AutoCloner

Multiple sequence alignment - TraesCS7B01G475700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G475700	chr7B	100.000	2459	0	0	1	2459	732142178	732144636	0.000000e+00	4505.0
1	TraesCS7B01G475700	chr7B	99.869	2294	2	1	1	2294	732149152	732151444	0.000000e+00	4218.0
2	TraesCS7B01G475700	chr7B	99.303	2294	16	0	1	2294	732191030	732193323	0.000000e+00	4148.0
3	TraesCS7B01G475700	chr7B	100.000	155	0	0	2305	2459	732137508	732137662	1.110000e-73	287.0
4	TraesCS7B01G475700	chr7B	100.000	155	0	0	2305	2459	732186378	732186532	1.110000e-73	287.0
5	TraesCS7B01G475700	chrUn	99.909	2195	1	1	100	2294	318739505	318737312	0.000000e+00	4041.0
6	TraesCS7B01G475700	chrUn	99.669	604	2	0	1	604	395795459	395796062	0.000000e+00	1105.0
7	TraesCS7B01G475700	chrUn	83.929	448	69	3	1005	1450	406625119	406625565	2.260000e-115	425.0
8	TraesCS7B01G475700	chrUn	100.000	155	0	0	2305	2459	316559020	316558866	1.110000e-73	287.0
9	TraesCS7B01G475700	chrUn	97.419	155	4	0	2305	2459	70443305	70443151	5.210000e-67	265.0
10	TraesCS7B01G475700	chr7D	93.545	914	53	6	941	1852	629337803	629336894	0.000000e+00	1356.0
11	TraesCS7B01G475700	chr7D	89.952	418	37	2	1882	2294	629331299	629330882	3.600000e-148	534.0
12	TraesCS7B01G475700	chr7D	83.948	461	72	2	1001	1461	629423594	629423136	8.070000e-120	440.0
13	TraesCS7B01G475700	chr7D	97.487	199	5	0	1	199	467527092	467527290	8.420000e-90	340.0
14	TraesCS7B01G475700	chr7D	96.517	201	7	0	1	201	593131707	593131507	1.410000e-87	333.0
15	TraesCS7B01G475700	chr7A	91.263	950	53	15	929	1867	725234360	725233430	0.000000e+00	1267.0
16	TraesCS7B01G475700	chr7A	84.538	595	54	20	972	1566	725326238	725325682	2.760000e-154	555.0
17	TraesCS7B01G475700	chr7A	87.824	386	40	4	1913	2294	725312573	725312191	1.730000e-121	446.0
18	TraesCS7B01G475700	chr7A	91.815	281	21	2	355	635	725245504	725245226	8.240000e-105	390.0
19	TraesCS7B01G475700	chr7A	90.635	299	16	6	1558	1854	725324394	725324106	1.070000e-103	387.0
20	TraesCS7B01G475700	chr7A	97.419	155	3	1	2305	2459	543792352	543792505	1.880000e-66	263.0
21	TraesCS7B01G475700	chr7A	94.545	165	9	0	2069	2233	725232440	725232276	3.140000e-64	255.0
22	TraesCS7B01G475700	chr7A	90.123	162	12	3	196	356	725250996	725250838	8.910000e-50	207.0
23	TraesCS7B01G475700	chr7A	85.567	194	15	7	1453	1643	725305944	725305761	8.980000e-45	191.0
24	TraesCS7B01G475700	chr7A	96.296	54	2	0	1808	1861	725305760	725305707	3.370000e-14	89.8
