Multiple sequence alignment - TraesCS7B01G477400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G477400 chr7B 100.000 3071 0 0 1 3071 733175106 733178176 0.000000e+00 5672.0
1 TraesCS7B01G477400 chr7B 83.396 2644 356 45 1 2581 733081410 733084033 0.000000e+00 2374.0
2 TraesCS7B01G477400 chr7B 79.827 2543 423 54 3 2489 733309098 733311606 0.000000e+00 1772.0
3 TraesCS7B01G477400 chr7B 82.653 1983 280 44 540 2489 733142516 733144467 0.000000e+00 1698.0
4 TraesCS7B01G477400 chr7B 82.092 1558 207 32 938 2459 733037947 733039468 0.000000e+00 1266.0
5 TraesCS7B01G477400 chr7B 77.180 1617 294 46 913 2487 733301769 733303352 0.000000e+00 872.0
6 TraesCS7B01G477400 chr7B 100.000 321 0 0 3330 3650 733178435 733178755 8.730000e-166 593.0
7 TraesCS7B01G477400 chr7B 84.787 493 61 8 1876 2359 733145566 733146053 1.970000e-132 483.0
8 TraesCS7B01G477400 chr7B 88.947 190 20 1 2731 2919 733039829 733040018 2.190000e-57 233.0
9 TraesCS7B01G477400 chr7B 82.418 91 12 4 2930 3020 733084570 733084656 3.910000e-10 76.8
10 TraesCS7B01G477400 chr7B 82.759 87 12 2 2936 3020 733040107 733040192 1.410000e-09 75.0
11 TraesCS7B01G477400 chr7B 81.609 87 15 1 2930 3016 733152575 733152660 1.820000e-08 71.3
12 TraesCS7B01G477400 chr7D 87.821 2299 239 28 3 2287 630253652 630255923 0.000000e+00 2656.0
13 TraesCS7B01G477400 chr7D 82.207 1894 291 26 3 1868 630503240 630505115 0.000000e+00 1589.0
14 TraesCS7B01G477400 chr7D 82.428 1326 191 27 1378 2675 630489833 630491144 0.000000e+00 1120.0
15 TraesCS7B01G477400 chr7D 83.992 1037 154 10 840 1868 630274889 630275921 0.000000e+00 985.0
16 TraesCS7B01G477400 chr7D 78.700 1338 233 29 4 1314 630522044 630523356 0.000000e+00 845.0
17 TraesCS7B01G477400 chr7D 88.816 152 14 3 2584 2734 630256595 630256744 2.240000e-42 183.0
18 TraesCS7B01G477400 chr6B 84.004 2063 295 24 544 2579 662031116 662029062 0.000000e+00 1949.0
19 TraesCS7B01G477400 chr6B 89.895 287 22 2 2731 3016 662028805 662028525 2.680000e-96 363.0
20 TraesCS7B01G477400 chr1B 79.547 1809 305 39 595 2368 361369571 361371349 0.000000e+00 1230.0
21 TraesCS7B01G477400 chr1B 86.709 316 41 1 3335 3650 675254984 675254670 2.090000e-92 350.0
22 TraesCS7B01G477400 chr1B 85.938 320 43 2 3330 3648 544715284 544714966 1.260000e-89 340.0
23 TraesCS7B01G477400 chr7A 89.655 319 33 0 3330 3648 30923330 30923648 1.220000e-109 407.0
24 TraesCS7B01G477400 chr4D 91.228 285 25 0 3340 3624 470143260 470143544 4.420000e-104 388.0
25 TraesCS7B01G477400 chr1D 87.658 316 34 5 3335 3648 75527418 75527730 2.680000e-96 363.0
26 TraesCS7B01G477400 chr5A 84.472 322 40 8 3335 3650 559783292 559782975 3.540000e-80 309.0
27 TraesCS7B01G477400 chr3A 83.810 315 51 0 3335 3649 733038525 733038839 2.130000e-77 300.0
28 TraesCS7B01G477400 chr3B 84.388 237 34 2 3337 3570 810947568 810947804 2.830000e-56 230.0
29 TraesCS7B01G477400 chr6D 81.609 174 24 6 3335 3504 24368717 24368548 1.770000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G477400 chr7B 733175106 733178755 3649 False 3132.500000 5672 100.000000 1 3650 2 chr7B.!!$F7 3649
1 TraesCS7B01G477400 chr7B 733309098 733311606 2508 False 1772.000000 1772 79.827000 3 2489 1 chr7B.!!$F3 2486
2 TraesCS7B01G477400 chr7B 733081410 733084656 3246 False 1225.400000 2374 82.907000 1 3020 2 chr7B.!!$F5 3019
3 TraesCS7B01G477400 chr7B 733142516 733146053 3537 False 1090.500000 1698 83.720000 540 2489 2 chr7B.!!$F6 1949
4 TraesCS7B01G477400 chr7B 733301769 733303352 1583 False 872.000000 872 77.180000 913 2487 1 chr7B.!!$F2 1574
5 TraesCS7B01G477400 chr7B 733037947 733040192 2245 False 524.666667 1266 84.599333 938 3020 3 chr7B.!!$F4 2082
6 TraesCS7B01G477400 chr7D 630503240 630505115 1875 False 1589.000000 1589 82.207000 3 1868 1 chr7D.!!$F3 1865
7 TraesCS7B01G477400 chr7D 630253652 630256744 3092 False 1419.500000 2656 88.318500 3 2734 2 chr7D.!!$F5 2731
8 TraesCS7B01G477400 chr7D 630489833 630491144 1311 False 1120.000000 1120 82.428000 1378 2675 1 chr7D.!!$F2 1297
9 TraesCS7B01G477400 chr7D 630274889 630275921 1032 False 985.000000 985 83.992000 840 1868 1 chr7D.!!$F1 1028
10 TraesCS7B01G477400 chr7D 630522044 630523356 1312 False 845.000000 845 78.700000 4 1314 1 chr7D.!!$F4 1310
11 TraesCS7B01G477400 chr6B 662028525 662031116 2591 True 1156.000000 1949 86.949500 544 3016 2 chr6B.!!$R1 2472
12 TraesCS7B01G477400 chr1B 361369571 361371349 1778 False 1230.000000 1230 79.547000 595 2368 1 chr1B.!!$F1 1773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.179062 GGCAGATGCTGAACCTCGAT 60.179 55.0 4.59 0.00 41.70 3.59 F
295 305 0.318441 TTGGAGAGCACTTCGAGTGG 59.682 55.0 14.19 0.08 46.01 4.00 F
1226 1284 0.392461 TTGATCCACCTAGTTGCCGC 60.392 55.0 0.00 0.00 0.00 6.53 F
2462 2891 0.030235 GGTGTGGAAGGTTTCGTTGC 59.970 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1270 0.392998 AACCATCAGCGGCAACTAGG 60.393 55.0 1.45 0.00 0.00 3.02 R
1910 2035 0.712380 ATTGCCCAACCCCTTCAGAT 59.288 50.0 0.00 0.00 0.00 2.90 R
2553 3003 0.040646 TACGGCTTTCCTCCTCCTCA 59.959 55.0 0.00 0.00 0.00 3.86 R
3556 4266 0.031994 AATATTTGGAATGCGCCGGC 59.968 50.0 19.07 19.07 40.52 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.186702 GTACCCAGATCAAGAAGCTCC 57.813 52.381 0.00 0.00 0.00 4.70
70 71 0.179062 GGCAGATGCTGAACCTCGAT 60.179 55.000 4.59 0.00 41.70 3.59
84 91 2.764572 ACCTCGATAACTACACCCCAAG 59.235 50.000 0.00 0.00 0.00 3.61
223 233 2.359900 CTGAAGGTGGTGGCTATTGTC 58.640 52.381 0.00 0.00 0.00 3.18
295 305 0.318441 TTGGAGAGCACTTCGAGTGG 59.682 55.000 14.19 0.08 46.01 4.00
331 341 4.147449 TCGCGCACCCCTGATCTG 62.147 66.667 8.75 0.00 0.00 2.90
336 346 1.406065 CGCACCCCTGATCTGGAGAT 61.406 60.000 19.59 2.19 37.51 2.75
347 357 5.369409 TGATCTGGAGATGCTCTTGAAAT 57.631 39.130 0.00 0.00 34.37 2.17
352 362 6.656902 TCTGGAGATGCTCTTGAAATATGTT 58.343 36.000 0.00 0.00 0.00 2.71
379 401 2.092484 TCAAATCGATGGAGATGCCCAA 60.092 45.455 0.00 0.00 40.04 4.12
432 454 4.045104 CGTCGGATCCAAAGTATCTTGAG 58.955 47.826 13.41 0.00 0.00 3.02
549 599 7.595130 GGAAGAAAGACACAACCAACATATTTC 59.405 37.037 0.00 0.00 0.00 2.17
592 645 7.926018 TGATAGTGTAACATTGCATACAGGTAG 59.074 37.037 0.00 0.00 41.43 3.18
666 719 6.442513 AGCAGCTTTTCCTGACAATAATAC 57.557 37.500 0.00 0.00 34.77 1.89
