATATTGAGCA 57.644 29.630 17.63 3.60 44.40 4.26
4313 14250 8.810427 CCACACATTCAACAATAAATATTGAGC 58.190 33.333 17.63 0.00 44.40 4.26
4320 14257 9.775854 TCATTTTCCACACATTCAACAATAAAT 57.224 25.926 0.00 0.00 0.00 1.40
4321 14258 9.775854 ATCATTTTCCACACATTCAACAATAAA 57.224 25.926 0.00 0.00 0.00 1.40
4322 14259 9.205719 CATCATTTTCCACACATTCAACAATAA 57.794 29.630 0.00 0.00 0.00 1.40
4323 14260 8.583296 TCATCATTTTCCACACATTCAACAATA 58.417 29.630 0.00 0.00 0.00 1.90
4324 14261 7.443477 TCATCATTTTCCACACATTCAACAAT 58.557 30.769 0.00 0.00 0.00 2.71
4325 14262 6.814043 TCATCATTTTCCACACATTCAACAA 58.186 32.000 0.00 0.00 0.00 2.83
4326 14263 6.402456 TCATCATTTTCCACACATTCAACA 57.598 33.333 0.00 0.00 0.00 3.33
4327 14264 7.712264 TTTCATCATTTTCCACACATTCAAC 57.288 32.000 0.00 0.00 0.00 3.18
4328 14265 8.905660 ATTTTCATCATTTTCCACACATTCAA 57.094 26.923 0.00 0.00 0.00 2.69
4332 14269 8.885722 GCAATATTTTCATCATTTTCCACACAT 58.114 29.630 0.00 0.00 0.00 3.21
4333 14270 7.876582 TGCAATATTTTCATCATTTTCCACACA 59.123 29.630 0.00 0.00 0.00 3.72
4334 14271 8.254178 TGCAATATTTTCATCATTTTCCACAC 57.746 30.769 0.00 0.00 0.00 3.82
4335 14272 8.843885 TTGCAATATTTTCATCATTTTCCACA 57.156 26.923 0.00 0.00 0.00 4.17
4342 14279 9.341078 GGGGTATTTTGCAATATTTTCATCATT 57.659 29.630 7.71 0.00 0.00 2.57
4343 14280 7.938490 GGGGGTATTTTGCAATATTTTCATCAT 59.062 33.333 7.71 0.00 0.00 2.45
4344 14281 7.278875 GGGGGTATTTTGCAATATTTTCATCA 58.721 34.615 7.71 0.00 0.00 3.07
4345 14282 7.728847 GGGGGTATTTTGCAATATTTTCATC 57.271 36.000 7.71 0.00 0.00 2.92
4379 14316 1.891919 CCCAACATGCCCGATACCG 60.892 63.158 0.00 0.00 0.00 4.02
4380 14317 0.535102 CTCCCAACATGCCCGATACC 60.535 60.000 0.00 0.00 0.00 2.73
4381 14318 0.180406 ACTCCCAACATGCCCGATAC 59.820 55.000 0.00 0.00 0.00 2.24
4382 14319 0.180171 CACTCCCAACATGCCCGATA 59.820 55.000 0.00 0.00 0.00 2.92
4383 14320 1.077501 CACTCCCAACATGCCCGAT 60.078 57.895 0.00 0.00 0.00 4.18
4384 14321 2.350895 CACTCCCAACATGCCCGA 59.649 61.111 0.00 0.00 0.00 5.14
4385 14322 2.751436 CCACTCCCAACATGCCCG 60.751 66.667 0.00 0.00 0.00 6.13
4386 14323 1.379044 CTCCACTCCCAACATGCCC 60.379 63.158 0.00 0.00 0.00 5.36
4387 14324 0.038166 TTCTCCACTCCCAACATGCC 59.962 55.000 0.00 0.00 0.00 4.40
4388 14325 1.909700 TTTCTCCACTCCCAACATGC 58.090 50.000 0.00 0.00 0.00 4.06
4389 14326 2.756760 CCATTTCTCCACTCCCAACATG 59.243 50.000 0.00 0.00 0.00 3.21
4390 14327 2.291800 CCCATTTCTCCACTCCCAACAT 60.292 50.000 0.00 0.00 0.00 2.71
4391 14328 1.075374 CCCATTTCTCCACTCCCAACA 59.925 52.381 0.00 0.00 0.00 3.33