25	TraesCS7B01G475700	chr2B	84.152	448	68	3	1005	1450	47743871	47744317	4.860000e-117	431.0
26	TraesCS7B01G475700	chr2B	93.939	66	4	0	355	420	134500604	134500539	1.560000e-17	100.0
27	TraesCS7B01G475700	chr3B	84.726	419	57	4	1882	2294	741604200	741604617	1.760000e-111	412.0
28	TraesCS7B01G475700	chr3B	98.013	151	3	0	2305	2455	179214449	179214299	1.880000e-66	263.0
29	TraesCS7B01G475700	chr3D	84.010	419	61	3	1882	2294	558787340	558787758	4.930000e-107	398.0
30	TraesCS7B01G475700	chr3D	96.970	198	6	0	1	198	567893922	567894119	1.410000e-87	333.0
31	TraesCS7B01G475700	chr1D	96.098	205	7	1	1	204	396204474	396204678	1.410000e-87	333.0
32	TraesCS7B01G475700	chr1D	95.631	206	7	2	1	205	388305552	388305756	1.820000e-86	329.0
33	TraesCS7B01G475700	chr1D	98.026	152	3	0	2305	2456	480536347	480536498	5.210000e-67	265.0
34	TraesCS7B01G475700	chr1D	97.419	155	3	1	2305	2459	293755520	293755367	1.880000e-66	263.0
35	TraesCS7B01G475700	chr1D	79.439	107	20	2	346	452	416405429	416405325	9.430000e-10	75.0
36	TraesCS7B01G475700	chr5D	98.013	151	3	0	2305	2455	475796016	475796166	1.880000e-66	263.0
37	TraesCS7B01G475700	chr3A	97.419	155	3	1	2305	2459	507093440	507093593	1.880000e-66	263.0
38	TraesCS7B01G475700	chr6D	75.188	266	44	18	196	448	455743197	455743453	3.340000e-19	106.0
39	TraesCS7B01G475700	chr1B	85.915	71	10	0	347	417	562749285	562749215	2.620000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G475700	chr7B	732142178	732144636	2458	False	4505	4505	100.0000	1	2459	1	chr7B.!!$F2	2458
1	TraesCS7B01G475700	chr7B	732149152	732151444	2292	False	4218	4218	99.8690	1	2294	1	chr7B.!!$F3	2293
2	TraesCS7B01G475700	chr7B	732191030	732193323	2293	False	4148	4148	99.3030	1	2294	1	chr7B.!!$F5	2293
3	TraesCS7B01G475700	chrUn	318737312	318739505	2193	True	4041	4041	99.9090	100	2294	1	chrUn.!!$R3	2194
4	TraesCS7B01G475700	chrUn	395795459	395796062	603	False	1105	1105	99.6690	1	604	1	chrUn.!!$F1	603
5	TraesCS7B01G475700	chr7D	629336894	629337803	909	True	1356	1356	93.5450	941	1852	1	chr7D.!!$R3	911
6	TraesCS7B01G475700	chr7A	725232276	725234360	2084	True	761	1267	92.9040	929	2233	2	chr7A.!!$R4	1304
7	TraesCS7B01G475700	chr7A	725324106	725326238	2132	True	471	555	87.5865	972	1854	2	chr7A.!!$R6	882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
454	455	0.755327	GGTTGGTGTGTGAGCCCTTT	60.755	55.0	0.0	0.0	0.0	3.11	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2318	4423	1.133513	TCCTTGGCAAGAGAAAAGGCA	60.134	47.619	28.18	0.0	39.27	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