701 754 1.072391 TGCAACTACACGCATTACCG 58.928 50.000 0.00 0.00 31.95 4.02
712 765 3.181774 CACGCATTACCGATGTAGCTAAC 59.818 47.826 0.00 0.00 38.07 2.34
732 785 4.602340 ACTCATGTTGTTCTAACTCCGT 57.398 40.909 0.00 0.00 0.00 4.69
824 877 0.536260 CTCAGAGAACTCCTGCCCTG 59.464 60.000 0.00 0.00 0.00 4.45
832 885 1.377994 CTCCTGCCCTGCTCAACTT 59.622 57.895 0.00 0.00 0.00 2.66
847 900 4.461405 CTCAACTTGAAGATGTTTCAGCG 58.539 43.478 0.00 0.00 0.00 5.18
991 1045 8.272060 GTCTTTCATATGACAGTGATGGTGACA 61.272 40.741 16.53 0.00 37.70 3.58
1044 1098 1.153289 CTGGGATCTTCCGCACCAG 60.153 63.158 0.00 0.00 42.28 4.00
1090 1145 8.709308 ACTTATGTATATATCCAGAGGATTGGC 58.291 37.037 3.55 0.00 39.79 4.52
1091 1146 5.598416 TGTATATATCCAGAGGATTGGCG 57.402 43.478 3.55 0.00 39.79 5.69
1098 1153 1.688735 CCAGAGGATTGGCGTATCTCA 59.311 52.381 0.00 0.00 0.00 3.27
1170 1225 8.641541 ACAAAACATGGAAGTTTGTATCAAGAT 58.358 29.630 13.88 0.00 40.60 2.40
1206 1261 9.119418 TGTTTCAATGAACTTGTCAATAGAAGA 57.881 29.630 0.00 0.00 40.50 2.87
1215 1270 7.856145 ACTTGTCAATAGAAGATTGATCCAC 57.144 36.000 3.48 0.00 39.80 4.02
1223 1278 4.775236 AGAAGATTGATCCACCTAGTTGC 58.225 43.478 0.00 0.00 0.00 4.17
1224 1279 3.567478 AGATTGATCCACCTAGTTGCC 57.433 47.619 0.00 0.00 0.00 4.52
1226 1284 0.392461 TTGATCCACCTAGTTGCCGC 60.392 55.000 0.00 0.00 0.00 6.53
1297 1370 8.347004 TGACCTCATAATATCTCTGTCAGATC 57.653 38.462 2.22 0.00 41.39 2.75
1314 1387 3.817084 CAGATCAAGAGAACTTTGCCACA 59.183 43.478 0.00 0.00 33.70 4.17
1326 1399 5.733226 ACTTTGCCACAATTTTAAACAGC 57.267 34.783 0.00 0.00 0.00 4.40
1327 1400 5.181748 ACTTTGCCACAATTTTAAACAGCA 58.818 33.333 0.00 0.00 0.00 4.41
1397 1473 1.055849 GGGCATGAACAAAAAGGGGT 58.944 50.000 0.00 0.00 0.00 4.95
1479 1555 5.941788 ACAAAGAAGATACCTCCACTTGTT 58.058 37.500 0.00 0.00 0.00 2.83
1492 1568 3.964688 TCCACTTGTTGACTTCCAGTCTA 59.035 43.478 5.53 0.00 45.27 2.59
1496 1572 4.202357 ACTTGTTGACTTCCAGTCTATGCA 60.202 41.667 5.53 0.00 45.27 3.96
1516 1592 5.124645 TGCATGTGCTTGATATATGTGTGA 58.875 37.500 6.55 0.00 42.66 3.58
1522 1598 8.369218 TGTGCTTGATATATGTGTGAACTATG 57.631 34.615 0.00 0.00 0.00 2.23
1523 1599 8.203485 TGTGCTTGATATATGTGTGAACTATGA 58.797 33.333 0.00 0.00 0.00 2.15
1527 1603 9.416794 CTTGATATATGTGTGAACTATGAGTCC 57.583 37.037 0.00 0.00 0.00 3.85
1592 1675 8.156820 TCAACTGAGGTATTTGAGAATTCAGAA 58.843 33.333 8.44 0.00 33.94 3.02
1636 1725 4.708177 TGAAGATATTGGGAAGCTACAGC 58.292 43.478 0.00 0.00 42.49 4.40
1658 1747 4.692625 GCACTTAGAGACTCTTGATTTGCA 59.307 41.667 10.96 0.00 0.00 4.08
1662 1751 4.840716 AGAGACTCTTGATTTGCAGGAT 57.159 40.909 0.00 0.00 31.63 3.24
1672 1764 6.772716 TCTTGATTTGCAGGATACCCTAATTC 59.227 38.462 0.00 0.00 42.02 2.17
1702 1797 3.872240 GCCATCAACTACAGCCCAACTAA 60.872 47.826 0.00 0.00 0.00 2.24
1745 1843 2.685897 TCCGCTTTAAGTGTGTGCTTTT 59.314 40.909 4.77 0.00 0.00 2.27
1746 1844 3.042887 CCGCTTTAAGTGTGTGCTTTTC 58.957 45.455 4.77 0.00 0.00 2.29
1799 1900 7.398618 CCTGGAGGAAGTGTCAGATATATGTAT 59.601 40.741 0.00 0.00 37.39 2.29
1910 2035 5.048643 GCTATGGAGAAAGACTAGCGTCATA 60.049 44.000 0.00 0.00 42.73 2.15
1949 2074 6.335777 GCAATGACAGCCTTCAATATCTTTT 58.664 36.000 0.00 0.00 0.00 2.27
1952 2077 9.859427 CAATGACAGCCTTCAATATCTTTTTAA 57.141 29.630 0.00 0.00 0.00 1.52
1953 2078 9.860898 AATGACAGCCTTCAATATCTTTTTAAC 57.139 29.630 0.00 0.00 0.00 2.01
1983 2108 8.207545 GGACAAATAGGAGAATATCTGTTCAGT 58.792 37.037 0.00 0.00 0.00 3.41
1994 2119 3.257469 TCTGTTCAGTGATCCATGCTC 57.743 47.619 0.00 0.00 0.00 4.26
2005 2130 1.198094 TCCATGCTCCACCTTTCCGA 61.198 55.000 0.00 0.00 0.00 4.55
2035 2160 1.861982 TCTTGTACTAGTGCTCCCCC 58.138 55.000 12.42 0.00 0.00 5.40
2070 2195 4.878878 GGAATGGCCTCCCTAACG 57.121 61.111 3.32 0.00 0.00 3.18
2077 2202 0.539986 GGCCTCCCTAACGAACATCA 59.460 55.000 0.00 0.00 0.00 3.07
2180 2305 4.262635 CCGGCTAGATGTATTGGATCAGTT 60.263 45.833 0.00 0.00 0.00 3.16
2225 2350 2.622436 GAACGGATTCAAGCTGCTAGT 58.378 47.619 0.90 0.00 34.70 2.57
2251 2376 6.086222 GTGTTCCACTACACAATTAATGCAG 58.914 40.000 0.00 0.00 46.00 4.41
2253 2378 6.658816 TGTTCCACTACACAATTAATGCAGAT 59.341 34.615 0.00 0.00 0.00 2.90
2304 2733 2.705934 CTATGCCAGCGCTCCGATGT 62.706 60.000 7.13 0.00 41.89 3.06
2308 2737 2.653448 CAGCGCTCCGATGTCTCG 60.653 66.667 7.13 0.00 44.62 4.04
2362 2791 0.454620 GACTAGTGACGGTGCTGACG 60.455 60.000 0.00 0.00 37.36 4.35
2375 2804 3.241530 TGACGTGGGCCTTGAGCT 61.242 61.111 4.53 0.00 43.05 4.09
2376 2805 2.743928 GACGTGGGCCTTGAGCTG 60.744 66.667 4.53 0.00 43.05 4.24
2394 2823 3.788775 GCTTTCAAGCCTTGCTGAG 57.211 52.632 0.00 0.00 46.20 3.35
2403 2832 0.034670 GCCTTGCTGAGATCCAGGTT 60.035 55.000 11.63 0.00 43.13 3.50
2410 2839 3.181440 TGCTGAGATCCAGGTTGAAACTT 60.181 43.478 11.63 0.00 43.13 2.66
2411 2840 3.438434 GCTGAGATCCAGGTTGAAACTTC 59.562 47.826 11.63 0.00 43.13 3.01
2415 2844 3.823304 AGATCCAGGTTGAAACTTCTTGC 59.177 43.478 0.00 0.00 0.00 4.01
2427 2856 5.241285 TGAAACTTCTTGCTATGATGCAACA 59.759 36.000 0.00 0.00 46.43 3.33
2444 2873 2.283966 ACTGGACGAGGTGGAGGG 60.284 66.667 0.00 0.00 0.00 4.30
2462 2891 0.030235 GGTGTGGAAGGTTTCGTTGC 59.970 55.000 0.00 0.00 0.00 4.17
2497 2932 5.500234 CTTTGTATCCCAACCATCTTCAGA 58.500 41.667 0.00 0.00 31.20 3.27
2500 2935 2.988010 TCCCAACCATCTTCAGATCG 57.012 50.000 0.00 0.00 31.21 3.69
2512 2947 4.844884 TCTTCAGATCGGTCTCAGTAGAA 58.155 43.478 0.00 0.00 32.16 2.10
2513 2948 4.878971 TCTTCAGATCGGTCTCAGTAGAAG 59.121 45.833 13.79 13.79 33.81 2.85
2515 2950 4.193090 TCAGATCGGTCTCAGTAGAAGAC 58.807 47.826 0.00 0.00 32.16 3.01
2516 2951 3.942115 CAGATCGGTCTCAGTAGAAGACA 59.058 47.826 0.00 0.00 34.52 3.41
2535 2970 8.702819 AGAAGACATGAAGAGATGATTATGACA 58.297 33.333 0.00 0.00 0.00 3.58
2537 2972 8.659925 AGACATGAAGAGATGATTATGACAAC 57.340 34.615 0.00 0.00 0.00 3.32
2542 2977 6.096846 TGAAGAGATGATTATGACAACCGAGA 59.903 38.462 0.00 0.00 0.00 4.04
2547 2982 4.433615 TGATTATGACAACCGAGAAGAGC 58.566 43.478 0.00 0.00 0.00 4.09
2553 3003 2.737252 GACAACCGAGAAGAGCGAAAAT 59.263 45.455 0.00 0.00 0.00 1.82
2568 3045 2.680339 CGAAAATGAGGAGGAGGAAAGC 59.320 50.000 0.00 0.00 0.00 3.51
2588 3112 1.030457 CGTAGGAGAGCACGGGTTAT 58.970 55.000 0.00 0.00 34.57 1.89
2604 3131 4.503910 GGGTTATTTCATTCCTTTGCACC 58.496 43.478 0.00 0.00 0.00 5.01
