Multiple sequence alignment - TraesCS7B01G475100

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G475100 chr7B 100.000 3399 0 0 3724 7122 731044181 731040783 0.000000e+00 6277.0
1 TraesCS7B01G475100 chr7B 100.000 1986 0 0 1502 3487 731046403 731044418 0.000000e+00 3668.0
2 TraesCS7B01G475100 chr7B 100.000 1178 0 0 1 1178 731047904 731046727 0.000000e+00 2176.0
3 TraesCS7B01G475100 chr7B 85.888 411 52 6 5113 5517 731035164 731034754 3.950000e-117 433.0
4 TraesCS7B01G475100 chr7B 89.744 156 16 0 2211 2366 731036016 731035861 4.360000e-47 200.0
5 TraesCS7B01G475100 chr7B 89.062 128 14 0 2232 2359 730809581 730809708 7.390000e-35 159.0
6 TraesCS7B01G475100 chr7B 86.331 139 16 1 1735 1870 731036459 731036321 1.600000e-31 148.0
7 TraesCS7B01G475100 chr7B 81.287 171 20 7 198 365 731047533 731047372 2.090000e-25 128.0
8 TraesCS7B01G475100 chr7B 81.287 171 20 7 372 533 731047707 731047540 2.090000e-25 128.0
9 TraesCS7B01G475100 chr7B 82.014 139 17 5 1723 1860 730809116 730809247 2.100000e-20 111.0
10 TraesCS7B01G475100 chr7B 78.102 137 28 2 5988 6123 730811121 730811256 1.270000e-12 86.1
11 TraesCS7B01G475100 chr7B 83.333 96 9 5 180 271 720553803 720553711 1.650000e-11 82.4
12 TraesCS7B01G475100 chr7D 95.990 1646 62 2 1502 3143 629108063 629109708 0.000000e+00 2671.0
13 TraesCS7B01G475100 chr7D 95.383 1083 39 3 4721 5793 629109704 629110785 0.000000e+00 1712.0
14 TraesCS7B01G475100 chr7D 88.722 1064 98 9 113 1171 629107017 629108063 0.000000e+00 1280.0
15 TraesCS7B01G475100 chr7D 95.189 769 36 1 5952 6719 629110782 629111550 0.000000e+00 1214.0
16 TraesCS7B01G475100 chr7D 88.363 739 30 19 4013 4722 12344798 12344087 0.000000e+00 837.0
17 TraesCS7B01G475100 chr7D 92.346 405 27 3 6721 7122 629111959 629112362 2.230000e-159 573.0
18 TraesCS7B01G475100 chr7D 86.288 423 51 6 5113 5528 629118090 629118512 3.030000e-123 453.0
19 TraesCS7B01G475100 chr7D 96.889 225 7 0 3143 3367 141331907 141331683 1.880000e-100 377.0
20 TraesCS7B01G475100 chr7D 96.491 228 8 0 3140 3367 620185406 620185179 1.880000e-100 377.0
21 TraesCS7B01G475100 chr7D 81.111 270 40 10 6216 6477 629120071 629120337 9.360000e-49 206.0
22 TraesCS7B01G475100 chr7D 96.694 121 2 2 3368 3487 49445309 49445428 4.360000e-47 200.0
23 TraesCS7B01G475100 chr7D 95.833 120 5 0 3368 3487 620184992 620185111 2.030000e-45 195.0
24 TraesCS7B01G475100 chr7D 89.865 148 15 0 2219 2366 628224015 628223868 2.620000e-44 191.0
25 TraesCS7B01G475100 chr7D 77.311 357 50 15 2679 3010 628223646 628223296 1.580000e-41 182.0
26 TraesCS7B01G475100 chr7D 87.821 156 14 2 2211 2366 629117239 629117389 2.040000e-40 178.0
27 TraesCS7B01G475100 chr7D 79.856 139 26 2 5986 6123 628222316 628222179 4.550000e-17 100.0
28 TraesCS7B01G475100 chr7D 78.846 104 21 1 1762 1865 628220145 628220043 1.280000e-07 69.4
29 TraesCS7B01G475100 chr7A 90.695 1655 114 9 1502 3143 725153723 725152096 0.000000e+00 2167.0
30 TraesCS7B01G475100 chr7A 87.201 1086 99 23 4721 5791 725152100 725151040 0.000000e+00 1199.0
31 TraesCS7B01G475100 chr7A 92.181 729 41 7 5952 6679 725151041 725150328 0.000000e+00 1016.0
32 TraesCS7B01G475100 chr7A 91.842 711 47 8 408 1117 725154493 725153793 0.000000e+00 981.0
33 TraesCS7B01G475100 chr7A 91.315 403 32 3 6721 7122 725149727 725149327 1.350000e-151 547.0
34 TraesCS7B01G475100 chr7A 85.075 402 44 12 5113 5507 725136170 725135778 5.180000e-106 396.0
35 TraesCS7B01G475100 chr7A 90.972 144 13 0 2223 2366 724947183 724947326 2.030000e-45 195.0
36 TraesCS7B01G475100 chr7A 74.576 531 90 25 2653 3149 725136802 725136283 2.620000e-44 191.0
37 TraesCS7B01G475100 chr7A 92.126 127 10 0 2232 2358 724951361 724951487 5.680000e-41 180.0
38 TraesCS7B01G475100 chr7A 87.500 136 17 0 1735 1870 725137426 725137291 2.660000e-34 158.0
39 TraesCS7B01G475100 chr7A 84.615 156 24 0 2211 2366 725137010 725136855 9.570000e-34 156.0
40 TraesCS7B01G475100 chr7A 81.081 185 25 5 178 360 418132341 418132165 9.630000e-29 139.0
41 TraesCS7B01G475100 chr7A 93.103 87 4 1 5105 5191 94321253 94321337 7.500000e-25 126.0
42 TraesCS7B01G475100 chr7A 93.333 75 5 0 650 724 725158198 725158124 2.100000e-20 111.0
43 TraesCS7B01G475100 chr7A 78.400 125 25 2 5988 6111 724949000 724949123 5.920000e-11 80.5
44 TraesCS7B01G475100 chr3D 94.622 1004 35 7 3724 4721 611604320 611603330 0.000000e+00 1537.0
45 TraesCS7B01G475100 chr3D 96.444 225 8 0 3143 3367 30440251 30440027 8.730000e-99 372.0
46 TraesCS7B01G475100 chr3D 96.444 225 8 0 3143 3367 522396740 522396516 8.730000e-99 372.0
47 TraesCS7B01G475100 chr3D 94.675 169 8 1 5790 5957 214436718 214436886 1.970000e-65 261.0
48 TraesCS7B01G475100 chr3D 97.521 121 2 1 3368 3487 603083708 603083828 9.360000e-49 206.0
49 TraesCS7B01G475100 chr3D 95.833 120 5 0 3368 3487 24890923 24891042 2.030000e-45 195.0
50 TraesCS7B01G475100 chr3D 96.610 118 2 2 3369 3486 596642035 596642150 2.030000e-45 195.0
51 TraesCS7B01G475100 chr3D 95.161 124 2 1 3368 3487 605982642 605982765 7.290000e-45 193.0
52 TraesCS7B01G475100 chr6D 94.252 1009 39 10 3724 4721 21997523 21996523 0.000000e+00 1524.0
53 TraesCS7B01G475100 chr6D 96.212 792 24 4 3724 4510 54904446 54903656 0.000000e+00 1291.0
54 TraesCS7B01G475100 chr6D 96.018 226 9 0 3142 3367 47816450 47816675 1.130000e-97 368.0
55 TraesCS7B01G475100 chr6D 96.000 225 9 0 3143 3367 27069433 27069209 4.060000e-97 366.0
56 TraesCS7B01G475100 chr6D 96.000 225 9 0 3143 3367 121804321 121804545 4.060000e-97 366.0
57 TraesCS7B01G475100 chr6D 96.804 219 7 0 3143 3361 432661901 432662119 4.060000e-97 366.0
58 TraesCS7B01G475100 chr6D 95.982 224 9 0 3144 3367 32234910 32235133 1.460000e-96 364.0
59 TraesCS7B01G475100 chr6D 95.964 223 9 0 3145 3367 111615683 111615905 5.250000e-96 363.0
60 TraesCS7B01G475100 chr6D 95.964 223 9 0 3142 3364 430520289 430520511 5.250000e-96 363.0
61 TraesCS7B01G475100 chr6D 95.556 225 10 0 3140 3364 22276947 22277171 1.890000e-95 361.0
62 TraesCS7B01G475100 chr6D 94.675 169 8 1 5786 5953 8674658 8674490 1.970000e-65 261.0
63 TraesCS7B01G475100 chr6D 94.083 169 10 0 5788 5956 141130959 141130791 2.550000e-64 257.0
64 TraesCS7B01G475100 chr6D 95.935 123 2 2 3368 3487 54904419 54904541 5.640000e-46 196.0
65 TraesCS7B01G475100 chr6D 95.000 120 6 0 3368 3487 19563872 19563991 9.430000e-44 189.0
66 TraesCS7B01G475100 chr6D 95.041 121 5 1 3368 3487 35158028 35158148 9.430000e-44 189.0
67 TraesCS7B01G475100 chr6D 95.041 121 4 2 3368 3487 58232665 58232546 9.430000e-44 189.0
68 TraesCS7B01G475100 chr6D 94.400 125 2 2 3368 3487 112447459 112447583 3.390000e-43 187.0
69 TraesCS7B01G475100 chr6D 94.309 123 4 1 3368 3487 447980478 447980600 1.220000e-42 185.0
70 TraesCS7B01G475100 chr6D 94.915 118 5 1 3368 3485 27401337 27401221 4.390000e-42 183.0
71 TraesCS7B01G475100 chr6D 94.215 121 6 1 3368 3487 111621439 111621319 4.390000e-42 183.0
72 TraesCS7B01G475100 chr5D 93.851 927 37 8 3724 4641 5228670 5229585 0.000000e+00 1378.0
73 TraesCS7B01G475100 chr5D 96.889 225 7 0 3143 3367 547936532 547936756 1.880000e-100 377.0
74 TraesCS7B01G475100 chr5D 96.889 225 7 0 3143 3367 561148702 561148478 1.880000e-100 377.0
75 TraesCS7B01G475100 chr5D 96.000 225 9 0 3143 3367 507169406 507169182 4.060000e-97 366.0
76 TraesCS7B01G475100 chr5D 97.778 45 0 1 12 55 500854981 500855025 7.660000e-10 76.8
77 TraesCS7B01G475100 chr5A 91.343 1005 56 15 3724 4718 503252424 503253407 0.000000e+00 1345.0
78 TraesCS7B01G475100 chr1B 92.122 952 44 9 3724 4662 563053731 563054664 0.000000e+00 1314.0
79 TraesCS7B01G475100 chr1B 91.176 374 22 3 4350 4721 16341780 16341416 1.380000e-136 497.0
80 TraesCS7B01G475100 chr1B 96.429 168 6 0 5789 5956 520523916 520523749 1.960000e-70 278.0
81 TraesCS7B01G475100 chr1B 79.894 189 27 6 177 364 168416978 168416800 2.090000e-25 128.0
82 TraesCS7B01G475100 chr1B 84.328 134 17 4 26 157 357227512 357227381 2.090000e-25 128.0
83 TraesCS7B01G475100 chr1B 80.460 87 16 1 184 270 666563293 666563378 1.660000e-06 65.8
84 TraesCS7B01G475100 chr5B 95.297 808 30 7 3724 4524 465023720 465024526 0.000000e+00 1275.0
85 TraesCS7B01G475100 chr5B 95.906 171 7 0 5787 5957 615198124 615198294 1.960000e-70 278.0
86 TraesCS7B01G475100 chr1D 95.517 803 27 6 3724 4522 80840716 80841513 0.000000e+00 1275.0
87 TraesCS7B01G475100 chr1D 96.889 225 7 0 3143 3367 167942878 167943102 1.880000e-100 377.0
88 TraesCS7B01G475100 chr1D 96.476 227 8 0 3141 3367 478505596 478505822 6.750000e-100 375.0
89 TraesCS7B01G475100 chr1D 96.053 228 9 0 3140 3367 2351433 2351660 8.730000e-99 372.0
90 TraesCS7B01G475100 chr1D 95.690 232 9 1 3137 3367 12559368 12559599 8.730000e-99 372.0
91 TraesCS7B01G475100 chr1D 94.643 168 9 0 5790 5957 310246929 310247096 1.970000e-65 261.0
92 TraesCS7B01G475100 chr1D 97.521 121 2 1 3368 3487 427646045 427646165 9.360000e-49 206.0
93 TraesCS7B01G475100 chr1D 96.748 123 1 1 3368 3487 463051365 463051487 1.210000e-47 202.0
94 TraesCS7B01G475100 chr1D 95.833 120 3 1 3368 3487 416979800 416979917 7.290000e-45 193.0
95 TraesCS7B01G475100 chr1D 95.798 119 3 1 3368 3486 244395348 244395232 2.620000e-44 191.0
96 TraesCS7B01G475100 chr1D 85.714 133 15 3 26 157 255822581 255822710 3.460000e-28 137.0
97 TraesCS7B01G475100 chr2B 94.789 806 31 10 3724 4521 769822928 769823730 0.000000e+00 1245.0
98 TraesCS7B01G475100 chr2B 89.294 411 34 3 4315 4721 741532176 741531772 2.290000e-139 507.0
99 TraesCS7B01G475100 chr2B 96.471 170 5 1 5790 5958 436536628 436536797 5.440000e-71 279.0
100 TraesCS7B01G475100 chr2B 82.946 129 14 6 34 159 530309445 530309322 7.550000e-20 110.0
101 TraesCS7B01G475100 chr2B 79.861 144 21 4 220 362 39373194 39373058 1.640000e-16 99.0
102 TraesCS7B01G475100 chr6B 92.026 627 28 6 4104 4724 690175225 690174615 0.000000e+00 861.0
103 TraesCS7B01G475100 chr6B 94.828 174 8 1 5787 5960 48412242 48412070 3.270000e-68 270.0
