Multiple sequence alignment - TraesCS7B01G475000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G475000 chr7B 100.000 4579 0 0 1 4579 731037976 731033398 0.000000e+00 8456.0
1 TraesCS7B01G475000 chr7B 79.701 1473 200 61 1329 2752 730808943 730810365 0.000000e+00 972.0
2 TraesCS7B01G475000 chr7B 86.024 415 44 9 2813 3223 731042792 731042388 2.530000e-117 433.0
3 TraesCS7B01G475000 chr7B 89.744 156 16 0 1961 2116 731045694 731045539 2.790000e-47 200.0
4 TraesCS7B01G475000 chr7B 81.223 229 31 6 2813 3041 730810371 730810587 1.690000e-39 174.0
5 TraesCS7B01G475000 chr7B 86.331 139 16 1 1518 1656 731046170 731046035 1.030000e-31 148.0
6 TraesCS7B01G475000 chr7B 98.630 73 1 0 2819 2891 44236716 44236788 3.720000e-26 130.0
7 TraesCS7B01G475000 chr7B 87.912 91 8 3 1554 1643 44235622 44235710 2.250000e-18 104.0
8 TraesCS7B01G475000 chr7D 91.807 1782 97 24 1942 3682 629117220 629118993 0.000000e+00 2436.0
9 TraesCS7B01G475000 chr7D 90.676 1523 98 13 358 1874 629115691 629117175 0.000000e+00 1986.0
10 TraesCS7B01G475000 chr7D 85.009 567 56 13 2208 2752 628223632 628223073 2.410000e-152 549.0
11 TraesCS7B01G475000 chr7D 82.871 613 74 24 1966 2556 628219643 628219040 5.250000e-144 521.0
12 TraesCS7B01G475000 chr7D 85.203 419 44 10 2813 3223 629110096 629110504 9.170000e-112 414.0
13 TraesCS7B01G475000 chr7D 86.555 357 33 7 3674 4027 629120071 629120415 3.340000e-101 379.0
14 TraesCS7B01G475000 chr7D 84.419 353 35 14 1 336 594768902 594768553 3.420000e-86 329.0
15 TraesCS7B01G475000 chr7D 79.084 502 82 19 4040 4523 69130814 69130318 1.590000e-84 324.0
16 TraesCS7B01G475000 chr7D 79.076 368 67 8 1752 2116 628224228 628223868 1.270000e-60 244.0
17 TraesCS7B01G475000 chr7D 89.103 156 17 0 1961 2116 629108776 629108931 1.300000e-45 195.0
18 TraesCS7B01G475000 chr7D 73.427 572 119 25 1983 2534 92140214 92140772 2.810000e-42 183.0
19 TraesCS7B01G475000 chr7D 90.244 123 9 1 1515 1637 629108296 629108415 1.710000e-34 158.0
20 TraesCS7B01G475000 chr7D 100.000 73 0 0 2819 2891 92217935 92218007 7.990000e-28 135.0
21 TraesCS7B01G475000 chr7D 85.950 121 17 0 1119 1239 628224855 628224735 3.720000e-26 130.0
22 TraesCS7B01G475000 chr7D 97.260 73 2 0 2819 2891 92140981 92141053 1.730000e-24 124.0
23 TraesCS7B01G475000 chr7D 87.156 109 13 1 1771 1879 628219925 628219818 6.220000e-24 122.0
24 TraesCS7B01G475000 chr7D 83.200 125 21 0 1983 2107 92215053 92215177 1.040000e-21 115.0
25 TraesCS7B01G475000 chr7D 87.778 90 10 1 1554 1643 92139863 92139951 2.250000e-18 104.0
26 TraesCS7B01G475000 chr7D 88.235 68 8 0 1175 1242 628220533 628220466 1.060000e-11 82.4
27 TraesCS7B01G475000 chr7A 90.155 1422 97 19 1942 3354 725137029 725135642 0.000000e+00 1810.0
28 TraesCS7B01G475000 chr7A 93.743 959 52 6 918 1874 725138026 725137074 0.000000e+00 1432.0
29 TraesCS7B01G475000 chr7A 93.185 675 31 8 3385 4051 725135534 725134867 0.000000e+00 977.0
30 TraesCS7B01G475000 chr7A 92.764 539 39 0 4041 4579 725133965 725133427 0.000000e+00 780.0
31 TraesCS7B01G475000 chr7A 89.568 556 45 7 337 887 725138568 725138021 0.000000e+00 693.0
32 TraesCS7B01G475000 chr7A 85.037 675 80 16 1938 2597 724919912 724920580 0.000000e+00 667.0
33 TraesCS7B01G475000 chr7A 83.250 603 69 22 1973 2556 724951351 724951940 4.060000e-145 525.0
34 TraesCS7B01G475000 chr7A 86.364 396 47 4 2168 2556 724947508 724947903 4.230000e-115 425.0
35 TraesCS7B01G475000 chr7A 79.286 420 59 20 2813 3227 725151711 725151315 7.550000e-68 268.0
36 TraesCS7B01G475000 chr7A 76.350 537 86 19 1340 1872 724946646 724947145 2.740000e-62 250.0
37 TraesCS7B01G475000 chr7A 75.768 586 92 29 1296 1860 724950699 724951255 2.740000e-62 250.0
38 TraesCS7B01G475000 chr7A 89.630 135 14 0 1982 2116 724947192 724947326 6.090000e-39 172.0
39 TraesCS7B01G475000 chr7A 79.730 222 24 13 3 215 25059766 25059975 1.720000e-29 141.0
40 TraesCS7B01G475000 chr7A 85.606 132 18 1 1111 1242 724950484 724950614 2.220000e-28 137.0
41 TraesCS7B01G475000 chr7A 91.176 102 5 3 2792 2891 94291323 94291422 7.990000e-28 135.0
42 TraesCS7B01G475000 chr7A 87.288 118 15 0 1119 1236 724946345 724946462 7.990000e-28 135.0
43 TraesCS7B01G475000 chr7A 98.630 73 1 0 2819 2891 94321265 94321337 3.720000e-26 130.0
44 TraesCS7B01G475000 chr7A 98.630 73 1 0 2819 2891 94323901 94323973 3.720000e-26 130.0
45 TraesCS7B01G475000 chr7A 90.541 74 7 0 1570 1643 94290204 94290277 1.050000e-16 99.0
46 TraesCS7B01G475000 chr7A 86.667 90 11 1 1554 1643 94311073 94311161 1.050000e-16 99.0
47 TraesCS7B01G475000 chr1D 82.051 507 77 12 4022 4521 430999101 430998602 1.970000e-113 420.0
48 TraesCS7B01G475000 chr2B 79.235 549 95 16 4026 4562 707618532 707617991 9.360000e-97 364.0
49 TraesCS7B01G475000 chr2B 91.566 166 12 2 173 336 801186062 801186227 1.280000e-55 228.0
50 TraesCS7B01G475000 chr2B 77.746 355 57 15 1 340 104928315 104927968 1.000000e-46 198.0
51 TraesCS7B01G475000 chr4B 80.691 492 71 18 4081 4553 368111260 368111746 1.210000e-95 361.0
52 TraesCS7B01G475000 chr4B 79.614 466 78 13 4032 4486 585704521 585704980 7.390000e-83 318.0
53 TraesCS7B01G475000 chr1A 79.029 577 82 30 4026 4577 589107388 589106826 4.360000e-95 359.0
54 TraesCS7B01G475000 chr1A 78.857 525 71 28 4026 4520 511613418 511613932 7.390000e-83 318.0
55 TraesCS7B01G475000 chr6D 85.044 341 36 8 1 336 471553237 471553567 2.640000e-87 333.0
56 TraesCS7B01G475000 chr5D 84.302 344 40 7 1 336 548252310 548252647 1.590000e-84 324.0
57 TraesCS7B01G475000 chr5D 82.470 251 26 12 1 243 6522919 6523159 2.160000e-48 204.0
58 TraesCS7B01G475000 chr6B 78.854 506 81 20 4031 4520 702663088 702663583 7.390000e-83 318.0
59 TraesCS7B01G475000 chr6B 88.660 194 19 1 147 337 544847999 544848192 2.750000e-57 233.0
60 TraesCS7B01G475000 chr2A 82.906 351 35 12 1 343 737803677 737804010 4.480000e-75 292.0
61 TraesCS7B01G475000 chr1B 86.528 193 22 2 147 336 565922063 565921872 4.640000e-50 209.0
62 TraesCS7B01G475000 chr5A 78.438 320 55 9 1 310 617624867 617625182 3.610000e-46 196.0
63 TraesCS7B01G475000 chr3B 80.201 298 29 17 2 272 4269147 4268853 3.610000e-46 196.0
64 TraesCS7B01G475000 chr3B 87.681 138 8 5 2 134 5141439 5141306 7.930000e-33 152.0
65 TraesCS7B01G475000 chr3A 77.374 358 56 19 1 337 49232718 49232365 6.050000e-44 189.0