2612 3139 0.326595 TTCCTTTGCACCGCATCCTA 59.673 50.000 0.00 0.00 38.76 2.94
2647 3180 1.679898 CCCTCTTTTCCTCCGCAGT 59.320 57.895 0.00 0.00 0.00 4.40
2663 3196 1.850377 CAGTAGCGAGAAGAGCATGG 58.150 55.000 0.00 0.00 37.01 3.66
2665 3198 0.461961 GTAGCGAGAAGAGCATGGGT 59.538 55.000 0.00 0.00 37.01 4.51
2666 3199 0.461548 TAGCGAGAAGAGCATGGGTG 59.538 55.000 0.00 0.00 37.01 4.61
2667 3200 1.219124 GCGAGAAGAGCATGGGTGA 59.781 57.895 0.00 0.00 34.19 4.02
2670 3203 1.134580 CGAGAAGAGCATGGGTGATGT 60.135 52.381 0.00 0.00 34.14 3.06
2692 3255 5.756347 TGTGAGCCACCGTATTTATGTATTC 59.244 40.000 3.33 0.00 32.73 1.75
2747 3353 3.810941 TGTGTGTTTTTCGTCCCATAGTC 59.189 43.478 0.00 0.00 0.00 2.59
2776 3382 1.811359 AGTACGAGTACAGACAGTGGC 59.189 52.381 14.83 0.00 38.48 5.01
2799 3405 2.809174 CTGATGCGCGTCGAACCA 60.809 61.111 23.73 6.45 0.00 3.67
2998 3690 5.536161 AGCTGAACTGTTTGATGTTGGTATT 59.464 36.000 0.00 0.00 0.00 1.89
3000 3692 6.144402 GCTGAACTGTTTGATGTTGGTATTTG 59.856 38.462 0.00 0.00 0.00 2.32
3006 3698 9.733556 ACTGTTTGATGTTGGTATTTGTATAGA 57.266 29.630 0.00 0.00 0.00 1.98
3031 3741 1.849039 ACATTCATAGCTGGGAAGGCT 59.151 47.619 12.03 0.00 43.02 4.58
3032 3742 3.048600 ACATTCATAGCTGGGAAGGCTA 58.951 45.455 12.03 0.00 44.76 3.93
3034 3744 1.722034 TCATAGCTGGGAAGGCTAGG 58.278 55.000 0.00 0.00 44.05 3.02
3035 3745 1.062121 TCATAGCTGGGAAGGCTAGGT 60.062 52.381 0.00 0.00 44.05 3.08
3036 3746 1.771255 CATAGCTGGGAAGGCTAGGTT 59.229 52.381 0.00 0.00 44.05 3.50
3037 3747 1.966845 TAGCTGGGAAGGCTAGGTTT 58.033 50.000 0.00 0.00 40.74 3.27
3039 3749 1.004862 AGCTGGGAAGGCTAGGTTTTC 59.995 52.381 0.00 0.00 38.36 2.29
3040 3750 1.271926 GCTGGGAAGGCTAGGTTTTCA 60.272 52.381 0.00 0.00 0.00 2.69
3041 3751 2.817839 GCTGGGAAGGCTAGGTTTTCAA 60.818 50.000 0.00 0.00 0.00 2.69
3042 3752 3.084786 CTGGGAAGGCTAGGTTTTCAAG 58.915 50.000 0.00 0.00 0.00 3.02
3044 3754 3.117284 TGGGAAGGCTAGGTTTTCAAGTT 60.117 43.478 0.00 0.00 0.00 2.66
3046 3756 4.344102 GGGAAGGCTAGGTTTTCAAGTTTT 59.656 41.667 0.00 0.00 0.00 2.43
3047 3757 5.509163 GGGAAGGCTAGGTTTTCAAGTTTTC 60.509 44.000 0.00 0.00 0.00 2.29
3048 3758 5.068591 GGAAGGCTAGGTTTTCAAGTTTTCA 59.931 40.000 0.00 0.00 0.00 2.69
3049 3759 6.406512 GGAAGGCTAGGTTTTCAAGTTTTCAA 60.407 38.462 0.00 0.00 0.00 2.69
3050 3760 6.538945 AGGCTAGGTTTTCAAGTTTTCAAA 57.461 33.333 0.00 0.00 0.00 2.69
3051 3761 7.124573 AGGCTAGGTTTTCAAGTTTTCAAAT 57.875 32.000 0.00 0.00 0.00 2.32
3054 3764 8.761497 GGCTAGGTTTTCAAGTTTTCAAATTAC 58.239 33.333 0.00 0.00 0.00 1.89
3055 3765 9.308318 GCTAGGTTTTCAAGTTTTCAAATTACA 57.692 29.630 0.00 0.00 0.00 2.41
3348 4058 2.588464 AGTGGAGACGAGAGGAGAAA 57.412 50.000 0.00 0.00 0.00 2.52
3349 4059 2.877866 AGTGGAGACGAGAGGAGAAAA 58.122 47.619 0.00 0.00 0.00 2.29
3350 4060 3.231818 AGTGGAGACGAGAGGAGAAAAA 58.768 45.455 0.00 0.00 0.00 1.94
3366 4076 0.530288 AAAAATCCCGCCACAATCCG 59.470 50.000 0.00 0.00 0.00 4.18
3367 4077 1.319614 AAAATCCCGCCACAATCCGG 61.320 55.000 0.00 0.00 43.97 5.14
3368 4078 4.875713 ATCCCGCCACAATCCGGC 62.876 66.667 0.00 0.00 46.62 6.13
3382 4092 2.702592 TCCGGCGTGGATTTTTCTAT 57.297 45.000 6.01 0.00 43.74 1.98
3383 4093 2.557317 TCCGGCGTGGATTTTTCTATC 58.443 47.619 6.01 0.00 43.74 2.08
3384 4094 1.602377 CCGGCGTGGATTTTTCTATCC 59.398 52.381 6.01 0.00 43.68 2.59
3385 4095 1.260561 CGGCGTGGATTTTTCTATCCG 59.739 52.381 0.00 0.00 45.89 4.18
3390 4100 4.983671 GTGGATTTTTCTATCCGCCTTT 57.016 40.909 5.15 0.00 45.39 3.11
3391 4101 5.324784 GTGGATTTTTCTATCCGCCTTTT 57.675 39.130 5.15 0.00 45.39 2.27
3392 4102 5.720202 GTGGATTTTTCTATCCGCCTTTTT 58.280 37.500 5.15 0.00 45.39 1.94
3394 4104 7.317390 GTGGATTTTTCTATCCGCCTTTTTAA 58.683 34.615 5.15 0.00 45.39 1.52
3407 4117 2.500229 CTTTTTAAGGCGGTGAGACCA 58.500 47.619 0.00 0.00 38.47 4.02
3408 4118 2.642154 TTTTAAGGCGGTGAGACCAA 57.358 45.000 0.00 0.00 38.47 3.67
3409 4119 2.642154 TTTAAGGCGGTGAGACCAAA 57.358 45.000 0.00 0.00 38.47 3.28
3411 4121 1.344065 TAAGGCGGTGAGACCAAAGA 58.656 50.000 0.00 0.00 38.47 2.52
3413 4123 1.122019 AGGCGGTGAGACCAAAGAGT 61.122 55.000 0.00 0.00 38.47 3.24
3414 4124 0.951040 GGCGGTGAGACCAAAGAGTG 60.951 60.000 0.00 0.00 38.47 3.51
3417 4127 1.337260 CGGTGAGACCAAAGAGTGAGG 60.337 57.143 0.00 0.00 38.47 3.86
3418 4128 1.694696 GGTGAGACCAAAGAGTGAGGT 59.305 52.381 0.00 0.00 38.42 3.85
3421 4131 3.516578 GACCAAAGAGTGAGGTCCG 57.483 57.895 0.00 0.00 44.72 4.79
3423 4133 0.969894 ACCAAAGAGTGAGGTCCGAG 59.030 55.000 0.00 0.00 0.00 4.63
3424 4134 1.257743 CCAAAGAGTGAGGTCCGAGA 58.742 55.000 0.00 0.00 0.00 4.04
3425 4135 1.827969 CCAAAGAGTGAGGTCCGAGAT 59.172 52.381 0.00 0.00 0.00 2.75
3426 4136 2.417924 CCAAAGAGTGAGGTCCGAGATG 60.418 54.545 0.00 0.00 0.00 2.90
3427 4137 2.493675 CAAAGAGTGAGGTCCGAGATGA 59.506 50.000 0.00 0.00 0.00 2.92
3428 4138 2.746279 AGAGTGAGGTCCGAGATGAT 57.254 50.000 0.00 0.00 0.00 2.45
3430 4140 3.750371 AGAGTGAGGTCCGAGATGATAG 58.250 50.000 0.00 0.00 0.00 2.08
3431 4141 2.227865 GAGTGAGGTCCGAGATGATAGC 59.772 54.545 0.00 0.00 0.00 2.97
3432 4142 1.271102 GTGAGGTCCGAGATGATAGCC 59.729 57.143 0.00 0.00 0.00 3.93
3433 4143 0.892063 GAGGTCCGAGATGATAGCCC 59.108 60.000 0.00 0.00 0.00 5.19
3435 4145 1.711375 AGGTCCGAGATGATAGCCCTA 59.289 52.381 0.00 0.00 0.00 3.53
3436 4146 2.110188 AGGTCCGAGATGATAGCCCTAA 59.890 50.000 0.00 0.00 0.00 2.69
3438 4148 3.515901 GGTCCGAGATGATAGCCCTAATT 59.484 47.826 0.00 0.00 0.00 1.40
3439 4149 4.710375 GGTCCGAGATGATAGCCCTAATTA 59.290 45.833 0.00 0.00 0.00 1.40
3441 4151 4.398358 TCCGAGATGATAGCCCTAATTACG 59.602 45.833 0.00 0.00 0.00 3.18
3442 4152 4.158025 CCGAGATGATAGCCCTAATTACGT 59.842 45.833 0.00 0.00 0.00 3.57
3443 4153 5.336531 CCGAGATGATAGCCCTAATTACGTT 60.337 44.000 0.00 0.00 0.00 3.99
3444 4154 6.127814 CCGAGATGATAGCCCTAATTACGTTA 60.128 42.308 0.00 0.00 0.00 3.18
3445 4155 6.746364 CGAGATGATAGCCCTAATTACGTTAC 59.254 42.308 0.00 0.00 0.00 2.50
3446 4156 7.534723 AGATGATAGCCCTAATTACGTTACA 57.465 36.000 0.00 0.00 0.00 2.41
3447 4157 8.135382 AGATGATAGCCCTAATTACGTTACAT 57.865 34.615 0.00 0.00 0.00 2.29
3449 4159 6.460781 TGATAGCCCTAATTACGTTACATGG 58.539 40.000 0.00 0.00 0.00 3.66
3450 4160 3.473625 AGCCCTAATTACGTTACATGGC 58.526 45.455 0.00 0.00 36.62 4.40
3451 4161 3.118186 AGCCCTAATTACGTTACATGGCA 60.118 43.478 14.38 0.00 38.81 4.92