104 TraesCS7B01G475100 chr6B 82.278 79 12 2 4991 5069 476424774 476424698 4.610000e-07 67.6
105 TraesCS7B01G475100 chr4D 96.889 225 7 0 3143 3367 497548015 497548239 1.880000e-100 377.0
106 TraesCS7B01G475100 chr4D 96.000 225 9 0 3143 3367 410163852 410164076 4.060000e-97 366.0
107 TraesCS7B01G475100 chr4D 96.000 225 9 0 3143 3367 489343263 489343039 4.060000e-97 366.0
108 TraesCS7B01G475100 chr4D 94.643 168 9 0 5788 5955 22027384 22027551 1.970000e-65 261.0
109 TraesCS7B01G475100 chr4D 95.000 120 6 0 3368 3487 461378697 461378578 9.430000e-44 189.0
110 TraesCS7B01G475100 chr4D 94.400 125 2 3 3368 3487 38759973 38759849 3.390000e-43 187.0
111 TraesCS7B01G475100 chr4D 85.333 150 22 0 12 161 102002623 102002474 9.570000e-34 156.0
112 TraesCS7B01G475100 chrUn 96.444 225 8 0 3143 3367 328116467 328116691 8.730000e-99 372.0
113 TraesCS7B01G475100 chrUn 95.595 227 10 0 3141 3367 81291705 81291479 1.460000e-96 364.0
114 TraesCS7B01G475100 chrUn 96.364 220 8 0 3143 3362 92981100 92980881 5.250000e-96 363.0
115 TraesCS7B01G475100 chrUn 95.556 225 10 0 3143 3367 21658257 21658033 1.890000e-95 361.0
116 TraesCS7B01G475100 chrUn 95.556 225 10 0 3143 3367 297154330 297154106 1.890000e-95 361.0
117 TraesCS7B01G475100 chrUn 95.111 225 11 0 3143 3367 89965689 89965465 8.790000e-94 355.0
118 TraesCS7B01G475100 chrUn 95.495 222 10 0 3143 3364 98916576 98916355 8.790000e-94 355.0
119 TraesCS7B01G475100 chrUn 95.495 222 10 0 3142 3363 102546508 102546287 8.790000e-94 355.0
120 TraesCS7B01G475100 chrUn 95.111 225 11 0 3143 3367 104942913 104942689 8.790000e-94 355.0
121 TraesCS7B01G475100 chrUn 94.667 225 12 0 3143 3367 104919797 104919573 4.090000e-92 350.0
122 TraesCS7B01G475100 chrUn 95.181 166 8 0 5789 5954 95257972 95258137 5.480000e-66 263.0
123 TraesCS7B01G475100 chrUn 95.679 162 7 0 5793 5954 34497265 34497104 1.970000e-65 261.0
124 TraesCS7B01G475100 chrUn 94.186 172 9 1 5790 5960 36763831 36763660 1.970000e-65 261.0
125 TraesCS7B01G475100 chrUn 94.186 172 9 1 5790 5960 36801030 36800859 1.970000e-65 261.0
126 TraesCS7B01G475100 chrUn 95.122 164 8 0 5790 5953 34166833 34166996 7.090000e-65 259.0
127 TraesCS7B01G475100 chrUn 95.122 164 8 0 5790 5953 83351235 83351072 7.090000e-65 259.0
128 TraesCS7B01G475100 chrUn 94.578 166 9 0 5790 5955 337135537 337135372 2.550000e-64 257.0
129 TraesCS7B01G475100 chrUn 93.103 174 12 0 5787 5960 81565651 81565824 9.170000e-64 255.0
130 TraesCS7B01G475100 chrUn 93.605 172 9 2 5790 5961 320685965 320685796 9.170000e-64 255.0
131 TraesCS7B01G475100 chrUn 96.639 119 2 2 3369 3486 162707116 162706999 5.640000e-46 196.0
132 TraesCS7B01G475100 chrUn 96.639 119 2 2 3369 3486 162709189 162709072 5.640000e-46 196.0
133 TraesCS7B01G475100 chrUn 94.915 118 3 2 3369 3486 162705042 162704928 1.580000e-41 182.0
134 TraesCS7B01G475100 chrUn 93.548 124 3 3 3368 3487 114583808 114583930 5.680000e-41 180.0
135 TraesCS7B01G475100 chrUn 93.443 122 4 3 3368 3487 461034284 461034403 2.040000e-40 178.0
136 TraesCS7B01G475100 chrUn 93.333 120 6 1 3370 3487 43789437 43789556 7.340000e-40 176.0
137 TraesCS7B01G475100 chrUn 93.388 121 4 3 3368 3487 364303550 364303667 7.340000e-40 176.0
138 TraesCS7B01G475100 chrUn 92.800 125 1 3 3368 3487 63552364 63552485 2.640000e-39 174.0
139 TraesCS7B01G475100 chrUn 93.277 119 6 2 3368 3486 92501648 92501532 2.640000e-39 174.0
140 TraesCS7B01G475100 chrUn 92.800 125 1 3 3368 3487 242623735 242623614 2.640000e-39 174.0
141 TraesCS7B01G475100 chrUn 92.800 125 1 3 3368 3487 305791979 305791858 2.640000e-39 174.0
142 TraesCS7B01G475100 chr4A 85.185 297 42 2 6721 7016 47305035 47305330 3.230000e-78 303.0
143 TraesCS7B01G475100 chr4A 98.780 164 2 0 5790 5953 90592011 90591848 6.990000e-75 292.0
144 TraesCS7B01G475100 chr3A 98.171 164 3 0 5790 5953 151013132 151012969 3.250000e-73 287.0
145 TraesCS7B01G475100 chr3A 96.491 171 6 0 5788 5958 589599927 589599757 4.210000e-72 283.0
146 TraesCS7B01G475100 chr3A 95.906 171 7 0 5787 5957 640759973 640760143 1.960000e-70 278.0
147 TraesCS7B01G475100 chr6A 95.455 176 8 0 5778 5953 1829841 1830016 1.510000e-71 281.0
148 TraesCS7B01G475100 chr6A 92.632 190 12 2 5787 5974 596588453 596588264 9.100000e-69 272.0
149 TraesCS7B01G475100 chr6A 81.452 124 23 0 400 523 16532859 16532736 1.260000e-17 102.0
150 TraesCS7B01G475100 chr3B 96.450 169 6 0 5787 5955 117922563 117922395 5.440000e-71 279.0
151 TraesCS7B01G475100 chr3B 94.475 181 8 2 5790 5970 821840123 821839945 1.960000e-70 278.0
152 TraesCS7B01G475100 chr3B 93.989 183 10 1 5781 5962 306557568 306557386 7.040000e-70 276.0
153 TraesCS7B01G475100 chr1A 96.970 165 5 0 5789 5953 564262603 564262439 1.960000e-70 278.0
154 TraesCS7B01G475100 chr1A 96.407 167 6 0 5788 5954 2397083 2396917 7.040000e-70 276.0
155 TraesCS7B01G475100 chr1A 96.364 165 6 0 5790 5954 219372791 219372627 9.100000e-69 272.0
156 TraesCS7B01G475100 chr1A 96.364 165 6 0 5790 5954 322177358 322177194 9.100000e-69 272.0
157 TraesCS7B01G475100 chr1A 95.322 171 8 0 5783 5953 500834539 500834369 9.100000e-69 272.0
158 TraesCS7B01G475100 chr1A 96.364 165 6 0 5789 5953 575456745 575456909 9.100000e-69 272.0
159 TraesCS7B01G475100 chr1A 95.808 167 7 0 5789 5955 33222191 33222025 3.270000e-68 270.0
160 TraesCS7B01G475100 chr1A 91.457 199 13 4 5790 5987 494815578 494815383 3.270000e-68 270.0
161 TraesCS7B01G475100 chr1A 86.466 133 13 4 26 157 328242150 328242278 2.680000e-29 141.0
162 TraesCS7B01G475100 chr1A 85.714 119 9 3 243 360 115970289 115970178 1.260000e-22 119.0
163 TraesCS7B01G475100 chr1A 76.316 114 23 3 159 270 574677418 574677529 2.770000e-04 58.4
164 TraesCS7B01G475100 chr4B 96.386 166 6 0 5788 5953 143897983 143898148 2.530000e-69 274.0
165 TraesCS7B01G475100 chr4B 95.858 169 6 1 5786 5953 617283077 617283245 9.100000e-69 272.0
166 TraesCS7B01G475100 chr4B 88.095 126 15 0 36 161 146301850 146301725 4.450000e-32 150.0
167 TraesCS7B01G475100 chr4B 86.667 75 9 1 12 86 146301967 146301894 1.650000e-11 82.4
168 TraesCS7B01G475100 chr4B 88.235 51 6 0 36 86 146301897 146301847 2.150000e-05 62.1
169 TraesCS7B01G475100 chr2A 82.877 146 22 3 214 357 753085748 753085892 2.090000e-25 128.0
170 TraesCS7B01G475100 chr2D 78.986 138 23 4 27 163 361393473 361393341 9.840000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G475100 chr7B 731040783 731047904 7121 True 2475.400000 6277 92.514800 1 7122 5 chr7B.!!$R3 7121
1 TraesCS7B01G475100 chr7B 731034754 731036459 1705 True 260.333333 433 87.321000 1735 5517 3 chr7B.!!$R2 3782
2 TraesCS7B01G475100 chr7D 629107017 629112362 5345 False 1490.000000 2671 93.526000 113 7122 5 chr7D.!!$F3 7009
3 TraesCS7B01G475100 chr7D 12344087 12344798 711 True 837.000000 837 88.363000 4013 4722 1 chr7D.!!$R1 709
4 TraesCS7B01G475100 chr7D 629117239 629120337 3098 False 279.000000 453 85.073333 2211 6477 3 chr7D.!!$F4 4266
5 TraesCS7B01G475100 chr7A 725149327 725158198 8871 True 1003.500000 2167 91.094500 408 7122 6 chr7A.!!$R3 6714
6 TraesCS7B01G475100 chr7A 725135778 725137426 1648 True 225.250000 396 82.941500 1735 5507 4 chr7A.!!$R2 3772
7 TraesCS7B01G475100 chr3D 611603330 611604320 990 True 1537.000000 1537 94.622000 3724 4721 1 chr3D.!!$R3 997
8 TraesCS7B01G475100 chr6D 21996523 21997523 1000 True 1524.000000 1524 94.252000 3724 4721 1 chr6D.!!$R2 997
9 TraesCS7B01G475100 chr6D 54903656 54904446 790 True 1291.000000 1291 96.212000 3724 4510 1 chr6D.!!$R5 786
10 TraesCS7B01G475100 chr5D 5228670 5229585 915 False 1378.000000 1378 93.851000 3724 4641 1 chr5D.!!$F1 917
11 TraesCS7B01G475100 chr5A 503252424 503253407 983 False 1345.000000 1345 91.343000 3724 4718 1 chr5A.!!$F1 994
12 TraesCS7B01G475100 chr1B 563053731 563054664 933 False 1314.000000 1314 92.122000 3724 4662 1 chr1B.!!$F1 938
13 TraesCS7B01G475100 chr5B 465023720 465024526 806 False 1275.000000 1275 95.297000 3724 4524 1 chr5B.!!$F1 800
14 TraesCS7B01G475100 chr1D 80840716 80841513 797 False 1275.000000 1275 95.517000 3724 4522 1 chr1D.!!$F3 798
15 TraesCS7B01G475100 chr2B 769822928 769823730 802 False 1245.000000 1245 94.789000 3724 4521 1 chr2B.!!$F2 797
16 TraesCS7B01G475100 chr6B 690174615 690175225 610 True 861.000000 861 92.026000 4104 4724 1 chr6B.!!$R3 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 3795 0.178992 GGATGGCCCCGATCATTTGA 60.179 55.000 0.00 0.00 0.00 2.69 F
988 4291 0.390340 ATACAGCCGGCATCGCATAG 60.390 55.000 31.54 9.74 34.56 2.23 F
1552 4879 0.692476 AGCTTCAGTATGGTGGCACA 59.308 50.000 20.82 6.09 36.16 4.57 F
3329 6750 0.107831 GGGTGCGATGCCCATTAGTA 59.892 55.000 4.76 0.00 45.40 1.82 F
3356 6777 0.034337 GTGGCACCAACCGAGACTAA 59.966 55.000 6.29 0.00 0.00 2.24 F
4551 8027 0.251430 CCGGTTGGGGTTGGTGTTAT 60.251 55.000 0.00 0.00 0.00 1.89 F
4898 8377 0.771127 ATTATGCATACGGCCAGGGT 59.229 50.000 5.74 0.00 43.89 4.34 F
5770 9299 1.135859 GTGTGAGCAGCTTGAATTCGG 60.136 52.381 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 4879 0.530650 CGCTACTCGACCATGGCATT 60.531 55.000 13.04 0.0 41.67 3.56 R
1853 5193 1.689813 TGGTAACTGAAGACGCAAGGA 59.310 47.619 0.00 0.0 39.25 3.36 R
3337 6758 0.034337 TTAGTCTCGGTTGGTGCCAC 59.966 55.000 0.00 0.0 0.00 5.01 R
4680 8156 0.033781 TTGTCCCGGTTGGTAAGACG 59.966 55.000 0.00 0.0 34.77 4.18 R
5179 8659 0.107993 ACAGACGCACCTGGATCATG 60.108 55.000 0.00 0.0 38.44 3.07 R
5567 9076 1.134371 GGGGGAGAGCTGTTATGTGAC 60.134 57.143 0.00 0.0 0.00 3.67 R
6013 9542 1.492720 GCGCTCTTACCTATCAGCAC 58.507 55.000 0.00 0.0 0.00 4.40 R
6971 12154 1.617947 GCATCTTCCCCGACTCTGGT 61.618 60.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.993307 GCCCCTGATCTTGCATGA 57.007 55.556 4.57 4.57 0.00 3.07
18 19 3.196040 GCCCCTGATCTTGCATGAA 57.804 52.632 6.36 0.00 0.00 2.57
19 20 1.477553 GCCCCTGATCTTGCATGAAA 58.522 50.000 6.36 0.00 0.00 2.69
