Multiple sequence alignment - TraesCS7B01G477100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G477100 chr7B 100.000 3613 0 0 1 3613 733080061 733083673 0.000000e+00 6673.0
1 TraesCS7B01G477100 chr7B 84.642 2624 328 39 1011 3613 733174760 733177329 0.000000e+00 2543.0
2 TraesCS7B01G477100 chr7B 84.991 1699 219 23 1936 3613 733142519 733144202 0.000000e+00 1692.0
3 TraesCS7B01G477100 chr7B 83.122 1653 230 32 1937 3548 733309641 733311285 0.000000e+00 1461.0
4 TraesCS7B01G477100 chr7B 85.848 1286 128 28 2332 3579 733037947 733039216 0.000000e+00 1317.0
5 TraesCS7B01G477100 chr7B 87.457 877 97 5 1012 1884 733308758 733309625 0.000000e+00 998.0
6 TraesCS7B01G477100 chr7B 79.690 1354 208 39 2307 3613 733301769 733303102 0.000000e+00 915.0
7 TraesCS7B01G477100 chr7B 85.025 808 107 6 1012 1815 733141674 733142471 0.000000e+00 809.0
8 TraesCS7B01G477100 chr7B 83.791 802 107 12 1036 1831 733028637 733029421 0.000000e+00 739.0
9 TraesCS7B01G477100 chr7B 83.069 821 122 11 1013 1831 733296821 733297626 0.000000e+00 730.0
10 TraesCS7B01G477100 chr7B 84.341 364 43 7 3259 3613 733145560 733145918 9.600000e-91 344.0
11 TraesCS7B01G477100 chr7B 84.615 78 11 1 345 421 730911873 730911796 3.870000e-10 76.8
12 TraesCS7B01G477100 chr7D 85.992 2627 273 46 1011 3613 630253305 630255860 0.000000e+00 2724.0
13 TraesCS7B01G477100 chr7D 85.833 1320 161 23 1947 3249 630503797 630505107 0.000000e+00 1378.0
14 TraesCS7B01G477100 chr7D 91.197 1011 77 9 892 1894 630502772 630503778 0.000000e+00 1363.0
15 TraesCS7B01G477100 chr7D 82.843 1428 189 36 2233 3613 630274889 630276307 0.000000e+00 1229.0
16 TraesCS7B01G477100 chr7D 88.000 850 88 10 2770 3612 630489833 630490675 0.000000e+00 992.0
17 TraesCS7B01G477100 chr7D 90.975 687 52 7 897 1576 630272744 630273427 0.000000e+00 917.0
18 TraesCS7B01G477100 chr7D 89.455 275 17 6 236 507 630502279 630502544 1.610000e-88 337.0
19 TraesCS7B01G477100 chr7D 78.736 348 63 8 3273 3613 630505158 630505501 4.700000e-54 222.0
20 TraesCS7B01G477100 chr7D 84.000 150 18 4 1 147 151781360 151781214 4.860000e-29 139.0
21 TraesCS7B01G477100 chr6B 88.683 1670 171 14 1960 3613 662031093 662029426 0.000000e+00 2021.0
22 TraesCS7B01G477100 chr6B 83.659 820 125 4 1012 1831 662031961 662031151 0.000000e+00 763.0
23 TraesCS7B01G477100 chr7A 78.002 2623 441 93 1070 3613 726467256 726469821 0.000000e+00 1522.0
24 TraesCS7B01G477100 chr7A 82.570 786 120 13 1936 2711 726475724 726476502 0.000000e+00 676.0
25 TraesCS7B01G477100 chr4A 82.121 1773 255 42 1317 3053 589333445 589335191 0.000000e+00 1461.0
26 TraesCS7B01G477100 chr4A 87.919 298 36 0 1011 1308 589321092 589321389 5.740000e-93 351.0
27 TraesCS7B01G477100 chr1B 81.538 1652 245 34 1942 3554 361369525 361371155 0.000000e+00 1306.0
28 TraesCS7B01G477100 chr1B 83.510 849 114 9 1011 1858 361368702 361369525 0.000000e+00 769.0
29 TraesCS7B01G477100 chr1B 75.656 1105 223 35 1973 3050 660964120 660963035 3.220000e-140 508.0
30 TraesCS7B01G477100 chr3A 86.624 157 15 4 1 154 251325462 251325615 6.200000e-38 169.0
31 TraesCS7B01G477100 chr3A 83.226 155 19 4 1 152 8736748 8736598 6.290000e-28 135.0
32 TraesCS7B01G477100 chr3B 86.076 158 14 5 1 154 279652519 279652672 2.890000e-36 163.0
33 TraesCS7B01G477100 chr5B 85.714 154 16 3 1 151 552489224 552489374 1.340000e-34 158.0
34 TraesCS7B01G477100 chr6A 85.526 152 16 4 1 149 610392116 610391968 1.740000e-33 154.0
35 TraesCS7B01G477100 chr4B 85.161 155 17 3 1 153 546085880 546085730 1.740000e-33 154.0
36 TraesCS7B01G477100 chr5D 83.439 157 16 7 1 152 448540294 448540445 1.750000e-28 137.0
37 TraesCS7B01G477100 chr3D 83.007 153 22 3 1 152 157214128 157214277 6.290000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G477100 chr7B 733080061 733083673 3612 False 6673.000000 6673 100.000000 1 3613 1 chr7B.!!$F3 3612
1 TraesCS7B01G477100 chr7B 733174760 733177329 2569 False 2543.000000 2543 84.642000 1011 3613 1 chr7B.!!$F4 2602
2 TraesCS7B01G477100 chr7B 733037947 733039216 1269 False 1317.000000 1317 85.848000 2332 3579 1 chr7B.!!$F2 1247
3 TraesCS7B01G477100 chr7B 733308758 733311285 2527 False 1229.500000 1461 85.289500 1012 3548 2 chr7B.!!$F8 2536
4 TraesCS7B01G477100 chr7B 733141674 733145918 4244 False 948.333333 1692 84.785667 1012 3613 3 chr7B.!!$F7 2601
5 TraesCS7B01G477100 chr7B 733301769 733303102 1333 False 915.000000 915 79.690000 2307 3613 1 chr7B.!!$F6 1306
6 TraesCS7B01G477100 chr7B 733028637 733029421 784 False 739.000000 739 83.791000 1036 1831 1 chr7B.!!$F1 795
7 TraesCS7B01G477100 chr7B 733296821 733297626 805 False 730.000000 730 83.069000 1013 1831 1 chr7B.!!$F5 818
8 TraesCS7B01G477100 chr7D 630253305 630255860 2555 False 2724.000000 2724 85.992000 1011 3613 1 chr7D.!!$F1 2602
9 TraesCS7B01G477100 chr7D 630272744 630276307 3563 False 1073.000000 1229 86.909000 897 3613 2 chr7D.!!$F3 2716
10 TraesCS7B01G477100 chr7D 630489833 630490675 842 False 992.000000 992 88.000000 2770 3612 1 chr7D.!!$F2 842
11 TraesCS7B01G477100 chr7D 630502279 630505501 3222 False 825.000000 1378 86.305250 236 3613 4 chr7D.!!$F4 3377
12 TraesCS7B01G477100 chr6B 662029426 662031961 2535 True 1392.000000 2021 86.171000 1012 3613 2 chr6B.!!$R1 2601
13 TraesCS7B01G477100 chr7A 726467256 726469821 2565 False 1522.000000 1522 78.002000 1070 3613 1 chr7A.!!$F1 2543
14 TraesCS7B01G477100 chr7A 726475724 726476502 778 False 676.000000 676 82.570000 1936 2711 1 chr7A.!!$F2 775
15 TraesCS7B01G477100 chr4A 589333445 589335191 1746 False 1461.000000 1461 82.121000 1317 3053 1 chr4A.!!$F2 1736
16 TraesCS7B01G477100 chr1B 361368702 361371155 2453 False 1037.500000 1306 82.524000 1011 3554 2 chr1B.!!$F1 2543
17 TraesCS7B01G477100 chr1B 660963035 660964120 1085 True 508.000000 508 75.656000 1973 3050 1 chr1B.!!$R1 1077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.024238 CGATCTCGTTTGCTTCAGCG 59.976 55.0 0.00 0.0 38.06 5.18 F
594 598 0.033504 GTCACCGGTCGATATGCCAT 59.966 55.0 2.59 0.0 0.00 4.40 F
900 907 0.034186 TCCATGGCTCCATCAACCAC 60.034 55.0 6.96 0.0 35.99 4.16 F
958 969 0.112218 CCTCCATCAACCACCACCAA 59.888 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1643 0.109723 CGAGGGTGGTTTTTCCCAGA 59.890 55.000 3.04 0.00 45.64 3.86 R
2342 3767 1.355381 AGACCAGCACCAATGGAATCA 59.645 47.619 6.16 0.00 40.51 2.57 R
2377 3802 2.072298 GCATATCTCTTCCATCACCGC 58.928 52.381 0.00 0.00 0.00 5.68 R
2643 4086 3.219176 AGCACCATATCATGAACCTGG 57.781 47.619 16.07 16.07 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.124011 CTTCACAATTTGCACTGCGT 57.876 45.000 0.00 0.00 0.00 5.24
20 21 1.782569 CTTCACAATTTGCACTGCGTG 59.217 47.619 0.00 4.61 36.51 5.34
21 22 0.737804 TCACAATTTGCACTGCGTGT 59.262 45.000 9.76 0.00 35.75 4.49
22 23 1.133982 TCACAATTTGCACTGCGTGTT 59.866 42.857 9.76 0.00 35.75 3.32
23 24 1.925847 CACAATTTGCACTGCGTGTTT 59.074 42.857 9.76 0.00 35.75 2.83
24 25 2.348059 CACAATTTGCACTGCGTGTTTT 59.652 40.909 9.76 0.00 35.75 2.43
25 26 2.999355 ACAATTTGCACTGCGTGTTTTT 59.001 36.364 9.76 0.00 35.75 1.94
26 27 3.181522 ACAATTTGCACTGCGTGTTTTTG 60.182 39.130 9.76 10.29 35.75 2.44
27 28 1.354040 TTTGCACTGCGTGTTTTTGG 58.646 45.000 9.76 0.00 35.75 3.28
28 29 0.459237 TTGCACTGCGTGTTTTTGGG 60.459 50.000 9.76 0.00 35.75 4.12
29 30 2.237066 GCACTGCGTGTTTTTGGGC 61.237 57.895 9.76 0.00 35.75 5.36
30 31 1.437160 CACTGCGTGTTTTTGGGCT 59.563 52.632 1.24 0.00 0.00 5.19
31 32 0.594796 CACTGCGTGTTTTTGGGCTC 60.595 55.000 1.24 0.00 0.00 4.70
32 33 1.370414 CTGCGTGTTTTTGGGCTCG 60.370 57.895 0.00 0.00 0.00 5.03
33 34 2.729491 GCGTGTTTTTGGGCTCGC 60.729 61.111 0.00 0.00 39.67 5.03
34 35 2.718731 CGTGTTTTTGGGCTCGCA 59.281 55.556 0.00 0.00 0.00 5.10
35 36 1.285641 CGTGTTTTTGGGCTCGCAT 59.714 52.632 0.00 0.00 0.00 4.73
36 37 0.318614 CGTGTTTTTGGGCTCGCATT 60.319 50.000 0.00 0.00 0.00 3.56
37 38 1.864565 GTGTTTTTGGGCTCGCATTT 58.135 45.000 0.00 0.00 0.00 2.32
38 39 2.209273 GTGTTTTTGGGCTCGCATTTT 58.791 42.857 0.00 0.00 0.00 1.82
39 40 2.611751 GTGTTTTTGGGCTCGCATTTTT 59.388 40.909 0.00 0.00 0.00 1.94
40 41 2.611292 TGTTTTTGGGCTCGCATTTTTG 59.389 40.909 0.00 0.00 0.00 2.44
41 42 1.876322 TTTTGGGCTCGCATTTTTGG 58.124 45.000 0.00 0.00 0.00 3.28
42 43 0.034616 TTTGGGCTCGCATTTTTGGG 59.965 50.000 0.00 0.00 0.00 4.12
43 44 2.125552 GGGCTCGCATTTTTGGGC 60.126 61.111 0.00 0.00 0.00 5.36
44 45 2.656055 GGCTCGCATTTTTGGGCA 59.344 55.556 0.00 0.00 0.00 5.36
45 46 1.218854 GGCTCGCATTTTTGGGCAT 59.781 52.632 0.00 0.00 0.00 4.40
46 47 0.459489 GGCTCGCATTTTTGGGCATA 59.541 50.000 0.00 0.00 0.00 3.14
47 48 1.069049 GGCTCGCATTTTTGGGCATAT 59.931 47.619 0.00 0.00 0.00 1.78