454	455	0.755327	GGTTGGTGTGTGAGCCCTTT	60.755	55.000	0.00	0.00	0.00	3.11
2329	4434	8.992835	CTTATGCTTTTATTTGCCTTTTCTCT	57.007	30.769	0.00	0.00	0.00	3.10
2330	4435	9.428097	CTTATGCTTTTATTTGCCTTTTCTCTT	57.572	29.630	0.00	0.00	0.00	2.85
2331	4436	7.662604	ATGCTTTTATTTGCCTTTTCTCTTG	57.337	32.000	0.00	0.00	0.00	3.02
2332	4437	5.466393	TGCTTTTATTTGCCTTTTCTCTTGC	59.534	36.000	0.00	0.00	0.00	4.01
2333	4438	5.106948	GCTTTTATTTGCCTTTTCTCTTGCC	60.107	40.000	0.00	0.00	0.00	4.52
2334	4439	5.543507	TTTATTTGCCTTTTCTCTTGCCA	57.456	34.783	0.00	0.00	0.00	4.92
2335	4440	5.543507	TTATTTGCCTTTTCTCTTGCCAA	57.456	34.783	0.00	0.00	0.00	4.52
2336	4441	3.457610	TTTGCCTTTTCTCTTGCCAAG	57.542	42.857	0.00	0.00	0.00	3.61
2337	4442	1.331214	TGCCTTTTCTCTTGCCAAGG	58.669	50.000	4.30	0.00	39.15	3.61
2338	4443	1.133513	TGCCTTTTCTCTTGCCAAGGA	60.134	47.619	4.30	0.00	38.52	3.36
2339	4444	1.963515	GCCTTTTCTCTTGCCAAGGAA	59.036	47.619	4.30	4.60	38.52	3.36
2340	4445	2.564504	GCCTTTTCTCTTGCCAAGGAAT	59.435	45.455	4.30	0.00	38.52	3.01
2341	4446	3.615834	GCCTTTTCTCTTGCCAAGGAATG	60.616	47.826	4.30	4.17	38.52	2.67
2342	4447	3.575687	CCTTTTCTCTTGCCAAGGAATGT	59.424	43.478	4.30	0.00	38.52	2.71
2343	4448	4.766891	CCTTTTCTCTTGCCAAGGAATGTA	59.233	41.667	4.30	0.00	38.52	2.29
2344	4449	5.420104	CCTTTTCTCTTGCCAAGGAATGTAT	59.580	40.000	4.30	0.00	38.52	2.29
2345	4450	6.405176	CCTTTTCTCTTGCCAAGGAATGTATC	60.405	42.308	4.30	0.00	38.52	2.24
2346	4451	4.842531	TCTCTTGCCAAGGAATGTATCA	57.157	40.909	4.30	0.00	0.00	2.15
2347	4452	5.178096	TCTCTTGCCAAGGAATGTATCAA	57.822	39.130	4.30	0.00	0.00	2.57
2348	4453	4.943705	TCTCTTGCCAAGGAATGTATCAAC	59.056	41.667	4.30	0.00	0.00	3.18
2349	4454	4.922206	TCTTGCCAAGGAATGTATCAACT	58.078	39.130	4.30	0.00	0.00	3.16
2350	4455	4.943705	TCTTGCCAAGGAATGTATCAACTC	59.056	41.667	4.30	0.00	0.00	3.01
2351	4456	3.620488	TGCCAAGGAATGTATCAACTCC	58.380	45.455	0.00	0.00	0.00	3.85
2352	4457	2.952310	GCCAAGGAATGTATCAACTCCC	59.048	50.000	0.00	0.00	0.00	4.30
2353	4458	3.372025	GCCAAGGAATGTATCAACTCCCT	60.372	47.826	0.00	0.00	0.00	4.20
2354	4459	4.860022	CCAAGGAATGTATCAACTCCCTT	58.140	43.478	0.00	0.00	33.25	3.95
2355	4460	5.264395	CCAAGGAATGTATCAACTCCCTTT	58.736	41.667	0.00	0.00	30.85	3.11
2356	4461	5.126061	CCAAGGAATGTATCAACTCCCTTTG	59.874	44.000	0.00	0.00	30.85	2.77
2357	4462	5.520748	AGGAATGTATCAACTCCCTTTGT	57.479	39.130	0.00	0.00	0.00	2.83
2358	4463	5.501156	AGGAATGTATCAACTCCCTTTGTC	58.499	41.667	0.00	0.00	0.00	3.18
