Multiple sequence alignment - TraesCS7B01G474700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G474700 chr7B 100.000 3549 0 0 1 3549 730873746 730877294 0.000000e+00 6554.0
1 TraesCS7B01G474700 chr7B 93.571 1991 75 12 227 2197 686527237 686529194 0.000000e+00 2918.0
2 TraesCS7B01G474700 chr7B 88.660 582 62 3 2625 3204 686533472 686534051 0.000000e+00 706.0
3 TraesCS7B01G474700 chr7B 94.570 221 12 0 2327 2547 686529936 686530156 3.390000e-90 342.0
4 TraesCS7B01G474700 chr7B 76.178 764 111 46 992 1732 732056180 732055465 1.580000e-88 337.0
5 TraesCS7B01G474700 chr7B 91.928 223 15 3 1 221 686526529 686526750 3.440000e-80 309.0
6 TraesCS7B01G474700 chr7B 83.471 242 36 3 2310 2549 731993687 731993448 4.610000e-54 222.0
7 TraesCS7B01G474700 chr7B 83.471 242 36 3 2310 2549 732116819 732116580 4.610000e-54 222.0
8 TraesCS7B01G474700 chr7B 76.225 408 63 22 992 1382 732349926 732350316 6.050000e-43 185.0
9 TraesCS7B01G474700 chr7B 90.361 83 4 3 2547 2628 686532693 686532772 4.850000e-19 106.0
10 TraesCS7B01G474700 chr7B 78.431 102 17 2 183 279 747243471 747243370 1.060000e-05 62.1
11 TraesCS7B01G474700 chr7B 80.000 85 12 2 184 263 656436657 656436741 1.380000e-04 58.4
12 TraesCS7B01G474700 chr7D 91.718 2113 98 29 546 2628 629214075 629212010 0.000000e+00 2861.0
13 TraesCS7B01G474700 chr7D 87.973 582 54 12 2625 3204 629211359 629210792 0.000000e+00 673.0
14 TraesCS7B01G474700 chr7D 90.698 86 8 0 401 486 176171801 176171716 8.050000e-22 115.0
15 TraesCS7B01G474700 chr7D 88.372 86 10 0 401 486 343752013 343751928 1.740000e-18 104.0
16 TraesCS7B01G474700 chr7D 82.569 109 17 2 2902 3008 90992051 90992159 1.050000e-15 95.3
17 TraesCS7B01G474700 chr7D 90.909 66 6 0 2902 2967 14585749 14585814 4.880000e-14 89.8
18 TraesCS7B01G474700 chr7D 79.612 103 20 1 2904 3005 485101207 485101309 4.910000e-09 73.1
19 TraesCS7B01G474700 chrUn 76.378 762 114 43 992 1732 88465371 88464655 2.030000e-92 350.0
20 TraesCS7B01G474700 chrUn 76.178 764 111 46 992 1732 160415926 160415211 1.580000e-88 337.0
21 TraesCS7B01G474700 chrUn 76.178 764 111 46 992 1732 294252447 294251732 1.580000e-88 337.0
22 TraesCS7B01G474700 chrUn 85.833 240 34 0 1493 1732 441199696 441199935 4.550000e-64 255.0
23 TraesCS7B01G474700 chrUn 85.000 240 36 0 1493 1732 160351178 160350939 9.840000e-61 244.0
24 TraesCS7B01G474700 chrUn 85.000 240 36 0 1493 1732 405423297 405423058 9.840000e-61 244.0
25 TraesCS7B01G474700 chrUn 82.937 252 37 5 2310 2558 88412482 88412234 4.610000e-54 222.0
26 TraesCS7B01G474700 chrUn 82.937 252 37 5 2310 2558 88464231 88463983 4.610000e-54 222.0
27 TraesCS7B01G474700 chrUn 83.471 242 36 3 2310 2549 300049431 300049670 4.610000e-54 222.0
28 TraesCS7B01G474700 chrUn 83.471 242 36 3 2310 2549 441200359 441200598 4.610000e-54 222.0
29 TraesCS7B01G474700 chrUn 76.011 371 59 18 992 1347 88413727 88413372 7.880000e-37 165.0
30 TraesCS7B01G474700 chrUn 76.011 371 59 18 992 1347 408500728 408500373 7.880000e-37 165.0
31 TraesCS7B01G474700 chrUn 74.074 351 59 19 992 1326 160351616 160351282 8.050000e-22 115.0
32 TraesCS7B01G474700 chrUn 88.235 85 9 1 402 486 35125963 35125880 2.250000e-17 100.0
33 TraesCS7B01G474700 chrUn 87.209 86 10 1 402 486 126734425 126734340 2.920000e-16 97.1
34 TraesCS7B01G474700 chrUn 93.846 65 2 2 420 483 418303962 418304025 2.920000e-16 97.1
35 TraesCS7B01G474700 chrUn 92.188 64 5 0 420 483 316201877 316201940 1.360000e-14 91.6
36 TraesCS7B01G474700 chr2A 84.120 233 33 4 2318 2548 54706320 54706090 4.610000e-54 222.0
37 TraesCS7B01G474700 chr2A 97.059 68 2 0 420 487 745552829 745552762 8.050000e-22 115.0
38 TraesCS7B01G474700 chr2A 85.321 109 14 2 378 486 4139325 4139219 1.040000e-20 111.0
39 TraesCS7B01G474700 chr2A 87.500 96 11 1 389 483 133985001 133985096 3.750000e-20 110.0
40 TraesCS7B01G474700 chr4B 90.588 85 8 0 402 486 659147158 659147074 2.900000e-21 113.0
41 TraesCS7B01G474700 chr4B 89.535 86 9 0 401 486 327529785 327529700 3.750000e-20 110.0
42 TraesCS7B01G474700 chr4B 88.235 85 10 0 402 486 668489913 668489829 6.270000e-18 102.0
43 TraesCS7B01G474700 chr3D 90.361 83 8 0 401 483 386613278 386613360 3.750000e-20 110.0
44 TraesCS7B01G474700 chr3D 87.356 87 11 0 401 487 414409770 414409684 2.250000e-17 100.0
45 TraesCS7B01G474700 chr3D 87.805 82 10 0 402 483 607095536 607095617 2.920000e-16 97.1
46 TraesCS7B01G474700 chr3D 86.747 83 11 0 401 483 142089760 142089842 3.770000e-15 93.5
47 TraesCS7B01G474700 chr6B 87.234 94 9 3 394 486 279086824 279086733 1.740000e-18 104.0
48 TraesCS7B01G474700 chr4A 89.157 83 9 0 401 483 537597920 537598002 1.740000e-18 104.0
49 TraesCS7B01G474700 chr4A 88.372 86 10 0 401 486 544888287 544888202 1.740000e-18 104.0
50 TraesCS7B01G474700 chr2D 89.157 83 9 0 401 483 74850816 74850898 1.740000e-18 104.0