48 49 2.129607 GCTCGCATTTTTGGGCATATG 58.870 47.619 0.00 0.00 0.00 1.78
49 50 2.223782 GCTCGCATTTTTGGGCATATGA 60.224 45.455 6.97 0.00 0.00 2.15
50 51 3.553508 GCTCGCATTTTTGGGCATATGAT 60.554 43.478 6.97 0.00 0.00 2.45
51 52 4.321156 GCTCGCATTTTTGGGCATATGATA 60.321 41.667 6.97 0.00 0.00 2.15
52 53 5.771469 CTCGCATTTTTGGGCATATGATAA 58.229 37.500 6.97 0.00 0.00 1.75
53 54 6.154203 TCGCATTTTTGGGCATATGATAAA 57.846 33.333 6.97 1.34 0.00 1.40
54 55 5.982516 TCGCATTTTTGGGCATATGATAAAC 59.017 36.000 6.97 0.00 0.00 2.01
55 56 5.177327 CGCATTTTTGGGCATATGATAAACC 59.823 40.000 6.97 0.00 0.00 3.27
56 57 6.054295 GCATTTTTGGGCATATGATAAACCA 58.946 36.000 6.97 3.34 0.00 3.67
57 58 6.711645 GCATTTTTGGGCATATGATAAACCAT 59.288 34.615 6.97 0.00 0.00 3.55
58 59 7.308109 GCATTTTTGGGCATATGATAAACCATG 60.308 37.037 6.97 9.30 0.00 3.66
59 60 6.805016 TTTTGGGCATATGATAAACCATGT 57.195 33.333 6.97 0.00 0.00 3.21
60 61 6.805016 TTTGGGCATATGATAAACCATGTT 57.195 33.333 6.97 0.00 0.00 2.71
61 62 5.787953 TGGGCATATGATAAACCATGTTG 57.212 39.130 6.97 0.00 0.00 3.33
62 63 4.588106 TGGGCATATGATAAACCATGTTGG 59.412 41.667 6.97 0.00 45.02 3.77
63 64 4.021192 GGGCATATGATAAACCATGTTGGG 60.021 45.833 6.97 0.00 43.37 4.12
64 65 4.559153 GCATATGATAAACCATGTTGGGC 58.441 43.478 6.97 0.00 43.37 5.36
65 66 4.561326 GCATATGATAAACCATGTTGGGCC 60.561 45.833 6.97 0.00 43.37 5.80
66 67 2.917713 TGATAAACCATGTTGGGCCT 57.082 45.000 4.53 0.00 43.37 5.19
67 68 2.455557 TGATAAACCATGTTGGGCCTG 58.544 47.619 4.53 0.00 43.37 4.85
68 69 1.756538 GATAAACCATGTTGGGCCTGG 59.243 52.381 4.53 6.53 43.37 4.45
69 70 0.902516 TAAACCATGTTGGGCCTGGC 60.903 55.000 11.05 11.05 43.37 4.85
76 77 4.645131 TTGGGCCTGGCGCGTTAA 62.645 61.111 27.58 15.66 44.57 2.01
77 78 4.645131 TGGGCCTGGCGCGTTAAA 62.645 61.111 27.58 9.74 44.57 1.52
78 79 3.138128 GGGCCTGGCGCGTTAAAT 61.138 61.111 20.40 0.00 38.94 1.40
79 80 2.102161 GGCCTGGCGCGTTAAATG 59.898 61.111 13.40 0.00 38.94 2.32
80 81 2.696759 GGCCTGGCGCGTTAAATGT 61.697 57.895 13.40 0.00 38.94 2.71
81 82 1.514014 GCCTGGCGCGTTAAATGTG 60.514 57.895 8.43 0.00 0.00 3.21
82 83 1.514014 CCTGGCGCGTTAAATGTGC 60.514 57.895 8.43 6.06 39.75 4.57
83 84 1.501741 CTGGCGCGTTAAATGTGCT 59.498 52.632 8.43 0.00 40.30 4.40
84 85 0.724549 CTGGCGCGTTAAATGTGCTA 59.275 50.000 8.43 7.25 40.30 3.49
85 86 0.444651 TGGCGCGTTAAATGTGCTAC 59.555 50.000 8.43 0.91 40.30 3.58
86 87 0.444651 GGCGCGTTAAATGTGCTACA 59.555 50.000 8.43 0.00 40.30 2.74
87 88 1.529010 GGCGCGTTAAATGTGCTACAG 60.529 52.381 8.43 0.00 40.30 2.74
88 89 1.127951 GCGCGTTAAATGTGCTACAGT 59.872 47.619 8.43 0.00 37.62 3.55
89 90 2.757896 CGCGTTAAATGTGCTACAGTG 58.242 47.619 0.00 0.00 0.00 3.66
90 91 2.410392 CGCGTTAAATGTGCTACAGTGA 59.590 45.455 0.00 0.00 0.00 3.41
91 92 3.720920 CGCGTTAAATGTGCTACAGTGAC 60.721 47.826 0.00 0.00 0.00 3.67
92 93 3.720920 GCGTTAAATGTGCTACAGTGACG 60.721 47.826 0.00 14.85 38.58 4.35
93 94 3.671459 CGTTAAATGTGCTACAGTGACGA 59.329 43.478 14.40 0.00 38.15 4.20
94 95 4.432503 CGTTAAATGTGCTACAGTGACGAC 60.433 45.833 14.40 0.00 38.15 4.34
95 96 2.812358 AATGTGCTACAGTGACGACA 57.188 45.000 0.00 0.00 0.00 4.35
96 97 2.065993 ATGTGCTACAGTGACGACAC 57.934 50.000 10.10 10.10 46.24 3.67
108 109 4.898328 GTGACGACACGCTAAAACTATT 57.102 40.909 1.56 0.00 37.28 1.73
109 110 5.260027 GTGACGACACGCTAAAACTATTT 57.740 39.130 1.56 0.00 37.28 1.40
110 111 5.673029 GTGACGACACGCTAAAACTATTTT 58.327 37.500 1.56 0.00 37.28 1.82
111 112 6.810286 GTGACGACACGCTAAAACTATTTTA 58.190 36.000 1.56 0.00 37.28 1.52
112 113 6.946584 GTGACGACACGCTAAAACTATTTTAG 59.053 38.462 14.13 14.13 43.63 1.85
119 120 4.172796 CTAAAACTATTTTAGCGCGCGA 57.827 40.909 37.18 19.65 43.74 5.87
120 121 3.458779 AAAACTATTTTAGCGCGCGAA 57.541 38.095 37.18 25.07 0.00 4.70
121 122 3.458779 AAACTATTTTAGCGCGCGAAA 57.541 38.095 37.18 31.06 0.00 3.46
122 123 2.430828 ACTATTTTAGCGCGCGAAAC 57.569 45.000 33.79 16.84 0.00 2.78
123 124 1.997606 ACTATTTTAGCGCGCGAAACT 59.002 42.857 33.79 29.98 0.00 2.66
124 125 2.414138 ACTATTTTAGCGCGCGAAACTT 59.586 40.909 33.79 25.95 0.00 2.66
125 126 2.325509 ATTTTAGCGCGCGAAACTTT 57.674 40.000 33.79 20.65 0.00 2.66
126 127 2.108178 TTTTAGCGCGCGAAACTTTT 57.892 40.000 33.79 14.34 0.00 2.27
127 128 1.390820 TTTAGCGCGCGAAACTTTTG 58.609 45.000 37.18 0.23 0.00 2.44
128 129 0.305313 TTAGCGCGCGAAACTTTTGT 59.695 45.000 37.18 6.40 0.00 2.83
129 130 0.383737 TAGCGCGCGAAACTTTTGTG 60.384 50.000 37.18 0.00 0.00 3.33
130 131 2.829834 CGCGCGAAACTTTTGTGC 59.170 55.556 28.94 14.92 35.85 4.57
131 132 1.936880 CGCGCGAAACTTTTGTGCA 60.937 52.632 28.94 0.00 38.99 4.57
132 133 1.553185 GCGCGAAACTTTTGTGCAC 59.447 52.632 12.10 10.75 38.89 4.57
133 134 1.807242 GCGCGAAACTTTTGTGCACC 61.807 55.000 15.69 0.00 38.89 5.01
134 135 0.524392 CGCGAAACTTTTGTGCACCA 60.524 50.000 15.69 0.00 0.00 4.17
135 136 1.199624 GCGAAACTTTTGTGCACCAG 58.800 50.000 15.69 10.21 0.00 4.00
136 137 1.469079 GCGAAACTTTTGTGCACCAGT 60.469 47.619 15.69 10.89 0.00 4.00
137 138 2.874849 CGAAACTTTTGTGCACCAGTT 58.125 42.857 15.69 16.19 0.00 3.16
138 139 2.598192 CGAAACTTTTGTGCACCAGTTG 59.402 45.455 20.74 10.15 29.78 3.16
139 140 3.671971 CGAAACTTTTGTGCACCAGTTGA 60.672 43.478 20.74 0.00 29.78 3.18
140 141 3.951775 AACTTTTGTGCACCAGTTGAA 57.048 38.095 19.82 3.57 0.00 2.69
141 142 3.508744 ACTTTTGTGCACCAGTTGAAG 57.491 42.857 15.69 6.47 0.00 3.02
142 143 3.088532 ACTTTTGTGCACCAGTTGAAGA 58.911 40.909 15.69 0.00 0.00 2.87
143 144 3.701040 ACTTTTGTGCACCAGTTGAAGAT 59.299 39.130 15.69 0.00 0.00 2.40
144 145 3.713858 TTTGTGCACCAGTTGAAGATG 57.286 42.857 15.69 0.00 0.00 2.90
145 146 0.953727 TGTGCACCAGTTGAAGATGC 59.046 50.000 15.69 0.00 36.81 3.91
146 147 1.242076 GTGCACCAGTTGAAGATGCT 58.758 50.000 5.22 0.00 37.20 3.79
147 148 1.198637 GTGCACCAGTTGAAGATGCTC 59.801 52.381 5.22 0.00 37.20 4.26
148 149 1.072806 TGCACCAGTTGAAGATGCTCT 59.927 47.619 0.00 0.00 37.20 4.09
149 150 2.302733 TGCACCAGTTGAAGATGCTCTA 59.697 45.455 0.00 0.00 37.20 2.43
150 151 3.244526 TGCACCAGTTGAAGATGCTCTAA 60.245 43.478 0.00 0.00 37.20 2.10
151 152 3.373439 GCACCAGTTGAAGATGCTCTAAG 59.627 47.826 0.00 0.00 33.44 2.18
152 153 4.825422 CACCAGTTGAAGATGCTCTAAGA 58.175 43.478 0.00 0.00 0.00 2.10
153 154 4.869297 CACCAGTTGAAGATGCTCTAAGAG 59.131 45.833 0.00 0.00 0.00 2.85
154 155 4.530161 ACCAGTTGAAGATGCTCTAAGAGT 59.470 41.667 0.00 0.00 31.39 3.24
155 156 5.108517 CCAGTTGAAGATGCTCTAAGAGTC 58.891 45.833 0.00 0.00 31.39 3.36
156 157 4.797868 CAGTTGAAGATGCTCTAAGAGTCG 59.202 45.833 0.00 0.00 31.39 4.18
157 158 3.428746 TGAAGATGCTCTAAGAGTCGC 57.571 47.619 0.00 0.00 31.39 5.19
158 159 2.755103 TGAAGATGCTCTAAGAGTCGCA 59.245 45.455 0.00 2.22 36.75 5.10
159 160 2.861462 AGATGCTCTAAGAGTCGCAC 57.139 50.000 0.00 0.00 34.93 5.34
160 161 1.407258 AGATGCTCTAAGAGTCGCACC 59.593 52.381 0.00 0.00 34.93 5.01
161 162 0.461961 ATGCTCTAAGAGTCGCACCC 59.538 55.000 0.00 0.00 34.93 4.61
162 163 0.898326 TGCTCTAAGAGTCGCACCCA 60.898 55.000 0.00 0.00 31.39 4.51
163 164 0.179124 GCTCTAAGAGTCGCACCCAG 60.179 60.000 0.00 0.00 31.39 4.45
164 165 1.178276 CTCTAAGAGTCGCACCCAGT 58.822 55.000 0.00 0.00 0.00 4.00
165 166 1.133407 CTCTAAGAGTCGCACCCAGTC 59.867 57.143 0.00 0.00 0.00 3.51
166 167 1.178276 CTAAGAGTCGCACCCAGTCT 58.822 55.000 0.00 0.00 0.00 3.24
167 168 1.133407 CTAAGAGTCGCACCCAGTCTC 59.867 57.143 0.00 0.00 0.00 3.36
168 169 1.867919 AAGAGTCGCACCCAGTCTCG 61.868 60.000 0.00 0.00 0.00 4.04
169 170 3.343788 GAGTCGCACCCAGTCTCGG 62.344 68.421 0.00 0.00 0.00 4.63
170 171 3.371063 GTCGCACCCAGTCTCGGA 61.371 66.667 0.00 0.00 0.00 4.55
171 172 3.062466 TCGCACCCAGTCTCGGAG 61.062 66.667 0.00 0.00 0.00 4.63
172 173 3.374402 CGCACCCAGTCTCGGAGT 61.374 66.667 4.69 0.00 0.00 3.85
173 174 2.574399 GCACCCAGTCTCGGAGTC 59.426 66.667 4.69 0.00 0.00 3.36
174 175 2.878429 CACCCAGTCTCGGAGTCG 59.122 66.667 4.69 0.00 37.82 4.18
175 176 1.972223 CACCCAGTCTCGGAGTCGT 60.972 63.158 4.69 0.00 37.69 4.34
176 177 1.228490 ACCCAGTCTCGGAGTCGTT 60.228 57.895 4.69 0.00 37.69 3.85
177 178 0.826672 ACCCAGTCTCGGAGTCGTTT 60.827 55.000 4.69 0.00 37.69 3.60
178 179 0.109226 CCCAGTCTCGGAGTCGTTTC 60.109 60.000 4.69 0.00 37.69 2.78
179 180 0.109226 CCAGTCTCGGAGTCGTTTCC 60.109 60.000 4.69 0.00 37.69 3.13
180 181 0.109226 CAGTCTCGGAGTCGTTTCCC 60.109 60.000 4.69 0.00 37.69 3.97
181 182 1.154073 GTCTCGGAGTCGTTTCCCG 60.154 63.158 4.69 0.00 44.22 5.14
182 183 2.506438 CTCGGAGTCGTTTCCCGC 60.506 66.667 0.00 0.00 42.70 6.13
183 184 3.277211 CTCGGAGTCGTTTCCCGCA 62.277 63.158 0.00 0.00 42.70 5.69
184 185 2.125673 CGGAGTCGTTTCCCGCAT 60.126 61.111 0.00 0.00 36.62 4.73
185 186 2.452813 CGGAGTCGTTTCCCGCATG 61.453 63.158 0.00 0.00 36.62 4.06
186 187 1.079405 GGAGTCGTTTCCCGCATGA 60.079 57.895 0.00 0.00 36.19 3.07