2359	4464	5.251700	AGGAATGTATCAACTCCCTTTGTCT	59.748	40.000	0.00	0.00	0.00	3.41
2360	4465	5.946377	GGAATGTATCAACTCCCTTTGTCTT	59.054	40.000	0.00	0.00	0.00	3.01
2361	4466	6.094186	GGAATGTATCAACTCCCTTTGTCTTC	59.906	42.308	0.00	0.00	0.00	2.87
2362	4467	4.906618	TGTATCAACTCCCTTTGTCTTCC	58.093	43.478	0.00	0.00	0.00	3.46
2363	4468	4.349636	TGTATCAACTCCCTTTGTCTTCCA	59.650	41.667	0.00	0.00	0.00	3.53
2364	4469	4.664688	ATCAACTCCCTTTGTCTTCCAT	57.335	40.909	0.00	0.00	0.00	3.41
2365	4470	5.779241	ATCAACTCCCTTTGTCTTCCATA	57.221	39.130	0.00	0.00	0.00	2.74
2366	4471	4.906618	TCAACTCCCTTTGTCTTCCATAC	58.093	43.478	0.00	0.00	0.00	2.39
2367	4472	4.010349	CAACTCCCTTTGTCTTCCATACC	58.990	47.826	0.00	0.00	0.00	2.73
2368	4473	3.256704	ACTCCCTTTGTCTTCCATACCA	58.743	45.455	0.00	0.00	0.00	3.25
2369	4474	3.009143	ACTCCCTTTGTCTTCCATACCAC	59.991	47.826	0.00	0.00	0.00	4.16
2370	4475	3.256704	TCCCTTTGTCTTCCATACCACT	58.743	45.455	0.00	0.00	0.00	4.00
2371	4476	3.655777	TCCCTTTGTCTTCCATACCACTT	59.344	43.478	0.00	0.00	0.00	3.16
2372	4477	3.758554	CCCTTTGTCTTCCATACCACTTG	59.241	47.826	0.00	0.00	0.00	3.16
2373	4478	4.398319	CCTTTGTCTTCCATACCACTTGT	58.602	43.478	0.00	0.00	0.00	3.16
2374	4479	4.216257	CCTTTGTCTTCCATACCACTTGTG	59.784	45.833	0.00	0.00	0.00	3.33
2375	4480	3.417069	TGTCTTCCATACCACTTGTGG	57.583	47.619	17.34	17.34	0.00	4.17
2376	4481	2.976185	TGTCTTCCATACCACTTGTGGA	59.024	45.455	24.67	9.98	40.13	4.02
2377	4482	3.587061	TGTCTTCCATACCACTTGTGGAT	59.413	43.478	24.67	11.64	41.37	3.41
2378	4483	4.192317	GTCTTCCATACCACTTGTGGATC	58.808	47.826	24.67	0.00	41.37	3.36
2379	4484	4.080863	GTCTTCCATACCACTTGTGGATCT	60.081	45.833	24.67	6.70	41.37	2.75
2380	4485	4.536090	TCTTCCATACCACTTGTGGATCTT	59.464	41.667	24.67	6.36	41.37	2.40
2381	4486	4.220693	TCCATACCACTTGTGGATCTTG	57.779	45.455	24.67	14.84	37.12	3.02
2382	4487	3.587061	TCCATACCACTTGTGGATCTTGT	59.413	43.478	24.67	5.32	37.12	3.16
2383	4488	4.042809	TCCATACCACTTGTGGATCTTGTT	59.957	41.667	24.67	4.64	37.12	2.83
2384	4489	4.766891	CCATACCACTTGTGGATCTTGTTT	59.233	41.667	24.67	3.95	34.94	2.83
2385	4490	5.943416	CCATACCACTTGTGGATCTTGTTTA	59.057	40.000	24.67	5.97	34.94	2.01
2386	4491	6.603201	CCATACCACTTGTGGATCTTGTTTAT	59.397	38.462	24.67	7.87	34.94	1.40
2387	4492	7.122650	CCATACCACTTGTGGATCTTGTTTATT	59.877	37.037	24.67	2.12	34.94	1.40
2388	4493	6.976934	ACCACTTGTGGATCTTGTTTATTT	57.023	33.333	24.67	0.00	0.00	1.40
2389	4494	6.981722	ACCACTTGTGGATCTTGTTTATTTC	58.018	36.000	24.67	0.00	0.00	2.17