3452 4162 3.628487 GCCCTAATTACGTTACATGGCAA 59.372 43.478 0.00 0.00 36.40 4.52
3453 4163 4.096682 GCCCTAATTACGTTACATGGCAAA 59.903 41.667 0.00 0.00 36.40 3.68
3454 4164 5.732247 GCCCTAATTACGTTACATGGCAAAG 60.732 44.000 0.00 0.00 36.40 2.77
3456 4166 5.587043 CCTAATTACGTTACATGGCAAAGGA 59.413 40.000 0.00 0.00 0.00 3.36
3458 4168 2.851263 ACGTTACATGGCAAAGGAGA 57.149 45.000 0.00 0.00 0.00 3.71
3459 4169 2.423577 ACGTTACATGGCAAAGGAGAC 58.576 47.619 0.00 0.00 0.00 3.36
3463 4173 4.082787 CGTTACATGGCAAAGGAGACAAAT 60.083 41.667 0.00 0.00 0.00 2.32
3464 4174 5.564651 CGTTACATGGCAAAGGAGACAAATT 60.565 40.000 0.00 0.00 0.00 1.82
3465 4175 4.525912 ACATGGCAAAGGAGACAAATTC 57.474 40.909 0.00 0.00 0.00 2.17
3466 4176 3.259123 ACATGGCAAAGGAGACAAATTCC 59.741 43.478 0.00 0.00 34.83 3.01
3467 4177 3.243359 TGGCAAAGGAGACAAATTCCT 57.757 42.857 0.00 0.00 46.97 3.36
3469 4179 4.735369 TGGCAAAGGAGACAAATTCCTAA 58.265 39.130 0.00 0.00 44.24 2.69
3470 4180 5.144100 TGGCAAAGGAGACAAATTCCTAAA 58.856 37.500 0.00 0.00 44.24 1.85
3472 4182 6.159293 GGCAAAGGAGACAAATTCCTAAAAG 58.841 40.000 0.00 0.00 44.24 2.27
3473 4183 6.239317 GGCAAAGGAGACAAATTCCTAAAAGT 60.239 38.462 0.00 0.00 44.24 2.66
3475 4185 7.710907 GCAAAGGAGACAAATTCCTAAAAGTTT 59.289 33.333 0.00 0.00 44.24 2.66
3477 4187 9.599866 AAAGGAGACAAATTCCTAAAAGTTTTG 57.400 29.630 11.18 1.56 44.24 2.44
3478 4188 8.306313 AGGAGACAAATTCCTAAAAGTTTTGT 57.694 30.769 11.18 0.00 43.21 2.83
3481 4191 7.980742 GACAAATTCCTAAAAGTTTTGTCGT 57.019 32.000 11.18 0.00 43.33 4.34
3482 4192 8.402326 GACAAATTCCTAAAAGTTTTGTCGTT 57.598 30.769 11.18 0.00 43.33 3.85
3483 4193 8.180317 ACAAATTCCTAAAAGTTTTGTCGTTG 57.820 30.769 11.18 9.50 36.12 4.10
3485 4195 3.942739 TCCTAAAAGTTTTGTCGTTGCG 58.057 40.909 11.18 0.00 0.00 4.85
3486 4196 3.622163 TCCTAAAAGTTTTGTCGTTGCGA 59.378 39.130 11.18 0.00 0.00 5.10
3487 4197 3.966218 CCTAAAAGTTTTGTCGTTGCGAG 59.034 43.478 11.18 0.00 36.23 5.03
3488 4198 1.822581 AAAGTTTTGTCGTTGCGAGC 58.177 45.000 0.00 0.00 36.23 5.03
3491 4201 0.985416 GTTTTGTCGTTGCGAGCGTC 60.985 55.000 0.00 0.00 36.23 5.19
3493 4203 3.776659 TTGTCGTTGCGAGCGTCCA 62.777 57.895 0.00 0.00 36.23 4.02
3494 4204 3.033764 GTCGTTGCGAGCGTCCAA 61.034 61.111 0.00 0.00 36.23 3.53
3495 4205 2.279584 TCGTTGCGAGCGTCCAAA 60.280 55.556 0.00 0.00 0.00 3.28
3497 4207 1.206578 CGTTGCGAGCGTCCAAAAT 59.793 52.632 0.00 0.00 0.00 1.82
3499 4209 1.766069 GTTGCGAGCGTCCAAAATTT 58.234 45.000 0.00 0.00 0.00 1.82
3500 4210 2.124122 GTTGCGAGCGTCCAAAATTTT 58.876 42.857 0.00 0.00 0.00 1.82
3501 4211 2.044888 TGCGAGCGTCCAAAATTTTC 57.955 45.000 0.00 0.00 0.00 2.29
3502 4212 1.335506 TGCGAGCGTCCAAAATTTTCC 60.336 47.619 0.00 0.00 0.00 3.13
3504 4214 2.671070 GCGAGCGTCCAAAATTTTCCAT 60.671 45.455 0.00 0.00 0.00 3.41
3505 4215 3.426963 GCGAGCGTCCAAAATTTTCCATA 60.427 43.478 0.00 0.00 0.00 2.74
3506 4216 4.728534 CGAGCGTCCAAAATTTTCCATAA 58.271 39.130 0.00 0.00 0.00 1.90
3507 4217 5.157781 CGAGCGTCCAAAATTTTCCATAAA 58.842 37.500 0.00 0.00 0.00 1.40
3508 4218 5.631512 CGAGCGTCCAAAATTTTCCATAAAA 59.368 36.000 0.00 0.00 38.87 1.52
3509 4219 6.310224 CGAGCGTCCAAAATTTTCCATAAAAT 59.690 34.615 0.00 0.00 45.20 1.82
3511 4221 7.158021 AGCGTCCAAAATTTTCCATAAAATGA 58.842 30.769 0.00 0.00 43.04 2.57
3512 4222 7.331687 AGCGTCCAAAATTTTCCATAAAATGAG 59.668 33.333 0.00 0.00 43.04 2.90
3513 4223 7.330700 GCGTCCAAAATTTTCCATAAAATGAGA 59.669 33.333 0.00 0.00 43.04 3.27
3514 4224 9.202273 CGTCCAAAATTTTCCATAAAATGAGAA 57.798 29.630 0.00 0.00 43.04 2.87
3516 4226 9.218440 TCCAAAATTTTCCATAAAATGAGAAGC 57.782 29.630 0.00 0.00 43.04 3.86
3517 4227 9.001542 CCAAAATTTTCCATAAAATGAGAAGCA 57.998 29.630 0.00 0.00 43.04 3.91
3523 4233 9.775854 TTTTCCATAAAATGAGAAGCAAAATGA 57.224 25.926 0.00 0.00 29.59 2.57
3524 4234 9.775854 TTTCCATAAAATGAGAAGCAAAATGAA 57.224 25.926 0.00 0.00 0.00 2.57
3525 4235 9.775854 TTCCATAAAATGAGAAGCAAAATGAAA 57.224 25.926 0.00 0.00 0.00 2.69
3526 4236 9.426837 TCCATAAAATGAGAAGCAAAATGAAAG 57.573 29.630 0.00 0.00 0.00 2.62
3527 4237 8.662141 CCATAAAATGAGAAGCAAAATGAAAGG 58.338 33.333 0.00 0.00 0.00 3.11
3528 4238 6.549912 AAAATGAGAAGCAAAATGAAAGGC 57.450 33.333 0.00 0.00 0.00 4.35
3529 4239 3.665745 TGAGAAGCAAAATGAAAGGCC 57.334 42.857 0.00 0.00 0.00 5.19
3531 4241 3.006110 TGAGAAGCAAAATGAAAGGCCAG 59.994 43.478 5.01 0.00 0.00 4.85
3532 4242 2.301009 AGAAGCAAAATGAAAGGCCAGG 59.699 45.455 5.01 0.00 0.00 4.45
3533 4243 2.014010 AGCAAAATGAAAGGCCAGGA 57.986 45.000 5.01 0.00 0.00 3.86
3534 4244 2.328319 AGCAAAATGAAAGGCCAGGAA 58.672 42.857 5.01 0.00 0.00 3.36
3535 4245 2.301009 AGCAAAATGAAAGGCCAGGAAG 59.699 45.455 5.01 0.00 0.00 3.46
3536 4246 2.299867 GCAAAATGAAAGGCCAGGAAGA 59.700 45.455 5.01 0.00 0.00 2.87
3538 4248 3.532641 AAATGAAAGGCCAGGAAGACT 57.467 42.857 5.01 0.00 0.00 3.24
3548 4258 3.308626 AGGAAGACTGAGGTAGGCC 57.691 57.895 0.00 0.00 33.59 5.19
3549 4259 0.413832 AGGAAGACTGAGGTAGGCCA 59.586 55.000 5.01 0.00 33.59 5.36
3550 4260 1.008938 AGGAAGACTGAGGTAGGCCAT 59.991 52.381 5.01 0.00 33.59 4.40
3551 4261 1.139853 GGAAGACTGAGGTAGGCCATG 59.860 57.143 5.01 0.00 33.59 3.66
3552 4262 0.543749 AAGACTGAGGTAGGCCATGC 59.456 55.000 5.01 0.00 33.59 4.06
3553 4263 0.618680 AGACTGAGGTAGGCCATGCA 60.619 55.000 5.01 0.00 33.59 3.96
3554 4264 0.471617 GACTGAGGTAGGCCATGCAT 59.528 55.000 5.01 0.00 37.19 3.96
3555 4265 1.694150 GACTGAGGTAGGCCATGCATA 59.306 52.381 5.01 0.00 37.19 3.14
3556 4266 1.696336 ACTGAGGTAGGCCATGCATAG 59.304 52.381 5.01 0.00 37.19 2.23
3557 4267 0.397941 TGAGGTAGGCCATGCATAGC 59.602 55.000 8.76 8.76 42.39 2.97
3565 4275 3.359523 CATGCATAGCCGGCGCAT 61.360 61.111 27.99 27.99 46.98 4.73
3566 4276 2.595463 ATGCATAGCCGGCGCATT 60.595 55.556 27.99 15.88 43.67 3.56
3567 4277 2.620112 ATGCATAGCCGGCGCATTC 61.620 57.895 27.99 17.74 43.67 2.67
3568 4278 4.030452 GCATAGCCGGCGCATTCC 62.030 66.667 23.20 8.11 37.52 3.01
3569 4279 2.591429 CATAGCCGGCGCATTCCA 60.591 61.111 23.20 1.44 37.52 3.53
3570 4280 2.186160 CATAGCCGGCGCATTCCAA 61.186 57.895 23.20 0.28 37.52 3.53
3571 4281 1.453015 ATAGCCGGCGCATTCCAAA 60.453 52.632 23.20 0.00 37.52 3.28
3572 4282 0.823356 ATAGCCGGCGCATTCCAAAT 60.823 50.000 23.20 0.95 37.52 2.32
3573 4283 0.179043 TAGCCGGCGCATTCCAAATA 60.179 50.000 23.20 0.00 37.52 1.40