187 188 1.084370 GGAGTCGTTTCCCGCATGAG 61.084 60.000 0.00 0.00 36.19 2.90
188 189 1.696832 GAGTCGTTTCCCGCATGAGC 61.697 60.000 0.00 0.00 36.19 4.26
189 190 1.741770 GTCGTTTCCCGCATGAGCT 60.742 57.895 0.00 0.00 39.10 4.09
190 191 1.003839 TCGTTTCCCGCATGAGCTT 60.004 52.632 0.00 0.00 39.10 3.74
191 192 1.019278 TCGTTTCCCGCATGAGCTTC 61.019 55.000 0.00 0.00 39.10 3.86
192 193 1.803289 GTTTCCCGCATGAGCTTCC 59.197 57.895 0.00 0.00 39.10 3.46
193 194 1.745115 TTTCCCGCATGAGCTTCCG 60.745 57.895 0.00 0.00 39.10 4.30
194 195 3.680620 TTCCCGCATGAGCTTCCGG 62.681 63.158 0.00 0.00 40.39 5.14
195 196 4.161295 CCCGCATGAGCTTCCGGA 62.161 66.667 0.00 0.00 43.20 5.14
196 197 2.109799 CCGCATGAGCTTCCGGAT 59.890 61.111 4.15 0.00 43.20 4.18
197 198 2.249535 CCGCATGAGCTTCCGGATG 61.250 63.158 4.15 9.44 43.20 3.51
198 199 2.890109 CGCATGAGCTTCCGGATGC 61.890 63.158 29.78 29.78 39.10 3.91
199 200 2.550101 GCATGAGCTTCCGGATGCC 61.550 63.158 32.20 24.48 36.08 4.40
211 212 1.643832 GGATGCCGATCTCGTTTGC 59.356 57.895 0.00 0.00 37.74 3.68
212 213 0.811616 GGATGCCGATCTCGTTTGCT 60.812 55.000 0.00 0.00 37.74 3.91
213 214 1.009829 GATGCCGATCTCGTTTGCTT 58.990 50.000 0.00 0.00 37.74 3.91
214 215 1.004504 GATGCCGATCTCGTTTGCTTC 60.005 52.381 0.00 0.32 37.74 3.86
215 216 0.320334 TGCCGATCTCGTTTGCTTCA 60.320 50.000 0.00 0.00 37.74 3.02
216 217 0.371645 GCCGATCTCGTTTGCTTCAG 59.628 55.000 0.00 0.00 37.74 3.02
217 218 0.371645 CCGATCTCGTTTGCTTCAGC 59.628 55.000 0.00 0.00 38.55 4.26
218 219 0.024238 CGATCTCGTTTGCTTCAGCG 59.976 55.000 0.00 0.00 38.06 5.18
219 220 1.350193 GATCTCGTTTGCTTCAGCGA 58.650 50.000 0.00 0.00 45.83 4.93
221 222 1.131420 CTCGTTTGCTTCAGCGAGC 59.869 57.895 0.00 3.26 45.83 5.03
222 223 1.287730 CTCGTTTGCTTCAGCGAGCT 61.288 55.000 10.36 0.00 45.83 4.09
223 224 1.131420 CGTTTGCTTCAGCGAGCTC 59.869 57.895 2.73 2.73 45.83 4.09
224 225 1.499502 GTTTGCTTCAGCGAGCTCC 59.500 57.895 8.47 0.68 45.83 4.70
225 226 0.952984 GTTTGCTTCAGCGAGCTCCT 60.953 55.000 8.47 3.35 45.83 3.69
226 227 0.671781 TTTGCTTCAGCGAGCTCCTC 60.672 55.000 8.47 0.00 45.83 3.71
227 228 2.202864 GCTTCAGCGAGCTCCTCC 60.203 66.667 8.47 0.00 39.57 4.30
228 229 2.720134 GCTTCAGCGAGCTCCTCCT 61.720 63.158 8.47 0.00 39.57 3.69
229 230 1.388065 GCTTCAGCGAGCTCCTCCTA 61.388 60.000 8.47 0.00 39.57 2.94
230 231 0.383949 CTTCAGCGAGCTCCTCCTAC 59.616 60.000 8.47 0.00 0.00 3.18
231 232 0.033991 TTCAGCGAGCTCCTCCTACT 60.034 55.000 8.47 0.00 0.00 2.57
232 233 0.464735 TCAGCGAGCTCCTCCTACTC 60.465 60.000 8.47 0.00 0.00 2.59
234 235 4.544001 CGAGCTCCTCCTACTCGT 57.456 61.111 8.47 0.00 46.19 4.18
261 262 2.051345 GTTTTGTCGGCGCCACAG 60.051 61.111 28.98 10.81 0.00 3.66
291 293 2.897350 GCGAGGCATTCCTTCCCG 60.897 66.667 0.00 0.00 44.46 5.14
308 310 4.746309 GTGCAGGCAGGGATGGCA 62.746 66.667 4.56 0.00 36.76 4.92
309 311 3.982111 TGCAGGCAGGGATGGCAA 61.982 61.111 4.56 0.00 36.76 4.52
310 312 2.443390 GCAGGCAGGGATGGCAAT 60.443 61.111 4.56 0.00 36.76 3.56
342 346 3.055530 GGTGTATGCTAGCTAGGATGCAT 60.056 47.826 35.70 27.45 45.08 3.96
343 347 3.931468 GTGTATGCTAGCTAGGATGCATG 59.069 47.826 35.70 8.39 45.08 4.06
359 363 0.647410 CATGTGATGAGCGGTCGTTC 59.353 55.000 11.20 10.31 0.00 3.95
380 384 3.766591 TCTCTTCTGGTTTCCTAGAGCTG 59.233 47.826 0.00 0.00 0.00 4.24
391 395 1.067821 CCTAGAGCTGTCGATCCAACC 59.932 57.143 0.00 0.00 0.00 3.77
397 401 3.186047 GTCGATCCAACCACCGCG 61.186 66.667 0.00 0.00 0.00 6.46
419 423 4.671964 CGTTAATTCATTCACATGGCATCG 59.328 41.667 0.00 0.00 0.00 3.84
448 452 2.599082 CGCTTGATCGGTTAGTGTTCTC 59.401 50.000 0.00 0.00 0.00 2.87
468 472 2.099592 TCGGAATTCATGGCTCAATTGC 59.900 45.455 7.93 0.00 0.00 3.56
469 473 2.466846 GGAATTCATGGCTCAATTGCG 58.533 47.619 7.93 0.00 0.00 4.85
473 477 1.063006 CATGGCTCAATTGCGACGG 59.937 57.895 0.00 0.00 0.00 4.79
491 495 1.560505 GGGCATGAAGAATTGGTGGT 58.439 50.000 0.00 0.00 0.00 4.16
497 501 3.154827 TGAAGAATTGGTGGTTCTCCC 57.845 47.619 0.00 0.00 34.97 4.30
498 502 2.225017 TGAAGAATTGGTGGTTCTCCCC 60.225 50.000 0.00 0.00 34.97 4.81
515 519 1.972872 CCCCCTTGCACAGTATCATC 58.027 55.000 0.00 0.00 0.00 2.92
517 521 2.158564 CCCCCTTGCACAGTATCATCAT 60.159 50.000 0.00 0.00 0.00 2.45
520 524 4.403432 CCCCTTGCACAGTATCATCATTTT 59.597 41.667 0.00 0.00 0.00 1.82
521 525 5.105228 CCCCTTGCACAGTATCATCATTTTT 60.105 40.000 0.00 0.00 0.00 1.94
549 553 9.470399 TCTAGTCCACACTGTACTAATAATTGA 57.530 33.333 0.00 0.00 33.62 2.57
551 555 8.773404 AGTCCACACTGTACTAATAATTGAAC 57.227 34.615 0.00 0.00 0.00 3.18
552 556 8.372459 AGTCCACACTGTACTAATAATTGAACA 58.628 33.333 0.00 0.00 0.00 3.18
553 557 8.440833 GTCCACACTGTACTAATAATTGAACAC 58.559 37.037 0.00 0.00 0.00 3.32
554 558 8.372459 TCCACACTGTACTAATAATTGAACACT 58.628 33.333 0.00 0.00 0.00 3.55
555 559 8.443160 CCACACTGTACTAATAATTGAACACTG 58.557 37.037 0.00 0.00 0.00 3.66
556 560 9.203421 CACACTGTACTAATAATTGAACACTGA 57.797 33.333 0.00 0.00 0.00 3.41
557 561 9.944376 ACACTGTACTAATAATTGAACACTGAT 57.056 29.630 0.00 0.00 0.00 2.90
559 563 9.383519 ACTGTACTAATAATTGAACACTGATGG 57.616 33.333 0.00 0.00 0.00 3.51
560 564 8.208718 TGTACTAATAATTGAACACTGATGGC 57.791 34.615 0.00 0.00 0.00 4.40
561 565 7.826744 TGTACTAATAATTGAACACTGATGGCA 59.173 33.333 0.00 0.00 0.00 4.92
562 566 7.886629 ACTAATAATTGAACACTGATGGCAT 57.113 32.000 0.00 0.00 0.00 4.40
563 567 8.978874 ACTAATAATTGAACACTGATGGCATA 57.021 30.769 0.00 0.00 0.00 3.14
564 568 9.060347 ACTAATAATTGAACACTGATGGCATAG 57.940 33.333 0.00 1.15 0.00 2.23
565 569 9.276590 CTAATAATTGAACACTGATGGCATAGA 57.723 33.333 0.00 0.00 0.00 1.98
566 570 5.824904 AATTGAACACTGATGGCATAGAC 57.175 39.130 0.00 0.00 0.00 2.59
567 571 4.558226 TTGAACACTGATGGCATAGACT 57.442 40.909 0.00 0.00 0.00 3.24
568 572 4.558226 TGAACACTGATGGCATAGACTT 57.442 40.909 0.00 0.00 0.00 3.01
569 573 4.910195 TGAACACTGATGGCATAGACTTT 58.090 39.130 0.00 0.00 0.00 2.66
570 574 4.696877 TGAACACTGATGGCATAGACTTTG 59.303 41.667 0.00 0.00 0.00 2.77
571 575 4.292186 ACACTGATGGCATAGACTTTGT 57.708 40.909 0.00 0.00 0.00 2.83
572 576 4.256920 ACACTGATGGCATAGACTTTGTC 58.743 43.478 0.00 0.00 0.00 3.18
573 577 4.256110 CACTGATGGCATAGACTTTGTCA 58.744 43.478 0.00 2.58 34.60 3.58
574 578 4.696877 CACTGATGGCATAGACTTTGTCAA 59.303 41.667 0.00 0.00 34.60 3.18
575 579 4.940046 ACTGATGGCATAGACTTTGTCAAG 59.060 41.667 0.00 1.62 34.60 3.02
576 580 4.910195 TGATGGCATAGACTTTGTCAAGT 58.090 39.130 0.00 0.00 46.64 3.16
584 588 1.949465 ACTTTGTCAAGTCACCGGTC 58.051 50.000 2.59 0.00 39.15 4.79
585 589 0.859232 CTTTGTCAAGTCACCGGTCG 59.141 55.000 2.59 0.00 0.00 4.79
586 590 0.460722 TTTGTCAAGTCACCGGTCGA 59.539 50.000 2.59 2.87 0.00 4.20
587 591 0.677288 TTGTCAAGTCACCGGTCGAT 59.323 50.000 2.59 0.00 0.00 3.59
588 592 1.536940 TGTCAAGTCACCGGTCGATA 58.463 50.000 2.59 0.00 0.00 2.92
589 593 2.097036 TGTCAAGTCACCGGTCGATAT 58.903 47.619 2.59 0.00 0.00 1.63
590 594 2.159296 TGTCAAGTCACCGGTCGATATG 60.159 50.000 2.59 9.45 0.00 1.78
591 595 1.202371 TCAAGTCACCGGTCGATATGC 60.202 52.381 2.59 0.00 0.00 3.14
592 596 0.104304 AAGTCACCGGTCGATATGCC 59.896 55.000 2.59 0.00 0.00 4.40
593 597 1.040893 AGTCACCGGTCGATATGCCA 61.041 55.000 2.59 0.00 0.00 4.92
594 598 0.033504 GTCACCGGTCGATATGCCAT 59.966 55.000 2.59 0.00 0.00 4.40
595 599 1.271379 GTCACCGGTCGATATGCCATA 59.729 52.381 2.59 0.00 0.00 2.74
596 600 2.094182 GTCACCGGTCGATATGCCATAT 60.094 50.000 2.59 0.00 0.00 1.78
597 601 2.565391 TCACCGGTCGATATGCCATATT 59.435 45.455 2.59 0.00 0.00 1.28
598 602 3.007506 TCACCGGTCGATATGCCATATTT 59.992 43.478 2.59 0.00 0.00 1.40
599 603 3.751175 CACCGGTCGATATGCCATATTTT 59.249 43.478 2.59 0.00 0.00 1.82
600 604 4.000988 ACCGGTCGATATGCCATATTTTC 58.999 43.478 0.00 0.00 0.00 2.29
601 605 4.253685 CCGGTCGATATGCCATATTTTCT 58.746 43.478 0.00 0.00 0.00 2.52
602 606 4.695455 CCGGTCGATATGCCATATTTTCTT 59.305 41.667 0.00 0.00 0.00 2.52
603 607 5.163854 CCGGTCGATATGCCATATTTTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
604 608 5.163854 CGGTCGATATGCCATATTTTCTTCC 60.164 44.000 0.00 0.00 0.00 3.46
605 609 5.705441 GGTCGATATGCCATATTTTCTTCCA 59.295 40.000 0.00 0.00 0.00 3.53
606 610 6.128172 GGTCGATATGCCATATTTTCTTCCAG 60.128 42.308 0.00 0.00 0.00 3.86
607 611 6.650807 GTCGATATGCCATATTTTCTTCCAGA 59.349 38.462 0.00 0.00 0.00 3.86
608 612 6.650807 TCGATATGCCATATTTTCTTCCAGAC 59.349 38.462 0.00 0.00 0.00 3.51
609 613 6.128172 CGATATGCCATATTTTCTTCCAGACC 60.128 42.308 0.00 0.00 0.00 3.85
610 614 4.591321 TGCCATATTTTCTTCCAGACCT 57.409 40.909 0.00 0.00 0.00 3.85
611 615 4.272489 TGCCATATTTTCTTCCAGACCTG 58.728 43.478 0.00 0.00 0.00 4.00
612 616 4.018506 TGCCATATTTTCTTCCAGACCTGA 60.019 41.667 0.00 0.00 0.00 3.86