66 TraesCS7B01G475000 chr4D 84.906 159 21 2 2251 2408 498127111 498126955 1.710000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G475000 chr7B 731033398 731037976 4578 True 8456.000000 8456 100.000000 1 4579 1 chr7B.!!$R1 4578
1 TraesCS7B01G475000 chr7B 730808943 730810587 1644 False 573.000000 972 80.462000 1329 3041 2 chr7B.!!$F2 1712
2 TraesCS7B01G475000 chr7B 731042388 731046170 3782 True 260.333333 433 87.366333 1518 3223 3 chr7B.!!$R2 1705
3 TraesCS7B01G475000 chr7D 629115691 629120415 4724 False 1600.333333 2436 89.679333 358 4027 3 chr7D.!!$F4 3669
4 TraesCS7B01G475000 chr7D 628219040 628224855 5815 True 274.733333 549 84.716167 1119 2752 6 chr7D.!!$R3 1633
5 TraesCS7B01G475000 chr7D 629108296 629110504 2208 False 255.666667 414 88.183333 1515 3223 3 chr7D.!!$F3 1708
6 TraesCS7B01G475000 chr7A 725133427 725138568 5141 True 1138.400000 1810 91.883000 337 4579 5 chr7A.!!$R2 4242
7 TraesCS7B01G475000 chr7A 724919912 724920580 668 False 667.000000 667 85.037000 1938 2597 1 chr7A.!!$F3 659
8 TraesCS7B01G475000 chr7A 724946345 724951940 5595 False 270.571429 525 83.465143 1111 2556 7 chr7A.!!$F6 1445
9 TraesCS7B01G475000 chr2B 707617991 707618532 541 True 364.000000 364 79.235000 4026 4562 1 chr2B.!!$R2 536
10 TraesCS7B01G475000 chr1A 589106826 589107388 562 True 359.000000 359 79.029000 4026 4577 1 chr1A.!!$R1 551
11 TraesCS7B01G475000 chr1A 511613418 511613932 514 False 318.000000 318 78.857000 4026 4520 1 chr1A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.034896 AGTGCCAGTTACAGAACCGG 59.965 55.0 0.0 0.0 36.35 5.28 F
1498 1600 0.108585 TGCCTGGTCTCTTGGTCAAC 59.891 55.0 0.0 0.0 0.00 3.18 F
1714 1834 0.108585 TGCACTTCACCCTTCACTCC 59.891 55.0 0.0 0.0 0.00 3.85 F
2726 4983 0.596083 CGGACGCATTTTGGTTTGCA 60.596 50.0 0.0 0.0 38.80 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1646 0.176910 CTCTCCGCCCCTTCTTCTTC 59.823 60.0 0.00 0.0 0.00 2.87 R
3119 5666 0.404040 TTCGGGATCCTGCCAAGTTT 59.596 50.0 16.48 0.0 0.00 2.66 R
3235 5782 1.931906 TGAGTGATCGAGCATGAAGC 58.068 50.0 6.66 0.0 46.19 3.86 R
4247 9958 0.472471 TGAGAAGACGGCAAAAGGGT 59.528 50.0 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.241067 CGGGAAGTTAGACGATTTGGA 57.759 47.619 0.00 0.00 0.00 3.53
21 22 3.592059 CGGGAAGTTAGACGATTTGGAA 58.408 45.455 0.00 0.00 0.00 3.53
22 23 4.189231 CGGGAAGTTAGACGATTTGGAAT 58.811 43.478 0.00 0.00 0.00 3.01
23 24 4.034048 CGGGAAGTTAGACGATTTGGAATG 59.966 45.833 0.00 0.00 0.00 2.67
24 25 5.183228 GGGAAGTTAGACGATTTGGAATGA 58.817 41.667 0.00 0.00 0.00 2.57
25 26 5.294552 GGGAAGTTAGACGATTTGGAATGAG 59.705 44.000 0.00 0.00 0.00 2.90
26 27 5.875359 GGAAGTTAGACGATTTGGAATGAGT 59.125 40.000 0.00 0.00 0.00 3.41
27 28 6.183360 GGAAGTTAGACGATTTGGAATGAGTG 60.183 42.308 0.00 0.00 0.00 3.51
28 29 4.631813 AGTTAGACGATTTGGAATGAGTGC 59.368 41.667 0.00 0.00 0.00 4.40
29 30 3.340814 AGACGATTTGGAATGAGTGCT 57.659 42.857 0.00 0.00 0.00 4.40
30 31 3.265791 AGACGATTTGGAATGAGTGCTC 58.734 45.455 0.00 0.00 0.00 4.26
31 32 2.352960 GACGATTTGGAATGAGTGCTCC 59.647 50.000 0.00 0.00 0.00 4.70
32 33 2.290260 ACGATTTGGAATGAGTGCTCCA 60.290 45.455 0.00 0.00 40.03 3.86
33 34 2.096496 CGATTTGGAATGAGTGCTCCAC 59.904 50.000 0.00 0.00 41.49 4.02
34 35 2.655090 TTTGGAATGAGTGCTCCACA 57.345 45.000 0.00 0.00 41.49 4.17
46 47 3.995526 CTCCACACTTGAGCACTGA 57.004 52.632 0.00 0.00 0.00 3.41
47 48 2.469274 CTCCACACTTGAGCACTGAT 57.531 50.000 0.00 0.00 0.00 2.90
48 49 2.344950 CTCCACACTTGAGCACTGATC 58.655 52.381 0.00 0.00 0.00 2.92
49 50 1.693606 TCCACACTTGAGCACTGATCA 59.306 47.619 0.00 0.00 0.00 2.92
50 51 2.074576 CCACACTTGAGCACTGATCAG 58.925 52.381 21.37 21.37 0.00 2.90
51 52 2.074576 CACACTTGAGCACTGATCAGG 58.925 52.381 26.08 15.76 31.48 3.86
52 53 1.002888 ACACTTGAGCACTGATCAGGG 59.997 52.381 26.08 23.79 29.42 4.45
53 54 0.617413 ACTTGAGCACTGATCAGGGG 59.383 55.000 26.06 18.02 29.42 4.79
54 55 0.617413 CTTGAGCACTGATCAGGGGT 59.383 55.000 29.04 29.04 46.56 4.95
55 56 0.325933 TTGAGCACTGATCAGGGGTG 59.674 55.000 33.19 20.13 43.50 4.61
56 57 0.545071 TGAGCACTGATCAGGGGTGA 60.545 55.000 33.19 23.38 43.50 4.02
57 58 0.177604 GAGCACTGATCAGGGGTGAG 59.822 60.000 33.19 12.68 43.50 3.51
58 59 0.252421 AGCACTGATCAGGGGTGAGA 60.252 55.000 28.18 0.00 41.64 3.27
59 60 0.835941 GCACTGATCAGGGGTGAGAT 59.164 55.000 26.06 0.00 33.32 2.75
60 61 1.211457 GCACTGATCAGGGGTGAGATT 59.789 52.381 26.06 0.00 33.32 2.40
61 62 2.435805 GCACTGATCAGGGGTGAGATTA 59.564 50.000 26.06 0.00 33.32 1.75
62 63 3.118261 GCACTGATCAGGGGTGAGATTAA 60.118 47.826 26.06 0.00 33.32 1.40
63 64 4.445448 GCACTGATCAGGGGTGAGATTAAT 60.445 45.833 26.06 0.00 33.32 1.40
64 65 5.688807 CACTGATCAGGGGTGAGATTAATT 58.311 41.667 26.08 0.00 33.32 1.40
65 66 5.762218 CACTGATCAGGGGTGAGATTAATTC 59.238 44.000 26.08 0.00 33.32 2.17
66 67 4.960938 TGATCAGGGGTGAGATTAATTCG 58.039 43.478 0.00 0.00 0.00 3.34
67 68 4.408921 TGATCAGGGGTGAGATTAATTCGT 59.591 41.667 0.00 0.00 0.00 3.85
68 69 4.402056 TCAGGGGTGAGATTAATTCGTC 57.598 45.455 0.00 0.00 0.00 4.20
69 70 3.772572 TCAGGGGTGAGATTAATTCGTCA 59.227 43.478 0.00 0.00 0.00 4.35
70 71 4.224147 TCAGGGGTGAGATTAATTCGTCAA 59.776 41.667 0.00 0.00 0.00 3.18
71 72 4.941263 CAGGGGTGAGATTAATTCGTCAAA 59.059 41.667 0.00 0.00 0.00 2.69
72 73 5.590259 CAGGGGTGAGATTAATTCGTCAAAT 59.410 40.000 0.00 0.00 0.00 2.32
73 74 6.765989 CAGGGGTGAGATTAATTCGTCAAATA 59.234 38.462 0.00 0.00 0.00 1.40
74 75 7.282224 CAGGGGTGAGATTAATTCGTCAAATAA 59.718 37.037 0.00 0.00 0.00 1.40
75 76 7.998964 AGGGGTGAGATTAATTCGTCAAATAAT 59.001 33.333 0.00 0.00 0.00 1.28
76 77 8.630037 GGGGTGAGATTAATTCGTCAAATAATT 58.370 33.333 0.00 0.00 0.00 1.40
77 78 9.665264 GGGTGAGATTAATTCGTCAAATAATTC 57.335 33.333 0.00 0.00 0.00 2.17
158 159 4.787381 AAAAATGCTTGTTAACAACCGC 57.213 36.364 17.01 18.83 0.00 5.68
159 160 2.044888 AATGCTTGTTAACAACCGCG 57.955 45.000 17.01 8.73 31.92 6.46
160 161 1.231221 ATGCTTGTTAACAACCGCGA 58.769 45.000 17.01 10.80 31.92 5.87
161 162 0.584396 TGCTTGTTAACAACCGCGAG 59.416 50.000 17.01 7.58 31.92 5.03
162 163 0.584876 GCTTGTTAACAACCGCGAGT 59.415 50.000 17.01 0.00 0.00 4.18
163 164 1.794116 GCTTGTTAACAACCGCGAGTA 59.206 47.619 17.01 0.00 0.00 2.59
164 165 2.221517 GCTTGTTAACAACCGCGAGTAA 59.778 45.455 17.01 0.00 0.00 2.24
165 166 3.303263 GCTTGTTAACAACCGCGAGTAAA 60.303 43.478 17.01 0.00 0.00 2.01