51 TraesCS7B01G474700 chr2D 86.517 89 12 0 401 489 42402378 42402290 8.110000e-17 99.0
52 TraesCS7B01G474700 chr1D 96.774 62 2 0 420 481 462985128 462985067 1.740000e-18 104.0
53 TraesCS7B01G474700 chr1D 96.721 61 2 0 420 480 454453576 454453516 6.270000e-18 102.0
54 TraesCS7B01G474700 chr1D 87.209 86 11 0 402 487 481342895 481342980 8.110000e-17 99.0
55 TraesCS7B01G474700 chr1D 86.047 86 12 0 401 486 393480173 393480088 3.770000e-15 93.5
56 TraesCS7B01G474700 chr1B 87.778 90 10 1 394 483 453132492 453132580 1.740000e-18 104.0
57 TraesCS7B01G474700 chr1B 80.392 102 14 3 183 279 115753702 115753602 4.910000e-09 73.1
58 TraesCS7B01G474700 chr6A 89.024 82 9 0 402 483 26813437 26813518 6.270000e-18 102.0
59 TraesCS7B01G474700 chr5D 89.024 82 9 0 402 483 277238935 277239016 6.270000e-18 102.0
60 TraesCS7B01G474700 chr5D 87.209 86 11 0 401 486 495161474 495161389 8.110000e-17 99.0
61 TraesCS7B01G474700 chr5D 87.805 82 10 0 402 483 293405678 293405759 2.920000e-16 97.1
62 TraesCS7B01G474700 chr3A 85.567 97 13 1 390 486 697737766 697737671 2.250000e-17 100.0
63 TraesCS7B01G474700 chr1A 88.750 80 9 0 404 483 511009216 511009295 8.110000e-17 99.0
64 TraesCS7B01G474700 chr1A 86.441 59 8 0 221 279 47603370 47603312 8.220000e-07 65.8
65 TraesCS7B01G474700 chr4D 93.651 63 4 0 420 482 503109924 503109862 1.050000e-15 95.3
66 TraesCS7B01G474700 chr4D 86.747 83 11 0 401 483 446912536 446912618 3.770000e-15 93.5
67 TraesCS7B01G474700 chr4D 86.585 82 11 0 402 483 508673387 508673468 1.360000e-14 91.6
68 TraesCS7B01G474700 chr4D 97.059 34 1 0 2773 2806 323614841 323614874 1.380000e-04 58.4
69 TraesCS7B01G474700 chr6D 87.342 79 10 0 402 480 129165096 129165174 1.360000e-14 91.6
70 TraesCS7B01G474700 chr6D 94.737 57 3 0 420 476 460803734 460803678 4.880000e-14 89.8
71 TraesCS7B01G474700 chr6D 84.884 86 13 0 401 486 454735725 454735640 1.760000e-13 87.9
72 TraesCS7B01G474700 chr6D 85.366 82 12 0 402 483 264687175 264687256 6.310000e-13 86.1
73 TraesCS7B01G474700 chr6D 93.182 44 3 0 2907 2950 296674711 296674668 8.220000e-07 65.8
74 TraesCS7B01G474700 chr5B 82.353 102 13 2 183 279 69849159 69849260 2.270000e-12 84.2
75 TraesCS7B01G474700 chr3B 81.132 106 12 5 181 279 680430163 680430267 1.060000e-10 78.7
76 TraesCS7B01G474700 chr2B 80.583 103 13 3 183 279 110376062 110376163 4.910000e-09 73.1
77 TraesCS7B01G474700 chr7A 92.000 50 4 0 2919 2968 103402293 103402244 1.770000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G474700 chr7B 730873746 730877294 3548 False 6554.0 6554 100.0000 1 3549 1 chr7B.!!$F2 3548
1 TraesCS7B01G474700 chr7B 686526529 686534051 7522 False 876.2 2918 91.8180 1 3204 5 chr7B.!!$F4 3203
2 TraesCS7B01G474700 chr7B 732055465 732056180 715 True 337.0 337 76.1780 992 1732 1 chr7B.!!$R2 740
3 TraesCS7B01G474700 chr7D 629210792 629214075 3283 True 1767.0 2861 89.8455 546 3204 2 chr7D.!!$R3 2658
4 TraesCS7B01G474700 chrUn 160415211 160415926 715 True 337.0 337 76.1780 992 1732 1 chrUn.!!$R3 740
5 TraesCS7B01G474700 chrUn 294251732 294252447 715 True 337.0 337 76.1780 992 1732 1 chrUn.!!$R4 740
6 TraesCS7B01G474700 chrUn 88463983 88465371 1388 True 286.0 350 79.6575 992 2558 2 chrUn.!!$R8 1566
7 TraesCS7B01G474700 chrUn 441199696 441200598 902 False 238.5 255 84.6520 1493 2549 2 chrUn.!!$F4 1056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 136 2.708325 GGAGAACCATTCCCAGCTCTAT 59.292 50.0 0.0 0.0 35.97 1.98 F
1466 1991 1.271856 TGTCCCTGCCGAACTATCAA 58.728 50.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 2394 0.038744 CTTGGCCTTGGTCCTGTGAT 59.961 55.0 3.32 0.0 0.0 3.06 R
3350 7857 0.034337 GGTAGGTGAGGTTGCGACAA 59.966 55.0 6.39 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.863407 GAGCACTCCCCTAACCAAG 57.137 57.895 0.00 0.00 0.00 3.61
48 49 5.163322 TGCCAAAAAGACACATTTTCTCCAT 60.163 36.000 0.00 0.00 31.25 3.41
53 54 4.387026 AGACACATTTTCTCCATTCCCA 57.613 40.909 0.00 0.00 0.00 4.37
66 67 2.718609 CCATTCCCAGGAACCCATCTAT 59.281 50.000 0.07 0.00 36.91 1.98
106 108 3.689161 GCAAAAGCCCAAGTGAACTTTTT 59.311 39.130 7.92 0.00 39.62 1.94
134 136 2.708325 GGAGAACCATTCCCAGCTCTAT 59.292 50.000 0.00 0.00 35.97 1.98
143 146 5.280882 CCATTCCCAGCTCTATCCACAATAT 60.281 44.000 0.00 0.00 0.00 1.28
152 155 8.321353 CAGCTCTATCCACAATATATTGGGTTA 58.679 37.037 25.45 19.55 39.52 2.85
180 183 5.420725 TGGTATACTTGAAGCACATGAGT 57.579 39.130 0.00 0.00 0.00 3.41
209 212 8.750515 TTTCCAATCAGTATTGCTATCATCAA 57.249 30.769 0.00 0.00 41.06 2.57
243 727 3.640967 AGAAGCCAACAAAGCCATGTTAA 59.359 39.130 4.57 0.00 41.44 2.01
254 738 7.830739 ACAAAGCCATGTTAAAATCTCTAAGG 58.169 34.615 0.00 0.00 0.00 2.69
294 778 6.921307 CCCACCAAACATTGACTTAGTTAAAC 59.079 38.462 0.00 0.00 0.00 2.01
334 818 3.953612 TGGATTCAGTTTATGCACCATCC 59.046 43.478 0.00 0.00 0.00 3.51
335 819 4.210331 GGATTCAGTTTATGCACCATCCT 58.790 43.478 0.00 0.00 0.00 3.24