20 21 1.826720 GCCCCTGATCTTGCATGAAAA 59.173 47.619 6.36 0.00 0.00 2.29
21 22 2.234414 GCCCCTGATCTTGCATGAAAAA 59.766 45.455 6.36 0.00 0.00 1.94
138 139 2.570415 TGTAACCAATCCCGCAGAAA 57.430 45.000 0.00 0.00 0.00 2.52
140 141 1.129811 GTAACCAATCCCGCAGAAACG 59.870 52.381 0.00 0.00 0.00 3.60
162 163 6.684686 ACGCGCTAGGTATCATCTATTTAAA 58.315 36.000 5.73 0.00 0.00 1.52
211 212 5.219633 AGTGCAATAAATGTCGTTTCCAAC 58.780 37.500 0.00 0.00 0.00 3.77
212 213 4.979197 GTGCAATAAATGTCGTTTCCAACA 59.021 37.500 0.00 0.00 0.00 3.33
233 234 8.957028 CCAACATACGATTAATGCAATTTACAG 58.043 33.333 0.00 0.00 37.87 2.74
283 284 7.136703 TGGATACATCATTGGGACAATGTGAG 61.137 42.308 18.27 12.76 45.14 3.51
290 291 1.156736 GGGACAATGTGAGACGTTGG 58.843 55.000 12.15 0.00 46.49 3.77
302 303 6.978338 TGTGAGACGTTGGATATAGGTATTC 58.022 40.000 0.00 0.00 0.00 1.75
306 307 6.240894 AGACGTTGGATATAGGTATTCGGTA 58.759 40.000 0.00 0.00 0.00 4.02
319 320 1.271856 TTCGGTAGTTGGATGGCTCA 58.728 50.000 0.00 0.00 0.00 4.26
341 343 7.563888 TCAGATCATTGGATTCATCAAACTC 57.436 36.000 0.00 0.00 32.67 3.01
342 344 6.544931 TCAGATCATTGGATTCATCAAACTCC 59.455 38.462 0.00 0.00 32.67 3.85
389 391 8.987890 AGTTGATTAATGTTGTTGCCAAATTAC 58.012 29.630 0.00 0.00 30.94 1.89
414 416 9.847706 ACGATTAATGCAATTTACATGTTTACA 57.152 25.926 2.30 0.00 37.87 2.41
484 3783 2.290960 GGATATAGGTGGTTGGATGGCC 60.291 54.545 0.00 0.00 0.00 5.36
486 3785 1.655114 ATAGGTGGTTGGATGGCCCC 61.655 60.000 0.00 0.00 0.00 5.80
488 3787 4.041762 GTGGTTGGATGGCCCCGA 62.042 66.667 0.00 0.00 0.00 5.14
496 3795 0.178992 GGATGGCCCCGATCATTTGA 60.179 55.000 0.00 0.00 0.00 2.69
498 3797 1.338020 GATGGCCCCGATCATTTGAAC 59.662 52.381 0.00 0.00 0.00 3.18
519 3818 7.184106 TGAACTCATCAAACTCGTGTTTTTAC 58.816 34.615 12.62 1.47 43.13 2.01
564 3866 7.617041 AAACTCAAGATTACTCTAACATGGC 57.383 36.000 0.00 0.00 0.00 4.40
565 3867 6.299805 ACTCAAGATTACTCTAACATGGCA 57.700 37.500 0.00 0.00 0.00 4.92
572 3874 5.584253 TTACTCTAACATGGCACTCTCTC 57.416 43.478 0.00 0.00 0.00 3.20
588 3891 5.986135 CACTCTCTCTTTCGAGGAAAAAGAA 59.014 40.000 0.00 0.00 41.02 2.52
592 3895 5.308825 TCTCTTTCGAGGAAAAAGAAGCAT 58.691 37.500 0.00 0.00 41.02 3.79
593 3896 5.409826 TCTCTTTCGAGGAAAAAGAAGCATC 59.590 40.000 0.00 0.00 41.02 3.91
598 3901 4.821805 TCGAGGAAAAAGAAGCATCAAAGT 59.178 37.500 0.00 0.00 0.00 2.66
605 3908 4.843220 AAGAAGCATCAAAGTGACAAGG 57.157 40.909 0.00 0.00 0.00 3.61
625 3928 1.815421 GTGAGGCCCATGCACGTAG 60.815 63.158 0.00 0.00 40.13 3.51
639 3942 1.225704 CGTAGGACGTAGGGGGAGT 59.774 63.158 0.00 0.00 36.74 3.85
658 3961 1.726791 GTGCACGTCGATCAATCAGTT 59.273 47.619 0.00 0.00 0.00 3.16
703 4006 4.132336 TGCATCTGCTAGCTTCCATTAAG 58.868 43.478 17.23 1.97 42.66 1.85
711 4014 4.578105 GCTAGCTTCCATTAAGAATGCACT 59.422 41.667 7.70 0.00 37.38 4.40
809 4112 3.368323 GGAGAAGTCAAGCTCTTCCTCTG 60.368 52.174 9.42 0.00 41.27 3.35
813 4116 0.612229 TCAAGCTCTTCCTCTGGCAG 59.388 55.000 8.58 8.58 0.00 4.85
857 4160 3.554934 GAGTTGCATGGTTGGATGGATA 58.445 45.455 0.00 0.00 0.00 2.59
920 4223 5.306419 TCTTCATCTCCATACTCCCAATCTG 59.694 44.000 0.00 0.00 0.00 2.90
973 4276 3.367646 ACGAGTCCTCTTCTCCATACA 57.632 47.619 0.00 0.00 0.00 2.29
986 4289 1.962822 CATACAGCCGGCATCGCAT 60.963 57.895 31.54 9.92 34.56 4.73
988 4291 0.390340 ATACAGCCGGCATCGCATAG 60.390 55.000 31.54 9.74 34.56 2.23
1118 4421 4.322499 GGTAGAGATCTAGAGAGGGAGACG 60.322 54.167 0.00 0.00 0.00 4.18
1125 4428 2.943036 AGAGAGGGAGACGGATAGAC 57.057 55.000 0.00 0.00 0.00 2.59
1171 4498 5.546526 TCATATATGTGTGTGTGTGTGTGT 58.453 37.500 12.42 0.00 0.00 3.72
1172 4499 5.407995 TCATATATGTGTGTGTGTGTGTGTG 59.592 40.000 12.42 0.00 0.00 3.82
1173 4500 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
1174 4501 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1175 4502 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1176 4503 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1177 4504 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1551 4878 1.089920 CAGCTTCAGTATGGTGGCAC 58.910 55.000 9.70 9.70 36.16 5.01
1552 4879 0.692476 AGCTTCAGTATGGTGGCACA 59.308 50.000 20.82 6.09 36.16 4.57
1609 4939 4.406972 AGCTTCCTTGACATGAGCATACTA 59.593 41.667 0.00 0.00 35.86 1.82
1853 5193 1.286248 GGATCCCCAACACAGGTACT 58.714 55.000 0.00 0.00 43.88 2.73
1873 5213 1.689813 TCCTTGCGTCTTCAGTTACCA 59.310 47.619 0.00 0.00 0.00 3.25
1909 5254 0.792640 CTTAGTTCACGCACTGCAGG 59.207 55.000 19.93 8.27 0.00 4.85
1929 5274 2.626840 GTCATTCTTGGCTCTGGTCTC 58.373 52.381 0.00 0.00 0.00 3.36
2195 5541 4.584325 TGAAACAGATTCCTTGGTTTCCAG 59.416 41.667 12.03 0.00 45.16 3.86
2423 5806 4.184629 CTCCTAACTGGTCCTCATTTTCG 58.815 47.826 0.00 0.00 37.07 3.46
2472 5856 7.148672 CGATGCAACATTAATTTAAGCCAAACA 60.149 33.333 0.00 0.00 0.00 2.83
2840 6224 2.037901 CCATGCTTCCTCTGAGCTCTA 58.962 52.381 16.19 2.03 40.75 2.43
2964 6363 2.288030 ACCGATGGGACGACGAATTATC 60.288 50.000 0.00 0.00 36.97 1.75
3084 6505 1.202348 GGGTTGTCTGCCATAAACAGC 59.798 52.381 0.00 0.00 35.04 4.40
3113 6534 2.361230 GAGGGAAAGTTGCCGGGG 60.361 66.667 2.18 0.00 44.30 5.73
3143 6564 2.749839 GCCATGCAGCGGGTAACA 60.750 61.111 7.05 0.00 39.74 2.41
3149 6570 1.548081 TGCAGCGGGTAACACTAGTA 58.452 50.000 0.00 0.00 39.74 1.82
3150 6571 1.475280 TGCAGCGGGTAACACTAGTAG 59.525 52.381 0.00 0.00 39.74 2.57
3151 6572 1.747355 GCAGCGGGTAACACTAGTAGA 59.253 52.381 3.59 0.00 39.74 2.59
3152 6573 2.165030 GCAGCGGGTAACACTAGTAGAA 59.835 50.000 3.59 0.00 39.74 2.10
3153 6574 3.367703 GCAGCGGGTAACACTAGTAGAAA 60.368 47.826 3.59 0.00 39.74 2.52
3154 6575 4.813027 CAGCGGGTAACACTAGTAGAAAA 58.187 43.478 3.59 0.00 39.74 2.29
3155 6576 4.624452 CAGCGGGTAACACTAGTAGAAAAC 59.376 45.833 3.59 0.00 39.74 2.43
3156 6577 4.281688 AGCGGGTAACACTAGTAGAAAACA 59.718 41.667 3.59 0.00 39.74 2.83
3157 6578 4.624452 GCGGGTAACACTAGTAGAAAACAG 59.376 45.833 3.59 0.00 39.74 3.16
3158 6579 5.166398 CGGGTAACACTAGTAGAAAACAGG 58.834 45.833 3.59 0.00 39.74 4.00
3159 6580 5.485620 GGGTAACACTAGTAGAAAACAGGG 58.514 45.833 3.59 0.00 39.74 4.45
3160 6581 4.934001 GGTAACACTAGTAGAAAACAGGGC 59.066 45.833 3.59 0.00 0.00 5.19
3161 6582 4.976540 AACACTAGTAGAAAACAGGGCT 57.023 40.909 3.59 0.00 0.00 5.19
3162 6583 4.976540 ACACTAGTAGAAAACAGGGCTT 57.023 40.909 3.59 0.00 0.00 4.35
3163 6584 5.306114 ACACTAGTAGAAAACAGGGCTTT 57.694 39.130 3.59 0.00 0.00 3.51
3164 6585 5.691896 ACACTAGTAGAAAACAGGGCTTTT 58.308 37.500 3.59 0.00 0.00 2.27
3165 6586 5.531287 ACACTAGTAGAAAACAGGGCTTTTG 59.469 40.000 3.59 0.00 0.00 2.44
3166 6587 5.531287 CACTAGTAGAAAACAGGGCTTTTGT 59.469 40.000 3.59 0.00 0.00 2.83
3167 6588 5.763698 ACTAGTAGAAAACAGGGCTTTTGTC 59.236 40.000 3.59 0.00 0.00 3.18
3168 6589 4.532834 AGTAGAAAACAGGGCTTTTGTCA 58.467 39.130 0.00 0.00 0.00 3.58
3169 6590 3.801114 AGAAAACAGGGCTTTTGTCAC 57.199 42.857 0.00 0.00 0.00 3.67
3170 6591 3.096092 AGAAAACAGGGCTTTTGTCACA 58.904 40.909 0.00 0.00 0.00 3.58
3171 6592 3.131046 AGAAAACAGGGCTTTTGTCACAG 59.869 43.478 0.00 0.00 0.00 3.66
3172 6593 1.402787 AACAGGGCTTTTGTCACAGG 58.597 50.000 0.00 0.00 0.00 4.00
3173 6594 0.468029 ACAGGGCTTTTGTCACAGGG 60.468 55.000 0.00 0.00 0.00 4.45
3174 6595 1.531602 AGGGCTTTTGTCACAGGGC 60.532 57.895 0.00 0.00 0.00 5.19
3175 6596 1.832167 GGGCTTTTGTCACAGGGCA 60.832 57.895 0.00 0.00 0.00 5.36
3176 6597 1.662044 GGCTTTTGTCACAGGGCAG 59.338 57.895 2.10 0.00 0.00 4.85
3177 6598 1.109323 GGCTTTTGTCACAGGGCAGT 61.109 55.000 2.10 0.00 0.00 4.40
3178 6599 1.604604 GCTTTTGTCACAGGGCAGTA 58.395 50.000 0.00 0.00 0.00 2.74
3179 6600 2.162681 GCTTTTGTCACAGGGCAGTAT 58.837 47.619 0.00 0.00 0.00 2.12
3180 6601 2.558359 GCTTTTGTCACAGGGCAGTATT 59.442 45.455 0.00 0.00 0.00 1.89
3181 6602 3.366374 GCTTTTGTCACAGGGCAGTATTC 60.366 47.826 0.00 0.00 0.00 1.75
3182 6603 3.500448 TTTGTCACAGGGCAGTATTCA 57.500 42.857 0.00 0.00 0.00 2.57
3183 6604 2.472695 TGTCACAGGGCAGTATTCAC 57.527 50.000 0.00 0.00 0.00 3.18
3184 6605 1.696884 TGTCACAGGGCAGTATTCACA 59.303 47.619 0.00 0.00 0.00 3.58
3185 6606 2.305635 TGTCACAGGGCAGTATTCACAT 59.694 45.455 0.00 0.00 0.00 3.21
3186 6607 3.244875 TGTCACAGGGCAGTATTCACATT 60.245 43.478 0.00 0.00 0.00 2.71
3187 6608 4.019771 TGTCACAGGGCAGTATTCACATTA 60.020 41.667 0.00 0.00 0.00 1.90
3188 6609 4.572389 GTCACAGGGCAGTATTCACATTAG 59.428 45.833 0.00 0.00 0.00 1.73
3189 6610 4.225042 TCACAGGGCAGTATTCACATTAGT 59.775 41.667 0.00 0.00 0.00 2.24
3190 6611 4.572389 CACAGGGCAGTATTCACATTAGTC 59.428 45.833 0.00 0.00 0.00 2.59
3191 6612 4.471386 ACAGGGCAGTATTCACATTAGTCT 59.529 41.667 0.00 0.00 0.00 3.24
3192 6613 5.053145 CAGGGCAGTATTCACATTAGTCTC 58.947 45.833 0.00 0.00 0.00 3.36
3193 6614 4.051922 GGGCAGTATTCACATTAGTCTCG 58.948 47.826 0.00 0.00 0.00 4.04
3194 6615 4.051922 GGCAGTATTCACATTAGTCTCGG 58.948 47.826 0.00 0.00 0.00 4.63
3195 6616 4.441634 GGCAGTATTCACATTAGTCTCGGT 60.442 45.833 0.00 0.00 0.00 4.69
3196 6617 5.109903 GCAGTATTCACATTAGTCTCGGTT 58.890 41.667 0.00 0.00 0.00 4.44
3197 6618 5.232414 GCAGTATTCACATTAGTCTCGGTTC 59.768 44.000 0.00 0.00 0.00 3.62
3198 6619 6.330278 CAGTATTCACATTAGTCTCGGTTCA 58.670 40.000 0.00 0.00 0.00 3.18
3199 6620 6.473778 CAGTATTCACATTAGTCTCGGTTCAG 59.526 42.308 0.00 0.00 0.00 3.02
3200 6621 4.866508 TTCACATTAGTCTCGGTTCAGT 57.133 40.909 0.00 0.00 0.00 3.41
3201 6622 4.436242 TCACATTAGTCTCGGTTCAGTC 57.564 45.455 0.00 0.00 0.00 3.51
3202 6623 3.824443 TCACATTAGTCTCGGTTCAGTCA 59.176 43.478 0.00 0.00 0.00 3.41
3203 6624 3.921021 CACATTAGTCTCGGTTCAGTCAC 59.079 47.826 0.00 0.00 0.00 3.67
3204 6625 2.983402 TTAGTCTCGGTTCAGTCACG 57.017 50.000 0.00 0.00 0.00 4.35
3205 6626 2.174363 TAGTCTCGGTTCAGTCACGA 57.826 50.000 0.00 0.00 35.14 4.35
3206 6627 1.315690 AGTCTCGGTTCAGTCACGAA 58.684 50.000 0.00 0.00 36.08 3.85
3207 6628 1.001597 AGTCTCGGTTCAGTCACGAAC 60.002 52.381 0.00 4.51 43.75 3.95
3211 6632 3.946907 GTTCAGTCACGAACCCGG 58.053 61.111 0.00 0.00 39.52 5.73