2390	4495	6.777580	ACCACTTGTGGATCTTGTTTATTTCT	59.222	34.615	24.67	0.00	0.00	2.52
2391	4496	7.287696	ACCACTTGTGGATCTTGTTTATTTCTT	59.712	33.333	24.67	0.00	0.00	2.52
2392	4497	7.596248	CCACTTGTGGATCTTGTTTATTTCTTG	59.404	37.037	14.15	0.00	0.00	3.02
2393	4498	8.352201	CACTTGTGGATCTTGTTTATTTCTTGA	58.648	33.333	0.00	0.00	0.00	3.02
2394	4499	9.082313	ACTTGTGGATCTTGTTTATTTCTTGAT	57.918	29.630	0.00	0.00	0.00	2.57
2434	4539	9.832445	TTTTAGATATAGTGAAAGTGGTGATCC	57.168	33.333	0.00	0.00	0.00	3.36
2435	4540	6.426646	AGATATAGTGAAAGTGGTGATCCC	57.573	41.667	0.00	0.00	0.00	3.85
2436	4541	5.905331	AGATATAGTGAAAGTGGTGATCCCA	59.095	40.000	0.00	0.00	42.51	4.37
2445	4550	4.819783	GTGATCCCACCTTGTGCA	57.180	55.556	0.00	0.00	37.33	4.57
2446	4551	3.271250	GTGATCCCACCTTGTGCAT	57.729	52.632	0.00	0.00	37.33	3.96
2447	4552	1.549203	GTGATCCCACCTTGTGCATT	58.451	50.000	0.00	0.00	37.33	3.56
2448	4553	1.895131	GTGATCCCACCTTGTGCATTT	59.105	47.619	0.00	0.00	37.33	2.32
2449	4554	2.299867	GTGATCCCACCTTGTGCATTTT	59.700	45.455	0.00	0.00	37.33	1.82
2450	4555	2.299582	TGATCCCACCTTGTGCATTTTG	59.700	45.455	0.00	0.00	31.34	2.44
2451	4556	1.786937	TCCCACCTTGTGCATTTTGT	58.213	45.000	0.00	0.00	31.34	2.83
2452	4557	2.950781	TCCCACCTTGTGCATTTTGTA	58.049	42.857	0.00	0.00	31.34	2.41
2453	4558	3.505386	TCCCACCTTGTGCATTTTGTAT	58.495	40.909	0.00	0.00	31.34	2.29
2454	4559	3.900601	TCCCACCTTGTGCATTTTGTATT	59.099	39.130	0.00	0.00	31.34	1.89
2455	4560	4.346418	TCCCACCTTGTGCATTTTGTATTT	59.654	37.500	0.00	0.00	31.34	1.40
2456	4561	4.690280	CCCACCTTGTGCATTTTGTATTTC	59.310	41.667	0.00	0.00	31.34	2.17
2457	4562	5.295950	CCACCTTGTGCATTTTGTATTTCA	58.704	37.500	0.00	0.00	31.34	2.69
2458	4563	5.757320	CCACCTTGTGCATTTTGTATTTCAA	59.243	36.000	0.00	0.00	31.34	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
454	455	1.270947	ACGGTTTTAGCATGGAACGGA	60.271	47.619	0.00	0.00	0.00	4.69
2304	4409	8.992835	AGAGAAAAGGCAAATAAAAGCATAAG	57.007	30.769	0.00	0.00	0.00	1.73
2305	4410	9.206870	CAAGAGAAAAGGCAAATAAAAGCATAA	57.793	29.630	0.00	0.00	0.00	1.90
2306	4411	7.331687	GCAAGAGAAAAGGCAAATAAAAGCATA	59.668	33.333	0.00	0.00	0.00	3.14
2307	4412	6.148315	GCAAGAGAAAAGGCAAATAAAAGCAT	59.852	34.615	0.00	0.00	0.00	3.79
2308	4413	5.466393	GCAAGAGAAAAGGCAAATAAAAGCA	59.534	36.000	0.00	0.00	0.00	3.91
2309	4414	5.106948	GGCAAGAGAAAAGGCAAATAAAAGC	60.107	40.000	0.00	0.00	0.00	3.51
2310	4415	5.990996	TGGCAAGAGAAAAGGCAAATAAAAG	59.009	36.000	0.00	0.00	34.72	2.27