613 617 5.136105 GCCATATTTTCTTCCAGACCTGAT 58.864 41.667 0.00 0.00 0.00 2.90
614 618 5.240403 GCCATATTTTCTTCCAGACCTGATC 59.760 44.000 0.00 0.00 0.00 2.92
615 619 6.359804 CCATATTTTCTTCCAGACCTGATCA 58.640 40.000 0.00 0.00 0.00 2.92
616 620 6.830324 CCATATTTTCTTCCAGACCTGATCAA 59.170 38.462 0.00 0.00 0.00 2.57
617 621 7.201767 CCATATTTTCTTCCAGACCTGATCAAC 60.202 40.741 0.00 0.00 0.00 3.18
618 622 4.982241 TTTCTTCCAGACCTGATCAACT 57.018 40.909 0.00 0.00 0.00 3.16
619 623 4.543590 TTCTTCCAGACCTGATCAACTC 57.456 45.455 0.00 0.00 0.00 3.01
620 624 2.834549 TCTTCCAGACCTGATCAACTCC 59.165 50.000 0.00 0.00 0.00 3.85
621 625 2.630889 TCCAGACCTGATCAACTCCT 57.369 50.000 0.00 0.00 0.00 3.69
622 626 2.907892 TCCAGACCTGATCAACTCCTT 58.092 47.619 0.00 0.00 0.00 3.36
623 627 2.568956 TCCAGACCTGATCAACTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
624 628 2.304180 CCAGACCTGATCAACTCCTTGT 59.696 50.000 0.00 0.00 0.00 3.16
625 629 3.332919 CAGACCTGATCAACTCCTTGTG 58.667 50.000 0.00 0.00 0.00 3.33
626 630 2.975489 AGACCTGATCAACTCCTTGTGT 59.025 45.455 0.00 0.00 0.00 3.72
627 631 3.392616 AGACCTGATCAACTCCTTGTGTT 59.607 43.478 0.00 0.00 0.00 3.32
628 632 4.137543 GACCTGATCAACTCCTTGTGTTT 58.862 43.478 0.00 0.00 0.00 2.83
629 633 3.885297 ACCTGATCAACTCCTTGTGTTTG 59.115 43.478 0.00 0.00 0.00 2.93
630 634 4.136796 CCTGATCAACTCCTTGTGTTTGA 58.863 43.478 0.00 0.00 0.00 2.69
631 635 4.763793 CCTGATCAACTCCTTGTGTTTGAT 59.236 41.667 0.00 0.00 0.00 2.57
632 636 5.242393 CCTGATCAACTCCTTGTGTTTGATT 59.758 40.000 0.00 0.00 0.00 2.57
633 637 6.075762 TGATCAACTCCTTGTGTTTGATTG 57.924 37.500 0.00 0.00 0.00 2.67
634 638 5.593909 TGATCAACTCCTTGTGTTTGATTGT 59.406 36.000 0.00 0.00 0.00 2.71
635 639 6.770303 TGATCAACTCCTTGTGTTTGATTGTA 59.230 34.615 0.00 0.00 0.00 2.41
636 640 7.448161 TGATCAACTCCTTGTGTTTGATTGTAT 59.552 33.333 0.00 0.00 0.00 2.29
637 641 6.969366 TCAACTCCTTGTGTTTGATTGTATG 58.031 36.000 0.00 0.00 0.00 2.39
638 642 5.964958 ACTCCTTGTGTTTGATTGTATGG 57.035 39.130 0.00 0.00 0.00 2.74
639 643 5.630121 ACTCCTTGTGTTTGATTGTATGGA 58.370 37.500 0.00 0.00 0.00 3.41
640 644 5.473504 ACTCCTTGTGTTTGATTGTATGGAC 59.526 40.000 0.00 0.00 0.00 4.02
641 645 5.380900 TCCTTGTGTTTGATTGTATGGACA 58.619 37.500 0.00 0.00 0.00 4.02
659 663 5.350633 TGGACAAAGTTGCTTTCTTGATTG 58.649 37.500 0.00 0.00 30.60 2.67
662 666 2.712057 AGTTGCTTTCTTGATTGGCG 57.288 45.000 0.00 0.00 0.00 5.69
684 688 0.749454 ATGAAAGCCAGGTCCGATGC 60.749 55.000 0.00 0.00 0.00 3.91
693 697 0.982852 AGGTCCGATGCTTCATCCCA 60.983 55.000 0.08 0.00 37.57 4.37
696 700 0.982852 TCCGATGCTTCATCCCACCT 60.983 55.000 0.08 0.00 37.57 4.00
716 723 3.197116 CCTTCCCAGGTACACGAACTAAT 59.803 47.826 0.00 0.00 35.06 1.73
723 730 4.387862 CAGGTACACGAACTAATTGGTCAC 59.612 45.833 0.00 0.00 31.33 3.67
724 731 3.681417 GGTACACGAACTAATTGGTCACC 59.319 47.826 0.00 0.00 31.33 4.02
735 742 7.083875 ACTAATTGGTCACCATAATTGTTCG 57.916 36.000 0.00 0.00 31.53 3.95
739 746 4.250464 TGGTCACCATAATTGTTCGTCTC 58.750 43.478 0.00 0.00 0.00 3.36
741 748 4.092968 GGTCACCATAATTGTTCGTCTCAC 59.907 45.833 0.00 0.00 0.00 3.51
749 756 3.485463 TTGTTCGTCTCACCAGGAAAT 57.515 42.857 0.00 0.00 0.00 2.17
753 760 4.036262 TGTTCGTCTCACCAGGAAATTTTG 59.964 41.667 0.00 0.00 0.00 2.44
778 785 0.610232 CTGGGCTTTACTTGGCAGCT 60.610 55.000 0.00 0.00 33.76 4.24
779 786 0.178964 TGGGCTTTACTTGGCAGCTT 60.179 50.000 0.00 0.00 33.76 3.74
792 799 1.871772 CAGCTTGGCTTCCACGAAG 59.128 57.895 0.00 0.00 42.03 3.79
812 819 2.484889 GCTTCCTAGCAATAACCGAGG 58.515 52.381 0.00 0.00 46.95 4.63
813 820 2.484889 CTTCCTAGCAATAACCGAGGC 58.515 52.381 0.00 0.00 0.00 4.70
814 821 1.491668 TCCTAGCAATAACCGAGGCA 58.508 50.000 0.00 0.00 0.00 4.75
815 822 2.047061 TCCTAGCAATAACCGAGGCAT 58.953 47.619 0.00 0.00 0.00 4.40
816 823 2.438021 TCCTAGCAATAACCGAGGCATT 59.562 45.455 0.00 0.00 0.00 3.56
817 824 2.549754 CCTAGCAATAACCGAGGCATTG 59.450 50.000 10.84 10.84 33.69 2.82
818 825 3.256620 GCAATAACCGAGGCATTGC 57.743 52.632 19.48 19.48 45.32 3.56
819 826 0.740737 GCAATAACCGAGGCATTGCT 59.259 50.000 23.62 0.00 46.97 3.91
820 827 1.134946 GCAATAACCGAGGCATTGCTT 59.865 47.619 23.62 0.00 46.97 3.91
821 828 2.357637 GCAATAACCGAGGCATTGCTTA 59.642 45.455 23.62 0.00 46.97 3.09
822 829 3.548818 GCAATAACCGAGGCATTGCTTAG 60.549 47.826 23.62 0.87 46.97 2.18
823 830 2.325583 TAACCGAGGCATTGCTTAGG 57.674 50.000 16.59 16.59 36.58 2.69
824 831 1.032114 AACCGAGGCATTGCTTAGGC 61.032 55.000 17.81 0.00 34.12 3.93
841 848 1.823899 GCACGTCCCATTCCCATCC 60.824 63.158 0.00 0.00 0.00 3.51
848 855 1.846439 TCCCATTCCCATCCTGAAGAC 59.154 52.381 0.00 0.00 0.00 3.01
850 857 2.648059 CCATTCCCATCCTGAAGACAC 58.352 52.381 0.00 0.00 0.00 3.67
852 859 0.036388 TTCCCATCCTGAAGACACGC 60.036 55.000 0.00 0.00 0.00 5.34
855 862 1.296392 CATCCTGAAGACACGCCCA 59.704 57.895 0.00 0.00 0.00 5.36
879 886 1.736645 ACGCATACACACCACGCTC 60.737 57.895 0.00 0.00 0.00 5.03
880 887 2.452813 CGCATACACACCACGCTCC 61.453 63.158 0.00 0.00 0.00 4.70
881 888 1.079127 GCATACACACCACGCTCCT 60.079 57.895 0.00 0.00 0.00 3.69
882 889 1.084370 GCATACACACCACGCTCCTC 61.084 60.000 0.00 0.00 0.00 3.71
883 890 0.460284 CATACACACCACGCTCCTCC 60.460 60.000 0.00 0.00 0.00 4.30
884 891 0.902984 ATACACACCACGCTCCTCCA 60.903 55.000 0.00 0.00 0.00 3.86
885 892 0.902984 TACACACCACGCTCCTCCAT 60.903 55.000 0.00 0.00 0.00 3.41
886 893 1.742880 CACACCACGCTCCTCCATG 60.743 63.158 0.00 0.00 0.00 3.66
887 894 2.124983 CACCACGCTCCTCCATGG 60.125 66.667 4.97 4.97 38.26 3.66
888 895 4.101448 ACCACGCTCCTCCATGGC 62.101 66.667 6.96 0.00 35.49 4.40
889 896 3.790437 CCACGCTCCTCCATGGCT 61.790 66.667 6.96 0.00 35.26 4.75
890 897 2.202987 CACGCTCCTCCATGGCTC 60.203 66.667 6.96 0.00 35.26 4.70
891 898 3.474570 ACGCTCCTCCATGGCTCC 61.475 66.667 6.96 0.00 35.26 4.70
892 899 3.473647 CGCTCCTCCATGGCTCCA 61.474 66.667 6.96 0.00 35.26 3.86
893 900 2.815945 CGCTCCTCCATGGCTCCAT 61.816 63.158 6.96 0.00 37.08 3.41
894 901 1.072852 GCTCCTCCATGGCTCCATC 59.927 63.158 6.96 0.00 33.90 3.51
895 902 1.703014 GCTCCTCCATGGCTCCATCA 61.703 60.000 6.96 0.00 33.90 3.07
896 903 0.841961 CTCCTCCATGGCTCCATCAA 59.158 55.000 6.96 0.00 33.90 2.57
897 904 0.548031 TCCTCCATGGCTCCATCAAC 59.452 55.000 6.96 0.00 33.90 3.18
898 905 0.466922 CCTCCATGGCTCCATCAACC 60.467 60.000 6.96 0.00 33.90 3.77
899 906 0.256752 CTCCATGGCTCCATCAACCA 59.743 55.000 6.96 0.00 37.99 3.67
900 907 0.034186 TCCATGGCTCCATCAACCAC 60.034 55.000 6.96 0.00 35.99 4.16
901 908 1.039233 CCATGGCTCCATCAACCACC 61.039 60.000 0.00 0.00 35.99 4.61
902 909 0.323633 CATGGCTCCATCAACCACCA 60.324 55.000 0.00 0.00 35.99 4.17
909 916 0.609131 CCATCAACCACCACCTCACC 60.609 60.000 0.00 0.00 0.00 4.02
910 917 0.955428 CATCAACCACCACCTCACCG 60.955 60.000 0.00 0.00 0.00 4.94
929 936 4.426112 CGCCTCGCTCTGCTCACA 62.426 66.667 0.00 0.00 0.00 3.58
949 956 4.396166 CACAACCATTACTCCTCCATCAAC 59.604 45.833 0.00 0.00 0.00 3.18
958 969 0.112218 CCTCCATCAACCACCACCAA 59.888 55.000 0.00 0.00 0.00 3.67
997 1009 1.758514 TAGCGGCCAGAAGAGAGGG 60.759 63.158 2.24 0.00 0.00 4.30
1123 1135 0.250234 CAAGGACATCGCCTTCCTCA 59.750 55.000 0.00 0.00 44.89 3.86
1311 1336 1.289380 GTTCGTGAAGAGGACCGCT 59.711 57.895 0.00 0.00 0.00 5.52
1366 1391 1.286849 TCGGTACCCAGATCAAGGAGA 59.713 52.381 6.25 0.00 0.00 3.71
1535 1585 2.420687 GCAGGGACCAGGTTATCTCTTG 60.421 54.545 0.00 0.00 0.00 3.02
1536 1586 2.171448 CAGGGACCAGGTTATCTCTTGG 59.829 54.545 0.00 0.00 0.00 3.61
1537 1587 1.134068 GGGACCAGGTTATCTCTTGGC 60.134 57.143 0.00 0.00 0.00 4.52
1593 1643 0.999712 CTATTGTTGGAGGTGGGGGT 59.000 55.000 0.00 0.00 0.00 4.95
1602 1652 1.388217 AGGTGGGGGTCTGGGAAAA 60.388 57.895 0.00 0.00 0.00 2.29
1722 1772 8.455903 TCTTGAAAGATGTCTTGTCTCAAATT 57.544 30.769 8.75 0.00 36.12 1.82
1770 1820 1.007238 TCGGAGAGGTGGGAGAAAGAT 59.993 52.381 0.00 0.00 0.00 2.40
1884 1938 5.554437 TGTATCCTGACACAACCAGTTAA 57.446 39.130 0.00 0.00 0.00 2.01
1887 1941 6.653320 TGTATCCTGACACAACCAGTTAATTC 59.347 38.462 0.00 0.00 0.00 2.17
1891 1945 5.299279 CCTGACACAACCAGTTAATTCTTGT 59.701 40.000 0.00 0.00 0.00 3.16
1894 1948 6.545666 TGACACAACCAGTTAATTCTTGTGAT 59.454 34.615 18.04 8.02 40.26 3.06
1895 1949 6.738114 ACACAACCAGTTAATTCTTGTGATG 58.262 36.000 18.04 3.77 40.26 3.07
1896 1950 6.151691 CACAACCAGTTAATTCTTGTGATGG 58.848 40.000 10.42 0.00 40.26 3.51
1897 1951 5.163513 CAACCAGTTAATTCTTGTGATGGC 58.836 41.667 0.00 0.00 0.00 4.40
1898 1952 4.666512 ACCAGTTAATTCTTGTGATGGCT 58.333 39.130 0.00 0.00 0.00 4.75
1899 1953 5.079643 ACCAGTTAATTCTTGTGATGGCTT 58.920 37.500 0.00 0.00 0.00 4.35
1900 1954 5.047802 ACCAGTTAATTCTTGTGATGGCTTG 60.048 40.000 0.00 0.00 0.00 4.01