3575 4285 0.031994 GCCGGCGCATTCCAAATATT 59.968 50.000 12.58 0.00 34.03 1.28
3591 4301 6.630444 CAAATATTGGACAGAGGAGAATGG 57.370 41.667 0.00 0.00 0.00 3.16
3592 4302 2.725221 ATTGGACAGAGGAGAATGGC 57.275 50.000 0.00 0.00 0.00 4.40
3593 4303 1.361204 TTGGACAGAGGAGAATGGCA 58.639 50.000 0.00 0.00 0.00 4.92
3594 4304 0.907486 TGGACAGAGGAGAATGGCAG 59.093 55.000 0.00 0.00 0.00 4.85
3595 4305 0.179936 GGACAGAGGAGAATGGCAGG 59.820 60.000 0.00 0.00 0.00 4.85
3597 4307 0.252881 ACAGAGGAGAATGGCAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
3598 4308 0.914644 CAGAGGAGAATGGCAGGGAA 59.085 55.000 0.00 0.00 0.00 3.97
3599 4309 1.134159 CAGAGGAGAATGGCAGGGAAG 60.134 57.143 0.00 0.00 0.00 3.46
3600 4310 0.465278 GAGGAGAATGGCAGGGAAGC 60.465 60.000 0.00 0.00 0.00 3.86
3601 4311 1.210204 AGGAGAATGGCAGGGAAGCA 61.210 55.000 0.00 0.00 35.83 3.91
3602 4312 0.750911 GGAGAATGGCAGGGAAGCAG 60.751 60.000 0.00 0.00 35.83 4.24
3603 4313 1.379576 AGAATGGCAGGGAAGCAGC 60.380 57.895 0.00 0.00 35.83 5.25
3620 4330 4.813907 CCCAATGGCTCCCCAAAT 57.186 55.556 0.00 0.00 46.14 2.32
3621 4331 2.214235 CCCAATGGCTCCCCAAATG 58.786 57.895 0.00 0.00 46.14 2.32
3622 4332 1.339644 CCCAATGGCTCCCCAAATGG 61.340 60.000 0.00 9.66 46.14 3.16
3626 4336 0.638292 ATGGCTCCCCAAATGGATGT 59.362 50.000 0.00 0.00 46.14 3.06
3627 4337 0.033208 TGGCTCCCCAAATGGATGTC 60.033 55.000 0.00 0.00 38.46 3.06
3629 4339 1.728490 GCTCCCCAAATGGATGTCGC 61.728 60.000 0.00 0.00 37.39 5.19
3630 4340 0.107017 CTCCCCAAATGGATGTCGCT 60.107 55.000 0.00 0.00 37.39 4.93
3631 4341 0.394216 TCCCCAAATGGATGTCGCTG 60.394 55.000 0.00 0.00 37.39 5.18
3632 4342 0.394216 CCCCAAATGGATGTCGCTGA 60.394 55.000 0.00 0.00 37.39 4.26
3634 4344 1.402968 CCCAAATGGATGTCGCTGAAG 59.597 52.381 0.00 0.00 37.39 3.02
3635 4345 1.402968 CCAAATGGATGTCGCTGAAGG 59.597 52.381 0.00 0.00 37.39 3.46
3636 4346 1.402968 CAAATGGATGTCGCTGAAGGG 59.597 52.381 0.00 0.00 0.00 3.95
3637 4347 0.749454 AATGGATGTCGCTGAAGGGC 60.749 55.000 0.00 0.00 0.00 5.19
3639 4349 1.153086 GGATGTCGCTGAAGGGCAT 60.153 57.895 4.73 4.73 0.00 4.40
3640 4350 1.442526 GGATGTCGCTGAAGGGCATG 61.443 60.000 8.32 0.00 0.00 4.06
3641 4351 0.745845 GATGTCGCTGAAGGGCATGT 60.746 55.000 0.00 0.00 0.00 3.21
3642 4352 1.028330 ATGTCGCTGAAGGGCATGTG 61.028 55.000 0.00 0.00 0.00 3.21
3644 4354 0.955428 GTCGCTGAAGGGCATGTGAA 60.955 55.000 0.00 0.00 0.00 3.18
3645 4355 0.674581 TCGCTGAAGGGCATGTGAAG 60.675 55.000 0.00 0.00 0.00 3.02
3646 4356 0.674581 CGCTGAAGGGCATGTGAAGA 60.675 55.000 0.00 0.00 0.00 2.87
3647 4357 1.538047 GCTGAAGGGCATGTGAAGAA 58.462 50.000 0.00 0.00 0.00 2.52
3648 4358 1.471684 GCTGAAGGGCATGTGAAGAAG 59.528 52.381 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.119245 GGTGTAGTTATCGAGGTTCAGCA 60.119 47.826 0.00 0.00 0.00 4.41
70 71 1.895131 GTCGTCCTTGGGGTGTAGTTA 59.105 52.381 0.00 0.00 0.00 2.24
84 91 1.793134 ATCTATCGCCACGGTCGTCC 61.793 60.000 0.00 0.00 0.00 4.79
162 169 4.889409 TCAGCAAAGAAACAACCTCATCTT 59.111 37.500 0.00 0.00 33.73 2.40
188 198 0.972134 TTCAGCTCCACACTCTCCTG 59.028 55.000 0.00 0.00 0.00 3.86
223 233 3.809013 CCCAATCCCCCACCTCCG 61.809 72.222 0.00 0.00 0.00 4.63
295 305 2.049063 ACCGACACAGAAGCTCGC 60.049 61.111 0.00 0.00 0.00 5.03
336 346 6.466812 TGAGACAGAACATATTTCAAGAGCA 58.533 36.000 0.00 0.00 0.00 4.26
347 357 6.096846 TCTCCATCGATTTGAGACAGAACATA 59.903 38.462 16.69 0.00 30.48 2.29
352 362 4.738839 GCATCTCCATCGATTTGAGACAGA 60.739 45.833 20.94 5.55 37.92 3.41
379 401 3.517500 GGTCTTTCTTCCACCTCTCTGAT 59.482 47.826 0.00 0.00 0.00 2.90
432 454 7.929245 GGATGAAGAAACTATACCTCTTTCCTC 59.071 40.741 0.00 0.00 29.25 3.71
498 525 8.262227 CCACCTATTAATAACTGGTTGTGTCTA 58.738 37.037 2.84 0.00 0.00 2.59
517 544 4.104102 TGGTTGTGTCTTTCTTCCACCTAT 59.896 41.667 0.00 0.00 0.00 2.57
519 546 2.241176 TGGTTGTGTCTTTCTTCCACCT 59.759 45.455 0.00 0.00 0.00 4.00
567 617 7.926555 ACTACCTGTATGCAATGTTACACTATC 59.073 37.037 0.00 0.00 0.00 2.08
631 684 5.069516 AGGAAAAGCTGCTTTGAGAAAATCA 59.930 36.000 26.63 0.00 33.64 2.57
666 719 8.818057 GTGTAGTTGCAATTATTCTACTACCAG 58.182 37.037 19.17 0.00 39.24 4.00
685 738 3.241067 ACATCGGTAATGCGTGTAGTT 57.759 42.857 0.00 0.00 39.12 2.24
701 754 8.596380 GTTAGAACAACATGAGTTAGCTACATC 58.404 37.037 0.00 0.00 35.85 3.06
732 785 4.577693 GTGGCATTTGATAGAGCTGATCAA 59.422 41.667 14.04 14.04 40.65 2.57
794 847 6.484643 CAGGAGTTCTCTGAGTTGAAAATTCA 59.515 38.462 4.32 0.00 40.46 2.57
824 877 4.225208 GCTGAAACATCTTCAAGTTGAGC 58.775 43.478 5.56 0.00 31.23 4.26
832 885 3.616956 ATCCTCGCTGAAACATCTTCA 57.383 42.857 0.00 0.00 0.00 3.02
847 900 6.015434 ACACCACCACATTTTCTTAAATCCTC 60.015 38.462 0.00 0.00 31.63 3.71
895 949 3.438781 TGTTTATTGGCTAGCAAACTCGG 59.561 43.478 21.88 0.00 33.16 4.63
1012 1066 7.985752 CGGAAGATCCCAGTAACTAATTAACTT 59.014 37.037 0.00 0.00 31.13 2.66
1013 1067 7.498443 CGGAAGATCCCAGTAACTAATTAACT 58.502 38.462 0.00 0.00 31.13 2.24
1018 1072 3.709653 TGCGGAAGATCCCAGTAACTAAT 59.290 43.478 0.00 0.00 31.13 1.73
1044 1098 9.221775 CATAAGTACAACAAACAAGTCTTCAAC 57.778 33.333 0.00 0.00 0.00 3.18
1090 1145 6.951256 TTTCAGTTCTTCACATGAGATACG 57.049 37.500 0.00 0.00 0.00 3.06
1091 1146 7.550551 TCCATTTCAGTTCTTCACATGAGATAC 59.449 37.037 0.00 0.00 0.00 2.24
1098 1153 6.494491 TCCATTTCCATTTCAGTTCTTCACAT 59.506 34.615 0.00 0.00 0.00 3.21
1170 1225 4.883585 AGTTCATTGAAACAACTCTCTGCA 59.116 37.500 0.00 0.00 0.00 4.41
1206 1261 1.747206 GCGGCAACTAGGTGGATCAAT 60.747 52.381 10.43 0.00 0.00 2.57
1215 1270 0.392998 AACCATCAGCGGCAACTAGG 60.393 55.000 1.45 0.00 0.00 3.02
1297 1370 7.769272 TTAAAATTGTGGCAAAGTTCTCTTG 57.231 32.000 0.00 0.00 33.79 3.02
1346 1419 3.070734 CAGGGAGATTCGATGGATCTTGT 59.929 47.826 0.00 0.00 0.00 3.16
1397 1473 3.696051 GCTTCTTGTGATGGCTTGGATTA 59.304 43.478 0.00 0.00 0.00 1.75
1462 1538 5.513267 GGAAGTCAACAAGTGGAGGTATCTT 60.513 44.000 0.00 0.00 0.00 2.40
1492 1568 5.766174 TCACACATATATCAAGCACATGCAT 59.234 36.000 6.64 0.00 45.16 3.96
1496 1572 8.996271 CATAGTTCACACATATATCAAGCACAT 58.004 33.333 0.00 0.00 0.00 3.21
1516 1592 4.993705 TGTTTTCCCAGGACTCATAGTT 57.006 40.909 0.00 0.00 0.00 2.24
1522 1598 2.951229 TCCTTGTTTTCCCAGGACTC 57.049 50.000 0.00 0.00 0.00 3.36
1523 1599 6.447084 TCTTATATCCTTGTTTTCCCAGGACT 59.553 38.462 0.00 0.00 0.00 3.85