336 820 4.646492 GGATTCAGTTTATGCACCATCCTT 59.354 41.667 0.00 0.00 0.00 3.36
356 840 5.866207 CCTTTTGGAAACAGAGGTAGTAGT 58.134 41.667 0.00 0.00 44.54 2.73
400 884 4.082679 ACAACAAGACGTAAGCTAGAGAGG 60.083 45.833 0.00 0.00 45.62 3.69
424 908 6.958192 GGTACTCCCTCCCTTATGTCATATAA 59.042 42.308 0.00 0.00 0.00 0.98
542 1046 7.001073 ACTTGGAAGAAAAGACAAATCTAGCT 58.999 34.615 0.00 0.00 33.57 3.32
551 1055 9.600646 GAAAAGACAAATCTAGCTGTAAACTTC 57.399 33.333 0.00 0.00 33.57 3.01
787 1292 6.001449 TCCTAGTTTGATTGGTTCCCATAG 57.999 41.667 0.00 0.00 31.53 2.23
857 1362 2.920524 TGAAGGAGAGAGCTACGTAGG 58.079 52.381 23.47 6.23 0.00 3.18
878 1383 3.372060 GTTGCCAGCTTTGTGAAGTTAC 58.628 45.455 0.00 0.00 35.25 2.50
1157 1664 3.706373 GCAGCCTCCCCTGTTCGA 61.706 66.667 0.00 0.00 35.28 3.71
1158 1665 3.036429 GCAGCCTCCCCTGTTCGAT 62.036 63.158 0.00 0.00 35.28 3.59
1159 1666 1.686325 GCAGCCTCCCCTGTTCGATA 61.686 60.000 0.00 0.00 35.28 2.92
1201 1708 5.890110 TCAATTGTAAAGCTCGATCGATC 57.110 39.130 19.78 15.10 0.00 3.69
1274 1796 2.028112 GCACTGGTACAAGGACATGAGA 60.028 50.000 0.00 0.00 38.70 3.27
1358 1880 1.676635 GCTGGCCATCAAGCACTCA 60.677 57.895 5.51 0.00 0.00 3.41
1398 1920 1.686052 TGAGCACCAACCAAACCAATC 59.314 47.619 0.00 0.00 0.00 2.67
1466 1991 1.271856 TGTCCCTGCCGAACTATCAA 58.728 50.000 0.00 0.00 0.00 2.57
1508 2058 5.425217 TGAATCTTTGCAGGTAGATCTGGTA 59.575 40.000 5.18 0.00 35.43 3.25
1749 2299 4.742201 CCGACGCTCCACCACCTG 62.742 72.222 0.00 0.00 0.00 4.00
1751 2301 4.314440 GACGCTCCACCACCTGCA 62.314 66.667 0.00 0.00 0.00 4.41
1752 2302 4.320456 ACGCTCCACCACCTGCAG 62.320 66.667 6.78 6.78 0.00 4.41
1754 2304 4.648626 GCTCCACCACCTGCAGCA 62.649 66.667 8.66 0.00 0.00 4.41
1755 2305 2.359602 CTCCACCACCTGCAGCAG 60.360 66.667 16.23 16.23 0.00 4.24
1756 2306 4.648626 TCCACCACCTGCAGCAGC 62.649 66.667 17.81 0.00 42.57 5.25
1758 2308 4.655647 CACCACCTGCAGCAGCCT 62.656 66.667 17.81 0.53 41.13 4.58
1759 2309 2.930019 ACCACCTGCAGCAGCCTA 60.930 61.111 17.81 0.00 41.13 3.93
1760 2310 2.437359 CCACCTGCAGCAGCCTAC 60.437 66.667 17.81 0.00 41.13 3.18
1761 2311 2.816958 CACCTGCAGCAGCCTACG 60.817 66.667 17.81 5.46 41.13 3.51
1762 2312 4.087892 ACCTGCAGCAGCCTACGG 62.088 66.667 17.81 5.68 41.13 4.02
1763 2313 4.845580 CCTGCAGCAGCCTACGGG 62.846 72.222 17.81 0.00 41.13 5.28
2245 2803 6.598064 ACCCTGTAAGCTTATAACATGTTCAC 59.402 38.462 15.85 1.36 0.00 3.18
2251 2809 6.657836 AGCTTATAACATGTTCACCGTTAC 57.342 37.500 15.85 0.00 0.00 2.50
2588 6363 2.991540 GCCAGGGCCGCTTCTTTT 60.992 61.111 0.00 0.00 34.56 2.27
2611 6386 1.433837 GCCACCGTTGTGTTTCTCGT 61.434 55.000 0.00 0.00 41.09 4.18
2612 6387 1.855513 CCACCGTTGTGTTTCTCGTA 58.144 50.000 0.00 0.00 41.09 3.43
2613 6388 1.523934 CCACCGTTGTGTTTCTCGTAC 59.476 52.381 0.00 0.00 41.09 3.67
2645 7151 2.910977 AGGAATACCGTCTCCCAAGTTT 59.089 45.455 0.00 0.00 41.83 2.66
2652 7158 2.350522 CGTCTCCCAAGTTTGATCCTG 58.649 52.381 0.00 0.00 0.00 3.86
2656 7162 3.140144 TCTCCCAAGTTTGATCCTGGTTT 59.860 43.478 0.00 0.00 0.00 3.27
2673 7179 1.654105 GTTTCGATGGTGTGTCTAGCG 59.346 52.381 0.00 0.00 37.75 4.26
2696 7202 2.176148 TGTCGGAGGATGTATGGAGGTA 59.824 50.000 0.00 0.00 0.00 3.08
2734 7240 2.440409 GTGGGATTCTGTTGATGCTGT 58.560 47.619 0.00 0.00 0.00 4.40
2759 7265 1.499007 AGGTGGGTCTGTTTGGATGTT 59.501 47.619 0.00 0.00 0.00 2.71
2789 7295 4.330944 TCGTGTGTCTACAGGTTTGATT 57.669 40.909 0.00 0.00 41.97 2.57
2795 7301 6.260050 GTGTGTCTACAGGTTTGATTCTTTCA 59.740 38.462 0.00 0.00 37.52 2.69
2817 7323 9.869757 TTTCAATCTACGACTCTATTCATCAAA 57.130 29.630 0.00 0.00 0.00 2.69
2833 7339 2.867624 TCAAAGATGGTTGCTGCTCTT 58.132 42.857 0.00 0.00 0.00 2.85
2847 7353 1.591703 CTCTTGTGCGCTGGTCCTA 59.408 57.895 9.73 0.00 0.00 2.94
2861 7367 1.490574 GTCCTACTGGGTCTGAGCAT 58.509 55.000 9.30 0.00 36.25 3.79
2888 7394 9.614792 GATGACATCCCTACTTTTTACTACAAT 57.385 33.333 3.89 0.00 0.00 2.71
2905 7411 7.900782 ACTACAATAAGATTTGCGTAAGTGT 57.099 32.000 0.00 0.00 41.68 3.55
2914 7420 5.756347 AGATTTGCGTAAGTGTTTGTAGTCA 59.244 36.000 0.00 0.00 41.68 3.41
2957 7463 7.231115 GGACCTGGTTGTAATTTTTGTTACCTA 59.769 37.037 0.00 0.00 34.43 3.08
2968 7474 7.972832 ATTTTTGTTACCTATCGTGTTCTCA 57.027 32.000 0.00 0.00 0.00 3.27
2973 7479 3.444703 ACCTATCGTGTTCTCAGCATC 57.555 47.619 0.00 0.00 0.00 3.91
2987 7493 3.814625 TCAGCATCGCCATGGTTTATTA 58.185 40.909 14.67 0.00 38.76 0.98
2994 7500 5.749596 TCGCCATGGTTTATTATGAACAG 57.250 39.130 14.67 0.00 0.00 3.16
2995 7501 4.036262 TCGCCATGGTTTATTATGAACAGC 59.964 41.667 14.67 0.00 0.00 4.40
3036 7542 1.993956 TCAACTGTGGGGGTTTCATG 58.006 50.000 0.00 0.00 0.00 3.07
3041 7547 2.091333 ACTGTGGGGGTTTCATGTTTCT 60.091 45.455 0.00 0.00 0.00 2.52
3044 7550 2.820197 GTGGGGGTTTCATGTTTCTCTC 59.180 50.000 0.00 0.00 0.00 3.20
3064 7570 0.471780 TGAGCTCACCTTCCCAGTCA 60.472 55.000 13.74 0.00 0.00 3.41