1903 1957 5.954150 AGTTAATTCTTGTGATGGCTTGGAT 59.046 36.000 0.00 0.00 0.00 3.41
1906 1960 6.401047 AATTCTTGTGATGGCTTGGATATG 57.599 37.500 0.00 0.00 0.00 1.78
1907 1961 4.508551 TCTTGTGATGGCTTGGATATGT 57.491 40.909 0.00 0.00 0.00 2.29
1908 1962 4.858850 TCTTGTGATGGCTTGGATATGTT 58.141 39.130 0.00 0.00 0.00 2.71
1910 1964 6.422333 TCTTGTGATGGCTTGGATATGTTAA 58.578 36.000 0.00 0.00 0.00 2.01
1913 1967 7.275888 TGTGATGGCTTGGATATGTTAATTC 57.724 36.000 0.00 0.00 0.00 2.17
1914 1968 7.062322 TGTGATGGCTTGGATATGTTAATTCT 58.938 34.615 0.00 0.00 0.00 2.40
1915 1969 8.217111 TGTGATGGCTTGGATATGTTAATTCTA 58.783 33.333 0.00 0.00 0.00 2.10
1917 1971 9.453572 TGATGGCTTGGATATGTTAATTCTATC 57.546 33.333 0.00 0.00 0.00 2.08
1918 1972 9.678260 GATGGCTTGGATATGTTAATTCTATCT 57.322 33.333 0.00 0.00 0.00 1.98
1919 1973 9.678260 ATGGCTTGGATATGTTAATTCTATCTC 57.322 33.333 0.00 0.00 0.00 2.75
1920 1974 8.659527 TGGCTTGGATATGTTAATTCTATCTCA 58.340 33.333 0.00 0.00 0.00 3.27
1922 1976 9.935241 GCTTGGATATGTTAATTCTATCTCAGA 57.065 33.333 0.00 0.00 0.00 3.27
1937 1991 6.936335 TCTATCTCAGACAAAATCAGTTGCAA 59.064 34.615 0.00 0.00 31.29 4.08
2051 2109 2.301870 TCTAAGAGCAGCTTTTCCCGAA 59.698 45.455 0.43 0.00 38.05 4.30
2188 2250 5.740290 TCCCGAAGACTGTTCTTTAAGAT 57.260 39.130 0.00 0.00 42.53 2.40
2377 3802 4.125703 GCTGGTCTTTCATATGAGAGTGG 58.874 47.826 19.63 11.07 0.00 4.00
2397 3822 2.072298 GCGGTGATGGAAGAGATATGC 58.928 52.381 0.00 0.00 0.00 3.14
2435 3860 5.546499 ACTTAGTTACTGGGATCTTCCACAA 59.454 40.000 0.00 0.00 38.64 3.33
2451 3876 3.938963 TCCACAACACTTGAAGACTTGTC 59.061 43.478 0.00 0.00 0.00 3.18
2567 3993 4.788100 CGTGGAAATTTGTATCAAGAAGCG 59.212 41.667 0.00 0.00 0.00 4.68
2570 3996 5.652014 TGGAAATTTGTATCAAGAAGCGGAT 59.348 36.000 0.00 0.00 0.00 4.18
2595 4021 7.760131 AGTTGTTTCAATGAACTTGTCAATG 57.240 32.000 0.00 0.00 40.50 2.82
2596 4022 7.546358 AGTTGTTTCAATGAACTTGTCAATGA 58.454 30.769 0.00 0.00 43.12 2.57
2601 4027 7.990541 TTCAATGAACTTGTCAATGAACTTG 57.009 32.000 3.33 0.00 46.56 3.16
2603 4029 7.195646 TCAATGAACTTGTCAATGAACTTGTC 58.804 34.615 0.00 0.00 42.10 3.18
2605 4031 6.507958 TGAACTTGTCAATGAACTTGTCAA 57.492 33.333 0.00 0.00 40.50 3.18
2607 4033 8.219546 TGAACTTGTCAATGAACTTGTCAATA 57.780 30.769 0.00 0.00 40.47 1.90
2608 4034 8.344831 TGAACTTGTCAATGAACTTGTCAATAG 58.655 33.333 0.00 0.00 40.47 1.73
2609 4035 7.807977 ACTTGTCAATGAACTTGTCAATAGT 57.192 32.000 0.00 0.00 40.47 2.12
2611 4037 8.131100 ACTTGTCAATGAACTTGTCAATAGTTG 58.869 33.333 0.00 0.00 40.47 3.16
2643 4086 8.694394 GTTGACAGTTTTGAAGAGAAATATTGC 58.306 33.333 0.00 0.00 0.00 3.56
2729 4175 5.583495 TGTTTTAAACGGTGTCTCCAATTG 58.417 37.500 3.28 0.00 35.57 2.32
2994 4462 7.928307 TTTGAGAATTAAGTCTGGAGGAATG 57.072 36.000 10.69 0.00 0.00 2.67
3058 4529 0.173481 TCTCGATTTGCGGGACTCTG 59.827 55.000 0.00 0.00 46.41 3.35
3123 4606 5.602328 TGGTGCGCCTATTTGTTTGCAAA 62.602 43.478 18.96 8.05 41.00 3.68
3252 4741 9.565213 CATCTAACAAAATTGAGAAAGATCACC 57.435 33.333 0.00 0.00 0.00 4.02
3294 4834 6.291377 TGAATGCTACAGAGAAAAACTGAGT 58.709 36.000 0.00 0.00 38.55 3.41
3325 4868 1.118356 GGGGTTGGGCAATGACAACA 61.118 55.000 18.11 0.00 46.56 3.33
3353 4896 9.832445 TCAATATCTTTATACTGGTGGAGAAAC 57.168 33.333 0.00 0.00 0.00 2.78
3360 4903 2.625639 ACTGGTGGAGAAACAGGAGAT 58.374 47.619 0.00 0.00 36.57 2.75
3388 4931 2.276409 GGGATCCATGCTGCACCA 59.724 61.111 15.23 0.00 0.00 4.17
3416 4959 5.641709 GCACCTCCAAAATCTTAAACTAGC 58.358 41.667 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.124011 ACGCAGTGCAAATTGTGAAG 57.876 45.000 16.83 0.00 42.51 3.02
14 15 1.370414 CGAGCCCAAAAACACGCAG 60.370 57.895 0.00 0.00 0.00 5.18
15 16 2.718731 CGAGCCCAAAAACACGCA 59.281 55.556 0.00 0.00 0.00 5.24
16 17 2.729491 GCGAGCCCAAAAACACGC 60.729 61.111 0.00 0.00 38.60 5.34
17 18 0.318614 AATGCGAGCCCAAAAACACG 60.319 50.000 0.00 0.00 0.00 4.49
18 19 1.864565 AAATGCGAGCCCAAAAACAC 58.135 45.000 0.00 0.00 0.00 3.32
19 20 2.611225 AAAATGCGAGCCCAAAAACA 57.389 40.000 0.00 0.00 0.00 2.83
20 21 2.032117 CCAAAAATGCGAGCCCAAAAAC 60.032 45.455 0.00 0.00 0.00 2.43
21 22 2.216898 CCAAAAATGCGAGCCCAAAAA 58.783 42.857 0.00 0.00 0.00 1.94
22 23 1.542108 CCCAAAAATGCGAGCCCAAAA 60.542 47.619 0.00 0.00 0.00 2.44
23 24 0.034616 CCCAAAAATGCGAGCCCAAA 59.965 50.000 0.00 0.00 0.00 3.28
24 25 1.670590 CCCAAAAATGCGAGCCCAA 59.329 52.632 0.00 0.00 0.00 4.12
25 26 2.941616 GCCCAAAAATGCGAGCCCA 61.942 57.895 0.00 0.00 0.00 5.36
26 27 2.125552 GCCCAAAAATGCGAGCCC 60.126 61.111 0.00 0.00 0.00 5.19
27 28 0.459489 TATGCCCAAAAATGCGAGCC 59.541 50.000 0.00 0.00 0.00 4.70
28 29 2.129607 CATATGCCCAAAAATGCGAGC 58.870 47.619 0.00 0.00 0.00 5.03
29 30 3.713858 TCATATGCCCAAAAATGCGAG 57.286 42.857 0.00 0.00 0.00 5.03
30 31 5.781210 TTATCATATGCCCAAAAATGCGA 57.219 34.783 0.00 0.00 0.00 5.10
31 32 5.177327 GGTTTATCATATGCCCAAAAATGCG 59.823 40.000 0.00 0.00 0.00 4.73
32 33 6.054295 TGGTTTATCATATGCCCAAAAATGC 58.946 36.000 0.00 0.00 0.00 3.56
33 34 7.716123 ACATGGTTTATCATATGCCCAAAAATG 59.284 33.333 0.00 7.87 0.00 2.32
34 35 7.804147 ACATGGTTTATCATATGCCCAAAAAT 58.196 30.769 0.00 0.00 0.00 1.82
35 36 7.192852 ACATGGTTTATCATATGCCCAAAAA 57.807 32.000 0.00 0.00 0.00 1.94
36 37 6.805016 ACATGGTTTATCATATGCCCAAAA 57.195 33.333 0.00 0.00 0.00 2.44
37 38 6.407865 CCAACATGGTTTATCATATGCCCAAA 60.408 38.462 0.00 0.00 31.35 3.28
38 39 5.070180 CCAACATGGTTTATCATATGCCCAA 59.930 40.000 0.00 0.00 31.35 4.12
39 40 4.588106 CCAACATGGTTTATCATATGCCCA 59.412 41.667 0.00 0.00 31.35 5.36
40 41 4.021192 CCCAACATGGTTTATCATATGCCC 60.021 45.833 0.00 0.00 35.17 5.36
41 42 4.561326 GCCCAACATGGTTTATCATATGCC 60.561 45.833 0.00 0.00 35.17 4.40
42 43 4.559153 GCCCAACATGGTTTATCATATGC 58.441 43.478 0.00 0.00 35.17 3.14
43 44 4.834496 AGGCCCAACATGGTTTATCATATG 59.166 41.667 0.00 0.00 35.17 1.78
44 45 4.834496 CAGGCCCAACATGGTTTATCATAT 59.166 41.667 0.00 0.00 35.17 1.78
45 46 4.214310 CAGGCCCAACATGGTTTATCATA 58.786 43.478 0.00 0.00 35.17 2.15
46 47 3.033184 CAGGCCCAACATGGTTTATCAT 58.967 45.455 0.00 0.00 35.17 2.45
47 48 2.455557 CAGGCCCAACATGGTTTATCA 58.544 47.619 0.00 0.00 35.17 2.15
48 49 1.756538 CCAGGCCCAACATGGTTTATC 59.243 52.381 0.00 0.00 35.17 1.75
49 50 1.864669 CCAGGCCCAACATGGTTTAT 58.135 50.000 0.00 0.00 35.17 1.40
50 51 0.902516 GCCAGGCCCAACATGGTTTA 60.903 55.000 9.55 0.00 35.17 2.01
51 52 2.216331 GCCAGGCCCAACATGGTTT 61.216 57.895 9.55 0.00 35.17 3.27
52 53 2.604382 GCCAGGCCCAACATGGTT 60.604 61.111 9.55 0.00 35.17 3.67
59 60 4.645131 TTAACGCGCCAGGCCCAA 62.645 61.111 5.73 0.00 38.94 4.12
60 61 3.929334 ATTTAACGCGCCAGGCCCA 62.929 57.895 5.73 0.00 38.94 5.36
61 62 3.138128 ATTTAACGCGCCAGGCCC 61.138 61.111 5.73 0.00 38.94 5.80
62 63 2.102161 CATTTAACGCGCCAGGCC 59.898 61.111 5.73 0.00 38.94 5.19
63 64 1.514014 CACATTTAACGCGCCAGGC 60.514 57.895 5.73 0.00 38.69 4.85
64 65 1.514014 GCACATTTAACGCGCCAGG 60.514 57.895 5.73 0.00 0.00 4.45
65 66 0.724549 TAGCACATTTAACGCGCCAG 59.275 50.000 5.73 0.00 0.00 4.85
66 67 0.444651 GTAGCACATTTAACGCGCCA 59.555 50.000 5.73 0.00 0.00 5.69
67 68 0.444651 TGTAGCACATTTAACGCGCC 59.555 50.000 5.73 0.00 0.00 6.53
68 69 1.127951 ACTGTAGCACATTTAACGCGC 59.872 47.619 5.73 0.00 0.00 6.86
69 70 2.410392 TCACTGTAGCACATTTAACGCG 59.590 45.455 3.53 3.53 0.00 6.01
70 71 3.720920 CGTCACTGTAGCACATTTAACGC 60.721 47.826 0.00 0.00 0.00 4.84
71 72 3.671459 TCGTCACTGTAGCACATTTAACG 59.329 43.478 0.00 0.00 0.00 3.18
72 73 4.446385 TGTCGTCACTGTAGCACATTTAAC 59.554 41.667 0.00 0.00 0.00 2.01
73 74 4.446385 GTGTCGTCACTGTAGCACATTTAA 59.554 41.667 5.50 0.00 40.98 1.52
74 75 3.985279 GTGTCGTCACTGTAGCACATTTA 59.015 43.478 5.50 0.00 40.98 1.40
75 76 2.800544 GTGTCGTCACTGTAGCACATTT 59.199 45.455 5.50 0.00 40.98 2.32
76 77 2.404215 GTGTCGTCACTGTAGCACATT 58.596 47.619 5.50 0.00 40.98 2.71
77 78 1.666023 CGTGTCGTCACTGTAGCACAT 60.666 52.381 10.95 0.00 41.89 3.21
78 79 0.317519 CGTGTCGTCACTGTAGCACA 60.318 55.000 10.95 0.00 41.89 4.57
79 80 1.606350 GCGTGTCGTCACTGTAGCAC 61.606 60.000 10.95 0.00 41.89 4.40
80 81 1.371267 GCGTGTCGTCACTGTAGCA 60.371 57.895 10.95 0.00 41.89 3.49
81 82 0.167470 TAGCGTGTCGTCACTGTAGC 59.833 55.000 10.95 6.74 41.89 3.58
82 83 2.606717 TTAGCGTGTCGTCACTGTAG 57.393 50.000 10.95 0.00 41.89 2.74
83 84 3.044986 GTTTTAGCGTGTCGTCACTGTA 58.955 45.455 10.95 0.00 41.89 2.74
84 85 1.856597 GTTTTAGCGTGTCGTCACTGT 59.143 47.619 10.95 0.77 41.89 3.55
85 86 2.124903 AGTTTTAGCGTGTCGTCACTG 58.875 47.619 10.95 5.88 41.89 3.66
86 87 2.503920 AGTTTTAGCGTGTCGTCACT 57.496 45.000 10.95 0.00 41.89 3.41
87 88 4.898328 AATAGTTTTAGCGTGTCGTCAC 57.102 40.909 2.47 2.47 40.79 3.67
88 89 5.910637 AAAATAGTTTTAGCGTGTCGTCA 57.089 34.783 0.00 0.00 0.00 4.35