1563 1645 9.958180 TGAATTCTCAAATACCTCAGTTGATAA 57.042 29.630 7.05 0.00 40.24 1.75
1592 1675 3.863142 GAAGCTTTGTGATTCCTGCAT 57.137 42.857 0.00 0.00 35.23 3.96
1636 1725 5.350914 CCTGCAAATCAAGAGTCTCTAAGTG 59.649 44.000 1.88 0.00 0.00 3.16
1658 1747 4.202409 GCAGCTCTTGAATTAGGGTATCCT 60.202 45.833 0.00 0.00 46.96 3.24
1662 1751 2.843730 TGGCAGCTCTTGAATTAGGGTA 59.156 45.455 0.00 0.00 0.00 3.69
1672 1764 2.676839 CTGTAGTTGATGGCAGCTCTTG 59.323 50.000 3.69 0.00 36.86 3.02
1702 1797 5.329035 ACAAATAGGCGCATCAAATTCTT 57.671 34.783 10.83 0.00 0.00 2.52
1745 1843 1.209261 TGCTCCCAGACATATTTGCGA 59.791 47.619 0.00 0.00 0.00 5.10
1746 1844 1.667236 TGCTCCCAGACATATTTGCG 58.333 50.000 0.00 0.00 0.00 4.85
1799 1900 7.417342 CCAAAAATTTCTCAGGGTTGTCAACTA 60.417 37.037 15.17 0.00 0.00 2.24
1862 1963 1.413812 CAGTCCATGATCCGGTCATCA 59.586 52.381 14.28 11.52 45.76 3.07
1869 1970 2.251409 AGCATTCAGTCCATGATCCG 57.749 50.000 0.00 0.00 37.89 4.18
1910 2035 0.712380 ATTGCCCAACCCCTTCAGAT 59.288 50.000 0.00 0.00 0.00 2.90
1949 2074 5.486735 TTCTCCTATTTGTCCACGGTTAA 57.513 39.130 0.00 0.00 0.00 2.01
1952 2077 5.602978 AGATATTCTCCTATTTGTCCACGGT 59.397 40.000 0.00 0.00 0.00 4.83
1953 2078 5.928839 CAGATATTCTCCTATTTGTCCACGG 59.071 44.000 0.00 0.00 0.00 4.94
1983 2108 1.064463 GGAAAGGTGGAGCATGGATCA 60.064 52.381 0.00 0.00 0.00 2.92
1994 2119 1.975660 TTGAAGGTTCGGAAAGGTGG 58.024 50.000 0.00 0.00 0.00 4.61
2005 2130 6.998673 AGCACTAGTACAAGATTTTGAAGGTT 59.001 34.615 2.48 0.00 37.73 3.50
2035 2160 1.635487 TCCCTTTGGAACCCTCATCAG 59.365 52.381 0.00 0.00 37.86 2.90
2092 2217 8.900781 ACCTTCATCATCAAATAATCTGACTTG 58.099 33.333 0.00 0.00 0.00 3.16
2251 2376 6.254804 GCAAATTTTATACCCGTTGTTCCATC 59.745 38.462 0.00 0.00 0.00 3.51
2253 2378 5.010719 TGCAAATTTTATACCCGTTGTTCCA 59.989 36.000 0.00 0.00 0.00 3.53
2304 2733 1.475403 CCTTCCAGGTAAGCTCGAGA 58.525 55.000 18.75 0.00 0.00 4.04
2308 2737 0.741221 CGTGCCTTCCAGGTAAGCTC 60.741 60.000 0.00 0.00 37.80 4.09
2310 2739 0.605589 AACGTGCCTTCCAGGTAAGC 60.606 55.000 0.00 0.00 41.37 3.09
2362 2791 1.871126 GAAAGCAGCTCAAGGCCCAC 61.871 60.000 0.00 0.00 43.05 4.61
2394 2823 3.823304 AGCAAGAAGTTTCAACCTGGATC 59.177 43.478 0.00 0.00 0.00 3.36
2415 2844 2.862536 CTCGTCCAGTGTTGCATCATAG 59.137 50.000 0.00 0.00 0.00 2.23
2427 2856 2.283966 CCCTCCACCTCGTCCAGT 60.284 66.667 0.00 0.00 0.00 4.00
2444 2873 0.736053 TGCAACGAAACCTTCCACAC 59.264 50.000 0.00 0.00 0.00 3.82
2479 2908 3.324846 CCGATCTGAAGATGGTTGGGATA 59.675 47.826 0.00 0.00 34.37 2.59
2497 2932 4.527944 TCATGTCTTCTACTGAGACCGAT 58.472 43.478 0.00 0.00 0.00 4.18
2500 2935 5.650266 TCTCTTCATGTCTTCTACTGAGACC 59.350 44.000 0.00 0.00 0.00 3.85
2512 2947 7.714377 GGTTGTCATAATCATCTCTTCATGTCT 59.286 37.037 0.00 0.00 0.00 3.41
2513 2948 7.307042 CGGTTGTCATAATCATCTCTTCATGTC 60.307 40.741 0.00 0.00 0.00 3.06
2515 2950 6.703165 TCGGTTGTCATAATCATCTCTTCATG 59.297 38.462 0.00 0.00 0.00 3.07
2516 2951 6.820335 TCGGTTGTCATAATCATCTCTTCAT 58.180 36.000 0.00 0.00 0.00 2.57
2532 2967 1.779569 TTTCGCTCTTCTCGGTTGTC 58.220 50.000 0.00 0.00 0.00 3.18
2535 2970 2.996621 CTCATTTTCGCTCTTCTCGGTT 59.003 45.455 0.00 0.00 0.00 4.44
2537 2972 1.929836 CCTCATTTTCGCTCTTCTCGG 59.070 52.381 0.00 0.00 0.00 4.63
2542 2977 2.093235 CCTCCTCCTCATTTTCGCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
2547 2982 2.680339 GCTTTCCTCCTCCTCATTTTCG 59.320 50.000 0.00 0.00 0.00 3.46
2553 3003 0.040646 TACGGCTTTCCTCCTCCTCA 59.959 55.000 0.00 0.00 0.00 3.86
2581 3058 4.173256 GTGCAAAGGAATGAAATAACCCG 58.827 43.478 0.00 0.00 0.00 5.28
2588 3112 1.035923 TGCGGTGCAAAGGAATGAAA 58.964 45.000 0.00 0.00 34.76 2.69
2604 3131 5.063186 GCAGATCAGTAAATCATAGGATGCG 59.937 44.000 0.00 0.00 32.92 4.73
2612 3139 3.979347 AGAGGGGCAGATCAGTAAATCAT 59.021 43.478 0.00 0.00 0.00 2.45
2647 3180 0.461548 CACCCATGCTCTTCTCGCTA 59.538 55.000 0.00 0.00 0.00 4.26
2665 3198 2.779755 AAATACGGTGGCTCACATCA 57.220 45.000 7.49 0.00 35.86 3.07
2666 3199 4.127171 ACATAAATACGGTGGCTCACATC 58.873 43.478 7.49 0.00 35.86 3.06
2667 3200 4.150897 ACATAAATACGGTGGCTCACAT 57.849 40.909 7.49 0.00 35.86 3.21
2670 3203 5.302360 GGAATACATAAATACGGTGGCTCA 58.698 41.667 0.00 0.00 0.00 4.26
2692 3255 1.039068 TTCCAACAACAGCACATGGG 58.961 50.000 0.00 0.00 0.00 4.00
2776 3382 1.059369 CGACGCGCATCAGGAAAAG 59.941 57.895 5.73 0.00 0.00 2.27
2825 3431 4.426736 AGGGGAAACAACGAAAAGTCTA 57.573 40.909 0.00 0.00 0.00 2.59
2832 3438 4.379339 CTTGAAAAGGGGAAACAACGAA 57.621 40.909 0.00 0.00 41.27 3.85
2904 3511 6.410540 AGCAAGAGACTTTCCAAATAGTAGG 58.589 40.000 0.00 0.00 0.00 3.18
3000 3692 8.972127 TCCCAGCTATGAATGTAGAATCTATAC 58.028 37.037 0.00 0.00 0.00 1.47
3006 3698 5.747248 GCCTTCCCAGCTATGAATGTAGAAT 60.747 44.000 0.00 0.00 0.00 2.40
3008 3700 3.071602 GCCTTCCCAGCTATGAATGTAGA 59.928 47.826 0.00 0.00 0.00 2.59
3009 3701 3.072184 AGCCTTCCCAGCTATGAATGTAG 59.928 47.826 0.00 0.00 39.29 2.74
3010 3702 3.048600 AGCCTTCCCAGCTATGAATGTA 58.951 45.455 0.00 0.00 39.29 2.29
3011 3703 1.849039 AGCCTTCCCAGCTATGAATGT 59.151 47.619 0.00 0.00 39.29 2.71
3012 3704 2.653234 AGCCTTCCCAGCTATGAATG 57.347 50.000 0.00 0.00 39.29 2.67
3015 3707 1.062121 ACCTAGCCTTCCCAGCTATGA 60.062 52.381 2.70 0.00 41.79 2.15
3016 3708 1.428869 ACCTAGCCTTCCCAGCTATG 58.571 55.000 0.00 0.00 41.79 2.23
3017 3709 2.198334 AACCTAGCCTTCCCAGCTAT 57.802 50.000 0.00 0.00 41.79 2.97
3329 4039 2.588464 TTTCTCCTCTCGTCTCCACT 57.412 50.000 0.00 0.00 0.00 4.00
3330 4040 3.662247 TTTTTCTCCTCTCGTCTCCAC 57.338 47.619 0.00 0.00 0.00 4.02
3347 4057 0.530288 CGGATTGTGGCGGGATTTTT 59.470 50.000 0.00 0.00 0.00 1.94
3348 4058 1.319614 CCGGATTGTGGCGGGATTTT 61.320 55.000 0.00 0.00 0.00 1.82
3349 4059 1.752694 CCGGATTGTGGCGGGATTT 60.753 57.895 0.00 0.00 0.00 2.17
3350 4060 2.124320 CCGGATTGTGGCGGGATT 60.124 61.111 0.00 0.00 0.00 3.01
3351 4061 4.875713 GCCGGATTGTGGCGGGAT 62.876 66.667 5.05 0.00 43.70 3.85
3364 4074 1.602377 GGATAGAAAAATCCACGCCGG 59.398 52.381 0.00 0.00 44.26 6.13
3365 4075 1.260561 CGGATAGAAAAATCCACGCCG 59.739 52.381 3.94 0.00 44.98 6.46
3366 4076 1.002792 GCGGATAGAAAAATCCACGCC 60.003 52.381 0.00 0.00 44.98 5.68
3367 4077 1.002792 GGCGGATAGAAAAATCCACGC 60.003 52.381 0.00 0.00 44.98 5.34
3368 4078 2.561569 AGGCGGATAGAAAAATCCACG 58.438 47.619 3.94 0.00 44.98 4.94