4392 14329 1.616994 CCCCATTTCTCCACTCCCAAC 60.617 57.143 0.00 0.00 0.00 3.77
4393 14330 0.704076 CCCCATTTCTCCACTCCCAA 59.296 55.000 0.00 0.00 0.00 4.12
4394 14331 1.214305 CCCCCATTTCTCCACTCCCA 61.214 60.000 0.00 0.00 0.00 4.37
4395 14332 1.615262 CCCCCATTTCTCCACTCCC 59.385 63.158 0.00 0.00 0.00 4.30
4396 14333 1.076705 GCCCCCATTTCTCCACTCC 60.077 63.158 0.00 0.00 0.00 3.85
4397 14334 1.076705 GGCCCCCATTTCTCCACTC 60.077 63.158 0.00 0.00 0.00 3.51
4398 14335 1.856873 TGGCCCCCATTTCTCCACT 60.857 57.895 0.00 0.00 0.00 4.00
4399 14336 1.682344 GTGGCCCCCATTTCTCCAC 60.682 63.158 0.00 0.00 40.13 4.02
4400 14337 2.770130 GTGGCCCCCATTTCTCCA 59.230 61.111 0.00 0.00 35.28 3.86
4401 14338 2.042944 GGTGGCCCCCATTTCTCC 60.043 66.667 0.00 0.00 35.28 3.71
4402 14339 1.311059 ATGGTGGCCCCCATTTCTC 59.689 57.895 14.93 0.00 42.70 2.87
4403 14340 3.537081 ATGGTGGCCCCCATTTCT 58.463 55.556 14.93 0.00 42.70 2.52
4408 14345 2.951785 ATCCAATGGTGGCCCCCA 60.952 61.111 10.27 10.27 45.54 4.96
4409 14346 2.444517 CATCCAATGGTGGCCCCC 60.445 66.667 0.00 0.00 45.54 5.40
4410 14347 1.758122 GTCATCCAATGGTGGCCCC 60.758 63.158 0.00 0.85 45.54 5.80
4411 14348 1.039233 CAGTCATCCAATGGTGGCCC 61.039 60.000 0.00 0.00 45.54 5.80
4412 14349 0.323725 ACAGTCATCCAATGGTGGCC 60.324 55.000 0.00 0.00 45.54 5.36
4413 14350 1.549203 AACAGTCATCCAATGGTGGC 58.451 50.000 0.00 0.00 45.54 5.01
4442 14379 3.254903 GTCCGCAGACAAACCCTATTTTT 59.745 43.478 0.00 0.00 42.99 1.94
4443 14380 2.817844 GTCCGCAGACAAACCCTATTTT 59.182 45.455 0.00 0.00 42.99 1.82
4444 14381 2.433436 GTCCGCAGACAAACCCTATTT 58.567 47.619 0.00 0.00 42.99 1.40
4445 14382 2.109425 GTCCGCAGACAAACCCTATT 57.891 50.000 0.00 0.00 42.99 1.73
4446 14383 3.855159 GTCCGCAGACAAACCCTAT 57.145 52.632 0.00 0.00 42.99 2.57
4467 14404 4.657436 ATTCTTCTCTATGTCCGTGGAC 57.343 45.455 12.17 12.17 44.77 4.02
4468 14405 5.833667 ACATATTCTTCTCTATGTCCGTGGA 59.166 40.000 0.00 0.00 34.29 4.02
4469 14406 5.923114 CACATATTCTTCTCTATGTCCGTGG 59.077 44.000 0.00 0.00 36.64 4.94
4470 14407 6.638873 GTCACATATTCTTCTCTATGTCCGTG 59.361 42.308 0.00 0.00 36.64 4.94
4471 14408 6.321435 TGTCACATATTCTTCTCTATGTCCGT 59.679 38.462 0.00 0.00 36.64 4.69
4472 14409 6.638873 GTGTCACATATTCTTCTCTATGTCCG 59.361 42.308 0.00 0.00 36.64 4.79
4473 14410 7.721402 AGTGTCACATATTCTTCTCTATGTCC 58.279 38.462 5.62 0.00 36.64 4.02
4474 14411 8.409371 TGAGTGTCACATATTCTTCTCTATGTC 58.591 37.037 5.62 0.00 36.64 3.06
4475 14412 8.298729 TGAGTGTCACATATTCTTCTCTATGT 57.701 34.615 5.62 0.00 38.73 2.29