3212 6633 1.364901 GTTCAGTCACGAACCCGGA 59.635 57.895 0.73 0.00 39.52 5.14
3213 6634 0.942884 GTTCAGTCACGAACCCGGAC 60.943 60.000 0.73 0.00 39.52 4.79
3214 6635 1.111116 TTCAGTCACGAACCCGGACT 61.111 55.000 0.73 0.00 42.64 3.85
3215 6636 0.250858 TCAGTCACGAACCCGGACTA 60.251 55.000 0.73 0.00 41.18 2.59
3216 6637 0.599558 CAGTCACGAACCCGGACTAA 59.400 55.000 0.73 0.00 41.18 2.24
3217 6638 1.203994 CAGTCACGAACCCGGACTAAT 59.796 52.381 0.73 0.00 41.18 1.73
3218 6639 1.203994 AGTCACGAACCCGGACTAATG 59.796 52.381 0.73 0.00 41.26 1.90
3219 6640 1.067354 GTCACGAACCCGGACTAATGT 60.067 52.381 0.73 0.00 40.78 2.71
3220 6641 1.067425 TCACGAACCCGGACTAATGTG 60.067 52.381 0.73 3.99 40.78 3.21
3221 6642 1.067425 CACGAACCCGGACTAATGTGA 60.067 52.381 0.73 0.00 40.78 3.58
3222 6643 1.203994 ACGAACCCGGACTAATGTGAG 59.796 52.381 0.73 0.00 40.78 3.51
3223 6644 1.653151 GAACCCGGACTAATGTGAGC 58.347 55.000 0.73 0.00 0.00 4.26
3224 6645 0.981183 AACCCGGACTAATGTGAGCA 59.019 50.000 0.73 0.00 0.00 4.26
3225 6646 1.204146 ACCCGGACTAATGTGAGCAT 58.796 50.000 0.73 0.00 36.80 3.79
3226 6647 1.559682 ACCCGGACTAATGTGAGCATT 59.440 47.619 0.73 0.00 46.14 3.56
3227 6648 2.213499 CCCGGACTAATGTGAGCATTC 58.787 52.381 0.73 0.00 43.61 2.67
3228 6649 1.860950 CCGGACTAATGTGAGCATTCG 59.139 52.381 0.00 0.00 43.61 3.34
3229 6650 2.540515 CGGACTAATGTGAGCATTCGT 58.459 47.619 0.00 0.00 43.61 3.85
3232 6653 2.866762 GACTAATGTGAGCATTCGTCCC 59.133 50.000 11.50 0.00 44.88 4.46
3233 6654 1.860950 CTAATGTGAGCATTCGTCCCG 59.139 52.381 0.00 0.00 43.61 5.14
3234 6655 0.744414 AATGTGAGCATTCGTCCCGG 60.744 55.000 0.00 0.00 41.08 5.73
3235 6656 1.899437 ATGTGAGCATTCGTCCCGGT 61.899 55.000 0.00 0.00 29.54 5.28
3236 6657 1.375523 GTGAGCATTCGTCCCGGTT 60.376 57.895 0.00 0.00 0.00 4.44
3237 6658 1.079405 TGAGCATTCGTCCCGGTTC 60.079 57.895 0.00 0.00 0.00 3.62
3238 6659 2.125673 AGCATTCGTCCCGGTTCG 60.126 61.111 0.00 4.79 0.00 3.95
3248 6669 2.202703 CCGGTTCGGGCGACTAAG 60.203 66.667 0.00 0.00 44.15 2.18
3249 6670 2.202703 CGGTTCGGGCGACTAAGG 60.203 66.667 0.00 0.00 0.00 2.69
3250 6671 2.510918 GGTTCGGGCGACTAAGGC 60.511 66.667 0.00 0.00 0.00 4.35
3251 6672 2.263540 GTTCGGGCGACTAAGGCA 59.736 61.111 0.00 0.00 38.57 4.75
3252 6673 1.153429 GTTCGGGCGACTAAGGCAT 60.153 57.895 0.00 0.00 38.57 4.40
3253 6674 0.743345 GTTCGGGCGACTAAGGCATT 60.743 55.000 0.00 0.00 38.57 3.56
3254 6675 0.825410 TTCGGGCGACTAAGGCATTA 59.175 50.000 0.00 0.00 38.57 1.90
3255 6676 0.387929 TCGGGCGACTAAGGCATTAG 59.612 55.000 16.24 16.24 43.50 1.73
3264 6685 2.835027 CTAAGGCATTAGTCCCGGTTC 58.165 52.381 9.96 0.00 34.77 3.62
3265 6686 0.988832 AAGGCATTAGTCCCGGTTCA 59.011 50.000 0.00 0.00 0.00 3.18
3266 6687 0.252197 AGGCATTAGTCCCGGTTCAC 59.748 55.000 0.00 0.00 0.00 3.18
3267 6688 0.746923 GGCATTAGTCCCGGTTCACC 60.747 60.000 0.00 0.00 0.00 4.02
3268 6689 0.252197 GCATTAGTCCCGGTTCACCT 59.748 55.000 0.00 0.00 0.00 4.00
3269 6690 2.012051 GCATTAGTCCCGGTTCACCTG 61.012 57.143 0.00 0.00 0.00 4.00
3270 6691 0.909623 ATTAGTCCCGGTTCACCTGG 59.090 55.000 0.00 0.00 41.25 4.45
3271 6692 1.196104 TTAGTCCCGGTTCACCTGGG 61.196 60.000 15.89 15.89 45.27 4.45
3272 6693 4.717313 GTCCCGGTTCACCTGGGC 62.717 72.222 16.78 7.94 44.29 5.36
3276 6697 3.966543 CGGTTCACCTGGGCCCTT 61.967 66.667 25.70 3.96 0.00 3.95
3277 6698 2.526110 GGTTCACCTGGGCCCTTT 59.474 61.111 25.70 3.52 0.00 3.11
3278 6699 1.771646 GGTTCACCTGGGCCCTTTA 59.228 57.895 25.70 0.48 0.00 1.85
3279 6700 0.323451 GGTTCACCTGGGCCCTTTAG 60.323 60.000 25.70 12.48 0.00 1.85
3280 6701 0.404426 GTTCACCTGGGCCCTTTAGT 59.596 55.000 25.70 12.09 0.00 2.24
3281 6702 0.696501 TTCACCTGGGCCCTTTAGTC 59.303 55.000 25.70 0.00 0.00 2.59
3282 6703 1.205460 TCACCTGGGCCCTTTAGTCC 61.205 60.000 25.70 0.00 0.00 3.85
3283 6704 1.929088 ACCTGGGCCCTTTAGTCCC 60.929 63.158 25.70 0.00 40.47 4.46
3284 6705 2.590092 CTGGGCCCTTTAGTCCCG 59.410 66.667 25.70 0.00 42.98 5.14
3285 6706 3.012722 TGGGCCCTTTAGTCCCGG 61.013 66.667 25.70 0.00 42.98 5.73
3286 6707 3.013327 GGGCCCTTTAGTCCCGGT 61.013 66.667 17.04 0.00 0.00 5.28
3287 6708 2.609534 GGGCCCTTTAGTCCCGGTT 61.610 63.158 17.04 0.00 0.00 4.44
3288 6709 1.378119 GGCCCTTTAGTCCCGGTTG 60.378 63.158 0.00 0.00 0.00 3.77
3289 6710 1.378119 GCCCTTTAGTCCCGGTTGG 60.378 63.158 0.00 0.00 0.00 3.77
3290 6711 2.072366 CCCTTTAGTCCCGGTTGGT 58.928 57.895 0.00 0.00 34.77 3.67
3291 6712 0.322187 CCCTTTAGTCCCGGTTGGTG 60.322 60.000 0.00 0.00 34.77 4.17
3292 6713 0.958876 CCTTTAGTCCCGGTTGGTGC 60.959 60.000 0.00 0.00 34.77 5.01
3293 6714 0.958876 CTTTAGTCCCGGTTGGTGCC 60.959 60.000 0.00 0.00 34.77 5.01
3294 6715 1.706995 TTTAGTCCCGGTTGGTGCCA 61.707 55.000 0.00 0.00 34.77 4.92
3295 6716 2.400269 TTAGTCCCGGTTGGTGCCAC 62.400 60.000 0.00 0.00 34.77 5.01
3298 6719 4.939368 CCCGGTTGGTGCCACGAA 62.939 66.667 0.00 0.00 0.00 3.85
3299 6720 3.656045 CCGGTTGGTGCCACGAAC 61.656 66.667 13.59 13.59 36.30 3.95
3301 6722 3.656045 GGTTGGTGCCACGAACCG 61.656 66.667 23.24 0.00 44.79 4.44
3302 6723 3.656045 GTTGGTGCCACGAACCGG 61.656 66.667 11.21 0.00 40.86 5.28
3303 6724 4.939368 TTGGTGCCACGAACCGGG 62.939 66.667 6.32 0.00 40.86 5.73
3306 6727 4.309950 GTGCCACGAACCGGGACT 62.310 66.667 6.32 0.00 41.35 3.85
3307 6728 2.601067 TGCCACGAACCGGGACTA 60.601 61.111 6.32 0.00 28.17 2.59
3308 6729 2.208619 TGCCACGAACCGGGACTAA 61.209 57.895 6.32 0.00 28.17 2.24
3309 6730 1.004679 GCCACGAACCGGGACTAAA 60.005 57.895 6.32 0.00 28.17 1.85
3310 6731 1.017701 GCCACGAACCGGGACTAAAG 61.018 60.000 6.32 0.00 28.17 1.85
3311 6732 0.390735 CCACGAACCGGGACTAAAGG 60.391 60.000 6.32 0.00 28.17 3.11
3312 6733 0.390735 CACGAACCGGGACTAAAGGG 60.391 60.000 6.32 0.00 28.17 3.95
3313 6734 0.833409 ACGAACCGGGACTAAAGGGT 60.833 55.000 6.32 0.00 0.00 4.34
3314 6735 0.390735 CGAACCGGGACTAAAGGGTG 60.391 60.000 6.32 0.00 31.96 4.61
3315 6736 0.675837 GAACCGGGACTAAAGGGTGC 60.676 60.000 6.32 0.00 31.96 5.01
3316 6737 2.125269 CCGGGACTAAAGGGTGCG 60.125 66.667 0.00 0.00 0.00 5.34
3317 6738 2.652095 CCGGGACTAAAGGGTGCGA 61.652 63.158 0.00 0.00 0.00 5.10
3318 6739 1.520666 CGGGACTAAAGGGTGCGAT 59.479 57.895 0.00 0.00 0.00 4.58
3319 6740 0.810031 CGGGACTAAAGGGTGCGATG 60.810 60.000 0.00 0.00 0.00 3.84
3320 6741 1.095807 GGGACTAAAGGGTGCGATGC 61.096 60.000 0.00 0.00 0.00 3.91
3321 6742 1.095807 GGACTAAAGGGTGCGATGCC 61.096 60.000 0.00 0.00 0.00 4.40
3322 6743 1.077716 ACTAAAGGGTGCGATGCCC 60.078 57.895 1.67 1.67 46.43 5.36
3327 6748 3.749981 GGGTGCGATGCCCATTAG 58.250 61.111 4.76 0.00 45.40 1.73
3328 6749 1.152963 GGGTGCGATGCCCATTAGT 60.153 57.895 4.76 0.00 45.40 2.24
3329 6750 0.107831 GGGTGCGATGCCCATTAGTA 59.892 55.000 4.76 0.00 45.40 1.82
3330 6751 1.226746 GGTGCGATGCCCATTAGTAC 58.773 55.000 0.00 0.00 0.00 2.73
3331 6752 1.226746 GTGCGATGCCCATTAGTACC 58.773 55.000 0.00 0.00 0.00 3.34
3332 6753 0.249699 TGCGATGCCCATTAGTACCG 60.250 55.000 0.00 0.00 0.00 4.02
3333 6754 0.949105 GCGATGCCCATTAGTACCGG 60.949 60.000 0.00 0.00 0.00 5.28
3334 6755 0.391597 CGATGCCCATTAGTACCGGT 59.608 55.000 13.98 13.98 0.00 5.28
3335 6756 1.202604 CGATGCCCATTAGTACCGGTT 60.203 52.381 15.04 0.00 0.00 4.44
3336 6757 2.218603 GATGCCCATTAGTACCGGTTG 58.781 52.381 15.04 3.82 0.00 3.77
3337 6758 0.253610 TGCCCATTAGTACCGGTTGG 59.746 55.000 15.04 14.60 42.84 3.77
3353 6774 2.668550 GGTGGCACCAACCGAGAC 60.669 66.667 31.26 0.00 38.42 3.36
3354 6775 2.426023 GTGGCACCAACCGAGACT 59.574 61.111 6.29 0.00 0.00 3.24
3355 6776 1.669440 GTGGCACCAACCGAGACTA 59.331 57.895 6.29 0.00 0.00 2.59
3356 6777 0.034337 GTGGCACCAACCGAGACTAA 59.966 55.000 6.29 0.00 0.00 2.24
3357 6778 0.759959 TGGCACCAACCGAGACTAAA 59.240 50.000 0.00 0.00 0.00 1.85
3358 6779 1.270625 TGGCACCAACCGAGACTAAAG 60.271 52.381 0.00 0.00 0.00 1.85
3359 6780 1.439679 GCACCAACCGAGACTAAAGG 58.560 55.000 0.00 0.00 0.00 3.11
3360 6781 1.270678 GCACCAACCGAGACTAAAGGT 60.271 52.381 0.00 0.00 40.50 3.50
3362 6783 3.555586 GCACCAACCGAGACTAAAGGTTA 60.556 47.826 8.58 0.00 45.52 2.85
3363 6784 4.243270 CACCAACCGAGACTAAAGGTTAG 58.757 47.826 8.58 5.42 45.52 2.34
3364 6785 4.021719 CACCAACCGAGACTAAAGGTTAGA 60.022 45.833 8.58 0.00 45.52 2.10
3365 6786 4.021632 ACCAACCGAGACTAAAGGTTAGAC 60.022 45.833 8.58 0.00 45.52 2.59
3366 6787 4.492611 CAACCGAGACTAAAGGTTAGACC 58.507 47.826 8.58 0.00 45.52 3.85
3367 6788 2.751806 ACCGAGACTAAAGGTTAGACCG 59.248 50.000 2.11 2.92 44.90 4.79
3368 6789 3.012518 CCGAGACTAAAGGTTAGACCGA 58.987 50.000 2.11 0.00 44.90 4.69
3369 6790 3.441572 CCGAGACTAAAGGTTAGACCGAA 59.558 47.826 2.11 0.00 44.90 4.30
3370 6791 4.082571 CCGAGACTAAAGGTTAGACCGAAA 60.083 45.833 2.11 0.00 44.90 3.46
3371 6792 4.855937 CGAGACTAAAGGTTAGACCGAAAC 59.144 45.833 2.11 0.00 44.90 2.78
3372 6793 5.335504 CGAGACTAAAGGTTAGACCGAAACT 60.336 44.000 2.11 0.00 44.90 2.66
3373 6794 6.416631 AGACTAAAGGTTAGACCGAAACTT 57.583 37.500 2.11 0.00 44.90 2.66
3374 6795 7.530426 AGACTAAAGGTTAGACCGAAACTTA 57.470 36.000 2.11 0.00 44.90 2.24
3375 6796 8.131847 AGACTAAAGGTTAGACCGAAACTTAT 57.868 34.615 2.11 0.00 44.90 1.73
3376 6797 8.591940 AGACTAAAGGTTAGACCGAAACTTATT 58.408 33.333 2.11 0.00 44.90 1.40
3377 6798 9.212641 GACTAAAGGTTAGACCGAAACTTATTT 57.787 33.333 2.11 0.00 44.90 1.40
3378 6799 9.565090 ACTAAAGGTTAGACCGAAACTTATTTT 57.435 29.630 2.11 0.00 44.90 1.82
3411 6832 9.835389 TTTCTTTGACATTTCCATCATTTTCTT 57.165 25.926 0.00 0.00 0.00 2.52
3412 6833 9.835389 TTCTTTGACATTTCCATCATTTTCTTT 57.165 25.926 0.00 0.00 0.00 2.52
3413 6834 9.835389 TCTTTGACATTTCCATCATTTTCTTTT 57.165 25.926 0.00 0.00 0.00 2.27
3414 6835 9.872757 CTTTGACATTTCCATCATTTTCTTTTG 57.127 29.630 0.00 0.00 0.00 2.44
3415 6836 8.961294 TTGACATTTCCATCATTTTCTTTTGT 57.039 26.923 0.00 0.00 0.00 2.83
3416 6837 8.961294 TGACATTTCCATCATTTTCTTTTGTT 57.039 26.923 0.00 0.00 0.00 2.83
3417 6838 9.393512 TGACATTTCCATCATTTTCTTTTGTTT 57.606 25.926 0.00 0.00 0.00 2.83
3439 6860 5.585820 TTTTCTAAAACTGAAAAGGCGGT 57.414 34.783 0.00 0.00 38.15 5.68