3369 4079 4.983671 AAAGGCGGATAGAAAAATCCAC 57.016 40.909 3.94 0.00 44.98 4.02
3387 4097 2.500229 TGGTCTCACCGCCTTAAAAAG 58.500 47.619 0.00 0.00 42.58 2.27
3388 4098 2.642154 TGGTCTCACCGCCTTAAAAA 57.358 45.000 0.00 0.00 42.58 1.94
3389 4099 2.642154 TTGGTCTCACCGCCTTAAAA 57.358 45.000 0.00 0.00 42.58 1.52
3390 4100 2.105134 TCTTTGGTCTCACCGCCTTAAA 59.895 45.455 0.00 0.00 42.58 1.52
3391 4101 1.695242 TCTTTGGTCTCACCGCCTTAA 59.305 47.619 0.00 0.00 42.58 1.85
3392 4102 1.275291 CTCTTTGGTCTCACCGCCTTA 59.725 52.381 0.00 0.00 42.58 2.69
3394 4104 1.122019 ACTCTTTGGTCTCACCGCCT 61.122 55.000 0.00 0.00 42.58 5.52
3399 4109 2.289133 GGACCTCACTCTTTGGTCTCAC 60.289 54.545 10.60 0.00 46.76 3.51
3400 4110 1.971357 GGACCTCACTCTTTGGTCTCA 59.029 52.381 10.60 0.00 46.76 3.27
3401 4111 1.067495 CGGACCTCACTCTTTGGTCTC 60.067 57.143 10.60 1.85 46.76 3.36
3402 4112 0.969894 CGGACCTCACTCTTTGGTCT 59.030 55.000 10.60 0.00 46.76 3.85
3403 4113 0.966920 TCGGACCTCACTCTTTGGTC 59.033 55.000 0.00 0.00 46.83 4.02
3404 4114 0.969894 CTCGGACCTCACTCTTTGGT 59.030 55.000 0.00 0.00 36.70 3.67
3405 4115 1.257743 TCTCGGACCTCACTCTTTGG 58.742 55.000 0.00 0.00 0.00 3.28
3407 4117 2.808919 TCATCTCGGACCTCACTCTTT 58.191 47.619 0.00 0.00 0.00 2.52
3408 4118 2.516227 TCATCTCGGACCTCACTCTT 57.484 50.000 0.00 0.00 0.00 2.85
3409 4119 2.746279 ATCATCTCGGACCTCACTCT 57.254 50.000 0.00 0.00 0.00 3.24
3411 4121 2.235016 GCTATCATCTCGGACCTCACT 58.765 52.381 0.00 0.00 0.00 3.41
3413 4123 1.621992 GGCTATCATCTCGGACCTCA 58.378 55.000 0.00 0.00 0.00 3.86
3414 4124 0.892063 GGGCTATCATCTCGGACCTC 59.108 60.000 0.00 0.00 0.00 3.85
3417 4127 4.810191 AATTAGGGCTATCATCTCGGAC 57.190 45.455 0.00 0.00 0.00 4.79
3418 4128 4.398358 CGTAATTAGGGCTATCATCTCGGA 59.602 45.833 0.00 0.00 0.00 4.55
3420 4130 5.312120 ACGTAATTAGGGCTATCATCTCG 57.688 43.478 9.79 0.00 0.00 4.04
3421 4131 7.600065 TGTAACGTAATTAGGGCTATCATCTC 58.400 38.462 9.79 0.00 0.00 2.75
3423 4133 7.277981 CCATGTAACGTAATTAGGGCTATCATC 59.722 40.741 9.79 0.00 0.00 2.92
3424 4134 7.103641 CCATGTAACGTAATTAGGGCTATCAT 58.896 38.462 9.79 4.64 0.00 2.45
3425 4135 6.460781 CCATGTAACGTAATTAGGGCTATCA 58.539 40.000 9.79 2.82 0.00 2.15
3426 4136 5.350640 GCCATGTAACGTAATTAGGGCTATC 59.649 44.000 9.79 0.00 34.80 2.08
3427 4137 5.221762 TGCCATGTAACGTAATTAGGGCTAT 60.222 40.000 15.34 0.00 36.93 2.97
3428 4138 4.101274 TGCCATGTAACGTAATTAGGGCTA 59.899 41.667 15.34 0.00 36.93 3.93
3430 4140 3.207778 TGCCATGTAACGTAATTAGGGC 58.792 45.455 9.79 9.74 36.71 5.19
3431 4141 5.220970 CCTTTGCCATGTAACGTAATTAGGG 60.221 44.000 9.79 0.00 0.00 3.53
3432 4142 5.587043 TCCTTTGCCATGTAACGTAATTAGG 59.413 40.000 3.64 3.64 0.00 2.69
3433 4143 6.537301 TCTCCTTTGCCATGTAACGTAATTAG 59.463 38.462 0.00 0.00 0.00 1.73
3435 4145 5.123344 GTCTCCTTTGCCATGTAACGTAATT 59.877 40.000 0.00 0.00 0.00 1.40
3436 4146 4.634443 GTCTCCTTTGCCATGTAACGTAAT 59.366 41.667 0.00 0.00 0.00 1.89
3438 4148 3.007074 TGTCTCCTTTGCCATGTAACGTA 59.993 43.478 0.00 0.00 0.00 3.57
3439 4149 2.224426 TGTCTCCTTTGCCATGTAACGT 60.224 45.455 0.00 0.00 0.00 3.99
3441 4151 4.846779 TTTGTCTCCTTTGCCATGTAAC 57.153 40.909 0.00 0.00 0.00 2.50
3442 4152 5.047377 GGAATTTGTCTCCTTTGCCATGTAA 60.047 40.000 0.00 0.00 0.00 2.41
3443 4153 4.462483 GGAATTTGTCTCCTTTGCCATGTA 59.538 41.667 0.00 0.00 0.00 2.29
3444 4154 3.259123 GGAATTTGTCTCCTTTGCCATGT 59.741 43.478 0.00 0.00 0.00 3.21
3445 4155 3.512724 AGGAATTTGTCTCCTTTGCCATG 59.487 43.478 0.00 0.00 40.61 3.66
3446 4156 3.782992 AGGAATTTGTCTCCTTTGCCAT 58.217 40.909 0.00 0.00 40.61 4.40
3447 4157 3.243359 AGGAATTTGTCTCCTTTGCCA 57.757 42.857 0.00 0.00 40.61 4.92
3449 4159 6.749139 ACTTTTAGGAATTTGTCTCCTTTGC 58.251 36.000 0.00 0.00 40.61 3.68
3450 4160 9.599866 AAAACTTTTAGGAATTTGTCTCCTTTG 57.400 29.630 0.00 0.00 40.61 2.77
3451 4161 9.599866 CAAAACTTTTAGGAATTTGTCTCCTTT 57.400 29.630 0.00 0.00 40.61 3.11
3452 4162 8.758829 ACAAAACTTTTAGGAATTTGTCTCCTT 58.241 29.630 0.00 0.00 40.61 3.36
3453 4163 8.306313 ACAAAACTTTTAGGAATTTGTCTCCT 57.694 30.769 0.00 0.00 45.56 3.69
3458 4168 7.201487 GCAACGACAAAACTTTTAGGAATTTGT 60.201 33.333 2.18 2.18 44.36 2.83
3459 4169 7.116819 GCAACGACAAAACTTTTAGGAATTTG 58.883 34.615 0.00 0.00 37.10 2.32
3463 4173 4.094590 TCGCAACGACAAAACTTTTAGGAA 59.905 37.500 0.00 0.00 0.00 3.36
3464 4174 3.622163 TCGCAACGACAAAACTTTTAGGA 59.378 39.130 0.00 0.00 0.00 2.94
3465 4175 3.942739 TCGCAACGACAAAACTTTTAGG 58.057 40.909 0.00 0.00 0.00 2.69
3466 4176 3.417645 GCTCGCAACGACAAAACTTTTAG 59.582 43.478 0.00 0.00 0.00 1.85
3467 4177 3.356145 GCTCGCAACGACAAAACTTTTA 58.644 40.909 0.00 0.00 0.00 1.52
3469 4179 1.822581 GCTCGCAACGACAAAACTTT 58.177 45.000 0.00 0.00 0.00 2.66
3470 4180 0.315869 CGCTCGCAACGACAAAACTT 60.316 50.000 0.00 0.00 0.00 2.66
3472 4182 0.985416 GACGCTCGCAACGACAAAAC 60.985 55.000 0.00 0.00 0.00 2.43
3473 4183 1.274476 GACGCTCGCAACGACAAAA 59.726 52.632 0.00 0.00 0.00 2.44
3475 4185 3.033764 GGACGCTCGCAACGACAA 61.034 61.111 0.00 0.00 0.00 3.18
3477 4187 2.096481 TTTTGGACGCTCGCAACGAC 62.096 55.000 0.00 0.00 0.00 4.34
3478 4188 1.225376 ATTTTGGACGCTCGCAACGA 61.225 50.000 0.00 0.00 0.00 3.85
3479 4189 0.385473 AATTTTGGACGCTCGCAACG 60.385 50.000 0.00 0.00 0.00 4.10
3480 4190 1.766069 AAATTTTGGACGCTCGCAAC 58.234 45.000 0.00 0.00 0.00 4.17
3481 4191 2.389998 GAAAATTTTGGACGCTCGCAA 58.610 42.857 8.47 0.00 0.00 4.85
3482 4192 1.335506 GGAAAATTTTGGACGCTCGCA 60.336 47.619 8.47 0.00 0.00 5.10
3483 4193 1.335506 TGGAAAATTTTGGACGCTCGC 60.336 47.619 8.47 0.00 0.00 5.03
3485 4195 7.330700 TCATTTTATGGAAAATTTTGGACGCTC 59.669 33.333 8.47 0.00 41.53 5.03
3486 4196 7.158021 TCATTTTATGGAAAATTTTGGACGCT 58.842 30.769 8.47 0.00 41.53 5.07
3487 4197 7.330700 TCTCATTTTATGGAAAATTTTGGACGC 59.669 33.333 8.47 0.00 41.53 5.19
3488 4198 8.755696 TCTCATTTTATGGAAAATTTTGGACG 57.244 30.769 8.47 0.00 41.53 4.79
3491 4201 9.001542 TGCTTCTCATTTTATGGAAAATTTTGG 57.998 29.630 8.47 0.00 41.53 3.28
3497 4207 9.775854 TCATTTTGCTTCTCATTTTATGGAAAA 57.224 25.926 0.00 0.00 38.87 2.29
3499 4209 9.775854 TTTCATTTTGCTTCTCATTTTATGGAA 57.224 25.926 0.00 0.00 0.00 3.53
3500 4210 9.426837 CTTTCATTTTGCTTCTCATTTTATGGA 57.573 29.630 0.00 0.00 0.00 3.41
3501 4211 8.662141 CCTTTCATTTTGCTTCTCATTTTATGG 58.338 33.333 0.00 0.00 0.00 2.74