3065 7571 0.687354 GAGCTCACCTTCCCAGTCAA 59.313 55.000 9.40 0.00 0.00 3.18
3079 7585 2.996621 CCAGTCAACGACTTCTTCATCC 59.003 50.000 0.00 0.00 41.37 3.51
3083 7589 4.082463 AGTCAACGACTTCTTCATCCTCTC 60.082 45.833 0.00 0.00 40.28 3.20
3088 7594 3.181480 CGACTTCTTCATCCTCTCCCTTC 60.181 52.174 0.00 0.00 0.00 3.46
3091 7597 2.103373 TCTTCATCCTCTCCCTTCGTG 58.897 52.381 0.00 0.00 0.00 4.35
3117 7623 1.452651 CCATGGCCACCTGCTACTG 60.453 63.158 8.16 0.00 40.92 2.74
3118 7624 2.117156 CATGGCCACCTGCTACTGC 61.117 63.158 8.16 0.00 40.92 4.40
3132 7638 3.198872 GCTACTGCAATTCTGGTAGTCC 58.801 50.000 9.50 0.00 39.41 3.85
3150 7656 3.000041 GTCCGTCAACATAGCATGTGAA 59.000 45.455 0.00 0.00 44.07 3.18
3163 7669 2.863704 GCATGTGAAGCAGTTCAAACCC 60.864 50.000 0.00 0.00 44.44 4.11
3184 7691 2.652530 GCATGTGGCTGGTGTTGG 59.347 61.111 0.00 0.00 40.25 3.77
3194 7701 0.598065 CTGGTGTTGGGCTAACTTGC 59.402 55.000 14.99 5.34 40.05 4.01
3200 7707 0.392461 TTGGGCTAACTTGCGGCTAG 60.392 55.000 9.88 9.88 0.00 3.42
3227 7734 4.685169 TCTTTCGATTCACTCCAATTGC 57.315 40.909 0.00 0.00 0.00 3.56
3228 7735 3.440173 TCTTTCGATTCACTCCAATTGCC 59.560 43.478 0.00 0.00 0.00 4.52
3229 7736 2.787473 TCGATTCACTCCAATTGCCT 57.213 45.000 0.00 0.00 0.00 4.75
3230 7737 3.071874 TCGATTCACTCCAATTGCCTT 57.928 42.857 0.00 0.00 0.00 4.35
3231 7738 2.749076 TCGATTCACTCCAATTGCCTTG 59.251 45.455 0.00 0.00 34.42 3.61
3252 7759 4.367023 GTGCGGGACTGCGGTACA 62.367 66.667 10.84 0.00 37.81 2.90
3253 7760 4.367023 TGCGGGACTGCGGTACAC 62.367 66.667 10.84 1.30 37.81 2.90
3254 7761 4.367023 GCGGGACTGCGGTACACA 62.367 66.667 10.84 0.00 0.00 3.72
3255 7762 2.577059 CGGGACTGCGGTACACAT 59.423 61.111 10.84 0.00 0.00 3.21
3256 7763 1.518572 CGGGACTGCGGTACACATC 60.519 63.158 10.84 0.00 0.00 3.06
3257 7764 1.153429 GGGACTGCGGTACACATCC 60.153 63.158 10.84 0.00 0.00 3.51
3258 7765 1.153429 GGACTGCGGTACACATCCC 60.153 63.158 1.91 0.00 0.00 3.85
3259 7766 1.594833 GACTGCGGTACACATCCCA 59.405 57.895 0.00 0.00 0.00 4.37
3260 7767 0.739813 GACTGCGGTACACATCCCAC 60.740 60.000 0.00 0.00 0.00 4.61
3261 7768 1.192146 ACTGCGGTACACATCCCACT 61.192 55.000 0.00 0.00 0.00 4.00
3262 7769 0.740868 CTGCGGTACACATCCCACTG 60.741 60.000 0.00 0.00 0.00 3.66
3263 7770 2.106683 GCGGTACACATCCCACTGC 61.107 63.158 0.00 0.00 37.40 4.40
3264 7771 1.449601 CGGTACACATCCCACTGCC 60.450 63.158 0.00 0.00 0.00 4.85
3265 7772 1.682849 GGTACACATCCCACTGCCA 59.317 57.895 0.00 0.00 0.00 4.92
3266 7773 0.392998 GGTACACATCCCACTGCCAG 60.393 60.000 0.00 0.00 0.00 4.85
3267 7774 0.392998 GTACACATCCCACTGCCAGG 60.393 60.000 0.00 0.00 0.00 4.45
3268 7775 0.840288 TACACATCCCACTGCCAGGT 60.840 55.000 0.00 0.00 0.00 4.00
3269 7776 1.676635 CACATCCCACTGCCAGGTG 60.677 63.158 0.00 0.00 37.00 4.00
3270 7777 2.156098 ACATCCCACTGCCAGGTGT 61.156 57.895 0.00 0.00 35.63 4.16
3271 7778 1.676635 CATCCCACTGCCAGGTGTG 60.677 63.158 0.00 7.51 35.63 3.82
3272 7779 1.847506 ATCCCACTGCCAGGTGTGA 60.848 57.895 14.04 0.00 36.38 3.58
3273 7780 2.129555 ATCCCACTGCCAGGTGTGAC 62.130 60.000 14.04 0.00 36.38 3.67
3274 7781 2.281761 CCACTGCCAGGTGTGACC 60.282 66.667 14.04 0.00 38.99 4.02
3275 7782 2.666190 CACTGCCAGGTGTGACCG 60.666 66.667 8.51 0.00 44.90 4.79
3276 7783 3.941188 ACTGCCAGGTGTGACCGG 61.941 66.667 0.00 0.00 44.90 5.28
3277 7784 3.625897 CTGCCAGGTGTGACCGGA 61.626 66.667 9.46 0.00 44.90 5.14
3278 7785 3.596066 CTGCCAGGTGTGACCGGAG 62.596 68.421 9.46 0.00 44.90 4.63
3279 7786 3.311110 GCCAGGTGTGACCGGAGA 61.311 66.667 9.46 0.00 44.90 3.71
3280 7787 2.973899 CCAGGTGTGACCGGAGAG 59.026 66.667 9.46 0.00 44.90 3.20
3281 7788 2.262915 CAGGTGTGACCGGAGAGC 59.737 66.667 9.46 0.00 44.90 4.09
3282 7789 2.203640 AGGTGTGACCGGAGAGCA 60.204 61.111 9.46 0.00 44.90 4.26
3283 7790 2.048127 GGTGTGACCGGAGAGCAC 60.048 66.667 9.46 11.39 0.00 4.40
3284 7791 2.574955 GGTGTGACCGGAGAGCACT 61.575 63.158 9.46 0.00 33.83 4.40
3285 7792 1.080434 GTGTGACCGGAGAGCACTC 60.080 63.158 9.46 2.05 41.94 3.51
3286 7793 2.179517 GTGACCGGAGAGCACTCG 59.820 66.667 9.46 1.10 43.44 4.18
3287 7794 2.033602 TGACCGGAGAGCACTCGA 59.966 61.111 9.46 0.00 43.44 4.04
3288 7795 2.041115 TGACCGGAGAGCACTCGAG 61.041 63.158 9.46 11.84 43.44 4.04
3289 7796 2.034376 ACCGGAGAGCACTCGAGT 59.966 61.111 13.58 13.58 43.44 4.18
3302 7809 4.180496 CGAGTGCTTCGGTAACCC 57.820 61.111 3.67 0.00 45.54 4.11
3303 7810 1.590147 CGAGTGCTTCGGTAACCCT 59.410 57.895 3.67 0.00 45.54 4.34
3304 7811 0.813184 CGAGTGCTTCGGTAACCCTA 59.187 55.000 3.67 0.00 45.54 3.53
3305 7812 1.202268 CGAGTGCTTCGGTAACCCTAG 60.202 57.143 3.67 0.00 45.54 3.02
3306 7813 1.136500 GAGTGCTTCGGTAACCCTAGG 59.864 57.143 0.06 0.06 0.00 3.02
3307 7814 0.177373 GTGCTTCGGTAACCCTAGGG 59.823 60.000 27.36 27.36 42.03 3.53
3308 7815 0.041535 TGCTTCGGTAACCCTAGGGA 59.958 55.000 35.38 10.44 38.96 4.20
3309 7816 0.751452 GCTTCGGTAACCCTAGGGAG 59.249 60.000 35.38 19.57 38.96 4.30