4476 14413 9.029243 GTTGAGTGTCACATATTCTTCTCTATG 57.971 37.037 5.62 0.00 0.00 2.23
4477 14414 8.200792 GGTTGAGTGTCACATATTCTTCTCTAT 58.799 37.037 5.62 0.00 0.00 1.98
4478 14415 7.178451 TGGTTGAGTGTCACATATTCTTCTCTA 59.822 37.037 5.62 0.00 0.00 2.43
4479 14416 6.014242 TGGTTGAGTGTCACATATTCTTCTCT 60.014 38.462 5.62 0.00 0.00 3.10
4480 14417 6.166279 TGGTTGAGTGTCACATATTCTTCTC 58.834 40.000 5.62 0.00 0.00 2.87
4481 14418 6.114187 TGGTTGAGTGTCACATATTCTTCT 57.886 37.500 5.62 0.00 0.00 2.85
4482 14419 6.992063 ATGGTTGAGTGTCACATATTCTTC 57.008 37.500 5.62 0.00 0.00 2.87
4483 14420 8.321353 TCTAATGGTTGAGTGTCACATATTCTT 58.679 33.333 5.62 0.00 0.00 2.52
4484 14421 7.851228 TCTAATGGTTGAGTGTCACATATTCT 58.149 34.615 5.62 0.00 0.00 2.40
4485 14422 7.981789 TCTCTAATGGTTGAGTGTCACATATTC 59.018 37.037 5.62 0.00 0.00 1.75
4486 14423 7.851228 TCTCTAATGGTTGAGTGTCACATATT 58.149 34.615 5.62 0.00 0.00 1.28
4487 14424 7.423844 TCTCTAATGGTTGAGTGTCACATAT 57.576 36.000 5.62 0.00 0.00 1.78
4488 14425 6.850752 TCTCTAATGGTTGAGTGTCACATA 57.149 37.500 5.62 0.00 0.00 2.29
4489 14426 5.745312 TCTCTAATGGTTGAGTGTCACAT 57.255 39.130 5.62 0.00 0.00 3.21
4490 14427 5.482006 CATCTCTAATGGTTGAGTGTCACA 58.518 41.667 5.62 0.00 0.00 3.58
4491 14428 4.331168 GCATCTCTAATGGTTGAGTGTCAC 59.669 45.833 0.00 0.00 0.00 3.67
4492 14429 4.507710 GCATCTCTAATGGTTGAGTGTCA 58.492 43.478 0.00 0.00 0.00 3.58
4493 14430 3.873952 GGCATCTCTAATGGTTGAGTGTC 59.126 47.826 0.00 0.00 0.00 3.67
4494 14431 3.370953 GGGCATCTCTAATGGTTGAGTGT 60.371 47.826 0.00 0.00 0.00 3.55
4495 14432 3.118112 AGGGCATCTCTAATGGTTGAGTG 60.118 47.826 0.00 0.00 0.00 3.51
4496 14433 3.118531 AGGGCATCTCTAATGGTTGAGT 58.881 45.455 0.00 0.00 0.00 3.41
4497 14434 3.853355 AGGGCATCTCTAATGGTTGAG 57.147 47.619 0.00 0.00 0.00 3.02
4498 14435 4.444876 GCTTAGGGCATCTCTAATGGTTGA 60.445 45.833 0.00 0.00 41.35 3.18
4499 14436 3.817647 GCTTAGGGCATCTCTAATGGTTG 59.182 47.826 0.00 0.00 41.35 3.77
4500 14437 4.092116 GCTTAGGGCATCTCTAATGGTT 57.908 45.455 0.00 0.00 41.35 3.67
4501 14438 3.778954 GCTTAGGGCATCTCTAATGGT 57.221 47.619 0.00 0.00 41.35 3.55
4513 14450 1.202428 CGTCTAGGAGTTGCTTAGGGC 60.202 57.143 0.00 0.00 42.22 5.19
4514 14451 2.376109 TCGTCTAGGAGTTGCTTAGGG 58.624 52.381 0.00 0.00 0.00 3.53
4515 14452 3.632604 TGATCGTCTAGGAGTTGCTTAGG 59.367 47.826 0.00 0.00 0.00 2.69
4516 14453 4.902443 TGATCGTCTAGGAGTTGCTTAG 57.098 45.455 0.00 0.00 0.00 2.18
4517 14454 5.133941 AGATGATCGTCTAGGAGTTGCTTA 58.866 41.667 16.02 0.00 0.00 3.09
4518 14455 3.957497 AGATGATCGTCTAGGAGTTGCTT 59.043 43.478 16.02 0.00 0.00 3.91