3440 6861 4.561735 TTCTAAAACTGAAAAGGCGGTG 57.438 40.909 0.00 0.00 0.00 4.94
3441 6862 2.882137 TCTAAAACTGAAAAGGCGGTGG 59.118 45.455 0.00 0.00 0.00 4.61
3442 6863 0.750249 AAAACTGAAAAGGCGGTGGG 59.250 50.000 0.00 0.00 0.00 4.61
3443 6864 1.112916 AAACTGAAAAGGCGGTGGGG 61.113 55.000 0.00 0.00 0.00 4.96
3444 6865 2.002018 AACTGAAAAGGCGGTGGGGA 62.002 55.000 0.00 0.00 0.00 4.81
3445 6866 1.675641 CTGAAAAGGCGGTGGGGAG 60.676 63.158 0.00 0.00 0.00 4.30
3446 6867 2.361230 GAAAAGGCGGTGGGGAGG 60.361 66.667 0.00 0.00 0.00 4.30
3447 6868 3.938637 GAAAAGGCGGTGGGGAGGG 62.939 68.421 0.00 0.00 0.00 4.30
3468 6889 3.096852 GGGGGTAGAGTTTGAAAATGGG 58.903 50.000 0.00 0.00 0.00 4.00
3469 6890 3.245479 GGGGGTAGAGTTTGAAAATGGGA 60.245 47.826 0.00 0.00 0.00 4.37
3470 6891 3.762288 GGGGTAGAGTTTGAAAATGGGAC 59.238 47.826 0.00 0.00 0.00 4.46
3471 6892 3.762288 GGGTAGAGTTTGAAAATGGGACC 59.238 47.826 0.00 0.00 0.00 4.46
3472 6893 4.508584 GGGTAGAGTTTGAAAATGGGACCT 60.509 45.833 0.00 0.00 0.00 3.85
3473 6894 5.077564 GGTAGAGTTTGAAAATGGGACCTT 58.922 41.667 0.00 0.00 0.00 3.50
3474 6895 5.538813 GGTAGAGTTTGAAAATGGGACCTTT 59.461 40.000 0.00 0.00 0.00 3.11
3475 6896 6.717997 GGTAGAGTTTGAAAATGGGACCTTTA 59.282 38.462 0.00 0.00 0.00 1.85
3476 6897 6.901081 AGAGTTTGAAAATGGGACCTTTAG 57.099 37.500 0.00 0.00 0.00 1.85
3477 6898 6.373759 AGAGTTTGAAAATGGGACCTTTAGT 58.626 36.000 0.00 0.00 0.00 2.24
3478 6899 7.523415 AGAGTTTGAAAATGGGACCTTTAGTA 58.477 34.615 0.00 0.00 0.00 1.82
3479 6900 7.447545 AGAGTTTGAAAATGGGACCTTTAGTAC 59.552 37.037 0.00 0.00 0.00 2.73
3485 6906 2.680312 GGGACCTTTAGTACCGGTTC 57.320 55.000 15.04 8.12 40.68 3.62
3486 6907 1.134995 GGGACCTTTAGTACCGGTTCG 60.135 57.143 15.04 0.00 40.68 3.95
3782 7203 3.815809 TGTGGTCTAGTTGTTGGGAAAG 58.184 45.455 0.00 0.00 0.00 2.62
4313 7775 5.819901 CAGACTTGGAAATGAGGGAGAATAC 59.180 44.000 0.00 0.00 0.00 1.89
4337 7800 1.144969 CGGAAGTTAAGCGTGCTCAA 58.855 50.000 0.00 0.00 0.00 3.02
4364 7827 0.618968 GAGTGGGAGGATGGGTGACT 60.619 60.000 0.00 0.00 0.00 3.41
4538 8014 3.744238 AATTTCCTTTTGTCCCGGTTG 57.256 42.857 0.00 0.00 0.00 3.77
4539 8015 1.404843 TTTCCTTTTGTCCCGGTTGG 58.595 50.000 0.00 0.00 0.00 3.77
4540 8016 7.663823 AAAATTTCCTTTTGTCCCGGTTGGG 62.664 44.000 0.00 0.00 45.20 4.12
4551 8027 0.251430 CCGGTTGGGGTTGGTGTTAT 60.251 55.000 0.00 0.00 0.00 1.89
4567 8043 4.322953 GGTGTTATCAACCGGGACTAAAGA 60.323 45.833 6.32 0.00 0.00 2.52
4662 8138 1.185315 CGACCCTTTAGTCCCGGTTA 58.815 55.000 0.00 0.00 32.91 2.85
4682 8158 1.971481 AAAAACCGGGACTAAAGCGT 58.029 45.000 6.32 0.00 0.00 5.07
4706 8183 1.830408 CAACCGGGACAAAAGCCCA 60.830 57.895 6.32 0.00 46.36 5.36
4718 8195 6.014925 GGGACAAAAGCCCATTTTTCTACTAA 60.015 38.462 0.00 0.00 45.31 2.24
4724 8201 9.923143 AAAAGCCCATTTTTCTACTAATGTAAC 57.077 29.630 0.00 0.00 37.89 2.50
4752 8229 5.868454 TGAATTCTTCACTCCATCACAAGA 58.132 37.500 7.05 0.00 34.08 3.02
4898 8377 0.771127 ATTATGCATACGGCCAGGGT 59.229 50.000 5.74 0.00 43.89 4.34
5027 8506 6.298361 TGGCTGTATGCATCTTGTTATGTAT 58.702 36.000 0.19 0.00 45.15 2.29
5049 8528 3.417101 TGGCCGTGTATTCTTTCATTGT 58.583 40.909 0.00 0.00 0.00 2.71
5343 8836 2.479049 GCGTCGATGTAAGCCTAGTCAA 60.479 50.000 6.48 0.00 0.00 3.18
5436 8945 1.626356 TTGGCAGGATCCCGAAGAGG 61.626 60.000 8.55 0.00 40.63 3.69
5535 9044 2.754465 TCCCAACGAATTAGGCTCCTA 58.246 47.619 0.00 0.00 0.00 2.94
5567 9076 7.697691 AGTAATGTCTTATTTTTCATGCTCGG 58.302 34.615 0.00 0.00 0.00 4.63
5572 9081 5.000591 TCTTATTTTTCATGCTCGGTCACA 58.999 37.500 0.00 0.00 0.00 3.58
5770 9299 1.135859 GTGTGAGCAGCTTGAATTCGG 60.136 52.381 0.00 0.00 0.00 4.30
5793 9322 5.009110 GGAGGCTTTTCCATGCTTTATACTC 59.991 44.000 0.00 0.00 37.20 2.59
5794 9323 4.889995 AGGCTTTTCCATGCTTTATACTCC 59.110 41.667 0.00 0.00 37.29 3.85
5795 9324 4.038042 GGCTTTTCCATGCTTTATACTCCC 59.962 45.833 0.00 0.00 34.01 4.30
5796 9325 4.889995 GCTTTTCCATGCTTTATACTCCCT 59.110 41.667 0.00 0.00 0.00 4.20
5797 9326 5.009110 GCTTTTCCATGCTTTATACTCCCTC 59.991 44.000 0.00 0.00 0.00 4.30
5798 9327 4.706842 TTCCATGCTTTATACTCCCTCC 57.293 45.455 0.00 0.00 0.00 4.30
5799 9328 2.632996 TCCATGCTTTATACTCCCTCCG 59.367 50.000 0.00 0.00 0.00 4.63
5800 9329 2.368875 CCATGCTTTATACTCCCTCCGT 59.631 50.000 0.00 0.00 0.00 4.69
5801 9330 3.181454 CCATGCTTTATACTCCCTCCGTT 60.181 47.826 0.00 0.00 0.00 4.44
5802 9331 3.814005 TGCTTTATACTCCCTCCGTTC 57.186 47.619 0.00 0.00 0.00 3.95
5803 9332 2.433239 TGCTTTATACTCCCTCCGTTCC 59.567 50.000 0.00 0.00 0.00 3.62
5804 9333 2.699321 GCTTTATACTCCCTCCGTTCCT 59.301 50.000 0.00 0.00 0.00 3.36
5805 9334 3.893813 GCTTTATACTCCCTCCGTTCCTA 59.106 47.826 0.00 0.00 0.00 2.94
5806 9335 4.343239 GCTTTATACTCCCTCCGTTCCTAA 59.657 45.833 0.00 0.00 0.00 2.69
5807 9336 5.163374 GCTTTATACTCCCTCCGTTCCTAAA 60.163 44.000 0.00 0.00 0.00 1.85
5808 9337 6.464039 GCTTTATACTCCCTCCGTTCCTAAAT 60.464 42.308 0.00 0.00 0.00 1.40
5809 9338 7.256083 GCTTTATACTCCCTCCGTTCCTAAATA 60.256 40.741 0.00 0.00 0.00 1.40
5810 9339 8.731591 TTTATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
5811 9340 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
5812 9341 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5813 9342 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5814 9343 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5815 9344 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5816 9345 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5817 9346 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5818 9347 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5819 9348 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5820 9349 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5821 9350 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5822 9351 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
5895 9424 8.994429 AGTATAGATTCATTTATTCTGCTCCG 57.006 34.615 0.00 0.00 0.00 4.63
5896 9425 8.589338 AGTATAGATTCATTTATTCTGCTCCGT 58.411 33.333 0.00 0.00 0.00 4.69
5897 9426 9.856488 GTATAGATTCATTTATTCTGCTCCGTA 57.144 33.333 0.00 0.00 0.00 4.02
5899 9428 7.664082 AGATTCATTTATTCTGCTCCGTATG 57.336 36.000 0.00 0.00 0.00 2.39
5900 9429 7.220030 AGATTCATTTATTCTGCTCCGTATGT 58.780 34.615 0.00 0.00 0.00 2.29
5901 9430 8.367911 AGATTCATTTATTCTGCTCCGTATGTA 58.632 33.333 0.00 0.00 0.00 2.29
5902 9431 7.946655 TTCATTTATTCTGCTCCGTATGTAG 57.053 36.000 0.00 0.00 0.00 2.74
5903 9432 7.050970 TCATTTATTCTGCTCCGTATGTAGT 57.949 36.000 0.00 0.00 0.00 2.73
5904 9433 7.145985 TCATTTATTCTGCTCCGTATGTAGTC 58.854 38.462 0.00 0.00 0.00 2.59
5905 9434 6.459670 TTTATTCTGCTCCGTATGTAGTCA 57.540 37.500 0.00 0.00 0.00 3.41
5906 9435 3.777465 TTCTGCTCCGTATGTAGTCAC 57.223 47.619 0.00 0.00 0.00 3.67
5907 9436 3.000684 TCTGCTCCGTATGTAGTCACT 57.999 47.619 0.00 0.00 0.00 3.41
5908 9437 3.353557 TCTGCTCCGTATGTAGTCACTT 58.646 45.455 0.00 0.00 0.00 3.16
5909 9438 3.128764 TCTGCTCCGTATGTAGTCACTTG 59.871 47.826 0.00 0.00 0.00 3.16
5910 9439 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5911 9440 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5912 9441 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5913 9442 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5914 9443 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5915 9444 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5916 9445 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5917 9446 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
5918 9447 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
5919 9448 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
5920 9449 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
5921 9450 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
5922 9451 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
5923 9452 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
5924 9453 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
5925 9454 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
5926 9455 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
5927 9456 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
5928 9457 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
5929 9458 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
5930 9459 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
5931 9460 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
5932 9461 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
5933 9462 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
5934 9463 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
5935 9464 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
5936 9465 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
5937 9466 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
5939 9468 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
5940 9469 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
5941 9470 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
5942 9471 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
5943 9472 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
5944 9473 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
5945 9474 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
5946 9475 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
5947 9476 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
5948 9477 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
5949 9478 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
5950 9479 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
5951 9480 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
5952 9481 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
5953 9482 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
5954 9483 6.141790 AGTATTTAGGAACGGAGGGAGTATT 58.858 40.000 0.00 0.00 0.00 1.89