3310 7817 0.751452 CTTCGGTAACCCTAGGGAGC 59.249 60.000 35.38 20.80 38.96 4.70
3311 7818 0.688749 TTCGGTAACCCTAGGGAGCC 60.689 60.000 35.38 27.18 38.96 4.70
3312 7819 1.382146 CGGTAACCCTAGGGAGCCA 60.382 63.158 35.38 12.73 38.96 4.75
3313 7820 1.683418 CGGTAACCCTAGGGAGCCAC 61.683 65.000 35.38 22.46 38.96 5.01
3314 7821 0.619543 GGTAACCCTAGGGAGCCACA 60.620 60.000 35.38 9.08 38.96 4.17
3315 7822 1.508256 GTAACCCTAGGGAGCCACAT 58.492 55.000 35.38 6.95 38.96 3.21
3316 7823 1.141053 GTAACCCTAGGGAGCCACATG 59.859 57.143 35.38 4.44 38.96 3.21
3317 7824 1.281925 AACCCTAGGGAGCCACATGG 61.282 60.000 35.38 3.62 38.96 3.66
3330 7837 3.547649 CCACATGGCGATGAATATGTG 57.452 47.619 16.26 3.33 46.06 3.21
3331 7838 3.547649 CACATGGCGATGAATATGTGG 57.452 47.619 16.26 0.00 43.98 4.17
3332 7839 1.881973 ACATGGCGATGAATATGTGGC 59.118 47.619 16.26 0.00 32.90 5.01
3333 7840 2.156917 CATGGCGATGAATATGTGGCT 58.843 47.619 1.91 0.00 0.00 4.75
3334 7841 1.882912 TGGCGATGAATATGTGGCTC 58.117 50.000 0.00 0.00 0.00 4.70
3335 7842 1.160137 GGCGATGAATATGTGGCTCC 58.840 55.000 0.00 0.00 0.00 4.70
3336 7843 1.160137 GCGATGAATATGTGGCTCCC 58.840 55.000 0.00 0.00 0.00 4.30
3337 7844 1.813513 CGATGAATATGTGGCTCCCC 58.186 55.000 0.00 0.00 0.00 4.81
3338 7845 1.072173 CGATGAATATGTGGCTCCCCA 59.928 52.381 0.00 0.00 39.32 4.96
3339 7846 2.290514 CGATGAATATGTGGCTCCCCAT 60.291 50.000 0.00 0.00 44.51 4.00
3340 7847 2.957402 TGAATATGTGGCTCCCCATC 57.043 50.000 0.00 0.00 44.51 3.51
3341 7848 2.421725 TGAATATGTGGCTCCCCATCT 58.578 47.619 0.00 0.00 44.51 2.90
3342 7849 2.785269 TGAATATGTGGCTCCCCATCTT 59.215 45.455 0.00 0.00 44.51 2.40
3343 7850 2.965671 ATATGTGGCTCCCCATCTTG 57.034 50.000 0.00 0.00 44.51 3.02
3344 7851 1.595311 TATGTGGCTCCCCATCTTGT 58.405 50.000 0.00 0.00 44.51 3.16
3345 7852 0.257039 ATGTGGCTCCCCATCTTGTC 59.743 55.000 0.00 0.00 44.51 3.18
3346 7853 0.842030 TGTGGCTCCCCATCTTGTCT 60.842 55.000 0.00 0.00 44.51 3.41
3347 7854 0.107459 GTGGCTCCCCATCTTGTCTC 60.107 60.000 0.00 0.00 44.51 3.36
3348 7855 0.547471 TGGCTCCCCATCTTGTCTCA 60.547 55.000 0.00 0.00 35.79 3.27
3349 7856 0.842635 GGCTCCCCATCTTGTCTCAT 59.157 55.000 0.00 0.00 0.00 2.90
3350 7857 1.213926 GGCTCCCCATCTTGTCTCATT 59.786 52.381 0.00 0.00 0.00 2.57
3351 7858 2.357569 GGCTCCCCATCTTGTCTCATTT 60.358 50.000 0.00 0.00 0.00 2.32
3352 7859 2.686915 GCTCCCCATCTTGTCTCATTTG 59.313 50.000 0.00 0.00 0.00 2.32
3353 7860 3.875369 GCTCCCCATCTTGTCTCATTTGT 60.875 47.826 0.00 0.00 0.00 2.83
3354 7861 3.944015 CTCCCCATCTTGTCTCATTTGTC 59.056 47.826 0.00 0.00 0.00 3.18
3355 7862 2.679837 CCCCATCTTGTCTCATTTGTCG 59.320 50.000 0.00 0.00 0.00 4.35
3356 7863 2.096496 CCCATCTTGTCTCATTTGTCGC 59.904 50.000 0.00 0.00 0.00 5.19
3357 7864 2.743664 CCATCTTGTCTCATTTGTCGCA 59.256 45.455 0.00 0.00 0.00 5.10
3358 7865 3.189080 CCATCTTGTCTCATTTGTCGCAA 59.811 43.478 0.00 0.00 0.00 4.85
3359 7866 3.878086 TCTTGTCTCATTTGTCGCAAC 57.122 42.857 0.00 0.00 0.00 4.17
3360 7867 2.548057 TCTTGTCTCATTTGTCGCAACC 59.452 45.455 0.00 0.00 0.00 3.77
3361 7868 2.254546 TGTCTCATTTGTCGCAACCT 57.745 45.000 0.00 0.00 0.00 3.50
3362 7869 2.143122 TGTCTCATTTGTCGCAACCTC 58.857 47.619 0.00 0.00 0.00 3.85
3363 7870 2.143122 GTCTCATTTGTCGCAACCTCA 58.857 47.619 0.00 0.00 0.00 3.86
3364 7871 2.096218 GTCTCATTTGTCGCAACCTCAC 60.096 50.000 0.00 0.00 0.00 3.51
3365 7872 1.197721 CTCATTTGTCGCAACCTCACC 59.802 52.381 0.00 0.00 0.00 4.02
3366 7873 1.202758 TCATTTGTCGCAACCTCACCT 60.203 47.619 0.00 0.00 0.00 4.00
3367 7874 2.037902 TCATTTGTCGCAACCTCACCTA 59.962 45.455 0.00 0.00 0.00 3.08
3368 7875 1.873698 TTTGTCGCAACCTCACCTAC 58.126 50.000 0.00 0.00 0.00 3.18
3369 7876 0.034337 TTGTCGCAACCTCACCTACC 59.966 55.000 0.00 0.00 0.00 3.18
3370 7877 1.116536 TGTCGCAACCTCACCTACCA 61.117 55.000 0.00 0.00 0.00 3.25
3371 7878 0.249398 GTCGCAACCTCACCTACCAT 59.751 55.000 0.00 0.00 0.00 3.55
3372 7879 0.981183 TCGCAACCTCACCTACCATT 59.019 50.000 0.00 0.00 0.00 3.16
3373 7880 1.086696 CGCAACCTCACCTACCATTG 58.913 55.000 0.00 0.00 0.00 2.82
3374 7881 0.811281 GCAACCTCACCTACCATTGC 59.189 55.000 0.00 0.00 36.07 3.56
3375 7882 1.463674 CAACCTCACCTACCATTGCC 58.536 55.000 0.00 0.00 0.00 4.52
3376 7883 0.331616 AACCTCACCTACCATTGCCC 59.668 55.000 0.00 0.00 0.00 5.36
3377 7884 0.844661 ACCTCACCTACCATTGCCCA 60.845 55.000 0.00 0.00 0.00 5.36
3378 7885 0.394352 CCTCACCTACCATTGCCCAC 60.394 60.000 0.00 0.00 0.00 4.61
3379 7886 0.327924 CTCACCTACCATTGCCCACA 59.672 55.000 0.00 0.00 0.00 4.17
3380 7887 0.037590 TCACCTACCATTGCCCACAC 59.962 55.000 0.00 0.00 0.00 3.82
3381 7888 0.251121 CACCTACCATTGCCCACACA 60.251 55.000 0.00 0.00 0.00 3.72
3382 7889 0.704076 ACCTACCATTGCCCACACAT 59.296 50.000 0.00 0.00 0.00 3.21
3383 7890 1.340991 ACCTACCATTGCCCACACATC 60.341 52.381 0.00 0.00 0.00 3.06
3384 7891 1.392589 CTACCATTGCCCACACATCC 58.607 55.000 0.00 0.00 0.00 3.51