4519 14456 3.561143 AGATGATCGTCTAGGAGTTGCT 58.439 45.455 16.02 0.00 0.00 3.91
4520 14457 3.568007 AGAGATGATCGTCTAGGAGTTGC 59.432 47.826 17.49 2.93 0.00 4.17
4521 14458 5.995282 ACTAGAGATGATCGTCTAGGAGTTG 59.005 44.000 17.49 6.70 44.54 3.16
4522 14459 6.182507 ACTAGAGATGATCGTCTAGGAGTT 57.817 41.667 17.49 2.86 44.54 3.01
4523 14460 5.818678 ACTAGAGATGATCGTCTAGGAGT 57.181 43.478 17.49 16.19 44.54 3.85
4524 14461 5.995282 ACAACTAGAGATGATCGTCTAGGAG 59.005 44.000 17.49 15.62 44.54 3.69
4525 14462 5.931294 ACAACTAGAGATGATCGTCTAGGA 58.069 41.667 17.49 5.26 44.54 2.94
4526 14463 6.038825 ACAACAACTAGAGATGATCGTCTAGG 59.961 42.308 17.49 12.25 44.54 3.02
4527 14464 7.022055 ACAACAACTAGAGATGATCGTCTAG 57.978 40.000 17.49 18.03 45.37 2.43
4528 14465 7.392494 AACAACAACTAGAGATGATCGTCTA 57.608 36.000 17.49 8.06 0.00 2.59
4529 14466 5.906113 ACAACAACTAGAGATGATCGTCT 57.094 39.130 17.50 17.50 0.00 4.18
4530 14467 5.517054 GGAACAACAACTAGAGATGATCGTC 59.483 44.000 6.84 6.84 0.00 4.20
4531 14468 5.047306 TGGAACAACAACTAGAGATGATCGT 60.047 40.000 0.00 0.00 31.92 3.73
4532 14469 5.410924 TGGAACAACAACTAGAGATGATCG 58.589 41.667 0.00 0.00 31.92 3.69
4538 14475 9.618563 CTAGTGGCATGGAACAACAACTAGAGA 62.619 44.444 0.00 0.00 46.97 3.10
4539 14476 7.561454 CTAGTGGCATGGAACAACAACTAGAG 61.561 46.154 0.00 0.00 46.97 2.43
4540 14477 5.799918 CTAGTGGCATGGAACAACAACTAGA 60.800 44.000 0.00 0.00 46.97 2.43
4544 14481 9.835095 TAGGTACTAGTGGCATGGAACAACAAC 62.835 44.444 5.39 0.00 41.72 3.32
4545 14482 7.216002 AGGTACTAGTGGCATGGAACAACAA 62.216 44.000 5.39 0.00 39.27 2.83
4546 14483 5.791347 AGGTACTAGTGGCATGGAACAACA 61.791 45.833 5.39 0.00 39.27 3.33
4547 14484 3.307480 AGGTACTAGTGGCATGGAACAAC 60.307 47.826 5.39 0.00 39.27 3.32
4548 14485 2.910319 AGGTACTAGTGGCATGGAACAA 59.090 45.455 5.39 0.00 39.27 2.83
4549 14486 2.546899 AGGTACTAGTGGCATGGAACA 58.453 47.619 5.39 0.00 40.40 3.18
4550 14487 3.705072 AGTAGGTACTAGTGGCATGGAAC 59.295 47.826 5.39 0.00 43.92 3.62
4551 14488 3.958798 GAGTAGGTACTAGTGGCATGGAA 59.041 47.826 5.39 0.00 45.86 3.53
4552 14489 3.563223 GAGTAGGTACTAGTGGCATGGA 58.437 50.000 5.39 0.00 45.86 3.41
4553 14490 2.293677 CGAGTAGGTACTAGTGGCATGG 59.706 54.545 5.39 0.00 45.86 3.66
4554 14491 2.950309 ACGAGTAGGTACTAGTGGCATG 59.050 50.000 5.39 0.00 45.86 4.06
4555 14492 3.294038 ACGAGTAGGTACTAGTGGCAT 57.706 47.619 5.39 0.00 45.86 4.40
4556 14493 2.795231 ACGAGTAGGTACTAGTGGCA 57.205 50.000 5.39 0.00 45.86 4.92
4557 14494 7.446001 AATATTACGAGTAGGTACTAGTGGC 57.554 40.000 5.39 0.00 45.86 5.01