99 100 4.580855 TTCGCGCGCTAAAATAGTTTTA 57.419 36.364 30.48 0.00 34.19 1.52
100 101 3.458779 TTCGCGCGCTAAAATAGTTTT 57.541 38.095 30.48 0.00 36.67 2.43
101 102 3.120442 AGTTTCGCGCGCTAAAATAGTTT 60.120 39.130 29.00 10.46 0.00 2.66
102 103 2.414138 AGTTTCGCGCGCTAAAATAGTT 59.586 40.909 29.00 11.99 0.00 2.24
103 104 1.997606 AGTTTCGCGCGCTAAAATAGT 59.002 42.857 29.00 13.46 0.00 2.12
104 105 2.713927 AGTTTCGCGCGCTAAAATAG 57.286 45.000 29.00 12.71 0.00 1.73
105 106 3.458779 AAAGTTTCGCGCGCTAAAATA 57.541 38.095 29.00 8.21 0.00 1.40
106 107 2.325509 AAAGTTTCGCGCGCTAAAAT 57.674 40.000 29.00 25.84 0.00 1.82
107 108 1.776333 CAAAAGTTTCGCGCGCTAAAA 59.224 42.857 29.00 24.31 0.00 1.52
108 109 1.268133 ACAAAAGTTTCGCGCGCTAAA 60.268 42.857 30.48 27.36 0.00 1.85
109 110 0.305313 ACAAAAGTTTCGCGCGCTAA 59.695 45.000 30.48 22.72 0.00 3.09
110 111 0.383737 CACAAAAGTTTCGCGCGCTA 60.384 50.000 30.48 17.01 0.00 4.26
111 112 1.654137 CACAAAAGTTTCGCGCGCT 60.654 52.632 30.48 14.48 0.00 5.92
112 113 2.829834 CACAAAAGTTTCGCGCGC 59.170 55.556 27.95 23.91 0.00 6.86
113 114 1.936880 TGCACAAAAGTTTCGCGCG 60.937 52.632 26.76 26.76 0.00 6.86
114 115 1.553185 GTGCACAAAAGTTTCGCGC 59.447 52.632 13.17 0.00 0.00 6.86
115 116 0.524392 TGGTGCACAAAAGTTTCGCG 60.524 50.000 20.43 0.00 0.00 5.87
116 117 1.199624 CTGGTGCACAAAAGTTTCGC 58.800 50.000 20.43 0.00 0.00 4.70
117 118 2.559998 ACTGGTGCACAAAAGTTTCG 57.440 45.000 20.43 0.00 0.00 3.46
118 119 3.843999 TCAACTGGTGCACAAAAGTTTC 58.156 40.909 22.08 4.23 30.59 2.78
119 120 3.951775 TCAACTGGTGCACAAAAGTTT 57.048 38.095 22.08 10.37 30.59 2.66
120 121 3.509575 TCTTCAACTGGTGCACAAAAGTT 59.490 39.130 20.43 20.20 33.20 2.66
121 122 3.088532 TCTTCAACTGGTGCACAAAAGT 58.911 40.909 20.43 15.51 0.00 2.66
122 123 3.781079 TCTTCAACTGGTGCACAAAAG 57.219 42.857 20.43 14.85 0.00 2.27
123 124 3.737663 GCATCTTCAACTGGTGCACAAAA 60.738 43.478 20.43 2.32 35.93 2.44
124 125 2.223782 GCATCTTCAACTGGTGCACAAA 60.224 45.455 20.43 5.14 35.93 2.83
125 126 1.337703 GCATCTTCAACTGGTGCACAA 59.662 47.619 20.43 6.43 35.93 3.33
126 127 0.953727 GCATCTTCAACTGGTGCACA 59.046 50.000 20.43 3.92 35.93 4.57
127 128 1.198637 GAGCATCTTCAACTGGTGCAC 59.801 52.381 8.80 8.80 38.23 4.57
128 129 1.527034 GAGCATCTTCAACTGGTGCA 58.473 50.000 1.84 0.00 38.23 4.57
141 142 1.537135 GGGTGCGACTCTTAGAGCATC 60.537 57.143 9.44 2.89 41.88 3.91
142 143 0.461961 GGGTGCGACTCTTAGAGCAT 59.538 55.000 9.44 0.00 41.88 3.79
143 144 0.898326 TGGGTGCGACTCTTAGAGCA 60.898 55.000 9.44 0.00 37.26 4.26
144 145 0.179124 CTGGGTGCGACTCTTAGAGC 60.179 60.000 9.44 1.57 32.04 4.09
145 146 1.133407 GACTGGGTGCGACTCTTAGAG 59.867 57.143 7.82 7.82 35.52 2.43
146 147 1.174783 GACTGGGTGCGACTCTTAGA 58.825 55.000 0.00 0.00 0.00 2.10
147 148 1.133407 GAGACTGGGTGCGACTCTTAG 59.867 57.143 0.00 0.00 0.00 2.18
148 149 1.174783 GAGACTGGGTGCGACTCTTA 58.825 55.000 0.00 0.00 0.00 2.10
149 150 1.867919 CGAGACTGGGTGCGACTCTT 61.868 60.000 0.00 0.00 0.00 2.85
150 151 2.336478 CGAGACTGGGTGCGACTCT 61.336 63.158 0.00 0.00 0.00 3.24
151 152 2.179517 CGAGACTGGGTGCGACTC 59.820 66.667 0.00 0.00 0.00 3.36
152 153 3.374402 CCGAGACTGGGTGCGACT 61.374 66.667 0.00 0.00 0.00 4.18
153 154 3.343788 CTCCGAGACTGGGTGCGAC 62.344 68.421 3.16 0.00 0.00 5.19
154 155 3.062466 CTCCGAGACTGGGTGCGA 61.062 66.667 3.16 0.00 0.00 5.10
155 156 3.343788 GACTCCGAGACTGGGTGCG 62.344 68.421 1.33 0.00 0.00 5.34
156 157 2.574399 GACTCCGAGACTGGGTGC 59.426 66.667 1.33 0.00 0.00 5.01
157 158 1.524863 AACGACTCCGAGACTGGGTG 61.525 60.000 1.33 3.73 39.50 4.61
158 159 0.826672 AAACGACTCCGAGACTGGGT 60.827 55.000 1.33 0.00 39.50 4.51
159 160 0.109226 GAAACGACTCCGAGACTGGG 60.109 60.000 1.33 0.00 39.50 4.45
160 161 0.109226 GGAAACGACTCCGAGACTGG 60.109 60.000 1.33 0.00 39.50 4.00
161 162 0.109226 GGGAAACGACTCCGAGACTG 60.109 60.000 1.33 0.00 39.50 3.51
162 163 2.265096 GGGAAACGACTCCGAGACT 58.735 57.895 1.33 0.00 39.50 3.24
163 164 4.885157 GGGAAACGACTCCGAGAC 57.115 61.111 1.33 0.00 39.50 3.36
173 174 1.425428 GAAGCTCATGCGGGAAACG 59.575 57.895 0.00 0.00 45.42 3.60
174 175 1.803289 GGAAGCTCATGCGGGAAAC 59.197 57.895 0.00 0.00 45.42 2.78
175 176 1.745115 CGGAAGCTCATGCGGGAAA 60.745 57.895 0.00 0.00 45.42 3.13
176 177 2.125147 CGGAAGCTCATGCGGGAA 60.125 61.111 0.00 0.00 45.42 3.97
180 181 2.890109 GCATCCGGAAGCTCATGCG 61.890 63.158 23.90 0.00 45.42 4.73
181 182 2.550101 GGCATCCGGAAGCTCATGC 61.550 63.158 28.90 22.15 40.85 4.06
182 183 2.249535 CGGCATCCGGAAGCTCATG 61.250 63.158 28.90 13.57 44.15 3.07
183 184 2.109799 CGGCATCCGGAAGCTCAT 59.890 61.111 28.90 0.00 44.15 2.90
193 194 0.811616 AGCAAACGAGATCGGCATCC 60.812 55.000 7.22 0.00 44.95 3.51
194 195 1.004504 GAAGCAAACGAGATCGGCATC 60.005 52.381 7.22 0.00 44.95 3.91
195 196 1.009829 GAAGCAAACGAGATCGGCAT 58.990 50.000 7.22 0.00 44.95 4.40
196 197 0.320334 TGAAGCAAACGAGATCGGCA 60.320 50.000 7.22 0.00 44.95 5.69
197 198 0.371645 CTGAAGCAAACGAGATCGGC 59.628 55.000 7.22 0.66 44.95 5.54
198 199 0.371645 GCTGAAGCAAACGAGATCGG 59.628 55.000 7.22 0.00 41.70 4.18
199 200 0.024238 CGCTGAAGCAAACGAGATCG 59.976 55.000 2.79 0.00 42.86 3.69
200 201 1.350193 TCGCTGAAGCAAACGAGATC 58.650 50.000 2.79 0.00 42.21 2.75
201 202 3.514777 TCGCTGAAGCAAACGAGAT 57.485 47.368 2.79 0.00 42.21 2.75
204 205 1.284982 GAGCTCGCTGAAGCAAACGA 61.285 55.000 0.00 0.00 45.00 3.85
205 206 1.131420 GAGCTCGCTGAAGCAAACG 59.869 57.895 0.00 0.00 45.00 3.60
206 207 0.952984 AGGAGCTCGCTGAAGCAAAC 60.953 55.000 7.83 0.00 45.00 2.93
207 208 0.671781 GAGGAGCTCGCTGAAGCAAA 60.672 55.000 7.83 0.00 45.00 3.68
208 209 1.079543 GAGGAGCTCGCTGAAGCAA 60.080 57.895 7.83 0.00 45.00 3.91
209 210 2.575993 GAGGAGCTCGCTGAAGCA 59.424 61.111 7.83 0.00 45.00 3.91
210 211 1.388065 TAGGAGGAGCTCGCTGAAGC 61.388 60.000 7.83 0.00 42.82 3.86
211 212 0.383949 GTAGGAGGAGCTCGCTGAAG 59.616 60.000 7.83 0.00 0.00 3.02
212 213 0.033991 AGTAGGAGGAGCTCGCTGAA 60.034 55.000 7.83 0.00 0.00 3.02
213 214 0.464735 GAGTAGGAGGAGCTCGCTGA 60.465 60.000 7.83 0.00 0.00 4.26
214 215 1.781025 CGAGTAGGAGGAGCTCGCTG 61.781 65.000 7.83 0.00 44.03 5.18
215 216 1.525077 CGAGTAGGAGGAGCTCGCT 60.525 63.158 7.83 6.01 44.03 4.93
216 217 3.027292 CGAGTAGGAGGAGCTCGC 58.973 66.667 7.83 1.84 44.03 5.03
218 219 0.741915 CCAACGAGTAGGAGGAGCTC 59.258 60.000 4.71 4.71 0.00 4.09
219 220 1.324005 GCCAACGAGTAGGAGGAGCT 61.324 60.000 0.00 0.00 0.00 4.09
220 221 1.142097 GCCAACGAGTAGGAGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
221 222 1.030488 TCGCCAACGAGTAGGAGGAG 61.030 60.000 0.00 0.00 45.12 3.69
222 223 1.001764 TCGCCAACGAGTAGGAGGA 60.002 57.895 0.00 0.00 45.12 3.71
223 224 3.599584 TCGCCAACGAGTAGGAGG 58.400 61.111 0.00 0.00 45.12 4.30
232 233 3.615099 ACAAAACTTGTCGCCAACG 57.385 47.368 0.00 0.00 40.56 4.10
261 262 2.125350 CTCGCCTCTCTTGTGGGC 60.125 66.667 0.00 0.00 42.18 5.36
291 293 4.746309 TGCCATCCCTGCCTGCAC 62.746 66.667 0.00 0.00 0.00 4.57
304 306 2.676121 CCTTCCGTGCCATTGCCA 60.676 61.111 0.00 0.00 36.33 4.92
305 307 2.676471 ACCTTCCGTGCCATTGCC 60.676 61.111 0.00 0.00 36.33 4.52
306 308 2.568090 CACCTTCCGTGCCATTGC 59.432 61.111 0.00 0.00 35.18 3.56
324 326 3.834231 TCACATGCATCCTAGCTAGCATA 59.166 43.478 18.83 5.65 45.14 3.14
331 333 1.805345 GCTCATCACATGCATCCTAGC 59.195 52.381 0.00 0.00 0.00 3.42
342 346 0.109272 GAGAACGACCGCTCATCACA 60.109 55.000 0.00 0.00 0.00 3.58
343 347 0.171455 AGAGAACGACCGCTCATCAC 59.829 55.000 0.00 0.00 33.62 3.06
359 363 3.513515 ACAGCTCTAGGAAACCAGAAGAG 59.486 47.826 0.00 0.00 37.37 2.85
380 384 3.186047 CGCGGTGGTTGGATCGAC 61.186 66.667 0.00 0.00 0.00 4.20
391 395 3.463533 TGTGAATGAATTAACGCGGTG 57.536 42.857 7.07 0.00 0.00 4.94
397 401 5.820131 TCGATGCCATGTGAATGAATTAAC 58.180 37.500 0.00 0.00 0.00 2.01
419 423 3.471495 AACCGATCAAGCGTTCAATTC 57.529 42.857 0.00 0.00 0.00 2.17
448 452 2.466846 GCAATTGAGCCATGAATTCCG 58.533 47.619 10.34 0.00 0.00 4.30
468 472 0.378257 CCAATTCTTCATGCCCGTCG 59.622 55.000 0.00 0.00 0.00 5.12
469 473 1.133025 CACCAATTCTTCATGCCCGTC 59.867 52.381 0.00 0.00 0.00 4.79
473 477 2.827921 AGAACCACCAATTCTTCATGCC 59.172 45.455 0.00 0.00 32.32 4.40
497 501 2.715749 TGATGATACTGTGCAAGGGG 57.284 50.000 0.00 0.00 0.00 4.79
498 502 5.587388 AAAATGATGATACTGTGCAAGGG 57.413 39.130 0.00 0.00 0.00 3.95
523 527 9.470399 TCAATTATTAGTACAGTGTGGACTAGA 57.530 33.333 5.88 0.00 44.03 2.43
525 529 9.865321 GTTCAATTATTAGTACAGTGTGGACTA 57.135 33.333 5.88 3.82 40.43 2.59
528 532 8.372459 AGTGTTCAATTATTAGTACAGTGTGGA 58.628 33.333 5.88 0.00 0.00 4.02
529 533 8.443160 CAGTGTTCAATTATTAGTACAGTGTGG 58.557 37.037 5.88 0.00 34.10 4.17
530 534 9.203421 TCAGTGTTCAATTATTAGTACAGTGTG 57.797 33.333 5.88 0.00 37.87 3.82