166 167 4.451557 CTTGTTAACAACCGCGAGTAAAG 58.548 43.478 17.01 0.00 0.00 1.85
167 168 2.801679 TGTTAACAACCGCGAGTAAAGG 59.198 45.455 8.23 0.00 0.00 3.11
168 169 2.802247 GTTAACAACCGCGAGTAAAGGT 59.198 45.455 8.23 0.00 40.50 3.50
169 170 1.505425 AACAACCGCGAGTAAAGGTC 58.495 50.000 8.23 0.00 37.26 3.85
170 171 0.320160 ACAACCGCGAGTAAAGGTCC 60.320 55.000 8.23 0.00 37.26 4.46
171 172 1.017701 CAACCGCGAGTAAAGGTCCC 61.018 60.000 8.23 0.00 37.26 4.46
172 173 2.176314 AACCGCGAGTAAAGGTCCCC 62.176 60.000 8.23 0.00 37.26 4.81
173 174 2.186125 CGCGAGTAAAGGTCCCCC 59.814 66.667 0.00 0.00 0.00 5.40
174 175 2.652095 CGCGAGTAAAGGTCCCCCA 61.652 63.158 0.00 0.00 0.00 4.96
175 176 1.221021 GCGAGTAAAGGTCCCCCAG 59.779 63.158 0.00 0.00 0.00 4.45
176 177 1.221021 CGAGTAAAGGTCCCCCAGC 59.779 63.158 0.00 0.00 0.00 4.85
177 178 1.608154 GAGTAAAGGTCCCCCAGCC 59.392 63.158 0.00 0.00 0.00 4.85
178 179 0.914902 GAGTAAAGGTCCCCCAGCCT 60.915 60.000 0.00 0.00 36.51 4.58
179 180 0.914902 AGTAAAGGTCCCCCAGCCTC 60.915 60.000 0.00 0.00 33.24 4.70
180 181 1.618447 TAAAGGTCCCCCAGCCTCC 60.618 63.158 0.00 0.00 33.24 4.30
221 222 3.590574 GGGCCTTTGGTCCCAGGT 61.591 66.667 0.84 0.00 42.67 4.00
222 223 2.035783 GGCCTTTGGTCCCAGGTC 59.964 66.667 0.00 0.14 0.00 3.85
223 224 2.359975 GCCTTTGGTCCCAGGTCG 60.360 66.667 6.16 0.00 0.00 4.79
224 225 3.157680 CCTTTGGTCCCAGGTCGT 58.842 61.111 0.00 0.00 0.00 4.34
225 226 1.302511 CCTTTGGTCCCAGGTCGTG 60.303 63.158 0.00 0.00 0.00 4.35
226 227 1.450211 CTTTGGTCCCAGGTCGTGT 59.550 57.895 0.00 0.00 0.00 4.49
227 228 0.179029 CTTTGGTCCCAGGTCGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
228 229 0.464735 TTTGGTCCCAGGTCGTGTTG 60.465 55.000 0.00 0.00 0.00 3.33
229 230 1.338890 TTGGTCCCAGGTCGTGTTGA 61.339 55.000 0.00 0.00 0.00 3.18
230 231 1.338890 TGGTCCCAGGTCGTGTTGAA 61.339 55.000 0.00 0.00 0.00 2.69
231 232 0.883370 GGTCCCAGGTCGTGTTGAAC 60.883 60.000 0.00 0.00 33.02 3.18
232 233 0.883370 GTCCCAGGTCGTGTTGAACC 60.883 60.000 0.00 0.00 33.45 3.62
233 234 1.959226 CCCAGGTCGTGTTGAACCG 60.959 63.158 0.00 0.00 33.45 4.44
234 235 1.959226 CCAGGTCGTGTTGAACCGG 60.959 63.158 0.00 0.00 33.45 5.28
235 236 1.959226 CAGGTCGTGTTGAACCGGG 60.959 63.158 6.32 0.00 33.45 5.73
236 237 2.135581 AGGTCGTGTTGAACCGGGA 61.136 57.895 6.32 0.00 33.45 5.14
237 238 1.957695 GGTCGTGTTGAACCGGGAC 60.958 63.158 6.32 0.00 0.00 4.46
238 239 1.068585 GTCGTGTTGAACCGGGACT 59.931 57.895 6.32 0.00 0.00 3.85
239 240 0.531311 GTCGTGTTGAACCGGGACTT 60.531 55.000 6.32 0.00 0.00 3.01
240 241 1.039068 TCGTGTTGAACCGGGACTTA 58.961 50.000 6.32 0.00 0.00 2.24
241 242 1.411977 TCGTGTTGAACCGGGACTTAA 59.588 47.619 6.32 0.00 0.00 1.85
242 243 1.796459 CGTGTTGAACCGGGACTTAAG 59.204 52.381 6.32 0.00 0.00 1.85
243 244 2.148768 GTGTTGAACCGGGACTTAAGG 58.851 52.381 6.32 0.00 0.00 2.69
244 245 1.072648 TGTTGAACCGGGACTTAAGGG 59.927 52.381 6.32 0.53 0.00 3.95
245 246 0.694196 TTGAACCGGGACTTAAGGGG 59.306 55.000 6.32 5.13 0.00 4.79
246 247 1.202769 TGAACCGGGACTTAAGGGGG 61.203 60.000 6.32 4.78 0.00 5.40
247 248 0.911045 GAACCGGGACTTAAGGGGGA 60.911 60.000 6.32 0.00 0.00 4.81
248 249 1.203441 AACCGGGACTTAAGGGGGAC 61.203 60.000 6.32 0.00 0.00 4.46
263 264 3.918134 GGACCTTTAATCCCCACCC 57.082 57.895 0.00 0.00 0.00 4.61
264 265 1.305886 GGACCTTTAATCCCCACCCT 58.694 55.000 0.00 0.00 0.00 4.34
265 266 1.644337 GGACCTTTAATCCCCACCCTT 59.356 52.381 0.00 0.00 0.00 3.95
266 267 2.043939 GGACCTTTAATCCCCACCCTTT 59.956 50.000 0.00 0.00 0.00 3.11
267 268 3.270169 GGACCTTTAATCCCCACCCTTTA 59.730 47.826 0.00 0.00 0.00 1.85
268 269 4.533815 GACCTTTAATCCCCACCCTTTAG 58.466 47.826 0.00 0.00 0.00 1.85
269 270 3.927322 ACCTTTAATCCCCACCCTTTAGT 59.073 43.478 0.00 0.00 0.00 2.24
270 271 4.264217 ACCTTTAATCCCCACCCTTTAGTG 60.264 45.833 0.00 0.00 37.51 2.74
271 272 3.375647 TTAATCCCCACCCTTTAGTGC 57.624 47.619 0.00 0.00 36.38 4.40
272 273 0.335019 AATCCCCACCCTTTAGTGCC 59.665 55.000 0.00 0.00 36.38 5.01
273 274 0.849094 ATCCCCACCCTTTAGTGCCA 60.849 55.000 0.00 0.00 36.38 4.92
274 275 1.000896 CCCCACCCTTTAGTGCCAG 60.001 63.158 0.00 0.00 36.38 4.85
275 276 1.767692 CCCACCCTTTAGTGCCAGT 59.232 57.895 0.00 0.00 36.38 4.00
276 277 0.112412 CCCACCCTTTAGTGCCAGTT 59.888 55.000 0.00 0.00 36.38 3.16
277 278 1.353022 CCCACCCTTTAGTGCCAGTTA 59.647 52.381 0.00 0.00 36.38 2.24
278 279 2.433436 CCACCCTTTAGTGCCAGTTAC 58.567 52.381 0.00 0.00 36.38 2.50
279 280 2.224670 CCACCCTTTAGTGCCAGTTACA 60.225 50.000 0.00 0.00 36.38 2.41
280 281 3.074412 CACCCTTTAGTGCCAGTTACAG 58.926 50.000 0.00 0.00 0.00 2.74
281 282 2.976882 ACCCTTTAGTGCCAGTTACAGA 59.023 45.455 0.00 0.00 0.00 3.41
282 283 3.393278 ACCCTTTAGTGCCAGTTACAGAA 59.607 43.478 0.00 0.00 0.00 3.02
283 284 3.751698 CCCTTTAGTGCCAGTTACAGAAC 59.248 47.826 0.00 0.00 35.64 3.01
284 285 3.751698 CCTTTAGTGCCAGTTACAGAACC 59.248 47.826 0.00 0.00 36.08 3.62
285 286 2.736144 TAGTGCCAGTTACAGAACCG 57.264 50.000 0.00 0.00 36.08 4.44
286 287 0.034896 AGTGCCAGTTACAGAACCGG 59.965 55.000 0.00 0.00 36.35 5.28
287 288 0.953960 GTGCCAGTTACAGAACCGGG 60.954 60.000 6.32 0.00 34.16 5.73
288 289 1.122632 TGCCAGTTACAGAACCGGGA 61.123 55.000 6.32 0.00 34.16 5.14
289 290 0.672711 GCCAGTTACAGAACCGGGAC 60.673 60.000 6.32 0.00 34.16 4.46
290 291 0.974383 CCAGTTACAGAACCGGGACT 59.026 55.000 6.32 0.73 36.08 3.85
291 292 2.173519 CCAGTTACAGAACCGGGACTA 58.826 52.381 6.32 0.00 36.08 2.59
292 293 2.564062 CCAGTTACAGAACCGGGACTAA 59.436 50.000 6.32 0.00 36.08 2.24
293 294 3.007182 CCAGTTACAGAACCGGGACTAAA 59.993 47.826 6.32 0.02 36.08 1.85
294 295 4.243270 CAGTTACAGAACCGGGACTAAAG 58.757 47.826 6.32 0.00 36.08 1.85
295 296 3.260128 AGTTACAGAACCGGGACTAAAGG 59.740 47.826 6.32 0.00 36.08 3.11
296 297 1.725803 ACAGAACCGGGACTAAAGGT 58.274 50.000 6.32 0.00 40.50 3.50
302 303 3.969287 ACCGGGACTAAAGGTTCTTAC 57.031 47.619 6.32 0.00 33.96 2.34
303 304 2.232208 ACCGGGACTAAAGGTTCTTACG 59.768 50.000 6.32 0.00 33.96 3.18
304 305 2.493278 CCGGGACTAAAGGTTCTTACGA 59.507 50.000 0.00 0.00 0.00 3.43
305 306 3.056607 CCGGGACTAAAGGTTCTTACGAA 60.057 47.826 0.00 0.00 0.00 3.85
306 307 3.922850 CGGGACTAAAGGTTCTTACGAAC 59.077 47.826 3.55 3.55 46.93 3.95
315 316 3.575965 GTTCTTACGAACCGGGACTAA 57.424 47.619 6.32 0.00 42.93 2.24
316 317 3.913089 GTTCTTACGAACCGGGACTAAA 58.087 45.455 6.32 0.00 42.93 1.85