3502 4212 8.173130 GCCTTTCATTTTGCTTCTCATTTTATG 58.827 33.333 0.00 0.00 0.00 1.90
3504 4214 6.650390 GGCCTTTCATTTTGCTTCTCATTTTA 59.350 34.615 0.00 0.00 0.00 1.52
3505 4215 5.471116 GGCCTTTCATTTTGCTTCTCATTTT 59.529 36.000 0.00 0.00 0.00 1.82
3506 4216 4.999311 GGCCTTTCATTTTGCTTCTCATTT 59.001 37.500 0.00 0.00 0.00 2.32
3507 4217 4.040706 TGGCCTTTCATTTTGCTTCTCATT 59.959 37.500 3.32 0.00 0.00 2.57
3508 4218 3.579586 TGGCCTTTCATTTTGCTTCTCAT 59.420 39.130 3.32 0.00 0.00 2.90
3509 4219 2.964464 TGGCCTTTCATTTTGCTTCTCA 59.036 40.909 3.32 0.00 0.00 3.27
3511 4221 2.301009 CCTGGCCTTTCATTTTGCTTCT 59.699 45.455 3.32 0.00 0.00 2.85
3512 4222 2.299867 TCCTGGCCTTTCATTTTGCTTC 59.700 45.455 3.32 0.00 0.00 3.86
3513 4223 2.328319 TCCTGGCCTTTCATTTTGCTT 58.672 42.857 3.32 0.00 0.00 3.91
3514 4224 2.014010 TCCTGGCCTTTCATTTTGCT 57.986 45.000 3.32 0.00 0.00 3.91
3515 4225 2.299867 TCTTCCTGGCCTTTCATTTTGC 59.700 45.455 3.32 0.00 0.00 3.68
3516 4226 3.575687 AGTCTTCCTGGCCTTTCATTTTG 59.424 43.478 3.32 0.00 0.00 2.44
3517 4227 3.575687 CAGTCTTCCTGGCCTTTCATTTT 59.424 43.478 3.32 0.00 37.54 1.82
3518 4228 3.160269 CAGTCTTCCTGGCCTTTCATTT 58.840 45.455 3.32 0.00 37.54 2.32
3520 4230 1.988107 TCAGTCTTCCTGGCCTTTCAT 59.012 47.619 3.32 0.00 41.83 2.57
3522 4232 1.339535 CCTCAGTCTTCCTGGCCTTTC 60.340 57.143 3.32 0.00 41.83 2.62
3523 4233 0.695347 CCTCAGTCTTCCTGGCCTTT 59.305 55.000 3.32 0.00 41.83 3.11
3524 4234 0.474660 ACCTCAGTCTTCCTGGCCTT 60.475 55.000 3.32 0.00 41.83 4.35
3525 4235 0.413832 TACCTCAGTCTTCCTGGCCT 59.586 55.000 3.32 0.00 41.83 5.19
3526 4236 0.827368 CTACCTCAGTCTTCCTGGCC 59.173 60.000 0.00 0.00 41.83 5.36
3527 4237 0.827368 CCTACCTCAGTCTTCCTGGC 59.173 60.000 0.00 0.00 41.83 4.85
3528 4238 0.827368 GCCTACCTCAGTCTTCCTGG 59.173 60.000 0.00 0.00 41.83 4.45
3529 4239 0.827368 GGCCTACCTCAGTCTTCCTG 59.173 60.000 0.00 0.00 42.97 3.86
3531 4241 1.139853 CATGGCCTACCTCAGTCTTCC 59.860 57.143 3.32 0.00 36.63 3.46
3532 4242 1.474143 GCATGGCCTACCTCAGTCTTC 60.474 57.143 3.32 0.00 36.63 2.87
3533 4243 0.543749 GCATGGCCTACCTCAGTCTT 59.456 55.000 3.32 0.00 36.63 3.01
3534 4244 0.618680 TGCATGGCCTACCTCAGTCT 60.619 55.000 3.32 0.00 36.63 3.24
3535 4245 0.471617 ATGCATGGCCTACCTCAGTC 59.528 55.000 3.32 0.00 36.63 3.51
3536 4246 1.696336 CTATGCATGGCCTACCTCAGT 59.304 52.381 10.16 0.00 36.63 3.41
3538 4248 0.397941 GCTATGCATGGCCTACCTCA 59.602 55.000 23.39 0.00 36.63 3.86
3539 4249 3.239861 GCTATGCATGGCCTACCTC 57.760 57.895 23.39 0.00 36.63 3.85
3548 4258 3.359523 ATGCGCCGGCTATGCATG 61.360 61.111 31.27 14.26 46.82 4.06
3550 4260 3.279116 GAATGCGCCGGCTATGCA 61.279 61.111 26.25 26.25 43.67 3.96
3551 4261 4.030452 GGAATGCGCCGGCTATGC 62.030 66.667 26.68 21.28 40.82 3.14
3552 4262 1.723608 TTTGGAATGCGCCGGCTATG 61.724 55.000 26.68 10.55 40.82 2.23
3553 4263 0.823356 ATTTGGAATGCGCCGGCTAT 60.823 50.000 26.68 16.09 40.82 2.97
3554 4264 0.179043 TATTTGGAATGCGCCGGCTA 60.179 50.000 26.68 14.26 40.82 3.93
3555 4265 0.823356 ATATTTGGAATGCGCCGGCT 60.823 50.000 26.68 4.89 40.82 5.52
3556 4266 0.031994 AATATTTGGAATGCGCCGGC 59.968 50.000 19.07 19.07 40.52 6.13
3557 4267 1.769733 CAATATTTGGAATGCGCCGG 58.230 50.000 4.18 0.00 0.00 6.13
3568 4278 5.009410 GCCATTCTCCTCTGTCCAATATTTG 59.991 44.000 0.00 0.00 0.00 2.32
3569 4279 5.136105 GCCATTCTCCTCTGTCCAATATTT 58.864 41.667 0.00 0.00 0.00 1.40
3570 4280 4.166725 TGCCATTCTCCTCTGTCCAATATT 59.833 41.667 0.00 0.00 0.00 1.28
3571 4281 3.718434 TGCCATTCTCCTCTGTCCAATAT 59.282 43.478 0.00 0.00 0.00 1.28
3572 4282 3.114606 TGCCATTCTCCTCTGTCCAATA 58.885 45.455 0.00 0.00 0.00 1.90
3573 4283 1.918262 TGCCATTCTCCTCTGTCCAAT 59.082 47.619 0.00 0.00 0.00 3.16
3575 4285 0.907486 CTGCCATTCTCCTCTGTCCA 59.093 55.000 0.00 0.00 0.00 4.02
3577 4287 0.179936 CCCTGCCATTCTCCTCTGTC 59.820 60.000 0.00 0.00 0.00 3.51
3578 4288 0.252881 TCCCTGCCATTCTCCTCTGT 60.253 55.000 0.00 0.00 0.00 3.41
3580 4290 1.211456 CTTCCCTGCCATTCTCCTCT 58.789 55.000 0.00 0.00 0.00 3.69
3581 4291 0.465278 GCTTCCCTGCCATTCTCCTC 60.465 60.000 0.00 0.00 0.00 3.71
3582 4292 1.210204 TGCTTCCCTGCCATTCTCCT 61.210 55.000 0.00 0.00 0.00 3.69
3584 4294 1.382692 GCTGCTTCCCTGCCATTCTC 61.383 60.000 0.00 0.00 32.77 2.87
3585 4295 1.379576 GCTGCTTCCCTGCCATTCT 60.380 57.895 0.00 0.00 32.77 2.40
3586 4296 3.204418 GCTGCTTCCCTGCCATTC 58.796 61.111 0.00 0.00 32.77 2.67
3591 4301 2.363406 ATTGGGCTGCTTCCCTGC 60.363 61.111 13.72 0.00 46.67 4.85
3592 4302 2.056223 CCATTGGGCTGCTTCCCTG 61.056 63.158 13.72 5.95 46.67 4.45
3593 4303 2.361771 CCATTGGGCTGCTTCCCT 59.638 61.111 13.72 0.00 46.67 4.20
3603 4313 1.339644 CCATTTGGGGAGCCATTGGG 61.340 60.000 4.53 0.00 37.18 4.12
3604 4314 0.325484 TCCATTTGGGGAGCCATTGG 60.325 55.000 0.00 0.00 37.22 3.16
3605 4315 1.414919 CATCCATTTGGGGAGCCATTG 59.585 52.381 0.00 0.00 41.08 2.82
3607 4317 0.638292 ACATCCATTTGGGGAGCCAT 59.362 50.000 0.00 0.00 41.08 4.40
3608 4318 0.033208 GACATCCATTTGGGGAGCCA 60.033 55.000 0.00 0.00 41.08 4.75
3609 4319 1.103398 CGACATCCATTTGGGGAGCC 61.103 60.000 0.00 0.00 41.08 4.70
3610 4320 1.728490 GCGACATCCATTTGGGGAGC 61.728 60.000 0.00 0.00 41.08 4.70
3611 4321 0.107017 AGCGACATCCATTTGGGGAG 60.107 55.000 0.00 0.00 41.08 4.30
3612 4322 0.394216 CAGCGACATCCATTTGGGGA 60.394 55.000 0.00 0.00 42.21 4.81
3613 4323 0.394216 TCAGCGACATCCATTTGGGG 60.394 55.000 0.00 0.00 37.22 4.96
3614 4324 1.402968 CTTCAGCGACATCCATTTGGG 59.597 52.381 0.00 0.00 35.41 4.12
3615 4325 1.402968 CCTTCAGCGACATCCATTTGG 59.597 52.381 0.00 0.00 0.00 3.28
3616 4326 1.402968 CCCTTCAGCGACATCCATTTG 59.597 52.381 0.00 0.00 0.00 2.32
3617 4327 1.755179 CCCTTCAGCGACATCCATTT 58.245 50.000 0.00 0.00 0.00 2.32
3618 4328 0.749454 GCCCTTCAGCGACATCCATT 60.749 55.000 0.00 0.00 0.00 3.16
3620 4330 1.913951 ATGCCCTTCAGCGACATCCA 61.914 55.000 0.00 0.00 34.65 3.41
3621 4331 1.153086 ATGCCCTTCAGCGACATCC 60.153 57.895 0.00 0.00 34.65 3.51
3622 4332 0.745845 ACATGCCCTTCAGCGACATC 60.746 55.000 0.00 0.00 34.65 3.06
3626 4336 0.674581 CTTCACATGCCCTTCAGCGA 60.675 55.000 0.00 0.00 34.65 4.93
3627 4337 0.674581 TCTTCACATGCCCTTCAGCG 60.675 55.000 0.00 0.00 34.65 5.18
3629 4339 3.063510 TCTTCTTCACATGCCCTTCAG 57.936 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.