3385 7892 0.998928 TACCATTGCCCACACATCCT 59.001 50.000 0.00 0.00 0.00 3.24
3386 7893 0.612732 ACCATTGCCCACACATCCTG 60.613 55.000 0.00 0.00 0.00 3.86
3387 7894 1.324740 CCATTGCCCACACATCCTGG 61.325 60.000 0.00 0.00 0.00 4.45
3388 7895 0.612732 CATTGCCCACACATCCTGGT 60.613 55.000 0.00 0.00 0.00 4.00
3389 7896 0.323725 ATTGCCCACACATCCTGGTC 60.324 55.000 0.00 0.00 0.00 4.02
3390 7897 2.044946 GCCCACACATCCTGGTCC 60.045 66.667 0.00 0.00 0.00 4.46
3391 7898 2.268920 CCCACACATCCTGGTCCG 59.731 66.667 0.00 0.00 0.00 4.79
3392 7899 2.268920 CCACACATCCTGGTCCGG 59.731 66.667 0.00 0.00 0.00 5.14
3393 7900 2.268920 CACACATCCTGGTCCGGG 59.731 66.667 10.99 10.99 0.00 5.73
3394 7901 2.203938 ACACATCCTGGTCCGGGT 60.204 61.111 16.88 1.30 0.00 5.28
3395 7902 2.268920 CACATCCTGGTCCGGGTG 59.731 66.667 16.88 15.45 0.00 4.61
3396 7903 3.717294 ACATCCTGGTCCGGGTGC 61.717 66.667 16.88 0.00 0.00 5.01
3397 7904 3.402681 CATCCTGGTCCGGGTGCT 61.403 66.667 16.88 0.16 0.00 4.40
3398 7905 3.083997 ATCCTGGTCCGGGTGCTC 61.084 66.667 16.88 0.00 0.00 4.26
3401 7908 4.742201 CTGGTCCGGGTGCTCGTG 62.742 72.222 0.00 0.00 0.00 4.35
3404 7911 4.736896 GTCCGGGTGCTCGTGGAC 62.737 72.222 0.00 10.93 43.60 4.02
3413 7920 4.803426 CTCGTGGACCAGCCGCTC 62.803 72.222 0.00 0.00 45.27 5.03
3419 7926 4.767255 GACCAGCCGCTCCACCTG 62.767 72.222 0.00 0.00 0.00 4.00
3421 7928 3.790437 CCAGCCGCTCCACCTGAT 61.790 66.667 0.00 0.00 0.00 2.90
3422 7929 2.270205 CAGCCGCTCCACCTGATT 59.730 61.111 0.00 0.00 0.00 2.57
3423 7930 1.817099 CAGCCGCTCCACCTGATTC 60.817 63.158 0.00 0.00 0.00 2.52
3424 7931 2.268920 GCCGCTCCACCTGATTCA 59.731 61.111 0.00 0.00 0.00 2.57
3425 7932 1.153086 GCCGCTCCACCTGATTCAT 60.153 57.895 0.00 0.00 0.00 2.57
3426 7933 0.749454 GCCGCTCCACCTGATTCATT 60.749 55.000 0.00 0.00 0.00 2.57
3427 7934 1.019673 CCGCTCCACCTGATTCATTG 58.980 55.000 0.00 0.00 0.00 2.82
3428 7935 1.019673 CGCTCCACCTGATTCATTGG 58.980 55.000 7.77 7.77 0.00 3.16
3429 7936 1.679944 CGCTCCACCTGATTCATTGGT 60.680 52.381 12.10 3.66 33.87 3.67
3430 7937 2.019984 GCTCCACCTGATTCATTGGTC 58.980 52.381 12.10 4.89 30.72 4.02
3431 7938 2.648059 CTCCACCTGATTCATTGGTCC 58.352 52.381 12.10 0.00 30.72 4.46
3432 7939 1.991813 TCCACCTGATTCATTGGTCCA 59.008 47.619 12.10 0.00 30.72 4.02
3433 7940 2.094675 CCACCTGATTCATTGGTCCAC 58.905 52.381 0.00 0.00 30.72 4.02
3434 7941 2.291153 CCACCTGATTCATTGGTCCACT 60.291 50.000 0.00 0.00 30.72 4.00
3435 7942 2.751259 CACCTGATTCATTGGTCCACTG 59.249 50.000 2.77 2.77 30.72 3.66
3436 7943 1.747355 CCTGATTCATTGGTCCACTGC 59.253 52.381 4.33 0.00 0.00 4.40
3437 7944 2.619849 CCTGATTCATTGGTCCACTGCT 60.620 50.000 4.33 0.00 0.00 4.24
3438 7945 3.087031 CTGATTCATTGGTCCACTGCTT 58.913 45.455 4.33 0.00 0.00 3.91
3439 7946 4.264253 CTGATTCATTGGTCCACTGCTTA 58.736 43.478 4.33 0.00 0.00 3.09
3440 7947 4.009675 TGATTCATTGGTCCACTGCTTAC 58.990 43.478 4.33 0.00 0.00 2.34
3441 7948 2.489938 TCATTGGTCCACTGCTTACC 57.510 50.000 4.33 0.00 0.00 2.85
3442 7949 1.086696 CATTGGTCCACTGCTTACCG 58.913 55.000 0.00 0.00 35.98 4.02
3443 7950 0.676782 ATTGGTCCACTGCTTACCGC 60.677 55.000 0.00 0.00 35.98 5.68
3444 7951 1.764571 TTGGTCCACTGCTTACCGCT 61.765 55.000 0.00 0.00 40.11 5.52
3445 7952 1.003718 GGTCCACTGCTTACCGCTT 60.004 57.895 0.00 0.00 40.11 4.68
3446 7953 1.298859 GGTCCACTGCTTACCGCTTG 61.299 60.000 0.00 0.00 40.11 4.01
3447 7954 0.602905 GTCCACTGCTTACCGCTTGT 60.603 55.000 0.00 0.00 40.11 3.16
3448 7955 0.320421 TCCACTGCTTACCGCTTGTC 60.320 55.000 0.00 0.00 40.11 3.18
3449 7956 1.298859 CCACTGCTTACCGCTTGTCC 61.299 60.000 0.00 0.00 40.11 4.02
3450 7957 0.602638 CACTGCTTACCGCTTGTCCA 60.603 55.000 0.00 0.00 40.11 4.02
3451 7958 0.324943 ACTGCTTACCGCTTGTCCAT 59.675 50.000 0.00 0.00 40.11 3.41
3452 7959 1.009829 CTGCTTACCGCTTGTCCATC 58.990 55.000 0.00 0.00 40.11 3.51
3453 7960 0.739462 TGCTTACCGCTTGTCCATCG 60.739 55.000 0.00 0.00 40.11 3.84
3455 7962 1.429148 CTTACCGCTTGTCCATCGGC 61.429 60.000 7.97 0.00 46.49 5.54
3456 7963 2.862674 TTACCGCTTGTCCATCGGCC 62.863 60.000 0.00 0.00 46.49 6.13
3458 7965 4.776322 CGCTTGTCCATCGGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
3459 7966 3.134127 GCTTGTCCATCGGCCCAC 61.134 66.667 0.00 0.00 0.00 4.61
3460 7967 2.819595 CTTGTCCATCGGCCCACG 60.820 66.667 0.00 0.00 46.11 4.94
3461 7968 4.402528 TTGTCCATCGGCCCACGG 62.403 66.667 0.00 0.00 44.45 4.94
3482 7989 4.896829 CCCCTCCTCGCGCTCCTA 62.897 72.222 5.56 0.00 0.00 2.94
3483 7990 3.597728 CCCTCCTCGCGCTCCTAC 61.598 72.222 5.56 0.00 0.00 3.18
3484 7991 2.829003 CCTCCTCGCGCTCCTACA 60.829 66.667 5.56 0.00 0.00 2.74
3485 7992 2.196925 CCTCCTCGCGCTCCTACAT 61.197 63.158 5.56 0.00 0.00 2.29
3486 7993 1.284408 CTCCTCGCGCTCCTACATC 59.716 63.158 5.56 0.00 0.00 3.06
3487 7994 1.152943 TCCTCGCGCTCCTACATCT 60.153 57.895 5.56 0.00 0.00 2.90
3488 7995 1.167155 TCCTCGCGCTCCTACATCTC 61.167 60.000 5.56 0.00 0.00 2.75