317 318 3.855689 TCTTACGAACCGGGACTAAAG 57.144 47.619 6.32 4.01 0.00 1.85
318 319 2.094545 TCTTACGAACCGGGACTAAAGC 60.095 50.000 6.32 0.00 0.00 3.51
319 320 0.532115 TACGAACCGGGACTAAAGCC 59.468 55.000 6.32 0.00 0.00 4.35
320 321 1.449070 CGAACCGGGACTAAAGCCC 60.449 63.158 6.32 0.00 42.41 5.19
327 328 1.954927 GGGACTAAAGCCCGATTCTG 58.045 55.000 0.00 0.00 35.50 3.02
328 329 1.300481 GGACTAAAGCCCGATTCTGC 58.700 55.000 0.00 0.00 0.00 4.26
329 330 1.406887 GGACTAAAGCCCGATTCTGCA 60.407 52.381 0.00 0.00 0.00 4.41
330 331 1.666189 GACTAAAGCCCGATTCTGCAC 59.334 52.381 0.00 0.00 0.00 4.57
331 332 1.279271 ACTAAAGCCCGATTCTGCACT 59.721 47.619 0.00 0.00 0.00 4.40
332 333 2.500098 ACTAAAGCCCGATTCTGCACTA 59.500 45.455 0.00 0.00 0.00 2.74
333 334 2.029838 AAAGCCCGATTCTGCACTAG 57.970 50.000 0.00 0.00 0.00 2.57
334 335 0.905357 AAGCCCGATTCTGCACTAGT 59.095 50.000 0.00 0.00 0.00 2.57
335 336 0.176680 AGCCCGATTCTGCACTAGTG 59.823 55.000 18.93 18.93 0.00 2.74
340 341 2.101415 CCGATTCTGCACTAGTGGATGA 59.899 50.000 23.95 16.52 0.00 2.92
356 357 0.394938 ATGACACACCACCACGCTAA 59.605 50.000 0.00 0.00 0.00 3.09
365 366 0.955428 CACCACGCTAACACCAGCAT 60.955 55.000 0.00 0.00 41.88 3.79
400 401 2.260154 CGTGCCAGCACCAACATCA 61.260 57.895 16.69 0.00 43.49 3.07
401 402 1.588824 CGTGCCAGCACCAACATCAT 61.589 55.000 16.69 0.00 43.49 2.45
416 417 3.198068 ACATCATCAACCATCGCTACAC 58.802 45.455 0.00 0.00 0.00 2.90
476 477 4.115516 GCACATGTCACTGATCGACTTAT 58.884 43.478 0.00 0.00 34.37 1.73
477 478 5.163561 TGCACATGTCACTGATCGACTTATA 60.164 40.000 0.00 0.00 34.37 0.98
620 622 7.507797 TCCAATAAAATGGTTTTCATGGGAT 57.492 32.000 14.15 0.00 41.46 3.85
634 636 8.655970 GTTTTCATGGGATGTTTAATTGTTAGC 58.344 33.333 0.00 0.00 0.00 3.09
699 704 6.992063 ATCCTAATAACTCTGTTGTTGCAG 57.008 37.500 3.34 0.00 37.81 4.41
704 709 8.391106 CCTAATAACTCTGTTGTTGCAGATAAC 58.609 37.037 3.34 0.00 43.61 1.89
741 746 0.471591 AGCCCTCAAACCAAATGCCA 60.472 50.000 0.00 0.00 0.00 4.92
771 776 3.586618 AGATCTCCTCCAGCAAACTTCTT 59.413 43.478 0.00 0.00 0.00 2.52
826 832 3.135167 TCGTTTTAGTTGGGTGGAAGAGT 59.865 43.478 0.00 0.00 0.00 3.24
828 834 4.024302 CGTTTTAGTTGGGTGGAAGAGTTC 60.024 45.833 0.00 0.00 0.00 3.01
848 854 2.803155 TTCAGAGTCATGGGGCACGC 62.803 60.000 0.00 0.00 43.69 5.34
887 896 4.149396 GCTCGAACGAAACAAAGCTAGTAA 59.851 41.667 0.00 0.00 0.00 2.24
888 897 5.565723 TCGAACGAAACAAAGCTAGTAAC 57.434 39.130 0.00 0.00 0.00 2.50
889 898 4.146961 TCGAACGAAACAAAGCTAGTAACG 59.853 41.667 12.61 12.61 0.00 3.18
890 899 4.662394 CGAACGAAACAAAGCTAGTAACGG 60.662 45.833 16.03 0.00 0.00 4.44
891 900 3.981211 ACGAAACAAAGCTAGTAACGGA 58.019 40.909 16.03 0.00 0.00 4.69
892 901 4.370917 ACGAAACAAAGCTAGTAACGGAA 58.629 39.130 16.03 0.00 0.00 4.30
893 902 4.810491 ACGAAACAAAGCTAGTAACGGAAA 59.190 37.500 16.03 0.00 0.00 3.13
894 903 5.135330 CGAAACAAAGCTAGTAACGGAAAC 58.865 41.667 0.00 0.00 0.00 2.78
895 904 5.276963 CGAAACAAAGCTAGTAACGGAAACA 60.277 40.000 0.00 0.00 0.00 2.83
896 905 5.668558 AACAAAGCTAGTAACGGAAACAG 57.331 39.130 0.00 0.00 0.00 3.16
897 906 4.952460 ACAAAGCTAGTAACGGAAACAGA 58.048 39.130 0.00 0.00 0.00 3.41
898 907 4.989168 ACAAAGCTAGTAACGGAAACAGAG 59.011 41.667 0.00 0.00 0.00 3.35
899 908 4.868314 AAGCTAGTAACGGAAACAGAGT 57.132 40.909 0.00 0.00 0.00 3.24
900 909 4.437772 AGCTAGTAACGGAAACAGAGTC 57.562 45.455 0.00 0.00 0.00 3.36
901 910 3.825014 AGCTAGTAACGGAAACAGAGTCA 59.175 43.478 0.00 0.00 0.00 3.41
902 911 4.463186 AGCTAGTAACGGAAACAGAGTCAT 59.537 41.667 0.00 0.00 0.00 3.06
903 912 4.563184 GCTAGTAACGGAAACAGAGTCATG 59.437 45.833 0.00 0.00 0.00 3.07
904 913 4.602340 AGTAACGGAAACAGAGTCATGT 57.398 40.909 0.00 0.00 33.96 3.21
905 914 4.307432 AGTAACGGAAACAGAGTCATGTG 58.693 43.478 0.00 0.00 32.52 3.21
906 915 2.910688 ACGGAAACAGAGTCATGTGT 57.089 45.000 0.00 0.00 33.59 3.72
907 916 2.755650 ACGGAAACAGAGTCATGTGTC 58.244 47.619 0.00 0.00 36.80 3.67
908 917 2.102420 ACGGAAACAGAGTCATGTGTCA 59.898 45.455 12.25 0.00 38.91 3.58
909 918 2.733552 CGGAAACAGAGTCATGTGTCAG 59.266 50.000 12.25 6.84 38.91 3.51
910 919 3.733337 GGAAACAGAGTCATGTGTCAGT 58.267 45.455 12.25 0.00 38.91 3.41
911 920 3.496130 GGAAACAGAGTCATGTGTCAGTG 59.504 47.826 12.25 0.00 38.91 3.66
912 921 3.827008 AACAGAGTCATGTGTCAGTGT 57.173 42.857 0.00 0.00 30.24 3.55
913 922 4.937201 AACAGAGTCATGTGTCAGTGTA 57.063 40.909 0.00 0.00 30.24 2.90
914 923 4.511617 ACAGAGTCATGTGTCAGTGTAG 57.488 45.455 0.00 0.00 30.46 2.74
915 924 3.891977 ACAGAGTCATGTGTCAGTGTAGT 59.108 43.478 0.00 0.00 30.46 2.73
916 925 5.070685 ACAGAGTCATGTGTCAGTGTAGTA 58.929 41.667 0.00 0.00 30.46 1.82
917 926 5.048643 ACAGAGTCATGTGTCAGTGTAGTAC 60.049 44.000 0.00 0.00 30.46 2.73
918 927 5.182190 CAGAGTCATGTGTCAGTGTAGTACT 59.818 44.000 0.00 0.00 41.36 2.73
919 928 6.371825 CAGAGTCATGTGTCAGTGTAGTACTA 59.628 42.308 0.00 0.00 37.60 1.82
920 929 6.596106 AGAGTCATGTGTCAGTGTAGTACTAG 59.404 42.308 1.87 0.00 37.60 2.57
921 930 6.239396 AGTCATGTGTCAGTGTAGTACTAGT 58.761 40.000 1.87 0.00 37.60 2.57
922 931 7.392418 AGTCATGTGTCAGTGTAGTACTAGTA 58.608 38.462 1.87 0.00 37.60 1.82
931 940 5.800941 CAGTGTAGTACTAGTAAGCACTTGC 59.199 44.000 22.21 9.88 37.60 4.01
971 980 3.328050 AGTCAAACTTACCCCTCTCAAGG 59.672 47.826 0.00 0.00 42.95 3.61
992 1001 4.278669 AGGATCAAATCTCAATGCATGCTC 59.721 41.667 20.33 2.63 0.00 4.26
1038 1048 3.841845 TCTCCTCGATTCCCCTAAACAAA 59.158 43.478 0.00 0.00 0.00 2.83
1059 1071 5.559148 AATCAAGTCTTCTTCTCCACACT 57.441 39.130 0.00 0.00 0.00 3.55
1096 1108 3.875134 TCAGGTTCTTTCGTGTTCTTTCC 59.125 43.478 0.00 0.00 0.00 3.13
1151 1163 3.550437 AGCAAGCCTGATTCTAACGAT 57.450 42.857 0.00 0.00 0.00 3.73
1236 1249 7.328493 CCAAAGGTAAACAAAAGCATTACTAGC 59.672 37.037 0.00 0.00 31.73 3.42
1254 1268 6.521151 ACTAGCTCTTTAACGGCTACTTTA 57.479 37.500 0.00 0.00 37.50 1.85
1256 1270 5.402997 AGCTCTTTAACGGCTACTTTACT 57.597 39.130 0.00 0.00 34.31 2.24
1364 1457 2.313317 CACCATGCTGGGCAGATTATT 58.687 47.619 7.06 0.00 43.65 1.40
1377 1470 0.307760 GATTATTGGGAGCGCCGTTG 59.692 55.000 2.29 0.00 33.83 4.10
1393 1486 0.250467 GTTGAGGAACAGCAGCTCCA 60.250 55.000 1.05 0.00 32.21 3.86
1408 1501 1.601419 CTCCAGCACCCCAAATGCAG 61.601 60.000 0.00 0.00 45.92 4.41
1419 1512 1.061799 CAAATGCAGCGCGTTCAGAC 61.062 55.000 8.43 0.00 36.71 3.51
1456 1558 6.486253 TTTCTGAACTTTCTGAATGATCCG 57.514 37.500 9.92 4.89 42.24 4.18