531 535 9.944376 ATCAGTGTTCAATTATTAGTACAGTGT 57.056 29.630 0.00 0.00 37.87 3.55
533 537 9.383519 CCATCAGTGTTCAATTATTAGTACAGT 57.616 33.333 0.00 0.00 0.00 3.55
534 538 8.338259 GCCATCAGTGTTCAATTATTAGTACAG 58.662 37.037 0.00 0.00 0.00 2.74
535 539 7.826744 TGCCATCAGTGTTCAATTATTAGTACA 59.173 33.333 0.00 0.00 0.00 2.90
536 540 8.208718 TGCCATCAGTGTTCAATTATTAGTAC 57.791 34.615 0.00 0.00 0.00 2.73
537 541 8.978874 ATGCCATCAGTGTTCAATTATTAGTA 57.021 30.769 0.00 0.00 0.00 1.82
538 542 7.886629 ATGCCATCAGTGTTCAATTATTAGT 57.113 32.000 0.00 0.00 0.00 2.24
540 544 9.056005 GTCTATGCCATCAGTGTTCAATTATTA 57.944 33.333 0.00 0.00 0.00 0.98
541 545 7.776969 AGTCTATGCCATCAGTGTTCAATTATT 59.223 33.333 0.00 0.00 0.00 1.40
542 546 7.285566 AGTCTATGCCATCAGTGTTCAATTAT 58.714 34.615 0.00 0.00 0.00 1.28
544 548 5.503927 AGTCTATGCCATCAGTGTTCAATT 58.496 37.500 0.00 0.00 0.00 2.32
545 549 5.108187 AGTCTATGCCATCAGTGTTCAAT 57.892 39.130 0.00 0.00 0.00 2.57
546 550 4.558226 AGTCTATGCCATCAGTGTTCAA 57.442 40.909 0.00 0.00 0.00 2.69
547 551 4.558226 AAGTCTATGCCATCAGTGTTCA 57.442 40.909 0.00 0.00 0.00 3.18
548 552 4.697352 ACAAAGTCTATGCCATCAGTGTTC 59.303 41.667 0.00 0.00 0.00 3.18
549 553 4.655963 ACAAAGTCTATGCCATCAGTGTT 58.344 39.130 0.00 0.00 0.00 3.32
550 554 4.256920 GACAAAGTCTATGCCATCAGTGT 58.743 43.478 0.00 0.00 0.00 3.55
551 555 4.256110 TGACAAAGTCTATGCCATCAGTG 58.744 43.478 0.00 0.00 33.15 3.66
552 556 4.558226 TGACAAAGTCTATGCCATCAGT 57.442 40.909 0.00 0.00 33.15 3.41
553 557 4.940046 ACTTGACAAAGTCTATGCCATCAG 59.060 41.667 0.00 0.00 43.34 2.90
554 558 4.910195 ACTTGACAAAGTCTATGCCATCA 58.090 39.130 0.00 0.00 43.34 3.07
566 570 0.859232 CGACCGGTGACTTGACAAAG 59.141 55.000 14.63 0.00 39.49 2.77
567 571 0.460722 TCGACCGGTGACTTGACAAA 59.539 50.000 14.63 0.00 0.00 2.83
568 572 0.677288 ATCGACCGGTGACTTGACAA 59.323 50.000 14.63 0.00 0.00 3.18
569 573 1.536940 TATCGACCGGTGACTTGACA 58.463 50.000 14.63 0.00 0.00 3.58
570 574 2.460918 CATATCGACCGGTGACTTGAC 58.539 52.381 14.63 0.00 0.00 3.18
571 575 1.202371 GCATATCGACCGGTGACTTGA 60.202 52.381 14.63 1.61 0.00 3.02
572 576 1.209128 GCATATCGACCGGTGACTTG 58.791 55.000 14.63 11.89 0.00 3.16
573 577 0.104304 GGCATATCGACCGGTGACTT 59.896 55.000 14.63 0.00 0.00 3.01
574 578 1.040893 TGGCATATCGACCGGTGACT 61.041 55.000 14.63 0.00 0.00 3.41
575 579 0.033504 ATGGCATATCGACCGGTGAC 59.966 55.000 14.63 0.00 0.00 3.67
576 580 1.623163 TATGGCATATCGACCGGTGA 58.377 50.000 14.63 10.89 0.00 4.02
577 581 2.672961 ATATGGCATATCGACCGGTG 57.327 50.000 14.63 4.45 0.00 4.94
578 582 3.695830 AAATATGGCATATCGACCGGT 57.304 42.857 19.73 6.92 0.00 5.28
579 583 4.253685 AGAAAATATGGCATATCGACCGG 58.746 43.478 19.73 0.00 0.00 5.28
580 584 5.163854 GGAAGAAAATATGGCATATCGACCG 60.164 44.000 19.73 0.00 0.00 4.79
581 585 5.705441 TGGAAGAAAATATGGCATATCGACC 59.295 40.000 19.73 15.62 0.00 4.79
582 586 6.650807 TCTGGAAGAAAATATGGCATATCGAC 59.349 38.462 19.73 13.18 42.31 4.20
583 587 6.768483 TCTGGAAGAAAATATGGCATATCGA 58.232 36.000 19.73 4.54 42.31 3.59
597 601 9.794828 CAAGGAGTTGATCAGGTCTGGAAGAAA 62.795 44.444 0.00 0.00 39.72 2.52
598 602 8.427274 CAAGGAGTTGATCAGGTCTGGAAGAA 62.427 46.154 0.00 0.00 39.72 2.52
599 603 2.834549 GGAGTTGATCAGGTCTGGAAGA 59.165 50.000 0.00 0.00 43.69 2.87
600 604 2.836981 AGGAGTTGATCAGGTCTGGAAG 59.163 50.000 0.00 0.00 0.00 3.46
601 605 2.907892 AGGAGTTGATCAGGTCTGGAA 58.092 47.619 0.00 0.00 0.00 3.53
602 606 2.568956 CAAGGAGTTGATCAGGTCTGGA 59.431 50.000 0.00 0.00 35.46 3.86
603 607 2.304180 ACAAGGAGTTGATCAGGTCTGG 59.696 50.000 0.00 0.00 37.10 3.86
604 608 3.244353 ACACAAGGAGTTGATCAGGTCTG 60.244 47.826 0.00 0.00 37.10 3.51
605 609 2.975489 ACACAAGGAGTTGATCAGGTCT 59.025 45.455 0.00 0.00 37.10 3.85
606 610 3.409026 ACACAAGGAGTTGATCAGGTC 57.591 47.619 0.00 0.00 37.10 3.85
607 611 3.864789 AACACAAGGAGTTGATCAGGT 57.135 42.857 0.00 0.00 37.10 4.00
608 612 4.136796 TCAAACACAAGGAGTTGATCAGG 58.863 43.478 0.00 0.00 37.10 3.86
609 613 5.954296 ATCAAACACAAGGAGTTGATCAG 57.046 39.130 0.00 0.00 37.10 2.90
610 614 5.593909 ACAATCAAACACAAGGAGTTGATCA 59.406 36.000 0.00 0.00 37.10 2.92
611 615 6.076981 ACAATCAAACACAAGGAGTTGATC 57.923 37.500 0.00 0.00 37.10 2.92
612 616 7.309377 CCATACAATCAAACACAAGGAGTTGAT 60.309 37.037 0.00 0.00 37.10 2.57
613 617 6.016360 CCATACAATCAAACACAAGGAGTTGA 60.016 38.462 0.00 0.00 37.10 3.18
614 618 6.016360 TCCATACAATCAAACACAAGGAGTTG 60.016 38.462 0.00 0.00 39.82 3.16
615 619 6.016276 GTCCATACAATCAAACACAAGGAGTT 60.016 38.462 0.00 0.00 0.00 3.01
616 620 5.473504 GTCCATACAATCAAACACAAGGAGT 59.526 40.000 0.00 0.00 0.00 3.85
617 621 5.473162 TGTCCATACAATCAAACACAAGGAG 59.527 40.000 0.00 0.00 30.91 3.69
618 622 5.380900 TGTCCATACAATCAAACACAAGGA 58.619 37.500 0.00 0.00 30.91 3.36
619 623 5.703978 TGTCCATACAATCAAACACAAGG 57.296 39.130 0.00 0.00 30.91 3.61
620 624 7.202526 ACTTTGTCCATACAATCAAACACAAG 58.797 34.615 0.00 0.00 44.85 3.16
621 625 7.106439 ACTTTGTCCATACAATCAAACACAA 57.894 32.000 0.00 0.00 44.85 3.33
622 626 6.707440 ACTTTGTCCATACAATCAAACACA 57.293 33.333 0.00 0.00 44.85 3.72
623 627 6.074356 GCAACTTTGTCCATACAATCAAACAC 60.074 38.462 0.00 0.00 44.85 3.32
624 628 5.982516 GCAACTTTGTCCATACAATCAAACA 59.017 36.000 0.00 0.00 44.85 2.83
625 629 6.215845 AGCAACTTTGTCCATACAATCAAAC 58.784 36.000 0.00 0.00 44.85 2.93
626 630 6.403866 AGCAACTTTGTCCATACAATCAAA 57.596 33.333 0.00 0.00 44.85 2.69
627 631 6.403866 AAGCAACTTTGTCCATACAATCAA 57.596 33.333 0.00 0.00 44.85 2.57
628 632 6.265196 AGAAAGCAACTTTGTCCATACAATCA 59.735 34.615 0.00 0.00 44.85 2.57
629 633 6.681777 AGAAAGCAACTTTGTCCATACAATC 58.318 36.000 0.00 0.00 44.85 2.67
630 634 6.655078 AGAAAGCAACTTTGTCCATACAAT 57.345 33.333 0.00 0.00 44.85 2.71
631 635 6.096141 TCAAGAAAGCAACTTTGTCCATACAA 59.904 34.615 0.00 0.00 43.85 2.41
632 636 5.592282 TCAAGAAAGCAACTTTGTCCATACA 59.408 36.000 0.00 0.00 33.49 2.29
633 637 6.072112 TCAAGAAAGCAACTTTGTCCATAC 57.928 37.500 0.00 0.00 33.49 2.39
634 638 6.899393 ATCAAGAAAGCAACTTTGTCCATA 57.101 33.333 0.00 0.00 33.49 2.74
635 639 5.796424 ATCAAGAAAGCAACTTTGTCCAT 57.204 34.783 0.00 0.00 33.49 3.41
636 640 5.350633 CAATCAAGAAAGCAACTTTGTCCA 58.649 37.500 0.00 0.00 33.49 4.02
637 641 4.746611 CCAATCAAGAAAGCAACTTTGTCC 59.253 41.667 0.00 0.00 33.49 4.02
638 642 4.209911 GCCAATCAAGAAAGCAACTTTGTC 59.790 41.667 0.00 0.00 33.49 3.18
639 643 4.122046 GCCAATCAAGAAAGCAACTTTGT 58.878 39.130 0.00 0.00 33.49 2.83
640 644 3.182972 CGCCAATCAAGAAAGCAACTTTG 59.817 43.478 0.00 0.00 33.49 2.77
641 645 3.383761 CGCCAATCAAGAAAGCAACTTT 58.616 40.909 0.00 0.00 36.29 2.66
642 646 2.863704 GCGCCAATCAAGAAAGCAACTT 60.864 45.455 0.00 0.00 0.00 2.66
643 647 1.336240 GCGCCAATCAAGAAAGCAACT 60.336 47.619 0.00 0.00 0.00 3.16
644 648 1.063031 GCGCCAATCAAGAAAGCAAC 58.937 50.000 0.00 0.00 0.00 4.17
645 649 0.038343 GGCGCCAATCAAGAAAGCAA 60.038 50.000 24.80 0.00 0.00 3.91
646 650 1.177895 TGGCGCCAATCAAGAAAGCA 61.178 50.000 30.74 0.00 0.00 3.91
647 651 0.174162 ATGGCGCCAATCAAGAAAGC 59.826 50.000 36.33 0.00 0.00 3.51
648 652 1.473677 TCATGGCGCCAATCAAGAAAG 59.526 47.619 36.33 14.18 0.00 2.62
649 653 1.543607 TCATGGCGCCAATCAAGAAA 58.456 45.000 36.33 6.47 0.00 2.52
659 663 3.830192 CCTGGCTTTCATGGCGCC 61.830 66.667 22.73 22.73 44.02 6.53
662 666 2.409870 CGGACCTGGCTTTCATGGC 61.410 63.158 0.00 0.00 0.00 4.40
675 679 0.815615 GTGGGATGAAGCATCGGACC 60.816 60.000 0.00 0.00 41.35 4.46
684 688 0.257039 CCTGGGAAGGTGGGATGAAG 59.743 60.000 0.00 0.00 0.00 3.02
693 697 0.683412 GTTCGTGTACCTGGGAAGGT 59.317 55.000 2.48 2.48 45.46 3.50
696 700 4.563993 CCAATTAGTTCGTGTACCTGGGAA 60.564 45.833 0.00 0.00 0.00 3.97
709 716 7.696453 CGAACAATTATGGTGACCAATTAGTTC 59.304 37.037 9.06 17.04 36.95 3.01
716 723 4.647611 AGACGAACAATTATGGTGACCAA 58.352 39.130 9.06 0.00 36.95 3.67
723 730 3.623060 CCTGGTGAGACGAACAATTATGG 59.377 47.826 0.00 0.00 0.00 2.74
724 731 4.503910 TCCTGGTGAGACGAACAATTATG 58.496 43.478 0.00 0.00 0.00 1.90
735 742 4.937201 AACCAAAATTTCCTGGTGAGAC 57.063 40.909 13.98 0.00 45.39 3.36
739 746 3.560896 CAGCAAACCAAAATTTCCTGGTG 59.439 43.478 13.98 8.40 45.39 4.17
741 748 3.140623 CCAGCAAACCAAAATTTCCTGG 58.859 45.455 7.27 7.27 38.77 4.45
749 756 2.769095 AGTAAAGCCCAGCAAACCAAAA 59.231 40.909 0.00 0.00 0.00 2.44
753 760 1.000843 CCAAGTAAAGCCCAGCAAACC 59.999 52.381 0.00 0.00 0.00 3.27
761 768 0.244721 CAAGCTGCCAAGTAAAGCCC 59.755 55.000 0.00 0.00 37.68 5.19
795 802 1.491668 TGCCTCGGTTATTGCTAGGA 58.508 50.000 0.00 0.00 0.00 2.94
796 803 2.549754 CAATGCCTCGGTTATTGCTAGG 59.450 50.000 0.00 0.00 0.00 3.02
797 804 3.885484 CAATGCCTCGGTTATTGCTAG 57.115 47.619 0.00 0.00 0.00 3.42
800 807 3.256620 GCAATGCCTCGGTTATTGC 57.743 52.632 17.65 17.65 46.48 3.56