3489 7996 1.169661 CCTCGCGCTCCTACATCTCT 61.170 60.000 5.56 0.00 0.00 3.10
3490 7997 0.040514 CTCGCGCTCCTACATCTCTG 60.041 60.000 5.56 0.00 0.00 3.35
3491 7998 0.748367 TCGCGCTCCTACATCTCTGT 60.748 55.000 5.56 0.00 39.49 3.41
3492 7999 0.945099 CGCGCTCCTACATCTCTGTA 59.055 55.000 5.56 0.00 36.79 2.74
3493 8000 1.334239 CGCGCTCCTACATCTCTGTAC 60.334 57.143 5.56 0.00 36.79 2.90
3494 8001 1.001158 GCGCTCCTACATCTCTGTACC 60.001 57.143 0.00 0.00 36.79 3.34
3495 8002 1.609555 CGCTCCTACATCTCTGTACCC 59.390 57.143 0.00 0.00 36.79 3.69
3496 8003 1.964933 GCTCCTACATCTCTGTACCCC 59.035 57.143 0.00 0.00 36.79 4.95
3497 8004 2.425102 GCTCCTACATCTCTGTACCCCT 60.425 54.545 0.00 0.00 36.79 4.79
3498 8005 3.492337 CTCCTACATCTCTGTACCCCTC 58.508 54.545 0.00 0.00 36.79 4.30
3499 8006 2.856864 TCCTACATCTCTGTACCCCTCA 59.143 50.000 0.00 0.00 36.79 3.86
3500 8007 3.117474 TCCTACATCTCTGTACCCCTCAG 60.117 52.174 0.00 0.00 36.79 3.35
3501 8008 2.166907 ACATCTCTGTACCCCTCAGG 57.833 55.000 0.00 0.00 43.78 3.86
3502 8009 0.755686 CATCTCTGTACCCCTCAGGC 59.244 60.000 0.00 0.00 40.58 4.85
3503 8010 0.639392 ATCTCTGTACCCCTCAGGCT 59.361 55.000 0.00 0.00 40.58 4.58
3504 8011 0.324738 TCTCTGTACCCCTCAGGCTG 60.325 60.000 8.58 8.58 40.58 4.85
3505 8012 1.306141 TCTGTACCCCTCAGGCTGG 60.306 63.158 15.73 5.31 40.58 4.85
3506 8013 1.613630 CTGTACCCCTCAGGCTGGT 60.614 63.158 15.73 7.10 40.58 4.00
3507 8014 1.151899 TGTACCCCTCAGGCTGGTT 60.152 57.895 15.73 0.00 40.58 3.67
3508 8015 0.117541 TGTACCCCTCAGGCTGGTTA 59.882 55.000 15.73 0.00 40.58 2.85
3509 8016 1.274184 TGTACCCCTCAGGCTGGTTAT 60.274 52.381 15.73 0.00 40.58 1.89
3510 8017 2.022820 TGTACCCCTCAGGCTGGTTATA 60.023 50.000 15.73 0.00 40.58 0.98
3511 8018 2.280308 ACCCCTCAGGCTGGTTATAA 57.720 50.000 15.73 0.00 40.58 0.98
3512 8019 2.789219 ACCCCTCAGGCTGGTTATAAT 58.211 47.619 15.73 0.00 40.58 1.28
3513 8020 2.443255 ACCCCTCAGGCTGGTTATAATG 59.557 50.000 15.73 0.00 40.58 1.90
3514 8021 2.711009 CCCCTCAGGCTGGTTATAATGA 59.289 50.000 15.73 0.00 0.00 2.57
3515 8022 3.138283 CCCCTCAGGCTGGTTATAATGAA 59.862 47.826 15.73 0.00 0.00 2.57
3516 8023 4.386312 CCCCTCAGGCTGGTTATAATGAAA 60.386 45.833 15.73 0.00 0.00 2.69
3517 8024 4.823989 CCCTCAGGCTGGTTATAATGAAAG 59.176 45.833 15.73 0.00 0.00 2.62
3518 8025 5.440610 CCTCAGGCTGGTTATAATGAAAGT 58.559 41.667 15.73 0.00 0.00 2.66
3519 8026 6.409234 CCCTCAGGCTGGTTATAATGAAAGTA 60.409 42.308 15.73 0.00 0.00 2.24
3520 8027 7.227156 CCTCAGGCTGGTTATAATGAAAGTAT 58.773 38.462 15.73 0.00 0.00 2.12
3521 8028 7.389053 CCTCAGGCTGGTTATAATGAAAGTATC 59.611 40.741 15.73 0.00 0.00 2.24
3522 8029 7.801104 TCAGGCTGGTTATAATGAAAGTATCA 58.199 34.615 15.73 0.00 43.67 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.832266 TGTCTTTTTGGCATGATACTTGGT 59.168 37.500 0.00 0.00 0.00 3.67
15 16 5.771469 TGTGTCTTTTTGGCATGATACTTG 58.229 37.500 0.00 0.00 30.58 3.16
18 19 7.599998 AGAAAATGTGTCTTTTTGGCATGATAC 59.400 33.333 0.00 0.00 30.58 2.24
48 49 5.734140 TCTTTTATAGATGGGTTCCTGGGAA 59.266 40.000 0.00 0.00 0.00 3.97
53 54 7.062957 CCAATGTCTTTTATAGATGGGTTCCT 58.937 38.462 0.00 0.00 34.79 3.36
66 67 2.237643 TGCTGCTGCCAATGTCTTTTA 58.762 42.857 13.47 0.00 38.71 1.52
134 136 9.087871 CCATTGATTAACCCAATATATTGTGGA 57.912 33.333 26.73 13.55 37.03 4.02
152 155 7.557358 TCATGTGCTTCAAGTATACCATTGATT 59.443 33.333 8.02 0.00 35.47 2.57
221 224 1.708341 ACATGGCTTTGTTGGCTTCT 58.292 45.000 0.00 0.00 0.00 2.85
222 225 2.531522 AACATGGCTTTGTTGGCTTC 57.468 45.000 0.00 0.00 38.37 3.86
223 226 4.414337 TTTAACATGGCTTTGTTGGCTT 57.586 36.364 14.09 0.00 40.00 4.35
224 227 4.414337 TTTTAACATGGCTTTGTTGGCT 57.586 36.364 14.09 0.00 40.00 4.75
225 228 4.996758 AGATTTTAACATGGCTTTGTTGGC 59.003 37.500 14.09 0.00 40.00 4.52
243 727 5.073144 TGAGTGTTCCCAACCTTAGAGATTT 59.927 40.000 0.00 0.00 0.00 2.17
254 738 3.505835 TGGGTTGAGTGTTCCCAAC 57.494 52.632 0.00 0.00 46.78 3.77
294 778 9.403110 CTGAATCCAAAAGTCAATGTTTCTAAG 57.597 33.333 0.00 0.00 0.00 2.18
300 784 9.480053 CATAAACTGAATCCAAAAGTCAATGTT 57.520 29.630 0.00 0.00 0.00 2.71
400 884 7.894364 TCTTATATGACATAAGGGAGGGAGTAC 59.106 40.741 0.00 0.00 33.60 2.73
458 942 8.425703 AGTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
486 970 2.389715 CCTCTATTCTCCGTGAAGGGT 58.610 52.381 0.00 0.00 41.52 4.34
551 1055 9.528018 AAATTTAATACAATTAGATGGGCAACG 57.472 29.630 0.00 0.00 37.60 4.10
857 1362 2.584492 AACTTCACAAAGCTGGCAAC 57.416 45.000 0.00 0.00 35.81 4.17
878 1383 3.365820 GGTTATCACGTACGGTTGACTTG 59.634 47.826 21.06 6.83 0.00 3.16
1176 1683 7.946655 ATCGATCGAGCTTTACAATTGAATA 57.053 32.000 23.84 0.00 0.00 1.75
1201 1708 3.173599 TGAAATACTAGAAACGCGACCG 58.826 45.455 15.93 0.00 41.14 4.79
1203 1710 6.677411 GTGAAATGAAATACTAGAAACGCGAC 59.323 38.462 15.93 3.56 0.00 5.19
1274 1796 3.865929 CTTCACCCTCGTGCTGCGT 62.866 63.158 0.00 0.00 40.04 5.24