6002 9531 7.870954 CCTTCCAGTTTTACCTTCAAAATAACC 59.129 37.037 0.00 0.00 30.56 2.85
6009 9538 8.558700 GTTTTACCTTCAAAATAACCGTGTCTA 58.441 33.333 0.00 0.00 30.56 2.59
6013 9542 6.150474 ACCTTCAAAATAACCGTGTCTATTGG 59.850 38.462 0.00 0.00 0.00 3.16
6128 9658 4.952262 TCAATACAGAACTAGTACGCGT 57.048 40.909 19.17 19.17 0.00 6.01
6446 11069 0.674895 CTACTGGGCTGAGTGGTTGC 60.675 60.000 0.67 0.00 0.00 4.17
6562 11185 3.557207 GTTGAGCACAGCAACCAAG 57.443 52.632 0.00 0.00 39.67 3.61
6673 11296 1.679977 CACCGTCTCCCGTCCCTTA 60.680 63.158 0.00 0.00 33.66 2.69
6681 11304 2.675242 CCCGTCCCTTATGCACCCA 61.675 63.158 0.00 0.00 0.00 4.51
6719 11342 3.853330 CATGCGTCGTCGGGCAAG 61.853 66.667 14.23 7.74 43.26 4.01
6720 11343 4.063967 ATGCGTCGTCGGGCAAGA 62.064 61.111 14.23 0.00 43.26 3.02
6721 11344 3.371097 ATGCGTCGTCGGGCAAGAT 62.371 57.895 14.23 0.00 43.26 2.40
6722 11345 2.011741 ATGCGTCGTCGGGCAAGATA 62.012 55.000 14.23 0.00 43.26 1.98
6723 11346 1.299926 GCGTCGTCGGGCAAGATAT 60.300 57.895 3.90 0.00 37.56 1.63
6736 11919 6.042781 TCGGGCAAGATATATAGTTCAACCTT 59.957 38.462 0.00 0.00 0.00 3.50
6790 11973 6.627395 TTGTCTTGACAACCGAATGTAAAT 57.373 33.333 11.62 0.00 32.57 1.40
6929 12112 1.211457 AGATCGAGCCAATCTTGCCTT 59.789 47.619 0.00 0.00 29.01 4.35
6992 12175 2.107141 GAGTCGGGGAAGATGCGG 59.893 66.667 0.00 0.00 0.00 5.69
7098 12284 1.682849 CCTTTGACCACCCGATCCA 59.317 57.895 0.00 0.00 0.00 3.41
7110 12296 1.026718 CCGATCCACCTTCACAAGCC 61.027 60.000 0.00 0.00 0.00 4.35
7114 12300 3.365265 CACCTTCACAAGCCCGGC 61.365 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 6.153680 TCTGCGGGATTGGTTACAATATTTTT 59.846 34.615 0.00 0.00 46.89 1.94
114 115 4.787551 TCTGCGGGATTGGTTACAATATT 58.212 39.130 0.00 0.00 46.89 1.28
121 122 1.444836 CGTTTCTGCGGGATTGGTTA 58.555 50.000 0.00 0.00 0.00 2.85
138 139 4.785511 AAATAGATGATACCTAGCGCGT 57.214 40.909 8.43 0.00 0.00 6.01
140 141 8.436200 CAACTTTAAATAGATGATACCTAGCGC 58.564 37.037 0.00 0.00 0.00 5.92
259 260 5.132502 TCACATTGTCCCAATGATGTATCC 58.867 41.667 20.46 0.00 31.92 2.59
264 265 3.064408 CGTCTCACATTGTCCCAATGATG 59.936 47.826 20.46 14.80 0.00 3.07
268 269 2.813754 CAACGTCTCACATTGTCCCAAT 59.186 45.455 0.00 0.00 0.00 3.16
273 274 5.692204 CCTATATCCAACGTCTCACATTGTC 59.308 44.000 0.00 0.00 0.00 3.18
277 278 7.540474 AATACCTATATCCAACGTCTCACAT 57.460 36.000 0.00 0.00 0.00 3.21
278 279 6.293790 CGAATACCTATATCCAACGTCTCACA 60.294 42.308 0.00 0.00 0.00 3.58
283 284 5.382618 ACCGAATACCTATATCCAACGTC 57.617 43.478 0.00 0.00 0.00 4.34
290 291 7.490000 CCATCCAACTACCGAATACCTATATC 58.510 42.308 0.00 0.00 0.00 1.63
302 303 0.824109 TCTGAGCCATCCAACTACCG 59.176 55.000 0.00 0.00 0.00 4.02
306 307 3.552875 CAATGATCTGAGCCATCCAACT 58.447 45.455 0.00 0.00 0.00 3.16
319 320 6.546403 CAGGAGTTTGATGAATCCAATGATCT 59.454 38.462 0.00 0.00 34.08 2.75
380 382 8.812329 TGTAAATTGCATTAATCGTAATTTGGC 58.188 29.630 21.97 17.74 38.54 4.52
461 3760 3.560025 GCCATCCAACCACCTATATCCAG 60.560 52.174 0.00 0.00 0.00 3.86
484 3783 5.565592 TTTGATGAGTTCAAATGATCGGG 57.434 39.130 0.00 0.00 46.80 5.14
496 3795 7.079182 TGTAAAAACACGAGTTTGATGAGTT 57.921 32.000 11.77 4.23 46.79 3.01
498 3797 7.696453 ACTTTGTAAAAACACGAGTTTGATGAG 59.304 33.333 11.77 8.06 46.79 2.90
572 3874 5.362556 TGATGCTTCTTTTTCCTCGAAAG 57.637 39.130 0.88 0.00 32.93 2.62
588 3891 1.145738 ACCCCTTGTCACTTTGATGCT 59.854 47.619 0.00 0.00 0.00 3.79
592 3895 1.142870 CCTCACCCCTTGTCACTTTGA 59.857 52.381 0.00 0.00 0.00 2.69
593 3896 1.609208 CCTCACCCCTTGTCACTTTG 58.391 55.000 0.00 0.00 0.00 2.77
625 3928 2.682494 TGCACTCCCCCTACGTCC 60.682 66.667 0.00 0.00 0.00 4.79
639 3942 2.078849 AACTGATTGATCGACGTGCA 57.921 45.000 0.00 0.00 0.00 4.57
658 3961 1.501170 AGCTAGCTGGAGGAGGACATA 59.499 52.381 18.57 0.00 0.00 2.29
711 4014 4.201871 CCACTAAAACGCACTTCTGTTTGA 60.202 41.667 0.00 0.00 38.26 2.69
749 4052 4.054085 CCACGAGGCATGCATAGG 57.946 61.111 21.36 11.66 0.00 2.57
779 4082 0.868406 CTTGACTTCTCCAACGTGCC 59.132 55.000 0.00 0.00 0.00 5.01
809 4112 2.290093 AGTACGCGTAGAGATTACTGCC 59.710 50.000 21.25 2.95 0.00 4.85
813 4116 8.442153 CTCCACGTAGTACGCGTAGAGATTAC 62.442 50.000 24.52 14.92 45.82 1.89
857 4160 5.123344 CGATCGGGAATTTTAGACCTTTTGT 59.877 40.000 7.38 0.00 0.00 2.83
920 4223 3.265791 CCAGAGCAAATATATCTCCGGC 58.734 50.000 0.00 0.00 0.00 6.13
973 4276 0.108615 GTATCTATGCGATGCCGGCT 60.109 55.000 29.70 13.55 36.06 5.52
986 4289 6.267492 TCCTTCTCATCCTCACTGTATCTA 57.733 41.667 0.00 0.00 0.00 1.98
988 4291 5.860941 TTCCTTCTCATCCTCACTGTATC 57.139 43.478 0.00 0.00 0.00 2.24
1047 4350 2.180017 CCGACGACGAACCCGAAT 59.820 61.111 9.28 0.00 42.66 3.34
1551 4878 0.940126 GCTACTCGACCATGGCATTG 59.060 55.000 13.04 0.00 0.00 2.82
1552 4879 0.530650 CGCTACTCGACCATGGCATT 60.531 55.000 13.04 0.00 41.67 3.56
1609 4939 3.866582 GGCGCCCATAGTCTGCCT 61.867 66.667 18.11 0.00 42.44 4.75
1755 5088 1.220206 CTCCGTGCCTTCATCAGCT 59.780 57.895 0.00 0.00 0.00 4.24
1756 5089 0.809241 CTCTCCGTGCCTTCATCAGC 60.809 60.000 0.00 0.00 0.00 4.26
1761 5094 4.069232 CGCCTCTCCGTGCCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
1785 5121 2.666812 GAAACCACGATCCCCGGT 59.333 61.111 0.00 0.00 43.93 5.28
1853 5193 1.689813 TGGTAACTGAAGACGCAAGGA 59.310 47.619 0.00 0.00 39.25 3.36
1873 5213 4.681978 GCCAGCAGGTTCGGACGT 62.682 66.667 0.00 0.00 37.19 4.34
1909 5254 2.235898 AGAGACCAGAGCCAAGAATGAC 59.764 50.000 0.00 0.00 0.00 3.06
1929 5274 2.294233 CCTTTGATGTGTGTTGGTCCAG 59.706 50.000 0.00 0.00 0.00 3.86
1940 5285 7.868922 TGAAATGAAACAAGATCCTTTGATGTG 59.131 33.333 1.96 0.00 0.00 3.21
2423 5806 8.031848 TCGAAACATTTGGGTACATAGTAAAC 57.968 34.615 0.00 0.00 0.00 2.01
2463 5847 6.710295 GGGTTCTATTTGAAATTGTTTGGCTT 59.290 34.615 0.00 0.00 36.30 4.35
2472 5856 7.657354 GCAGAAGTTTGGGTTCTATTTGAAATT 59.343 33.333 0.00 0.00 36.30 1.82
2635 6019 4.944619 TGTCAATACATTTGTTGGCCAA 57.055 36.364 16.05 16.05 27.69 4.52
2840 6224 8.919145 TGTTTACCACCACAAAGAGAAATAATT 58.081 29.630 0.00 0.00 0.00 1.40
2946 6345 6.253727 GTGATATGATAATTCGTCGTCCCATC 59.746 42.308 0.00 0.00 0.00 3.51
2964 6363 6.293698 TGTCATTTCTCCTGATGGTGATATG 58.706 40.000 9.60 9.60 41.89 1.78
3084 6505 0.674581 TTTCCCTCGCTGCATCTGTG 60.675 55.000 0.00 0.00 0.00 3.66
3143 6564 5.691896 ACAAAAGCCCTGTTTTCTACTAGT 58.308 37.500 0.00 0.00 0.00 2.57
3149 6570 3.096092 TGTGACAAAAGCCCTGTTTTCT 58.904 40.909 0.00 0.00 0.00 2.52
3150 6571 3.447742 CTGTGACAAAAGCCCTGTTTTC 58.552 45.455 0.00 0.00 0.00 2.29
3151 6572 2.168313 CCTGTGACAAAAGCCCTGTTTT 59.832 45.455 0.00 0.00 0.00 2.43
3152 6573 1.756538 CCTGTGACAAAAGCCCTGTTT 59.243 47.619 0.00 0.00 0.00 2.83
3153 6574 1.402787 CCTGTGACAAAAGCCCTGTT 58.597 50.000 0.00 0.00 0.00 3.16
3154 6575 0.468029 CCCTGTGACAAAAGCCCTGT 60.468 55.000 0.00 0.00 0.00 4.00
3155 6576 1.809567 GCCCTGTGACAAAAGCCCTG 61.810 60.000 0.00 0.00 0.00 4.45
3156 6577 1.531602 GCCCTGTGACAAAAGCCCT 60.532 57.895 0.00 0.00 0.00 5.19
3157 6578 1.809567 CTGCCCTGTGACAAAAGCCC 61.810 60.000 0.00 0.00 0.00 5.19
3158 6579 1.109323 ACTGCCCTGTGACAAAAGCC 61.109 55.000 0.00 0.00 0.00 4.35
3159 6580 1.604604 TACTGCCCTGTGACAAAAGC 58.395 50.000 0.00 0.00 0.00 3.51
3160 6581 3.820467 TGAATACTGCCCTGTGACAAAAG 59.180 43.478 0.00 0.00 0.00 2.27
3161 6582 3.568007 GTGAATACTGCCCTGTGACAAAA 59.432 43.478 0.00 0.00 0.00 2.44
3162 6583 3.146066 GTGAATACTGCCCTGTGACAAA 58.854 45.455 0.00 0.00 0.00 2.83
3163 6584 2.105649 TGTGAATACTGCCCTGTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
3164 6585 1.696884 TGTGAATACTGCCCTGTGACA 59.303 47.619 0.00 0.00 0.00 3.58
3165 6586 2.472695 TGTGAATACTGCCCTGTGAC 57.527 50.000 0.00 0.00 0.00 3.67
3166 6587 3.719268 AATGTGAATACTGCCCTGTGA 57.281 42.857 0.00 0.00 0.00 3.58
3167 6588 4.517285 ACTAATGTGAATACTGCCCTGTG 58.483 43.478 0.00 0.00 0.00 3.66
3168 6589 4.471386 AGACTAATGTGAATACTGCCCTGT 59.529 41.667 0.00 0.00 0.00 4.00
3169 6590 5.028549 AGACTAATGTGAATACTGCCCTG 57.971 43.478 0.00 0.00 0.00 4.45
3170 6591 4.202161 CGAGACTAATGTGAATACTGCCCT 60.202 45.833 0.00 0.00 0.00 5.19
3171 6592 4.051922 CGAGACTAATGTGAATACTGCCC 58.948 47.826 0.00 0.00 0.00 5.36
3172 6593 4.051922 CCGAGACTAATGTGAATACTGCC 58.948 47.826 0.00 0.00 0.00 4.85
3173 6594 4.683832 ACCGAGACTAATGTGAATACTGC 58.316 43.478 0.00 0.00 0.00 4.40
3174 6595 6.330278 TGAACCGAGACTAATGTGAATACTG 58.670 40.000 0.00 0.00 0.00 2.74
3175 6596 6.153000 ACTGAACCGAGACTAATGTGAATACT 59.847 38.462 0.00 0.00 0.00 2.12
3176 6597 6.331061 ACTGAACCGAGACTAATGTGAATAC 58.669 40.000 0.00 0.00 0.00 1.89
3177 6598 6.152154 TGACTGAACCGAGACTAATGTGAATA 59.848 38.462 0.00 0.00 0.00 1.75
3178 6599 5.047306 TGACTGAACCGAGACTAATGTGAAT 60.047 40.000 0.00 0.00 0.00 2.57
3179 6600 4.279922 TGACTGAACCGAGACTAATGTGAA 59.720 41.667 0.00 0.00 0.00 3.18
3180 6601 3.824443 TGACTGAACCGAGACTAATGTGA 59.176 43.478 0.00 0.00 0.00 3.58
3181 6602 3.921021 GTGACTGAACCGAGACTAATGTG 59.079 47.826 0.00 0.00 0.00 3.21
3182 6603 3.366070 CGTGACTGAACCGAGACTAATGT 60.366 47.826 0.00 0.00 0.00 2.71
3183 6604 3.119955 TCGTGACTGAACCGAGACTAATG 60.120 47.826 0.00 0.00 0.00 1.90
3184 6605 3.079578 TCGTGACTGAACCGAGACTAAT 58.920 45.455 0.00 0.00 0.00 1.73
3185 6606 2.497138 TCGTGACTGAACCGAGACTAA 58.503 47.619 0.00 0.00 0.00 2.24
3186 6607 2.174363 TCGTGACTGAACCGAGACTA 57.826 50.000 0.00 0.00 0.00 2.59
3187 6608 1.001597 GTTCGTGACTGAACCGAGACT 60.002 52.381 8.43 0.00 41.88 3.24
3188 6609 1.406447 GTTCGTGACTGAACCGAGAC 58.594 55.000 8.43 0.00 41.88 3.36
3189 6610 3.859650 GTTCGTGACTGAACCGAGA 57.140 52.632 8.43 0.00 41.88 4.04
3194 6615 0.942884 GTCCGGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
3195 6616 1.111116 AGTCCGGGTTCGTGACTGAA 61.111 55.000 0.00 0.00 41.64 3.02
3196 6617 0.250858 TAGTCCGGGTTCGTGACTGA 60.251 55.000 0.00 3.43 42.45 3.41
3197 6618 0.599558 TTAGTCCGGGTTCGTGACTG 59.400 55.000 0.00 0.00 42.45 3.51