801 808 3.003689 CCTAAGCAATGCCTCGGTTATTG 59.996 47.826 0.00 9.32 35.47 1.90
802 809 3.214328 CCTAAGCAATGCCTCGGTTATT 58.786 45.455 0.00 0.00 0.00 1.40
803 810 2.851195 CCTAAGCAATGCCTCGGTTAT 58.149 47.619 0.00 0.00 0.00 1.89
804 811 1.745827 GCCTAAGCAATGCCTCGGTTA 60.746 52.381 0.00 0.00 39.53 2.85
805 812 1.032114 GCCTAAGCAATGCCTCGGTT 61.032 55.000 0.00 0.00 39.53 4.44
806 813 1.452108 GCCTAAGCAATGCCTCGGT 60.452 57.895 0.00 0.00 39.53 4.69
807 814 3.425422 GCCTAAGCAATGCCTCGG 58.575 61.111 0.00 0.32 39.53 4.63
817 824 1.095807 GGAATGGGACGTGCCTAAGC 61.096 60.000 27.28 13.12 40.48 3.09
818 825 0.463833 GGGAATGGGACGTGCCTAAG 60.464 60.000 27.28 0.00 36.66 2.18
819 826 1.202099 TGGGAATGGGACGTGCCTAA 61.202 55.000 27.28 8.27 36.66 2.69
820 827 0.986019 ATGGGAATGGGACGTGCCTA 60.986 55.000 27.28 13.80 36.66 3.93
821 828 2.270874 GATGGGAATGGGACGTGCCT 62.271 60.000 27.28 7.74 36.66 4.75
822 829 1.823899 GATGGGAATGGGACGTGCC 60.824 63.158 20.69 20.69 0.00 5.01
823 830 1.823899 GGATGGGAATGGGACGTGC 60.824 63.158 0.00 0.00 0.00 5.34
824 831 0.464373 CAGGATGGGAATGGGACGTG 60.464 60.000 0.00 0.00 0.00 4.49
825 832 0.620410 TCAGGATGGGAATGGGACGT 60.620 55.000 0.00 0.00 36.16 4.34
826 833 0.546122 TTCAGGATGGGAATGGGACG 59.454 55.000 0.00 0.00 36.16 4.79
827 834 1.846439 TCTTCAGGATGGGAATGGGAC 59.154 52.381 0.00 0.00 36.16 4.46
841 848 1.021390 GTGGATGGGCGTGTCTTCAG 61.021 60.000 0.00 0.00 0.00 3.02
850 857 2.203001 TATGCGTGTGGATGGGCG 60.203 61.111 0.00 0.00 0.00 6.13
852 859 0.392327 TGTGTATGCGTGTGGATGGG 60.392 55.000 0.00 0.00 0.00 4.00
855 862 0.323302 TGGTGTGTATGCGTGTGGAT 59.677 50.000 0.00 0.00 0.00 3.41
879 886 0.466922 GGTTGATGGAGCCATGGAGG 60.467 60.000 18.40 0.00 36.70 4.30
880 887 0.256752 TGGTTGATGGAGCCATGGAG 59.743 55.000 18.40 0.00 36.70 3.86
881 888 0.034186 GTGGTTGATGGAGCCATGGA 60.034 55.000 18.40 0.00 36.70 3.41
882 889 1.039233 GGTGGTTGATGGAGCCATGG 61.039 60.000 7.63 7.63 36.70 3.66
883 890 0.323633 TGGTGGTTGATGGAGCCATG 60.324 55.000 6.76 0.00 36.70 3.66
884 891 0.323725 GTGGTGGTTGATGGAGCCAT 60.324 55.000 0.71 0.71 39.69 4.40
885 892 1.074775 GTGGTGGTTGATGGAGCCA 59.925 57.895 0.00 0.00 0.00 4.75
886 893 1.678970 GGTGGTGGTTGATGGAGCC 60.679 63.158 0.00 0.00 0.00 4.70
887 894 0.678048 GAGGTGGTGGTTGATGGAGC 60.678 60.000 0.00 0.00 0.00 4.70
888 895 0.692476 TGAGGTGGTGGTTGATGGAG 59.308 55.000 0.00 0.00 0.00 3.86
889 896 0.400213 GTGAGGTGGTGGTTGATGGA 59.600 55.000 0.00 0.00 0.00 3.41
890 897 0.609131 GGTGAGGTGGTGGTTGATGG 60.609 60.000 0.00 0.00 0.00 3.51
891 898 0.955428 CGGTGAGGTGGTGGTTGATG 60.955 60.000 0.00 0.00 0.00 3.07
892 899 1.374947 CGGTGAGGTGGTGGTTGAT 59.625 57.895 0.00 0.00 0.00 2.57
893 900 2.813726 CCGGTGAGGTGGTGGTTGA 61.814 63.158 0.00 0.00 34.51 3.18
894 901 2.281484 CCGGTGAGGTGGTGGTTG 60.281 66.667 0.00 0.00 34.51 3.77
895 902 4.265056 GCCGGTGAGGTGGTGGTT 62.265 66.667 1.90 0.00 43.70 3.67
929 936 3.591527 TGGTTGATGGAGGAGTAATGGTT 59.408 43.478 0.00 0.00 0.00 3.67
949 956 3.297620 GCTGGTGCTTGGTGGTGG 61.298 66.667 0.00 0.00 36.03 4.61
958 969 2.116772 AAGTGCCATGCTGGTGCT 59.883 55.556 4.45 1.16 40.46 4.40
997 1009 2.440980 GCCCAAGCCCACCATCTC 60.441 66.667 0.00 0.00 0.00 2.75
1286 1311 1.376037 CTCTTCACGAACCTGGGCC 60.376 63.158 0.00 0.00 0.00 5.80
1366 1391 2.436646 CTCAACGCGGGCCTTGAT 60.437 61.111 12.47 0.00 0.00 2.57
1394 1419 1.682451 ATTTAGCCTCTGCCGCCGTA 61.682 55.000 0.00 0.00 38.69 4.02
1535 1585 3.071206 TCTCCTCCGTCAGCAGCC 61.071 66.667 0.00 0.00 0.00 4.85
1536 1586 2.347322 ACTCTCCTCCGTCAGCAGC 61.347 63.158 0.00 0.00 0.00 5.25
1537 1587 0.962855 TCACTCTCCTCCGTCAGCAG 60.963 60.000 0.00 0.00 0.00 4.24
1593 1643 0.109723 CGAGGGTGGTTTTTCCCAGA 59.890 55.000 3.04 0.00 45.64 3.86
1602 1652 2.933287 TCCATGGCGAGGGTGGTT 60.933 61.111 6.96 0.00 34.61 3.67
1641 1691 2.679837 CGAAGCTCGGTACTGGTAGTTA 59.320 50.000 0.85 0.00 36.00 2.24
1722 1772 5.939883 ACACTTACTAAATGCAGCTTCATCA 59.060 36.000 0.00 0.00 0.00 3.07
1770 1820 3.181475 GCTGGATCTGACGGATTAGTTGA 60.181 47.826 0.00 0.00 34.33 3.18
1863 1917 6.879458 AGAATTAACTGGTTGTGTCAGGATAC 59.121 38.462 0.00 0.00 36.62 2.24
1865 1919 5.880901 AGAATTAACTGGTTGTGTCAGGAT 58.119 37.500 0.00 0.00 36.62 3.24
1869 1923 5.883115 TCACAAGAATTAACTGGTTGTGTCA 59.117 36.000 15.80 2.54 45.32 3.58
1884 1938 5.452255 ACATATCCAAGCCATCACAAGAAT 58.548 37.500 0.00 0.00 0.00 2.40
1887 1941 6.698008 TTAACATATCCAAGCCATCACAAG 57.302 37.500 0.00 0.00 0.00 3.16
1891 1945 9.453572 GATAGAATTAACATATCCAAGCCATCA 57.546 33.333 0.00 0.00 0.00 3.07
1894 1948 8.659527 TGAGATAGAATTAACATATCCAAGCCA 58.340 33.333 0.00 0.00 0.00 4.75
1895 1949 9.160496 CTGAGATAGAATTAACATATCCAAGCC 57.840 37.037 0.00 0.00 0.00 4.35
1896 1950 9.935241 TCTGAGATAGAATTAACATATCCAAGC 57.065 33.333 0.00 0.00 30.84 4.01
1910 1964 7.609146 TGCAACTGATTTTGTCTGAGATAGAAT 59.391 33.333 0.00 0.00 37.12 2.40
1913 1967 6.732531 TGCAACTGATTTTGTCTGAGATAG 57.267 37.500 0.00 0.00 0.00 2.08
1914 1968 7.509141 TTTGCAACTGATTTTGTCTGAGATA 57.491 32.000 0.00 0.00 0.00 1.98
1915 1969 6.395426 TTTGCAACTGATTTTGTCTGAGAT 57.605 33.333 0.00 0.00 0.00 2.75
1917 1971 7.010738 ACAAATTTGCAACTGATTTTGTCTGAG 59.989 33.333 18.12 0.00 0.00 3.35
1918 1972 6.817641 ACAAATTTGCAACTGATTTTGTCTGA 59.182 30.769 18.12 0.00 0.00 3.27
1919 1973 6.902948 CACAAATTTGCAACTGATTTTGTCTG 59.097 34.615 18.12 0.00 0.00 3.51
1920 1974 6.594937 ACACAAATTTGCAACTGATTTTGTCT 59.405 30.769 18.12 6.77 0.00 3.41
1922 1976 6.740411 ACACAAATTTGCAACTGATTTTGT 57.260 29.167 18.12 8.04 0.00 2.83
1923 1977 8.389603 ACTAACACAAATTTGCAACTGATTTTG 58.610 29.630 18.12 7.43 0.00 2.44
1927 1981 6.804677 TCACTAACACAAATTTGCAACTGAT 58.195 32.000 18.12 6.34 0.00 2.90
1928 1982 6.201226 TCACTAACACAAATTTGCAACTGA 57.799 33.333 18.12 8.54 0.00 3.41
1930 1984 5.043248 GCTCACTAACACAAATTTGCAACT 58.957 37.500 18.12 3.31 0.00 3.16
1931 1985 5.043248 AGCTCACTAACACAAATTTGCAAC 58.957 37.500 18.12 0.00 0.00 4.17
1932 1986 5.261209 AGCTCACTAACACAAATTTGCAA 57.739 34.783 18.12 0.00 0.00 4.08
1933 1987 4.916983 AGCTCACTAACACAAATTTGCA 57.083 36.364 18.12 0.60 0.00 4.08
1934 1988 7.873739 ATTAAGCTCACTAACACAAATTTGC 57.126 32.000 18.12 0.00 0.00 3.68
2011 2069 7.126061 TCTTAGAATCTCCCAGTGATGTTCTA 58.874 38.462 0.00 0.00 32.25 2.10
2018 2076 3.703556 CTGCTCTTAGAATCTCCCAGTGA 59.296 47.826 0.00 0.00 0.00 3.41
2188 2250 4.530946 AGGAGTTCTCCGAGTGGAAAATTA 59.469 41.667 12.43 0.00 45.87 1.40
2217 2279 7.335422 CCTAGCTGAAACATCTTGTAGTTGAAT 59.665 37.037 0.00 0.00 0.00 2.57
2218 2280 6.650807 CCTAGCTGAAACATCTTGTAGTTGAA 59.349 38.462 0.00 0.00 0.00 2.69
2342 3767 1.355381 AGACCAGCACCAATGGAATCA 59.645 47.619 6.16 0.00 40.51 2.57
2377 3802 2.072298 GCATATCTCTTCCATCACCGC 58.928 52.381 0.00 0.00 0.00 5.68
2435 3860 7.727181 AGTATAACAGACAAGTCTTCAAGTGT 58.273 34.615 0.00 0.00 37.98 3.55
2463 3888 6.390048 TTCCTCGTCCTCAGGATATATACT 57.610 41.667 0.00 0.00 39.91 2.12
2567 3993 7.648142 TGACAAGTTCATTGAAACAACTATCC 58.352 34.615 0.00 0.00 41.83 2.59
2570 3996 8.681806 TCATTGACAAGTTCATTGAAACAACTA 58.318 29.630 0.00 0.00 40.20 2.24
2595 4021 8.506437 TCAACATCATCAACTATTGACAAGTTC 58.494 33.333 0.00 0.00 43.48 3.01
2596 4022 8.292448 GTCAACATCATCAACTATTGACAAGTT 58.708 33.333 9.43 0.00 43.38 2.66
2601 4027 7.369803 ACTGTCAACATCATCAACTATTGAC 57.630 36.000 7.75 7.75 43.48 3.18
2603 4029 8.908678 CAAAACTGTCAACATCATCAACTATTG 58.091 33.333 0.00 0.00 0.00 1.90
2605 4031 8.394971 TCAAAACTGTCAACATCATCAACTAT 57.605 30.769 0.00 0.00 0.00 2.12
2607 4033 6.698008 TCAAAACTGTCAACATCATCAACT 57.302 33.333 0.00 0.00 0.00 3.16
2608 4034 7.195646 TCTTCAAAACTGTCAACATCATCAAC 58.804 34.615 0.00 0.00 0.00 3.18
2609 4035 7.282901 TCTCTTCAAAACTGTCAACATCATCAA 59.717 33.333 0.00 0.00 0.00 2.57
2611 4037 7.194607 TCTCTTCAAAACTGTCAACATCATC 57.805 36.000 0.00 0.00 0.00 2.92
2643 4086 3.219176 AGCACCATATCATGAACCTGG 57.781 47.619 16.07 16.07 0.00 4.45
2994 4462 4.545610 CGATATCTTCAGGAAGCTCTGTC 58.454 47.826 4.15 0.22 38.28 3.51
3058 4529 3.482156 TGATGGCAGCTCTCTAATTCC 57.518 47.619 3.69 0.00 0.00 3.01
3123 4606 6.430925 ACATATTTGCAGACAACACACAGTAT 59.569 34.615 0.00 0.00 34.87 2.12
3124 4607 5.762711 ACATATTTGCAGACAACACACAGTA 59.237 36.000 0.00 0.00 34.87 2.74
3294 4834 2.025321 GCCCAACCCCTTTAGAGATGAA 60.025 50.000 0.00 0.00 0.00 2.57
3353 4896 5.279910 GGATCCCTGAACAGATAATCTCCTG 60.280 48.000 0.00 0.00 36.53 3.86
3360 4903 3.718434 AGCATGGATCCCTGAACAGATAA 59.282 43.478 20.12 0.00 0.00 1.75
3388 4931 2.514458 AGATTTTGGAGGTGCGGAAT 57.486 45.000 0.00 0.00 0.00 3.01
3416 4959 1.734465 GAACCCTCTTCATGCAGAACG 59.266 52.381 0.00 0.00 31.61 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.