2311	4416	5.923204	TGGCAAGAGAAAAGGCAAATAAAA	58.077	33.333	0.00	0.00	34.72	1.52
2312	4417	5.543507	TGGCAAGAGAAAAGGCAAATAAA	57.456	34.783	0.00	0.00	34.72	1.40
2313	4418	5.511202	CCTTGGCAAGAGAAAAGGCAAATAA	60.511	40.000	28.18	0.00	45.31	1.40
2314	4419	4.021192	CCTTGGCAAGAGAAAAGGCAAATA	60.021	41.667	28.18	0.00	45.31	1.40
2315	4420	3.244318	CCTTGGCAAGAGAAAAGGCAAAT	60.244	43.478	28.18	0.00	45.31	2.32
2316	4421	2.102925	CCTTGGCAAGAGAAAAGGCAAA	59.897	45.455	28.18	0.00	45.31	3.68
2317	4422	1.688197	CCTTGGCAAGAGAAAAGGCAA	59.312	47.619	28.18	0.00	44.12	4.52
2318	4423	1.133513	TCCTTGGCAAGAGAAAAGGCA	60.134	47.619	28.18	0.00	39.27	4.75
2319	4424	1.620822	TCCTTGGCAAGAGAAAAGGC	58.379	50.000	28.18	0.00	39.27	4.35
2320	4425	3.575687	ACATTCCTTGGCAAGAGAAAAGG	59.424	43.478	28.18	20.66	40.52	3.11
2321	4426	4.861102	ACATTCCTTGGCAAGAGAAAAG	57.139	40.909	28.18	22.76	0.00	2.27
2322	4427	6.009589	TGATACATTCCTTGGCAAGAGAAAA	58.990	36.000	28.18	15.80	0.00	2.29
2323	4428	5.569355	TGATACATTCCTTGGCAAGAGAAA	58.431	37.500	28.18	18.09	0.00	2.52
2324	4429	5.178096	TGATACATTCCTTGGCAAGAGAA	57.822	39.130	28.18	25.57	0.00	2.87
2325	4430	4.842531	TGATACATTCCTTGGCAAGAGA	57.157	40.909	28.18	19.41	0.00	3.10
2326	4431	4.946157	AGTTGATACATTCCTTGGCAAGAG	59.054	41.667	28.18	17.49	0.00	2.85
2327	4432	4.922206	AGTTGATACATTCCTTGGCAAGA	58.078	39.130	28.18	10.04	0.00	3.02
2328	4433	4.096984	GGAGTTGATACATTCCTTGGCAAG	59.903	45.833	20.31	20.31	0.00	4.01
2329	4434	4.016444	GGAGTTGATACATTCCTTGGCAA	58.984	43.478	0.00	0.00	0.00	4.52
2330	4435	3.620488	GGAGTTGATACATTCCTTGGCA	58.380	45.455	0.00	0.00	0.00	4.92
2331	4436	2.952310	GGGAGTTGATACATTCCTTGGC	59.048	50.000	0.00	0.00	0.00	4.52
2332	4437	4.510167	AGGGAGTTGATACATTCCTTGG	57.490	45.455	0.00	0.00	0.00	3.61
2333	4438	5.711976	ACAAAGGGAGTTGATACATTCCTTG	59.288	40.000	0.00	0.00	33.52	3.61
2334	4439	5.892348	ACAAAGGGAGTTGATACATTCCTT	58.108	37.500	0.00	0.00	34.16	3.36
2335	4440	5.251700	AGACAAAGGGAGTTGATACATTCCT	59.748	40.000	0.00	0.00	32.59	3.36
2336	4441	5.501156	AGACAAAGGGAGTTGATACATTCC	58.499	41.667	0.00	0.00	32.59	3.01
2337	4442	6.094186	GGAAGACAAAGGGAGTTGATACATTC	59.906	42.308	0.00	0.00	32.59	2.67
2338	4443	5.946377	GGAAGACAAAGGGAGTTGATACATT	59.054	40.000	0.00	0.00	32.59	2.71
2339	4444	5.014123	TGGAAGACAAAGGGAGTTGATACAT	59.986	40.000	0.00	0.00	32.59	2.29
2340	4445	4.349636	TGGAAGACAAAGGGAGTTGATACA	59.650	41.667	0.00	0.00	32.59	2.29
2341	4446	4.906618	TGGAAGACAAAGGGAGTTGATAC	58.093	43.478	0.00	0.00	32.59	2.24