4558 14495 9.060347 TGAAATATTACGAGTAGGTACTAGTGG 57.940 37.037 5.39 0.24 45.86 4.00
4577 14514 9.866655 TGGTCTTTTCCTAAGCATATGAAATAT 57.133 29.630 6.97 0.00 41.02 1.28
4578 14515 9.342308 CTGGTCTTTTCCTAAGCATATGAAATA 57.658 33.333 6.97 0.00 29.48 1.40
4579 14516 8.055181 TCTGGTCTTTTCCTAAGCATATGAAAT 58.945 33.333 6.97 0.00 29.48 2.17
4580 14517 7.402054 TCTGGTCTTTTCCTAAGCATATGAAA 58.598 34.615 6.97 0.00 0.00 2.69
4581 14518 6.957631 TCTGGTCTTTTCCTAAGCATATGAA 58.042 36.000 6.97 0.00 0.00 2.57
4582 14519 6.560003 TCTGGTCTTTTCCTAAGCATATGA 57.440 37.500 6.97 0.00 0.00 2.15
4583 14520 6.146837 CGATCTGGTCTTTTCCTAAGCATATG 59.853 42.308 0.00 0.00 0.00 1.78
4584 14521 6.226787 CGATCTGGTCTTTTCCTAAGCATAT 58.773 40.000 0.00 0.00 0.00 1.78
4585 14522 5.453339 CCGATCTGGTCTTTTCCTAAGCATA 60.453 44.000 0.00 0.00 0.00 3.14
4586 14523 4.446371 CGATCTGGTCTTTTCCTAAGCAT 58.554 43.478 0.00 0.00 0.00 3.79
4587 14524 3.369471 CCGATCTGGTCTTTTCCTAAGCA 60.369 47.826 0.00 0.00 0.00 3.91
4588 14525 3.118738 TCCGATCTGGTCTTTTCCTAAGC 60.119 47.826 3.97 0.00 39.52 3.09
4589 14526 4.737855 TCCGATCTGGTCTTTTCCTAAG 57.262 45.455 3.97 0.00 39.52 2.18
4590 14527 5.492855 TTTCCGATCTGGTCTTTTCCTAA 57.507 39.130 3.97 0.00 39.52 2.69
4591 14528 5.693769 ATTTCCGATCTGGTCTTTTCCTA 57.306 39.130 3.97 0.00 39.52 2.94
4592 14529 4.576330 ATTTCCGATCTGGTCTTTTCCT 57.424 40.909 3.97 0.00 39.52 3.36
4593 14530 5.429130 AGTATTTCCGATCTGGTCTTTTCC 58.571 41.667 3.97 0.00 39.52 3.13
4594 14531 7.711339 ACATAGTATTTCCGATCTGGTCTTTTC 59.289 37.037 3.97 0.00 39.52 2.29
4595 14532 7.495934 CACATAGTATTTCCGATCTGGTCTTTT 59.504 37.037 3.97 0.00 39.52 2.27
4596 14533 6.986817 CACATAGTATTTCCGATCTGGTCTTT 59.013 38.462 3.97 0.00 39.52 2.52
4597 14534 6.098409 ACACATAGTATTTCCGATCTGGTCTT 59.902 38.462 3.97 0.00 39.52 3.01
4598 14535 5.598830 ACACATAGTATTTCCGATCTGGTCT 59.401 40.000 3.97 0.00 39.52 3.85
4599 14536 5.692204 CACACATAGTATTTCCGATCTGGTC 59.308 44.000 3.97 0.00 39.52 4.02
4600 14537 5.362717 TCACACATAGTATTTCCGATCTGGT 59.637 40.000 3.97 0.00 39.52 4.00
4601 14538 5.842907 TCACACATAGTATTTCCGATCTGG 58.157 41.667 0.00 0.00 40.09 3.86
4602 14539 7.203218 TCTTCACACATAGTATTTCCGATCTG 58.797 38.462 0.00 0.00 0.00 2.90
4603 14540 7.348080 TCTTCACACATAGTATTTCCGATCT 57.652 36.000 0.00 0.00 0.00 2.75
4604 14541 8.594881 AATCTTCACACATAGTATTTCCGATC 57.405 34.615 0.00 0.00 0.00 3.69
4605 14542 8.964476 AAATCTTCACACATAGTATTTCCGAT 57.036 30.769 0.00 0.00 0.00 4.18