1493 1595 2.019984 GCTAAATGCCTGGTCTCTTGG 58.980 52.381 0.00 0.00 35.15 3.61
1498 1600 0.108585 TGCCTGGTCTCTTGGTCAAC 59.891 55.000 0.00 0.00 0.00 3.18
1500 1602 0.320771 CCTGGTCTCTTGGTCAACCG 60.321 60.000 0.00 0.00 39.43 4.44
1508 1612 2.884639 CTCTTGGTCAACCGATGGTTTT 59.115 45.455 0.00 0.00 44.33 2.43
1524 1628 7.318141 CGATGGTTTTTAGAGTGTAGAGGTTA 58.682 38.462 0.00 0.00 0.00 2.85
1542 1646 3.243401 GGTTACAACAGCAAGAAACCCTG 60.243 47.826 0.00 0.00 32.09 4.45
1543 1647 2.435372 ACAACAGCAAGAAACCCTGA 57.565 45.000 0.00 0.00 0.00 3.86
1544 1648 2.733956 ACAACAGCAAGAAACCCTGAA 58.266 42.857 0.00 0.00 0.00 3.02
1714 1834 0.108585 TGCACTTCACCCTTCACTCC 59.891 55.000 0.00 0.00 0.00 3.85
1716 1836 0.951040 CACTTCACCCTTCACTCCGC 60.951 60.000 0.00 0.00 0.00 5.54
1887 2070 8.317679 ACAAGAACTAGCACTAGATTTTCAGAT 58.682 33.333 11.59 0.00 36.97 2.90
1891 2074 8.934507 AACTAGCACTAGATTTTCAGATGTAC 57.065 34.615 11.59 0.00 36.97 2.90
1892 2075 7.197017 ACTAGCACTAGATTTTCAGATGTACG 58.803 38.462 11.59 0.00 36.97 3.67
1897 2080 6.693545 CACTAGATTTTCAGATGTACGACTCC 59.306 42.308 0.00 0.00 0.00 3.85
1908 2091 4.794164 CGACTCCGTGGTCATCAG 57.206 61.111 5.98 0.00 36.12 2.90
1915 2098 3.181454 ACTCCGTGGTCATCAGTTCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
2182 2655 2.498167 GTGCACTGACAATCTTCAGGT 58.502 47.619 10.32 0.00 46.38 4.00
2243 2728 0.749454 GGTTCCTGCATCCGAGCATT 60.749 55.000 0.00 0.00 44.68 3.56
2303 2788 2.594962 CGGCGTCGACAACTTTGCT 61.595 57.895 17.16 0.00 39.00 3.91
2318 2803 3.276846 GCTGCGGAACCGTGTGTT 61.277 61.111 14.63 0.00 42.09 3.32
2379 2879 2.646930 TGTGGATGATGATCAACAGGC 58.353 47.619 11.58 6.03 37.57 4.85
2380 2880 1.600957 GTGGATGATGATCAACAGGCG 59.399 52.381 11.58 0.00 33.16 5.52
2419 2925 2.022195 TGCAGGTACCTAGACATCGTC 58.978 52.381 15.80 0.00 0.00 4.20
2449 2955 3.086391 GCTGGAGATCTCGCAGCCA 62.086 63.158 33.79 21.05 42.61 4.75
2726 4983 0.596083 CGGACGCATTTTGGTTTGCA 60.596 50.000 0.00 0.00 38.80 4.08
2798 5078 9.807921 GTAGGATTGGATGGGATTAATTAAGAA 57.192 33.333 3.94 0.00 0.00 2.52
2892 5406 2.126057 TGTGGCATATGATCCAGGTGA 58.874 47.619 6.97 0.00 32.15 4.02
2938 5461 6.817765 TCCTACCATTGACATTTTTCACTC 57.182 37.500 0.00 0.00 0.00 3.51
2939 5462 6.303054 TCCTACCATTGACATTTTTCACTCA 58.697 36.000 0.00 0.00 0.00 3.41
3067 5596 6.322969 TCAGATTATTTGAGCAGCATTTGGAT 59.677 34.615 0.00 0.00 0.00 3.41
3119 5666 7.994425 TTTTGCACCTTTACTCATCTGAATA 57.006 32.000 0.00 0.00 0.00 1.75
3200 5747 2.342279 CGTTCCCACGCTCCAAGA 59.658 61.111 0.00 0.00 40.18 3.02
3213 5760 3.619979 CGCTCCAAGACCAGGTAATTCTT 60.620 47.826 0.00 0.00 0.00 2.52
3227 5774 9.277783 CCAGGTAATTCTTGAATTATTCTCGAT 57.722 33.333 15.92 0.00 0.00 3.59
3229 5776 9.838339 AGGTAATTCTTGAATTATTCTCGATGT 57.162 29.630 15.92 0.00 0.00 3.06
3277 5863 3.473113 AGCTCTCCTCCTTTTCTCTCT 57.527 47.619 0.00 0.00 0.00 3.10
3365 5954 6.817765 TTGTATGTCCATCTTCTTTTGTCC 57.182 37.500 0.00 0.00 0.00 4.02
3366 5955 6.126863 TGTATGTCCATCTTCTTTTGTCCT 57.873 37.500 0.00 0.00 0.00 3.85
3370 5959 9.178758 GTATGTCCATCTTCTTTTGTCCTTATT 57.821 33.333 0.00 0.00 0.00 1.40
3371 5960 8.655935 ATGTCCATCTTCTTTTGTCCTTATTT 57.344 30.769 0.00 0.00 0.00 1.40
3372 5961 8.477419 TGTCCATCTTCTTTTGTCCTTATTTT 57.523 30.769 0.00 0.00 0.00 1.82
3373 5962 8.359642 TGTCCATCTTCTTTTGTCCTTATTTTG 58.640 33.333 0.00 0.00 0.00 2.44
3395 6005 8.610248 TTTGTATGTTCGTTAATGAAGAAGGA 57.390 30.769 10.41 0.00 0.00 3.36
3453 6173 6.940298 TGAAGGTCTTTCCAGTTATACCTTTG 59.060 38.462 6.06 0.00 45.04 2.77
3737 7546 6.227522 TGTTGCTTATTAACACTAGCTCACA 58.772 36.000 0.00 0.00 33.43 3.58
3907 7716 8.855110 AGCACTCTATACAGGATATATATGTGC 58.145 37.037 14.75 14.75 40.50 4.57
3947 7756 4.119442 TCTGCTCACGGTAAATAGTTCC 57.881 45.455 0.00 0.00 0.00 3.62
3959 7768 3.433513 AATAGTTCCGTTACGAGCCTC 57.566 47.619 6.24 0.00 0.00 4.70
3991 7800 2.131023 ACATGAGGGAGAAGGGGATTC 58.869 52.381 0.00 0.00 38.28 2.52
4010 7822 1.613630 GGGGTGAGGAGGCTTGAGA 60.614 63.158 0.00 0.00 0.00 3.27
4064 8797 8.850156 AGGATGGCTAATGTTTTGTGTTATATC 58.150 33.333 0.00 0.00 0.00 1.63
4065 8798 8.629158 GGATGGCTAATGTTTTGTGTTATATCA 58.371 33.333 0.00 0.00 0.00 2.15
4202 9880 7.092846 ACAACTATACTTCTAGCATTCCACCTT 60.093 37.037 0.00 0.00 0.00 3.50
4212 9890 0.613260 ATTCCACCTTAGTCGCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
4238 9949 6.161855 AGTGAAGCGGATATGACTGAATTA 57.838 37.500 0.00 0.00 0.00 1.40
4247 9958 8.082852 GCGGATATGACTGAATTAGAAGTCTAA 58.917 37.037 13.58 3.33 42.72 2.10
4249 9960 9.699703 GGATATGACTGAATTAGAAGTCTAACC 57.300 37.037 13.58 9.27 42.72 2.85
4344 11317 1.204113 CCCTTCTGGTGCCTTCCTCT 61.204 60.000 0.00 0.00 0.00 3.69
4358 11331 3.837731 CCTTCCTCTTCTCTCCTCTGTTT 59.162 47.826 0.00 0.00 0.00 2.83
4409 11382 1.502640 GCTAGTGACGACGCAGACT 59.497 57.895 0.62 0.00 0.00 3.24
4493 11504 4.878397 GGTAGCCAATCATGATATAGCCAC 59.122 45.833 9.04 10.87 0.00 5.01
4512 11543 1.741706 ACGGTCGATGATGTAGTCGTT 59.258 47.619 0.00 0.00 38.85 3.85
4533 11564 0.745486 TGGATGATGAAGCCGCACAG 60.745 55.000 0.00 0.00 0.00 3.66
4543 11703 4.457496 CCGCACAGAGCCGGATGT 62.457 66.667 5.05 3.05 41.38 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.241067 TCCAAATCGTCTAACTTCCCG 57.759 47.619 0.00 0.00 0.00 5.14
5 6 4.631813 GCACTCATTCCAAATCGTCTAACT 59.368 41.667 0.00 0.00 0.00 2.24
6 7 4.631813 AGCACTCATTCCAAATCGTCTAAC 59.368 41.667 0.00 0.00 0.00 2.34
7 8 4.832248 AGCACTCATTCCAAATCGTCTAA 58.168 39.130 0.00 0.00 0.00 2.10
8 9 4.433615 GAGCACTCATTCCAAATCGTCTA 58.566 43.478 0.00 0.00 0.00 2.59
9 10 3.265791 GAGCACTCATTCCAAATCGTCT 58.734 45.455 0.00 0.00 0.00 4.18
10 11 2.352960 GGAGCACTCATTCCAAATCGTC 59.647 50.000 0.00 0.00 33.55 4.20
11 12 2.290260 TGGAGCACTCATTCCAAATCGT 60.290 45.455 0.00 0.00 40.41 3.73
12 13 2.096496 GTGGAGCACTCATTCCAAATCG 59.904 50.000 0.00 0.00 44.61 3.34
13 14 3.084039 TGTGGAGCACTCATTCCAAATC 58.916 45.455 0.00 0.00 44.61 2.17
14 15 2.821969 GTGTGGAGCACTCATTCCAAAT 59.178 45.455 0.00 0.00 44.61 2.32
15 16 2.229792 GTGTGGAGCACTCATTCCAAA 58.770 47.619 0.00 0.00 44.61 3.28
16 17 1.896220 GTGTGGAGCACTCATTCCAA 58.104 50.000 0.00 0.00 44.61 3.53
17 18 3.631453 GTGTGGAGCACTCATTCCA 57.369 52.632 0.00 0.00 44.41 3.53
28 29 2.289257 TGATCAGTGCTCAAGTGTGGAG 60.289 50.000 0.00 0.00 35.47 3.86