2342	4447	5.779241	ATGGAAGACAAAGGGAGTTGATA	57.221	39.130	0.00	0.00	32.59	2.15
2343	4448	4.664688	ATGGAAGACAAAGGGAGTTGAT	57.335	40.909	0.00	0.00	32.59	2.57
2344	4449	4.263331	GGTATGGAAGACAAAGGGAGTTGA	60.263	45.833	0.00	0.00	32.59	3.18
2345	4450	4.010349	GGTATGGAAGACAAAGGGAGTTG	58.990	47.826	0.00	0.00	34.52	3.16
2346	4451	3.655777	TGGTATGGAAGACAAAGGGAGTT	59.344	43.478	0.00	0.00	0.00	3.01
2347	4452	3.009143	GTGGTATGGAAGACAAAGGGAGT	59.991	47.826	0.00	0.00	0.00	3.85
2348	4453	3.264450	AGTGGTATGGAAGACAAAGGGAG	59.736	47.826	0.00	0.00	0.00	4.30
2349	4454	3.256704	AGTGGTATGGAAGACAAAGGGA	58.743	45.455	0.00	0.00	0.00	4.20
2350	4455	3.721087	AGTGGTATGGAAGACAAAGGG	57.279	47.619	0.00	0.00	0.00	3.95
2351	4456	4.216257	CACAAGTGGTATGGAAGACAAAGG	59.784	45.833	0.00	0.00	0.00	3.11
2352	4457	4.216257	CCACAAGTGGTATGGAAGACAAAG	59.784	45.833	11.08	0.00	45.53	2.77
2353	4458	4.141287	CCACAAGTGGTATGGAAGACAAA	58.859	43.478	11.08	0.00	45.53	2.83
2354	4459	3.750371	CCACAAGTGGTATGGAAGACAA	58.250	45.455	11.08	0.00	45.53	3.18
2355	4460	3.417069	CCACAAGTGGTATGGAAGACA	57.583	47.619	11.08	0.00	45.53	3.41
2367	4472	8.352201	TCAAGAAATAAACAAGATCCACAAGTG	58.648	33.333	0.00	0.00	0.00	3.16
2368	4473	8.463930	TCAAGAAATAAACAAGATCCACAAGT	57.536	30.769	0.00	0.00	0.00	3.16
2408	4513	9.832445	GGATCACCACTTTCACTATATCTAAAA	57.168	33.333	0.00	0.00	35.97	1.52
2409	4514	8.429641	GGGATCACCACTTTCACTATATCTAAA	58.570	37.037	0.00	0.00	39.85	1.85
2410	4515	7.567250	TGGGATCACCACTTTCACTATATCTAA	59.433	37.037	0.00	0.00	46.80	2.10
2411	4516	7.073208	TGGGATCACCACTTTCACTATATCTA	58.927	38.462	0.00	0.00	46.80	1.98
2412	4517	5.905331	TGGGATCACCACTTTCACTATATCT	59.095	40.000	0.00	0.00	46.80	1.98
2413	4518	6.174720	TGGGATCACCACTTTCACTATATC	57.825	41.667	0.00	0.00	46.80	1.63
2428	4533	1.549203	AATGCACAAGGTGGGATCAC	58.451	50.000	0.00	0.00	42.91	3.06
2429	4534	2.299582	CAAAATGCACAAGGTGGGATCA	59.700	45.455	0.00	0.00	33.64	2.92
2430	4535	2.299867	ACAAAATGCACAAGGTGGGATC	59.700	45.455	0.00	0.00	33.64	3.36
2431	4536	2.328319	ACAAAATGCACAAGGTGGGAT	58.672	42.857	0.00	0.00	33.64	3.85
2432	4537	1.786937	ACAAAATGCACAAGGTGGGA	58.213	45.000	0.00	0.00	33.64	4.37
2433	4538	3.959535	ATACAAAATGCACAAGGTGGG	57.040	42.857	0.00	0.00	33.64	4.61
2434	4539	5.295950	TGAAATACAAAATGCACAAGGTGG	58.704	37.500	0.00	0.00	33.64	4.61
2435	4540	6.841443	TTGAAATACAAAATGCACAAGGTG	57.159	33.333	0.00	0.00	35.39	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.