3198 6619 1.203994 CATTAGTCCGGGTTCGTGACT 59.796 52.381 0.00 0.00 43.70 3.41
3199 6620 1.067354 ACATTAGTCCGGGTTCGTGAC 60.067 52.381 0.00 0.00 37.07 3.67
3200 6621 1.067425 CACATTAGTCCGGGTTCGTGA 60.067 52.381 0.00 0.00 33.95 4.35
3201 6622 1.067425 TCACATTAGTCCGGGTTCGTG 60.067 52.381 0.00 2.36 33.95 4.35
3202 6623 1.203994 CTCACATTAGTCCGGGTTCGT 59.796 52.381 0.00 0.00 33.95 3.85
3203 6624 1.922570 CTCACATTAGTCCGGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
3204 6625 1.066430 TGCTCACATTAGTCCGGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
3205 6626 0.981183 TGCTCACATTAGTCCGGGTT 59.019 50.000 0.00 0.00 0.00 4.11
3206 6627 1.204146 ATGCTCACATTAGTCCGGGT 58.796 50.000 0.00 0.00 30.07 5.28
3207 6628 2.213499 GAATGCTCACATTAGTCCGGG 58.787 52.381 0.00 0.00 46.59 5.73
3208 6629 1.860950 CGAATGCTCACATTAGTCCGG 59.139 52.381 0.00 0.00 46.59 5.14
3209 6630 2.540515 ACGAATGCTCACATTAGTCCG 58.459 47.619 0.00 0.00 45.50 4.79
3232 6653 2.202703 CCTTAGTCGCCCGAACCG 60.203 66.667 0.00 0.00 0.00 4.44
3233 6654 2.510918 GCCTTAGTCGCCCGAACC 60.511 66.667 0.00 0.00 0.00 3.62
3234 6655 0.743345 AATGCCTTAGTCGCCCGAAC 60.743 55.000 0.00 0.00 0.00 3.95
3235 6656 0.825410 TAATGCCTTAGTCGCCCGAA 59.175 50.000 0.00 0.00 0.00 4.30
3236 6657 0.387929 CTAATGCCTTAGTCGCCCGA 59.612 55.000 0.91 0.00 31.45 5.14
3237 6658 0.104304 ACTAATGCCTTAGTCGCCCG 59.896 55.000 8.44 0.00 43.22 6.13
3244 6665 2.169769 TGAACCGGGACTAATGCCTTAG 59.830 50.000 6.32 7.17 40.25 2.18
3245 6666 2.093341 GTGAACCGGGACTAATGCCTTA 60.093 50.000 6.32 0.00 33.05 2.69
3246 6667 0.988832 TGAACCGGGACTAATGCCTT 59.011 50.000 6.32 0.00 33.05 4.35
3247 6668 0.252197 GTGAACCGGGACTAATGCCT 59.748 55.000 6.32 0.00 33.05 4.75
3248 6669 0.746923 GGTGAACCGGGACTAATGCC 60.747 60.000 6.32 0.00 0.00 4.40
3249 6670 0.252197 AGGTGAACCGGGACTAATGC 59.748 55.000 6.32 0.00 42.08 3.56
3250 6671 2.024176 CAGGTGAACCGGGACTAATG 57.976 55.000 6.32 0.00 42.08 1.90
3259 6680 2.132089 TAAAGGGCCCAGGTGAACCG 62.132 60.000 27.56 0.00 42.08 4.44
3260 6681 0.323451 CTAAAGGGCCCAGGTGAACC 60.323 60.000 27.56 0.00 0.00 3.62
3261 6682 0.404426 ACTAAAGGGCCCAGGTGAAC 59.596 55.000 27.56 0.00 0.00 3.18
3262 6683 0.696501 GACTAAAGGGCCCAGGTGAA 59.303 55.000 27.56 1.43 0.00 3.18
3263 6684 1.205460 GGACTAAAGGGCCCAGGTGA 61.205 60.000 27.56 0.00 37.05 4.02
3264 6685 1.303282 GGACTAAAGGGCCCAGGTG 59.697 63.158 27.56 13.92 37.05 4.00
3265 6686 3.836617 GGACTAAAGGGCCCAGGT 58.163 61.111 27.56 16.46 37.05 4.00
3270 6691 1.378119 CAACCGGGACTAAAGGGCC 60.378 63.158 6.32 0.00 44.23 5.80
3271 6692 1.378119 CCAACCGGGACTAAAGGGC 60.378 63.158 6.32 0.00 40.01 5.19
3272 6693 0.322187 CACCAACCGGGACTAAAGGG 60.322 60.000 6.32 0.00 41.15 3.95
3273 6694 0.958876 GCACCAACCGGGACTAAAGG 60.959 60.000 6.32 0.00 41.15 3.11
3274 6695 0.958876 GGCACCAACCGGGACTAAAG 60.959 60.000 6.32 0.00 41.15 1.85
3275 6696 1.073548 GGCACCAACCGGGACTAAA 59.926 57.895 6.32 0.00 41.15 1.85
3276 6697 2.148052 TGGCACCAACCGGGACTAA 61.148 57.895 6.32 0.00 41.15 2.24
3277 6698 2.527123 TGGCACCAACCGGGACTA 60.527 61.111 6.32 0.00 41.15 2.59
3278 6699 4.265056 GTGGCACCAACCGGGACT 62.265 66.667 6.32 0.00 41.15 3.85
3281 6702 4.939368 TTCGTGGCACCAACCGGG 62.939 66.667 12.86 0.00 44.81 5.73
3282 6703 3.656045 GTTCGTGGCACCAACCGG 61.656 66.667 16.03 0.00 38.77 5.28
3283 6704 3.656045 GGTTCGTGGCACCAACCG 61.656 66.667 27.29 9.64 34.04 4.44
3284 6705 3.656045 CGGTTCGTGGCACCAACC 61.656 66.667 30.06 30.06 36.91 3.77
3285 6706 3.656045 CCGGTTCGTGGCACCAAC 61.656 66.667 18.22 18.22 33.36 3.77
3286 6707 4.939368 CCCGGTTCGTGGCACCAA 62.939 66.667 12.86 1.99 33.36 3.67
3289 6710 2.438951 TTAGTCCCGGTTCGTGGCAC 62.439 60.000 7.79 7.79 0.00 5.01
3290 6711 1.756408 TTTAGTCCCGGTTCGTGGCA 61.756 55.000 0.00 0.00 0.00 4.92
3291 6712 1.004679 TTTAGTCCCGGTTCGTGGC 60.005 57.895 0.00 0.00 0.00 5.01
3292 6713 0.390735 CCTTTAGTCCCGGTTCGTGG 60.391 60.000 0.00 0.00 0.00 4.94
3293 6714 0.390735 CCCTTTAGTCCCGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
3294 6715 0.833409 ACCCTTTAGTCCCGGTTCGT 60.833 55.000 0.00 0.00 0.00 3.85
3295 6716 0.390735 CACCCTTTAGTCCCGGTTCG 60.391 60.000 0.00 0.00 0.00 3.95
3296 6717 0.675837 GCACCCTTTAGTCCCGGTTC 60.676 60.000 0.00 0.00 0.00 3.62
3297 6718 1.377612 GCACCCTTTAGTCCCGGTT 59.622 57.895 0.00 0.00 0.00 4.44
3298 6719 2.951101 CGCACCCTTTAGTCCCGGT 61.951 63.158 0.00 0.00 0.00 5.28
3299 6720 1.968050 ATCGCACCCTTTAGTCCCGG 61.968 60.000 0.00 0.00 0.00 5.73
3300 6721 0.810031 CATCGCACCCTTTAGTCCCG 60.810 60.000 0.00 0.00 0.00 5.14
3301 6722 1.095807 GCATCGCACCCTTTAGTCCC 61.096 60.000 0.00 0.00 0.00 4.46
3302 6723 1.095807 GGCATCGCACCCTTTAGTCC 61.096 60.000 0.00 0.00 0.00 3.85
3303 6724 1.095807 GGGCATCGCACCCTTTAGTC 61.096 60.000 0.40 0.00 44.68 2.59
3304 6725 1.077716 GGGCATCGCACCCTTTAGT 60.078 57.895 0.40 0.00 44.68 2.24
3305 6726 3.827634 GGGCATCGCACCCTTTAG 58.172 61.111 0.40 0.00 44.68 1.85
3311 6732 1.226746 GTACTAATGGGCATCGCACC 58.773 55.000 0.00 0.00 0.00 5.01
3312 6733 1.226746 GGTACTAATGGGCATCGCAC 58.773 55.000 0.00 0.00 0.00 5.34
3313 6734 0.249699 CGGTACTAATGGGCATCGCA 60.250 55.000 0.00 0.00 0.00 5.10
3314 6735 0.949105 CCGGTACTAATGGGCATCGC 60.949 60.000 0.00 0.00 0.00 4.58
3315 6736 0.391597 ACCGGTACTAATGGGCATCG 59.608 55.000 4.49 0.00 0.00 3.84
3316 6737 2.218603 CAACCGGTACTAATGGGCATC 58.781 52.381 8.00 0.00 0.00 3.91
3317 6738 1.133915 CCAACCGGTACTAATGGGCAT 60.134 52.381 8.00 0.00 0.00 4.40
3318 6739 0.253610 CCAACCGGTACTAATGGGCA 59.746 55.000 8.00 0.00 0.00 5.36
3319 6740 0.253894 ACCAACCGGTACTAATGGGC 59.746 55.000 23.01 0.00 46.71 5.36
3320 6741 1.407712 CCACCAACCGGTACTAATGGG 60.408 57.143 23.01 13.27 46.94 4.00
3321 6742 2.015081 GCCACCAACCGGTACTAATGG 61.015 57.143 18.75 18.75 46.94 3.16
3322 6743 1.339247 TGCCACCAACCGGTACTAATG 60.339 52.381 8.00 0.73 46.94 1.90
3323 6744 0.985760 TGCCACCAACCGGTACTAAT 59.014 50.000 8.00 0.00 46.94 1.73
3324 6745 0.035176 GTGCCACCAACCGGTACTAA 59.965 55.000 8.00 0.00 46.94 2.24
3325 6746 1.672898 GTGCCACCAACCGGTACTA 59.327 57.895 8.00 0.00 46.94 1.82
3326 6747 2.428622 GTGCCACCAACCGGTACT 59.571 61.111 8.00 0.00 46.94 2.73
3327 6748 2.670592 GGTGCCACCAACCGGTAC 60.671 66.667 8.00 0.00 46.94 3.34
3336 6757 1.823169 TAGTCTCGGTTGGTGCCACC 61.823 60.000 7.01 7.01 39.22 4.61
3337 6758 0.034337 TTAGTCTCGGTTGGTGCCAC 59.966 55.000 0.00 0.00 0.00 5.01
3338 6759 0.759959 TTTAGTCTCGGTTGGTGCCA 59.240 50.000 0.00 0.00 0.00 4.92
3339 6760 1.439679 CTTTAGTCTCGGTTGGTGCC 58.560 55.000 0.00 0.00 0.00 5.01
3340 6761 1.270678 ACCTTTAGTCTCGGTTGGTGC 60.271 52.381 0.00 0.00 0.00 5.01
3341 6762 2.833631 ACCTTTAGTCTCGGTTGGTG 57.166 50.000 0.00 0.00 0.00 4.17
3342 6763 4.021632 GTCTAACCTTTAGTCTCGGTTGGT 60.022 45.833 10.02 0.00 40.94 3.67
3343 6764 4.492611 GTCTAACCTTTAGTCTCGGTTGG 58.507 47.826 10.02 7.95 40.94 3.77
3344 6765 4.492611 GGTCTAACCTTTAGTCTCGGTTG 58.507 47.826 10.02 3.32 40.94 3.77
3345 6766 3.192212 CGGTCTAACCTTTAGTCTCGGTT 59.808 47.826 0.00 0.00 43.10 4.44
3346 6767 2.751806 CGGTCTAACCTTTAGTCTCGGT 59.248 50.000 0.00 0.00 35.66 4.69
3347 6768 3.012518 TCGGTCTAACCTTTAGTCTCGG 58.987 50.000 0.00 0.00 35.66 4.63
3348 6769 4.691860 TTCGGTCTAACCTTTAGTCTCG 57.308 45.455 0.00 0.00 35.66 4.04
3349 6770 6.023357 AGTTTCGGTCTAACCTTTAGTCTC 57.977 41.667 0.00 0.00 35.66 3.36
3350 6771 6.416631 AAGTTTCGGTCTAACCTTTAGTCT 57.583 37.500 0.00 0.00 35.66 3.24
3351 6772 8.768957 AATAAGTTTCGGTCTAACCTTTAGTC 57.231 34.615 0.00 0.00 35.66 2.59
3352 6773 9.565090 AAAATAAGTTTCGGTCTAACCTTTAGT 57.435 29.630 0.00 0.00 35.66 2.24
3385 6806 9.835389 AAGAAAATGATGGAAATGTCAAAGAAA 57.165 25.926 0.00 0.00 0.00 2.52
3386 6807 9.835389 AAAGAAAATGATGGAAATGTCAAAGAA 57.165 25.926 0.00 0.00 0.00 2.52
3387 6808 9.835389 AAAAGAAAATGATGGAAATGTCAAAGA 57.165 25.926 0.00 0.00 0.00 2.52
3388 6809 9.872757 CAAAAGAAAATGATGGAAATGTCAAAG 57.127 29.630 0.00 0.00 0.00 2.77
3389 6810 9.393512 ACAAAAGAAAATGATGGAAATGTCAAA 57.606 25.926 0.00 0.00 0.00 2.69
3390 6811 8.961294 ACAAAAGAAAATGATGGAAATGTCAA 57.039 26.923 0.00 0.00 0.00 3.18
3391 6812 8.961294 AACAAAAGAAAATGATGGAAATGTCA 57.039 26.923 0.00 0.00 0.00 3.58
3416 6837 5.808030 CACCGCCTTTTCAGTTTTAGAAAAA 59.192 36.000 0.00 0.00 42.45 1.94
3417 6838 5.344884 CACCGCCTTTTCAGTTTTAGAAAA 58.655 37.500 0.00 0.00 41.27 2.29
3418 6839 4.202070 CCACCGCCTTTTCAGTTTTAGAAA 60.202 41.667 0.00 0.00 33.48 2.52
3419 6840 3.316868 CCACCGCCTTTTCAGTTTTAGAA 59.683 43.478 0.00 0.00 0.00 2.10
3420 6841 2.882137 CCACCGCCTTTTCAGTTTTAGA 59.118 45.455 0.00 0.00 0.00 2.10
3421 6842 2.030274 CCCACCGCCTTTTCAGTTTTAG 60.030 50.000 0.00 0.00 0.00 1.85
3422 6843 1.957877 CCCACCGCCTTTTCAGTTTTA 59.042 47.619 0.00 0.00 0.00 1.52
3423 6844 0.750249 CCCACCGCCTTTTCAGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
3424 6845 1.112916 CCCCACCGCCTTTTCAGTTT 61.113 55.000 0.00 0.00 0.00 2.66
3425 6846 1.530655 CCCCACCGCCTTTTCAGTT 60.531 57.895 0.00 0.00 0.00 3.16
3426 6847 2.115266 CCCCACCGCCTTTTCAGT 59.885 61.111 0.00 0.00 0.00 3.41
3427 6848 1.675641 CTCCCCACCGCCTTTTCAG 60.676 63.158 0.00 0.00 0.00 3.02
3428 6849 2.434331 CTCCCCACCGCCTTTTCA 59.566 61.111 0.00 0.00 0.00 2.69
3429 6850 2.361230 CCTCCCCACCGCCTTTTC 60.361 66.667 0.00 0.00 0.00 2.29
3430 6851 3.979497 CCCTCCCCACCGCCTTTT 61.979 66.667 0.00 0.00 0.00 2.27
3447 6868 3.096852 CCCATTTTCAAACTCTACCCCC 58.903 50.000 0.00 0.00 0.00 5.40
3448 6869 3.762288 GTCCCATTTTCAAACTCTACCCC 59.238 47.826 0.00 0.00 0.00 4.95
3449 6870 3.762288 GGTCCCATTTTCAAACTCTACCC 59.238 47.826 0.00 0.00 0.00 3.69
3450 6871 4.663334 AGGTCCCATTTTCAAACTCTACC 58.337 43.478 0.00 0.00 0.00 3.18
3451 6872 6.650427 AAAGGTCCCATTTTCAAACTCTAC 57.350 37.500 0.00 0.00 0.00 2.59
3452 6873 7.523415 ACTAAAGGTCCCATTTTCAAACTCTA 58.477 34.615 0.00 0.00 0.00 2.43
3453 6874 6.373759 ACTAAAGGTCCCATTTTCAAACTCT 58.626 36.000 0.00 0.00 0.00 3.24