29 30 1.693606 TGATCAGTGCTCAAGTGTGGA 59.306 47.619 0.00 0.00 0.00 4.02
30 31 2.074576 CTGATCAGTGCTCAAGTGTGG 58.925 52.381 14.95 0.00 0.00 4.17
31 32 2.074576 CCTGATCAGTGCTCAAGTGTG 58.925 52.381 21.11 0.00 0.00 3.82
32 33 1.002888 CCCTGATCAGTGCTCAAGTGT 59.997 52.381 21.11 0.00 0.00 3.55
33 34 1.678123 CCCCTGATCAGTGCTCAAGTG 60.678 57.143 21.11 2.66 0.00 3.16
34 35 0.617413 CCCCTGATCAGTGCTCAAGT 59.383 55.000 21.11 0.00 0.00 3.16
35 36 0.617413 ACCCCTGATCAGTGCTCAAG 59.383 55.000 21.11 4.09 0.00 3.02
36 37 0.325933 CACCCCTGATCAGTGCTCAA 59.674 55.000 21.11 0.00 0.00 3.02
37 38 0.545071 TCACCCCTGATCAGTGCTCA 60.545 55.000 21.11 0.00 0.00 4.26
38 39 0.177604 CTCACCCCTGATCAGTGCTC 59.822 60.000 21.11 0.00 0.00 4.26
39 40 0.252421 TCTCACCCCTGATCAGTGCT 60.252 55.000 21.11 0.00 0.00 4.40
40 41 0.835941 ATCTCACCCCTGATCAGTGC 59.164 55.000 21.11 0.00 0.00 4.40
41 42 4.760530 TTAATCTCACCCCTGATCAGTG 57.239 45.455 21.11 13.76 0.00 3.66
42 43 5.453903 CGAATTAATCTCACCCCTGATCAGT 60.454 44.000 21.11 0.79 0.00 3.41
43 44 4.993584 CGAATTAATCTCACCCCTGATCAG 59.006 45.833 16.24 16.24 0.00 2.90
44 45 4.408921 ACGAATTAATCTCACCCCTGATCA 59.591 41.667 0.00 0.00 0.00 2.92
45 46 4.962155 ACGAATTAATCTCACCCCTGATC 58.038 43.478 0.00 0.00 0.00 2.92
46 47 4.408921 TGACGAATTAATCTCACCCCTGAT 59.591 41.667 0.00 0.00 0.00 2.90
47 48 3.772572 TGACGAATTAATCTCACCCCTGA 59.227 43.478 0.00 0.00 0.00 3.86
48 49 4.137116 TGACGAATTAATCTCACCCCTG 57.863 45.455 0.00 0.00 0.00 4.45
49 50 4.837093 TTGACGAATTAATCTCACCCCT 57.163 40.909 0.00 0.00 0.00 4.79
50 51 7.562454 TTATTTGACGAATTAATCTCACCCC 57.438 36.000 0.00 0.00 0.00 4.95
51 52 9.665264 GAATTATTTGACGAATTAATCTCACCC 57.335 33.333 0.00 0.00 0.00 4.61
144 145 4.451557 CTTTACTCGCGGTTGTTAACAAG 58.548 43.478 21.12 11.72 36.39 3.16
145 146 3.248125 CCTTTACTCGCGGTTGTTAACAA 59.752 43.478 17.01 17.01 0.00 2.83
146 147 2.801679 CCTTTACTCGCGGTTGTTAACA 59.198 45.455 6.13 3.59 0.00 2.41
147 148 2.802247 ACCTTTACTCGCGGTTGTTAAC 59.198 45.455 6.13 0.00 0.00 2.01
148 149 3.059166 GACCTTTACTCGCGGTTGTTAA 58.941 45.455 6.13 2.86 0.00 2.01
149 150 2.610232 GGACCTTTACTCGCGGTTGTTA 60.610 50.000 6.13 0.00 0.00 2.41
150 151 1.505425 GACCTTTACTCGCGGTTGTT 58.495 50.000 6.13 0.00 0.00 2.83
151 152 0.320160 GGACCTTTACTCGCGGTTGT 60.320 55.000 6.13 5.89 0.00 3.32
152 153 1.017701 GGGACCTTTACTCGCGGTTG 61.018 60.000 6.13 0.00 0.00 3.77
153 154 1.294459 GGGACCTTTACTCGCGGTT 59.706 57.895 6.13 0.00 0.00 4.44
154 155 2.976356 GGGACCTTTACTCGCGGT 59.024 61.111 6.13 5.79 0.00 5.68
201 202 3.886550 CTGGGACCAAAGGCCCACC 62.887 68.421 1.39 0.00 41.61 4.61
202 203 2.283173 CTGGGACCAAAGGCCCAC 60.283 66.667 1.39 0.00 41.61 4.61
203 204 3.589542 CCTGGGACCAAAGGCCCA 61.590 66.667 6.49 6.49 43.26 5.36
204 205 3.585525 GACCTGGGACCAAAGGCCC 62.586 68.421 11.52 0.00 38.78 5.80
205 206 2.035783 GACCTGGGACCAAAGGCC 59.964 66.667 11.52 0.00 37.03 5.19
206 207 2.359975 CGACCTGGGACCAAAGGC 60.360 66.667 11.52 5.07 37.03 4.35
207 208 1.302511 CACGACCTGGGACCAAAGG 60.303 63.158 10.28 10.28 39.65 3.11
208 209 0.179029 AACACGACCTGGGACCAAAG 60.179 55.000 0.00 0.00 0.00 2.77
209 210 0.464735 CAACACGACCTGGGACCAAA 60.465 55.000 0.00 0.00 0.00 3.28
210 211 1.147376 CAACACGACCTGGGACCAA 59.853 57.895 0.00 0.00 0.00 3.67
211 212 1.338890 TTCAACACGACCTGGGACCA 61.339 55.000 0.00 0.00 0.00 4.02
212 213 0.883370 GTTCAACACGACCTGGGACC 60.883 60.000 0.00 0.00 0.00 4.46
213 214 0.883370 GGTTCAACACGACCTGGGAC 60.883 60.000 0.00 0.00 33.08 4.46
214 215 1.448497 GGTTCAACACGACCTGGGA 59.552 57.895 0.00 0.00 33.08 4.37
215 216 1.959226 CGGTTCAACACGACCTGGG 60.959 63.158 0.00 0.00 33.69 4.45
216 217 1.959226 CCGGTTCAACACGACCTGG 60.959 63.158 0.00 0.00 33.69 4.45
217 218 1.959226 CCCGGTTCAACACGACCTG 60.959 63.158 0.00 0.00 33.69 4.00
218 219 2.135581 TCCCGGTTCAACACGACCT 61.136 57.895 0.00 0.00 33.69 3.85
219 220 1.957695 GTCCCGGTTCAACACGACC 60.958 63.158 0.00 0.00 0.00 4.79
220 221 0.531311 AAGTCCCGGTTCAACACGAC 60.531 55.000 0.00 0.00 0.00 4.34
221 222 1.039068 TAAGTCCCGGTTCAACACGA 58.961 50.000 0.00 0.00 0.00 4.35
222 223 1.796459 CTTAAGTCCCGGTTCAACACG 59.204 52.381 0.00 0.00 0.00 4.49
223 224 2.148768 CCTTAAGTCCCGGTTCAACAC 58.851 52.381 0.00 0.00 0.00 3.32
224 225 1.072648 CCCTTAAGTCCCGGTTCAACA 59.927 52.381 0.00 0.00 0.00 3.33
225 226 1.612462 CCCCTTAAGTCCCGGTTCAAC 60.612 57.143 0.00 0.00 0.00 3.18
226 227 0.694196 CCCCTTAAGTCCCGGTTCAA 59.306 55.000 0.00 0.00 0.00 2.69
227 228 1.202769 CCCCCTTAAGTCCCGGTTCA 61.203 60.000 0.00 0.00 0.00 3.18
228 229 0.911045 TCCCCCTTAAGTCCCGGTTC 60.911 60.000 0.00 0.00 0.00 3.62
229 230 1.161598 TCCCCCTTAAGTCCCGGTT 59.838 57.895 0.00 0.00 0.00 4.44
230 231 1.614525 GTCCCCCTTAAGTCCCGGT 60.615 63.158 0.00 0.00 0.00 5.28
231 232 2.372890 GGTCCCCCTTAAGTCCCGG 61.373 68.421 0.97 0.00 0.00 5.73
232 233 1.306739 AGGTCCCCCTTAAGTCCCG 60.307 63.158 0.97 0.00 38.13 5.14
233 234 4.935925 AGGTCCCCCTTAAGTCCC 57.064 61.111 0.97 0.00 38.13 4.46
245 246 1.305886 AGGGTGGGGATTAAAGGTCC 58.694 55.000 0.00 0.00 34.92 4.46
246 247 3.468071 AAAGGGTGGGGATTAAAGGTC 57.532 47.619 0.00 0.00 0.00 3.85
247 248 3.927322 ACTAAAGGGTGGGGATTAAAGGT 59.073 43.478 0.00 0.00 0.00 3.50
248 249 4.278310 CACTAAAGGGTGGGGATTAAAGG 58.722 47.826 0.00 0.00 33.95 3.11
249 250 3.699538 GCACTAAAGGGTGGGGATTAAAG 59.300 47.826 0.00 0.00 37.65 1.85
250 251 3.564790 GGCACTAAAGGGTGGGGATTAAA 60.565 47.826 0.00 0.00 37.65 1.52
251 252 2.024751 GGCACTAAAGGGTGGGGATTAA 60.025 50.000 0.00 0.00 37.65 1.40
252 253 1.567175 GGCACTAAAGGGTGGGGATTA 59.433 52.381 0.00 0.00 37.65 1.75
253 254 0.335019 GGCACTAAAGGGTGGGGATT 59.665 55.000 0.00 0.00 37.65 3.01
254 255 0.849094 TGGCACTAAAGGGTGGGGAT 60.849 55.000 0.00 0.00 37.65 3.85
255 256 1.464395 TGGCACTAAAGGGTGGGGA 60.464 57.895 0.00 0.00 37.65 4.81
256 257 1.000896 CTGGCACTAAAGGGTGGGG 60.001 63.158 0.00 0.00 37.65 4.96
257 258 0.112412 AACTGGCACTAAAGGGTGGG 59.888 55.000 0.00 0.00 37.65 4.61
258 259 2.224670 TGTAACTGGCACTAAAGGGTGG 60.225 50.000 0.00 0.00 37.65 4.61
259 260 3.074412 CTGTAACTGGCACTAAAGGGTG 58.926 50.000 0.00 0.00 39.91 4.61
260 261 2.976882 TCTGTAACTGGCACTAAAGGGT 59.023 45.455 0.00 0.00 0.00 4.34
261 262 3.695830 TCTGTAACTGGCACTAAAGGG 57.304 47.619 0.00 0.00 0.00 3.95
262 263 3.751698 GGTTCTGTAACTGGCACTAAAGG 59.248 47.826 0.00 0.00 35.81 3.11