4606 14543 9.309516 GTAAATCTTCACACATAGTATTTCCGA 57.690 33.333 0.00 0.00 0.00 4.55
4607 14544 9.314321 AGTAAATCTTCACACATAGTATTTCCG 57.686 33.333 0.00 0.00 0.00 4.30
4614 14551 8.883731 GTTGCATAGTAAATCTTCACACATAGT 58.116 33.333 0.00 0.00 0.00 2.12
4615 14552 8.058328 CGTTGCATAGTAAATCTTCACACATAG 58.942 37.037 0.00 0.00 0.00 2.23
4616 14553 7.011016 CCGTTGCATAGTAAATCTTCACACATA 59.989 37.037 0.00 0.00 0.00 2.29
4617 14554 6.183360 CCGTTGCATAGTAAATCTTCACACAT 60.183 38.462 0.00 0.00 0.00 3.21
4618 14555 5.121611 CCGTTGCATAGTAAATCTTCACACA 59.878 40.000 0.00 0.00 0.00 3.72
4619 14556 5.350365 TCCGTTGCATAGTAAATCTTCACAC 59.650 40.000 0.00 0.00 0.00 3.82
4620 14557 5.483811 TCCGTTGCATAGTAAATCTTCACA 58.516 37.500 0.00 0.00 0.00 3.58
4621 14558 6.292919 GGATCCGTTGCATAGTAAATCTTCAC 60.293 42.308 0.00 0.00 0.00 3.18
4622 14559 5.758296 GGATCCGTTGCATAGTAAATCTTCA 59.242 40.000 0.00 0.00 0.00 3.02
4623 14560 5.107453 CGGATCCGTTGCATAGTAAATCTTC 60.107 44.000 26.35 0.00 34.35 2.87
4624 14561 4.750098 CGGATCCGTTGCATAGTAAATCTT 59.250 41.667 26.35 0.00 34.35 2.40
4625 14562 4.307432 CGGATCCGTTGCATAGTAAATCT 58.693 43.478 26.35 0.00 34.35 2.40
4626 14563 3.120649 GCGGATCCGTTGCATAGTAAATC 60.121 47.826 33.33 9.31 42.09 2.17
4627 14564 2.806244 GCGGATCCGTTGCATAGTAAAT 59.194 45.455 33.33 0.00 42.09 1.40
4628 14565 2.206750 GCGGATCCGTTGCATAGTAAA 58.793 47.619 33.33 0.00 42.09 2.01
4629 14566 1.137282 TGCGGATCCGTTGCATAGTAA 59.863 47.619 33.33 5.71 42.09 2.24
4630 14567 0.747852 TGCGGATCCGTTGCATAGTA 59.252 50.000 33.33 7.85 42.09 1.82
4631 14568 0.107897 TTGCGGATCCGTTGCATAGT 60.108 50.000 33.33 0.00 42.09 2.12
4632 14569 1.013596 TTTGCGGATCCGTTGCATAG 58.986 50.000 33.33 5.31 42.09 2.23
4633 14570 1.674359 ATTTGCGGATCCGTTGCATA 58.326 45.000 33.33 18.73 42.09 3.14
4634 14571 0.817013 AATTTGCGGATCCGTTGCAT 59.183 45.000 33.33 18.06 42.09 3.96
4635 14572 0.600557 AAATTTGCGGATCCGTTGCA 59.399 45.000 33.33 21.08 42.09 4.08
4636 14573 0.991344 CAAATTTGCGGATCCGTTGC 59.009 50.000 33.33 18.66 42.09 4.17
4637 14574 2.346099 ACAAATTTGCGGATCCGTTG 57.654 45.000 33.33 28.49 42.09 4.10
4638 14575 3.078837 AGTACAAATTTGCGGATCCGTT 58.921 40.909 33.33 18.15 42.09 4.44
4639 14576 2.676342 GAGTACAAATTTGCGGATCCGT 59.324 45.455 33.33 12.75 42.09 4.69
4640 14577 2.675844 TGAGTACAAATTTGCGGATCCG 59.324 45.455 30.03 30.03 43.09 4.18
4641 14578 3.438781 TGTGAGTACAAATTTGCGGATCC 59.561 43.478 18.12 0.00 32.88 3.36
4642 14579 4.678509 TGTGAGTACAAATTTGCGGATC 57.321 40.909 18.12 11.26 32.88 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.