3454 6875 6.650427 ACTAAAGGTCCCATTTTCAAACTC 57.350 37.500 0.00 0.00 0.00 3.01
3455 6876 6.492429 GGTACTAAAGGTCCCATTTTCAAACT 59.508 38.462 0.00 0.00 0.00 2.66
3456 6877 6.569035 CGGTACTAAAGGTCCCATTTTCAAAC 60.569 42.308 0.00 0.00 0.00 2.93
3457 6878 5.474189 CGGTACTAAAGGTCCCATTTTCAAA 59.526 40.000 0.00 0.00 0.00 2.69
3458 6879 5.005094 CGGTACTAAAGGTCCCATTTTCAA 58.995 41.667 0.00 0.00 0.00 2.69
3459 6880 4.566070 CCGGTACTAAAGGTCCCATTTTCA 60.566 45.833 0.00 0.00 0.00 2.69
3460 6881 3.943381 CCGGTACTAAAGGTCCCATTTTC 59.057 47.826 0.00 0.00 0.00 2.29
3461 6882 3.331591 ACCGGTACTAAAGGTCCCATTTT 59.668 43.478 4.49 0.00 31.69 1.82
3462 6883 2.914941 ACCGGTACTAAAGGTCCCATTT 59.085 45.455 4.49 0.00 31.69 2.32
3463 6884 2.554563 ACCGGTACTAAAGGTCCCATT 58.445 47.619 4.49 0.00 31.69 3.16
3464 6885 2.259014 ACCGGTACTAAAGGTCCCAT 57.741 50.000 4.49 0.00 31.69 4.00
3465 6886 1.901833 GAACCGGTACTAAAGGTCCCA 59.098 52.381 8.00 0.00 37.26 4.37
3466 6887 1.134995 CGAACCGGTACTAAAGGTCCC 60.135 57.143 8.00 0.00 37.26 4.46
3467 6888 2.284263 CGAACCGGTACTAAAGGTCC 57.716 55.000 8.00 0.00 37.26 4.46
3801 7223 9.612066 TTCCAGAAAGATTTTGCAAATAAAGTT 57.388 25.926 13.65 4.17 0.00 2.66
3820 7242 5.815233 TGCCCATTTTACAAATTCCAGAA 57.185 34.783 0.00 0.00 0.00 3.02
4238 7700 7.451731 AGATGTCAATCCTATTAACCCTCAA 57.548 36.000 0.00 0.00 32.77 3.02
4301 7763 1.200519 CCGGGTTGTATTCTCCCTCA 58.799 55.000 0.00 0.00 39.10 3.86
4313 7775 0.515564 CACGCTTAACTTCCGGGTTG 59.484 55.000 0.00 0.00 0.00 3.77
4337 7800 4.748798 CCTCCCACTCCCCCAGCT 62.749 72.222 0.00 0.00 0.00 4.24
4364 7827 4.941263 CCAAATCATCTAACTTCCCGAACA 59.059 41.667 0.00 0.00 0.00 3.18
4541 8017 1.808343 GTCCCGGTTGATAACACCAAC 59.192 52.381 0.00 0.00 42.18 3.77
4542 8018 1.700739 AGTCCCGGTTGATAACACCAA 59.299 47.619 0.00 0.00 0.00 3.67
4543 8019 1.354101 AGTCCCGGTTGATAACACCA 58.646 50.000 0.00 0.00 0.00 4.17
4551 8027 2.500098 CTCCATCTTTAGTCCCGGTTGA 59.500 50.000 0.00 0.00 0.00 3.18
4680 8156 0.033781 TTGTCCCGGTTGGTAAGACG 59.966 55.000 0.00 0.00 34.77 4.18
4682 8158 2.853705 CTTTTGTCCCGGTTGGTAAGA 58.146 47.619 0.00 0.00 34.77 2.10
4706 8183 9.715121 TTCAGGTCGTTACATTAGTAGAAAAAT 57.285 29.630 0.00 0.00 0.00 1.82
5027 8506 3.823873 ACAATGAAAGAATACACGGCCAA 59.176 39.130 2.24 0.00 0.00 4.52
5071 8550 7.121907 TCCGATAATGGTCATTTCATTCAAACA 59.878 33.333 1.28 0.00 36.40 2.83
5179 8659 0.107993 ACAGACGCACCTGGATCATG 60.108 55.000 0.00 0.00 38.44 3.07
5343 8836 4.782019 TCCAAACGCTGCTCAAATAATT 57.218 36.364 0.00 0.00 0.00 1.40
5436 8945 2.788407 GCGCATCTACGATACCGATCTC 60.788 54.545 0.30 0.00 39.50 2.75
5567 9076 1.134371 GGGGGAGAGCTGTTATGTGAC 60.134 57.143 0.00 0.00 0.00 3.67
5572 9081 2.781667 AGATTGGGGGAGAGCTGTTAT 58.218 47.619 0.00 0.00 0.00 1.89
5666 9195 8.613060 ATGACTAGTATTCATTGCTAACATGG 57.387 34.615 0.00 0.00 28.83 3.66
5770 9299 5.009110 GGAGTATAAAGCATGGAAAAGCCTC 59.991 44.000 0.00 0.00 37.63 4.70
5793 9322 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5794 9323 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5795 9324 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5796 9325 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
5869 9398 9.081997 CGGAGCAGAATAAATGAATCTATACTC 57.918 37.037 0.00 0.00 0.00 2.59
5870 9399 8.589338 ACGGAGCAGAATAAATGAATCTATACT 58.411 33.333 0.00 0.00 0.00 2.12
5871 9400 8.764524 ACGGAGCAGAATAAATGAATCTATAC 57.235 34.615 0.00 0.00 0.00 1.47
5873 9402 9.376075 CATACGGAGCAGAATAAATGAATCTAT 57.624 33.333 0.00 0.00 0.00 1.98
5874 9403 8.367911 ACATACGGAGCAGAATAAATGAATCTA 58.632 33.333 0.00 0.00 0.00 1.98
5875 9404 7.220030 ACATACGGAGCAGAATAAATGAATCT 58.780 34.615 0.00 0.00 0.00 2.40
5876 9405 7.426929 ACATACGGAGCAGAATAAATGAATC 57.573 36.000 0.00 0.00 0.00 2.52
5877 9406 8.150945 ACTACATACGGAGCAGAATAAATGAAT 58.849 33.333 0.00 0.00 0.00 2.57
5878 9407 7.497595 ACTACATACGGAGCAGAATAAATGAA 58.502 34.615 0.00 0.00 0.00 2.57
5879 9408 7.050970 ACTACATACGGAGCAGAATAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
5880 9409 6.923508 TGACTACATACGGAGCAGAATAAATG 59.076 38.462 0.00 0.00 0.00 2.32
5881 9410 6.924060 GTGACTACATACGGAGCAGAATAAAT 59.076 38.462 0.00 0.00 0.00 1.40
5882 9411 6.096423 AGTGACTACATACGGAGCAGAATAAA 59.904 38.462 0.00 0.00 0.00 1.40
5883 9412 5.593095 AGTGACTACATACGGAGCAGAATAA 59.407 40.000 0.00 0.00 0.00 1.40
5884 9413 5.131067 AGTGACTACATACGGAGCAGAATA 58.869 41.667 0.00 0.00 0.00 1.75
5885 9414 3.954904 AGTGACTACATACGGAGCAGAAT 59.045 43.478 0.00 0.00 0.00 2.40
5886 9415 3.353557 AGTGACTACATACGGAGCAGAA 58.646 45.455 0.00 0.00 0.00 3.02
5887 9416 3.000684 AGTGACTACATACGGAGCAGA 57.999 47.619 0.00 0.00 0.00 4.26
5888 9417 3.119459 ACAAGTGACTACATACGGAGCAG 60.119 47.826 0.00 0.00 0.00 4.24
5889 9418 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5890 9419 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5891 9420 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5892 9421 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5893 9422 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
5894 9423 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
5895 9424 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
5896 9425 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
5897 9426 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
5898 9427 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
5899 9428 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
5900 9429 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
5901 9430 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
5902 9431 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
5903 9432 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
5904 9433 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
5905 9434 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
5906 9435 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
5907 9436 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
5908 9437 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
5909 9438 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
5910 9439 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
5911 9440 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
5913 9442 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
5914 9443 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
5915 9444 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
5916 9445 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
5917 9446 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
5918 9447 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
5919 9448 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
5920 9449 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
5921 9450 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
5922 9451 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
5923 9452 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
5924 9453 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
5925 9454 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
5926 9455 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
5927 9456 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
5928 9457 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
5929 9458 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
5930 9459 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
5931 9460 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
5932 9461 8.591072 CATTAATACTCCCTCCGTTCCTAAATA 58.409 37.037 0.00 0.00 0.00 1.40
5933 9462 7.291651 TCATTAATACTCCCTCCGTTCCTAAAT 59.708 37.037 0.00 0.00 0.00 1.40
5934 9463 6.612456 TCATTAATACTCCCTCCGTTCCTAAA 59.388 38.462 0.00 0.00 0.00 1.85
5935 9464 6.041296 GTCATTAATACTCCCTCCGTTCCTAA 59.959 42.308 0.00 0.00 0.00 2.69
5936 9465 5.537674 GTCATTAATACTCCCTCCGTTCCTA 59.462 44.000 0.00 0.00 0.00 2.94
5937 9466 4.344390 GTCATTAATACTCCCTCCGTTCCT 59.656 45.833 0.00 0.00 0.00 3.36
5938 9467 4.344390 AGTCATTAATACTCCCTCCGTTCC 59.656 45.833 0.00 0.00 0.00 3.62
5939 9468 5.290386 CAGTCATTAATACTCCCTCCGTTC 58.710 45.833 0.00 0.00 0.00 3.95
5940 9469 4.101119 CCAGTCATTAATACTCCCTCCGTT 59.899 45.833 0.00 0.00 0.00 4.44
5941 9470 3.641906 CCAGTCATTAATACTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
5942 9471 3.895656 TCCAGTCATTAATACTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
5943 9472 7.741554 ATATCCAGTCATTAATACTCCCTCC 57.258 40.000 0.00 0.00 0.00 4.30
6002 9531 3.181475 ACCTATCAGCACCAATAGACACG 60.181 47.826 0.00 0.00 0.00 4.49
6009 9538 3.493350 CGCTCTTACCTATCAGCACCAAT 60.493 47.826 0.00 0.00 0.00 3.16
6013 9542 1.492720 GCGCTCTTACCTATCAGCAC 58.507 55.000 0.00 0.00 0.00 4.40
6128 9658 7.470935 TTGTGTATACTCTGCTAAGTAACCA 57.529 36.000 4.17 1.64 35.47 3.67
6292 10909 4.990426 CCGGTTGCTCAAAAATGAAGAAAT 59.010 37.500 0.00 0.00 0.00 2.17
6324 10941 4.084223 TGAATAAACGACGAAAGAAGGTGC 60.084 41.667 0.00 0.00 0.00 5.01
6325 10942 5.050634 TGTGAATAAACGACGAAAGAAGGTG 60.051 40.000 0.00 0.00 0.00 4.00
6332 10949 7.367159 ACCAATATGTGAATAAACGACGAAA 57.633 32.000 0.00 0.00 0.00 3.46
6521 11144 4.021894 CCTCATAACCTATCCCTCGTCTTG 60.022 50.000 0.00 0.00 0.00 3.02
6736 11919 8.596380 GTCATTTTGGTTGTTTAAATCGAAACA 58.404 29.630 0.00 0.00 45.29 2.83
6755 11938 5.850557 TGTCAAGACAATGTGGTCATTTT 57.149 34.783 0.00 0.00 41.66 1.82
6810 11993 8.934507 TTGTTTTAAATTTCGGTTGTCAAGAT 57.065 26.923 0.00 0.00 0.00 2.40
6882 12065 6.430007 ACTATGGCAAGGATGAGAAAGAATT 58.570 36.000 0.00 0.00 0.00 2.17
6969 12152 2.320781 CATCTTCCCCGACTCTGGTAT 58.679 52.381 0.00 0.00 0.00 2.73
6970 12153 1.776662 CATCTTCCCCGACTCTGGTA 58.223 55.000 0.00 0.00 0.00 3.25
6971 12154 1.617947 GCATCTTCCCCGACTCTGGT 61.618 60.000 0.00 0.00 0.00 4.00
7041 12224 3.267860 CGATGAGGAGCAAGGCGC 61.268 66.667 0.00 0.00 42.91 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.