263 264 3.432252 CGGTTCTGTAACTGGCACTAAAG 59.568 47.826 0.00 0.00 38.18 1.85
264 265 3.395639 CGGTTCTGTAACTGGCACTAAA 58.604 45.455 0.00 0.00 38.18 1.85
265 266 3.034721 CGGTTCTGTAACTGGCACTAA 57.965 47.619 0.00 0.00 38.18 2.24
266 267 2.736144 CGGTTCTGTAACTGGCACTA 57.264 50.000 0.00 0.00 38.18 2.74
267 268 3.606886 CGGTTCTGTAACTGGCACT 57.393 52.632 0.00 0.00 38.18 4.40
272 273 3.947910 TTAGTCCCGGTTCTGTAACTG 57.052 47.619 0.00 0.00 41.01 3.16
273 274 3.260128 CCTTTAGTCCCGGTTCTGTAACT 59.740 47.826 0.00 0.00 35.81 2.24
274 275 3.007290 ACCTTTAGTCCCGGTTCTGTAAC 59.993 47.826 0.00 0.00 34.66 2.50
275 276 3.242011 ACCTTTAGTCCCGGTTCTGTAA 58.758 45.455 0.00 0.00 0.00 2.41
276 277 2.893424 ACCTTTAGTCCCGGTTCTGTA 58.107 47.619 0.00 0.00 0.00 2.74
277 278 1.725803 ACCTTTAGTCCCGGTTCTGT 58.274 50.000 0.00 0.00 0.00 3.41
278 279 2.853235 AACCTTTAGTCCCGGTTCTG 57.147 50.000 0.00 0.00 36.32 3.02
281 282 3.306294 CGTAAGAACCTTTAGTCCCGGTT 60.306 47.826 0.00 0.00 43.32 4.44
282 283 2.232208 CGTAAGAACCTTTAGTCCCGGT 59.768 50.000 0.00 0.00 43.02 5.28
283 284 2.884827 CGTAAGAACCTTTAGTCCCGG 58.115 52.381 0.00 0.00 43.02 5.73
298 299 2.265683 GCTTTAGTCCCGGTTCGTAAG 58.734 52.381 0.00 0.00 0.00 2.34
299 300 1.066929 GGCTTTAGTCCCGGTTCGTAA 60.067 52.381 0.00 0.00 0.00 3.18
300 301 0.532115 GGCTTTAGTCCCGGTTCGTA 59.468 55.000 0.00 0.00 0.00 3.43
301 302 1.294459 GGCTTTAGTCCCGGTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
302 303 1.449070 GGGCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 32.49 3.95
303 304 4.631773 GGGCTTTAGTCCCGGTTC 57.368 61.111 0.00 0.00 32.49 3.62
308 309 1.954927 CAGAATCGGGCTTTAGTCCC 58.045 55.000 0.00 0.00 36.14 4.46
309 310 1.300481 GCAGAATCGGGCTTTAGTCC 58.700 55.000 0.00 0.00 36.18 3.85
310 311 1.666189 GTGCAGAATCGGGCTTTAGTC 59.334 52.381 0.00 0.00 0.00 2.59
311 312 1.279271 AGTGCAGAATCGGGCTTTAGT 59.721 47.619 0.00 0.00 0.00 2.24
312 313 2.029838 AGTGCAGAATCGGGCTTTAG 57.970 50.000 0.00 0.00 0.00 1.85
313 314 2.500098 ACTAGTGCAGAATCGGGCTTTA 59.500 45.455 0.00 0.00 0.00 1.85
314 315 1.279271 ACTAGTGCAGAATCGGGCTTT 59.721 47.619 0.00 0.00 0.00 3.51
315 316 0.905357 ACTAGTGCAGAATCGGGCTT 59.095 50.000 0.00 0.00 0.00 4.35
316 317 0.176680 CACTAGTGCAGAATCGGGCT 59.823 55.000 10.54 0.00 0.00 5.19
317 318 0.811616 CCACTAGTGCAGAATCGGGC 60.812 60.000 17.86 0.00 0.00 6.13
318 319 0.824109 TCCACTAGTGCAGAATCGGG 59.176 55.000 17.86 0.34 0.00 5.14
319 320 2.101415 TCATCCACTAGTGCAGAATCGG 59.899 50.000 17.86 1.11 0.00 4.18
320 321 3.119291 GTCATCCACTAGTGCAGAATCG 58.881 50.000 17.86 2.03 0.00 3.34
321 322 3.868077 GTGTCATCCACTAGTGCAGAATC 59.132 47.826 17.86 6.34 41.11 2.52
322 323 3.261643 TGTGTCATCCACTAGTGCAGAAT 59.738 43.478 17.86 5.07 44.81 2.40
323 324 2.632512 TGTGTCATCCACTAGTGCAGAA 59.367 45.455 17.86 2.83 44.81 3.02
324 325 2.029020 GTGTGTCATCCACTAGTGCAGA 60.029 50.000 17.86 10.65 44.81 4.26
325 326 2.341257 GTGTGTCATCCACTAGTGCAG 58.659 52.381 17.86 8.99 44.81 4.41
326 327 1.001974 GGTGTGTCATCCACTAGTGCA 59.998 52.381 17.86 2.29 44.81 4.57
327 328 1.001974 TGGTGTGTCATCCACTAGTGC 59.998 52.381 17.86 3.94 44.81 4.40
334 335 1.070615 CGTGGTGGTGTGTCATCCA 59.929 57.895 0.00 0.00 0.00 3.41
335 336 2.325082 GCGTGGTGGTGTGTCATCC 61.325 63.158 0.00 0.00 0.00 3.51
340 341 0.812412 GTGTTAGCGTGGTGGTGTGT 60.812 55.000 0.00 0.00 0.00 3.72
356 357 4.760047 GGTCGGCGATGCTGGTGT 62.760 66.667 14.79 0.00 35.34 4.16
400 401 0.821517 TCGGTGTAGCGATGGTTGAT 59.178 50.000 1.62 0.00 0.00 2.57
401 402 0.821517 ATCGGTGTAGCGATGGTTGA 59.178 50.000 16.94 0.00 0.00 3.18
458 459 4.021894 GGCCTATAAGTCGATCAGTGACAT 60.022 45.833 0.00 0.00 38.83 3.06
551 553 2.370849 TGTCTGACCCCTAGTTTTGTCC 59.629 50.000 5.17 0.00 0.00 4.02
606 608 7.072263 ACAATTAAACATCCCATGAAAACCA 57.928 32.000 0.00 0.00 0.00 3.67
608 610 8.655970 GCTAACAATTAAACATCCCATGAAAAC 58.344 33.333 0.00 0.00 0.00 2.43
620 622 6.373216 ACAATAGCTCCGCTAACAATTAAACA 59.627 34.615 0.00 0.00 44.62 2.83
634 636 7.772332 AGTTAGAACAATTACAATAGCTCCG 57.228 36.000 0.00 0.00 0.00 4.63
651 656 5.303078 TGCAATGGTTTTGGCTTAGTTAGAA 59.697 36.000 0.00 0.00 0.00 2.10
699 704 5.658198 ACCAAGGGTTTATAGGGGTTATC 57.342 43.478 0.00 0.00 27.29 1.75
704 709 2.107726 GGCTACCAAGGGTTTATAGGGG 59.892 54.545 0.00 0.00 37.09 4.79
741 746 2.625790 GCTGGAGGAGATCTATCAACGT 59.374 50.000 0.00 0.00 0.00 3.99
771 776 9.880254 TTATAATTGGATGGAATGAAGGAATCA 57.120 29.630 0.00 0.00 43.67 2.57
826 832 1.003580 GTGCCCCATGACTCTGAAGAA 59.996 52.381 0.00 0.00 0.00 2.52
828 834 0.742281 CGTGCCCCATGACTCTGAAG 60.742 60.000 0.00 0.00 0.00 3.02
848 854 2.126502 GCAACGGAAATGTGGGCG 60.127 61.111 0.00 0.00 0.00 6.13
887 896 2.102420 TGACACATGACTCTGTTTCCGT 59.898 45.455 0.00 0.00 0.00 4.69
888 897 2.733552 CTGACACATGACTCTGTTTCCG 59.266 50.000 0.00 0.00 0.00 4.30
889 898 3.496130 CACTGACACATGACTCTGTTTCC 59.504 47.826 0.00 0.00 0.00 3.13
890 899 4.122776 ACACTGACACATGACTCTGTTTC 58.877 43.478 0.00 0.00 0.00 2.78
891 900 4.142609 ACACTGACACATGACTCTGTTT 57.857 40.909 0.00 0.00 0.00 2.83
892 901 3.827008 ACACTGACACATGACTCTGTT 57.173 42.857 0.00 0.00 0.00 3.16
893 902 3.891977 ACTACACTGACACATGACTCTGT 59.108 43.478 0.00 0.43 0.00 3.41
894 903 4.511617 ACTACACTGACACATGACTCTG 57.488 45.455 0.00 0.00 0.00 3.35
895 904 5.317808 AGTACTACACTGACACATGACTCT 58.682 41.667 0.00 0.00 35.62 3.24
896 905 5.630661 AGTACTACACTGACACATGACTC 57.369 43.478 0.00 0.00 35.62 3.36
897 906 6.239396 ACTAGTACTACACTGACACATGACT 58.761 40.000 0.00 0.00 38.24 3.41
898 907 6.497785 ACTAGTACTACACTGACACATGAC 57.502 41.667 0.00 0.00 38.24 3.06
899 908 7.148289 GCTTACTAGTACTACACTGACACATGA 60.148 40.741 0.91 0.00 38.24 3.07
900 909 6.967767 GCTTACTAGTACTACACTGACACATG 59.032 42.308 0.91 0.00 38.24 3.21
901 910 6.657966 TGCTTACTAGTACTACACTGACACAT 59.342 38.462 0.91 0.00 38.24 3.21
902 911 5.999600 TGCTTACTAGTACTACACTGACACA 59.000 40.000 0.91 0.00 38.24 3.72
903 912 6.149142 AGTGCTTACTAGTACTACACTGACAC 59.851 42.308 21.93 12.77 44.27 3.67
904 913 6.236409 AGTGCTTACTAGTACTACACTGACA 58.764 40.000 21.93 3.45 44.27 3.58
905 914 6.740411 AGTGCTTACTAGTACTACACTGAC 57.260 41.667 21.93 4.47 44.27 3.51
906 915 6.349115 GCAAGTGCTTACTAGTACTACACTGA 60.349 42.308 22.73 0.84 45.18 3.41
907 916 5.800941 GCAAGTGCTTACTAGTACTACACTG 59.199 44.000 22.73 18.54 45.18 3.66
908 917 5.391736 CGCAAGTGCTTACTAGTACTACACT 60.392 44.000 18.99 18.99 45.18 3.55
909 918 4.792189 CGCAAGTGCTTACTAGTACTACAC 59.208 45.833 16.14 16.14 45.18 2.90
910 919 4.978186 CGCAAGTGCTTACTAGTACTACA 58.022 43.478 0.91 0.00 45.18 2.74
931 940 5.608676 TGACTTCTAGTTCTACACTGACG 57.391 43.478 0.00 0.00 35.97 4.35
971 980 5.183014 TGAGCATGCATTGAGATTTGATC 57.817 39.130 21.98 4.07 0.00 2.92
992 1001 6.910536 AGACTTTAATTAACATCGAGCCTG 57.089 37.500 0.00 0.00 0.00 4.85
1038 1048 4.020662 GGAGTGTGGAGAAGAAGACTTGAT 60.021 45.833 0.00 0.00 36.39 2.57
1059 1071 6.139679 AGAACCTGATTTGATTTGTAGGGA 57.860 37.500 0.00 0.00 0.00 4.20
1236 1249 5.169295 AGCAGTAAAGTAGCCGTTAAAGAG 58.831 41.667 0.00 0.00 0.00 2.85
1254 1268 4.096984 GCTAGTTAATGATGGCAAAGCAGT 59.903 41.667 0.00 0.00 0.00 4.40
1256 1270 4.272489 AGCTAGTTAATGATGGCAAAGCA 58.728 39.130 0.00 0.00 0.00 3.91
1377 1470 1.744741 GCTGGAGCTGCTGTTCCTC 60.745 63.158 23.46 13.52 43.03 3.71
1393 1486 3.376078 CGCTGCATTTGGGGTGCT 61.376 61.111 0.00 0.00 42.92 4.40
1411 1504 1.355971 CAATGTACCGGGTCTGAACG 58.644 55.000 6.32 0.00 0.00 3.95
1419 1512 2.364632 TCAGAAATGCAATGTACCGGG 58.635 47.619 6.32 0.00 0.00 5.73
1456 1558 2.109425 AGCTGGGACGAAATACAACC 57.891 50.000 0.00 0.00 0.00 3.77
1493 1595 4.514066 ACACTCTAAAAACCATCGGTTGAC 59.486 41.667 0.00 0.00 46.20 3.18
1498 1600 5.109903 CCTCTACACTCTAAAAACCATCGG 58.890 45.833 0.00 0.00 0.00 4.18
1500 1602 8.092687 TGTAACCTCTACACTCTAAAAACCATC 58.907 37.037 0.00 0.00 0.00 3.51
1508 1612 5.537295 TGCTGTTGTAACCTCTACACTCTAA 59.463 40.000 0.00 0.00 0.00 2.10
1524 1628 2.435372 TCAGGGTTTCTTGCTGTTGT 57.565 45.000 0.00 0.00 0.00 3.32
1542 1646 0.176910 CTCTCCGCCCCTTCTTCTTC 59.823 60.000 0.00 0.00 0.00 2.87
1543 1647 1.268283 CCTCTCCGCCCCTTCTTCTT 61.268 60.000 0.00 0.00 0.00 2.52
1544 1648 1.687493 CCTCTCCGCCCCTTCTTCT 60.687 63.158 0.00 0.00 0.00 2.85
1714 1834 1.672881 GAAACATGATCCCTTCAGGCG 59.327 52.381 0.00 0.00 39.78 5.52
1716 1836 5.655532 AGAAATGAAACATGATCCCTTCAGG 59.344 40.000 0.00 0.00 41.88 3.86
1891 2074 0.243907 AACTGATGACCACGGAGTCG 59.756 55.000 3.10 0.00 41.61 4.18
1892 2075 1.546476 AGAACTGATGACCACGGAGTC 59.454 52.381 0.47 0.47 41.61 3.36
1929 2112 1.207570 GATGACCATGGCATTGGCAAA 59.792 47.619 17.47 1.63 42.43 3.68
1930 2113 0.825410 GATGACCATGGCATTGGCAA 59.175 50.000 17.47 0.68 42.43 4.52
1931 2114 0.324460 TGATGACCATGGCATTGGCA 60.324 50.000 15.86 15.86 43.71 4.92
1932 2115 0.387929 CTGATGACCATGGCATTGGC 59.612 55.000 13.04 6.66 40.68 4.52
1933 2116 1.771565 ACTGATGACCATGGCATTGG 58.228 50.000 13.04 13.96 42.82 3.16
2243 2728 1.820581 GTAGTCATAGGGCGCCACA 59.179 57.895 30.85 15.98 0.00 4.17
2379 2879 1.167851 ACCAATGCATCCACAACTCG 58.832 50.000 0.00 0.00 0.00 4.18
2380 2880 2.950433 CAACCAATGCATCCACAACTC 58.050 47.619 0.00 0.00 0.00 3.01
2410 2916 0.463204 CATGCCTCCTGACGATGTCT 59.537 55.000 0.00 0.00 33.15 3.41
2419 2925 3.414193 TCCAGCCCATGCCTCCTG 61.414 66.667 0.00 0.00 38.69 3.86
2449 2955 2.847234 TTGGTCGTGTCCAGCCCT 60.847 61.111 0.00 0.00 38.80 5.19
2798 5078 8.150827 ACCTGCATCCATAATATACACATACT 57.849 34.615 0.00 0.00 0.00 2.12
2921 5443 8.459635 AGATCAGATGAGTGAAAAATGTCAATG 58.540 33.333 0.00 0.00 0.00 2.82
2938 5461 6.924612 ACTCGATCTTCATTTCAGATCAGATG 59.075 38.462 9.90 0.00 44.90 2.90
2939 5462 6.924612 CACTCGATCTTCATTTCAGATCAGAT 59.075 38.462 9.90 0.00 44.90 2.90
3119 5666 0.404040 TTCGGGATCCTGCCAAGTTT 59.596 50.000 16.48 0.00 0.00 2.66
3200 5747 8.265055 TCGAGAATAATTCAAGAATTACCTGGT 58.735 33.333 15.31 4.05 43.54 4.00
3213 5760 9.464714 GAAGCTTAGTACATCGAGAATAATTCA 57.535 33.333 0.00 0.00 0.00 2.57
3235 5782 1.931906 TGAGTGATCGAGCATGAAGC 58.068 50.000 6.66 0.00 46.19 3.86
3253 5800 4.650734 AGAGAAAAGGAGGAGAGCTTTTG 58.349 43.478 0.00 0.00 0.00 2.44
3277 5863 6.040842 CCTTTTTCTTTCTCACCCTGAATGAA 59.959 38.462 0.00 0.00 36.49 2.57
3355 5944 9.672086 CGAACATACAAAATAAGGACAAAAGAA 57.328 29.630 0.00 0.00 0.00 2.52
3356 5945 8.842280 ACGAACATACAAAATAAGGACAAAAGA 58.158 29.630 0.00 0.00 0.00 2.52
3357 5946 9.458374 AACGAACATACAAAATAAGGACAAAAG 57.542 29.630 0.00 0.00 0.00 2.27
3370 5959 8.610248 TCCTTCTTCATTAACGAACATACAAA 57.390 30.769 0.00 0.00 0.00 2.83
3371 5960 8.610248 TTCCTTCTTCATTAACGAACATACAA 57.390 30.769 0.00 0.00 0.00 2.41
3372 5961 8.786826 ATTCCTTCTTCATTAACGAACATACA 57.213 30.769 0.00 0.00 0.00 2.29
3395 6005 8.960591 AGCTGCTCACTATTAAACACAATAATT 58.039 29.630 0.00 0.00 0.00 1.40
3412 6078 3.005155 ACCTTCAAATTCAAGCTGCTCAC 59.995 43.478 1.00 0.00 0.00 3.51
3453 6173 8.178964 TCAACAAGTAACACACACAGTTATTTC 58.821 33.333 0.00 0.00 34.34 2.17
3771 7580 4.698304 CGAATAAAGGCAAAACTCCTACCA 59.302 41.667 0.00 0.00 32.65 3.25
3896 7705 8.067751 ACTATCACTCAACCGCACATATATAT 57.932 34.615 0.00 0.00 0.00 0.86
3897 7706 7.462571 ACTATCACTCAACCGCACATATATA 57.537 36.000 0.00 0.00 0.00 0.86
3898 7707 6.346477 ACTATCACTCAACCGCACATATAT 57.654 37.500 0.00 0.00 0.00 0.86
3899 7708 5.784578 ACTATCACTCAACCGCACATATA 57.215 39.130 0.00 0.00 0.00 0.86
3907 7716 5.812642 AGCAGATAAAACTATCACTCAACCG 59.187 40.000 0.00 0.00 0.00 4.44
3947 7756 1.618861 CTCACTTGAGGCTCGTAACG 58.381 55.000 10.42 0.00 38.48 3.18
3959 7768 2.171237 TCCCTCATGTATGCCTCACTTG 59.829 50.000 0.00 0.00 0.00 3.16
3991 7800 3.003173 TCAAGCCTCCTCACCCCG 61.003 66.667 0.00 0.00 0.00 5.73
4010 7822 2.526888 TACACCCTCGTCTTCCTCAT 57.473 50.000 0.00 0.00 0.00 2.90
4191 9869 1.009829 CTGCGACTAAGGTGGAATGC 58.990 55.000 0.00 0.00 0.00 3.56
4202 9880 0.528017 CTTCACTCCTGCTGCGACTA 59.472 55.000 0.00 0.00 0.00 2.59
4212 9890 2.363680 CAGTCATATCCGCTTCACTCCT 59.636 50.000 0.00 0.00 0.00 3.69
4238 9949 2.105993 ACGGCAAAAGGGTTAGACTTCT 59.894 45.455 0.00 0.00 0.00 2.85
4247 9958 0.472471 TGAGAAGACGGCAAAAGGGT 59.528 50.000 0.00 0.00 0.00 4.34
4249 9960 1.884235 ACTGAGAAGACGGCAAAAGG 58.116 50.000 0.00 0.00 0.00 3.11
4344 11317 2.541466 GGGAGGAAACAGAGGAGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
4358 11331 2.044555 CGCTGTGACTACGGGAGGA 61.045 63.158 0.00 0.00 33.62 3.71
4409 11382 2.250939 CGACAACTCCAGGCGCAAA 61.251 57.895 10.83 0.00 0.00 3.68
4493 11504 2.109463 CAACGACTACATCATCGACCG 58.891 52.381 0.00 0.00 40.86 4.79
4512 11543 1.026182 GTGCGGCTTCATCATCCACA 61.026 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.