1343 1865 1.364626 CGAGTGAGTGCTTGATGGCC 61.365 60.000 0.00 0.00 0.00 5.36
1358 1880 3.083997 GGATGGGACTGGCCGAGT 61.084 66.667 7.46 7.46 37.76 4.18
1398 1920 0.445436 GTCAAGAGCGGCACTGAATG 59.555 55.000 1.45 0.00 0.00 2.67
1449 1974 2.103094 CAGATTGATAGTTCGGCAGGGA 59.897 50.000 0.00 0.00 0.00 4.20
1739 2289 4.648626 GCTGCTGCAGGTGGTGGA 62.649 66.667 29.05 0.00 39.41 4.02
1741 2291 3.258228 TAGGCTGCTGCAGGTGGTG 62.258 63.158 29.05 5.87 41.91 4.17
1742 2292 2.930019 TAGGCTGCTGCAGGTGGT 60.930 61.111 29.05 4.15 41.91 4.16
1743 2293 2.437359 GTAGGCTGCTGCAGGTGG 60.437 66.667 29.05 7.02 41.91 4.61
1744 2294 2.816958 CGTAGGCTGCTGCAGGTG 60.817 66.667 29.05 7.40 41.91 4.00
1745 2295 4.087892 CCGTAGGCTGCTGCAGGT 62.088 66.667 29.05 3.88 46.14 4.00
1757 2307 2.806856 CTCGTCGTCGTCCCCGTAG 61.807 68.421 1.33 0.00 38.33 3.51
1758 2308 2.815211 CTCGTCGTCGTCCCCGTA 60.815 66.667 1.33 0.00 38.33 4.02
1759 2309 4.996434 ACTCGTCGTCGTCCCCGT 62.996 66.667 1.33 0.00 38.33 5.28
1760 2310 3.657835 GAACTCGTCGTCGTCCCCG 62.658 68.421 1.33 0.00 38.33 5.73
1761 2311 2.177778 GAACTCGTCGTCGTCCCC 59.822 66.667 1.33 0.00 38.33 4.81
1762 2312 2.202272 CGAACTCGTCGTCGTCCC 60.202 66.667 1.33 0.00 45.09 4.46
1773 2323 2.125793 GTGGTACCCGCCGAACTC 60.126 66.667 10.07 0.00 0.00 3.01
1812 2362 4.500568 GCCGTAGCTGAAACGCGC 62.501 66.667 5.73 0.00 39.00 6.86
1843 2393 1.281867 CTTGGCCTTGGTCCTGTGATA 59.718 52.381 3.32 0.00 0.00 2.15
1844 2394 0.038744 CTTGGCCTTGGTCCTGTGAT 59.961 55.000 3.32 0.00 0.00 3.06
1845 2395 1.455849 CTTGGCCTTGGTCCTGTGA 59.544 57.895 3.32 0.00 0.00 3.58
2002 2552 3.261580 TGATTATCTGTTGTCACCTGCG 58.738 45.455 0.00 0.00 0.00 5.18
2585 6360 1.433879 CACAACGGTGGCGGAAAAA 59.566 52.632 4.97 0.00 41.45 1.94
2611 6386 3.956199 CGGTATTCCTTGTGGGACTAGTA 59.044 47.826 0.00 0.00 45.03 1.82
2612 6387 2.764572 CGGTATTCCTTGTGGGACTAGT 59.235 50.000 0.00 0.00 45.03 2.57
2613 6388 2.764572 ACGGTATTCCTTGTGGGACTAG 59.235 50.000 0.00 0.00 45.03 2.57
2632 7138 2.350522 CAGGATCAAACTTGGGAGACG 58.649 52.381 0.00 0.00 0.00 4.18
2645 7151 1.628340 ACACCATCGAAACCAGGATCA 59.372 47.619 0.00 0.00 0.00 2.92
2652 7158 2.000447 GCTAGACACACCATCGAAACC 59.000 52.381 0.00 0.00 0.00 3.27
2656 7162 0.885879 AACGCTAGACACACCATCGA 59.114 50.000 0.00 0.00 0.00 3.59
2673 7179 2.224066 CCTCCATACATCCTCCGACAAC 60.224 54.545 0.00 0.00 0.00 3.32
2696 7202 1.673400 CACGAGATCAGACGGAGACAT 59.327 52.381 10.58 0.00 0.00 3.06
2734 7240 3.050089 TCCAAACAGACCCACCTAAGAA 58.950 45.455 0.00 0.00 0.00 2.52
2759 7265 2.355444 TGTAGACACACGAACGAAGACA 59.645 45.455 0.14 0.00 0.00 3.41
2789 7295 8.903820 TGATGAATAGAGTCGTAGATTGAAAGA 58.096 33.333 0.00 0.00 40.67 2.52
2795 7301 9.689976 CATCTTTGATGAATAGAGTCGTAGATT 57.310 33.333 1.64 0.00 40.67 2.40
2817 7323 1.531423 CACAAGAGCAGCAACCATCT 58.469 50.000 0.00 0.00 0.00 2.90
2833 7339 2.656646 CAGTAGGACCAGCGCACA 59.343 61.111 11.47 0.00 0.00 4.57
2847 7353 1.209019 GTCATCATGCTCAGACCCAGT 59.791 52.381 0.00 0.00 0.00 4.00
2861 7367 8.141298 TGTAGTAAAAAGTAGGGATGTCATCA 57.859 34.615 14.72 0.00 0.00 3.07
2888 7394 7.438757 TGACTACAAACACTTACGCAAATCTTA 59.561 33.333 0.00 0.00 0.00 2.10
2957 7463 0.807667 GGCGATGCTGAGAACACGAT 60.808 55.000 0.00 0.00 0.00 3.73
2968 7474 4.397420 TCATAATAAACCATGGCGATGCT 58.603 39.130 13.04 0.00 0.00 3.79
2973 7479 4.036734 AGCTGTTCATAATAAACCATGGCG 59.963 41.667 13.04 0.00 0.00 5.69
2987 7493 3.515602 AGAAACTTCCCAGCTGTTCAT 57.484 42.857 13.81 0.00 0.00 2.57
2994 7500 1.202940 ACCTGGAAGAAACTTCCCAGC 60.203 52.381 22.44 4.04 43.56 4.85
2995 7501 2.106511 TGACCTGGAAGAAACTTCCCAG 59.893 50.000 22.44 18.71 44.29 4.45
3036 7542 3.584834 GAAGGTGAGCTCAGAGAGAAAC 58.415 50.000 18.89 2.00 0.00 2.78
3041 7547 0.115152 TGGGAAGGTGAGCTCAGAGA 59.885 55.000 18.89 0.00 0.00 3.10
3044 7550 0.248843 GACTGGGAAGGTGAGCTCAG 59.751 60.000 18.89 5.13 0.00 3.35
3064 7570 2.498078 GGGAGAGGATGAAGAAGTCGTT 59.502 50.000 0.00 0.00 0.00 3.85
3065 7571 2.104170 GGGAGAGGATGAAGAAGTCGT 58.896 52.381 0.00 0.00 0.00 4.34
3079 7585 1.185618 TGTGGGTCACGAAGGGAGAG 61.186 60.000 0.00 0.00 37.14 3.20
3117 7623 2.380084 TGACGGACTACCAGAATTGC 57.620 50.000 0.00 0.00 35.59 3.56
3118 7624 3.659786 TGTTGACGGACTACCAGAATTG 58.340 45.455 0.00 0.00 35.59 2.32
3119 7625 4.553330 ATGTTGACGGACTACCAGAATT 57.447 40.909 0.00 0.00 35.59 2.17
3120 7626 4.441634 GCTATGTTGACGGACTACCAGAAT 60.442 45.833 0.00 0.00 35.59 2.40
3132 7638 2.416202 TGCTTCACATGCTATGTTGACG 59.584 45.455 0.00 0.00 42.70 4.35
3150 7656 1.531602 GCCCTGGGTTTGAACTGCT 60.532 57.895 15.56 0.00 0.00 4.24
3163 7669 3.066190 CACCAGCCACATGCCCTG 61.066 66.667 0.00 0.00 42.71 4.45
3184 7691 0.810426 GGACTAGCCGCAAGTTAGCC 60.810 60.000 0.00 0.00 0.00 3.93
3205 7712 9.441077 CAAGGCAATTGGAGTGAATCGAAAGAT 62.441 40.741 7.72 0.00 43.50 2.40
3206 7713 8.224965 CAAGGCAATTGGAGTGAATCGAAAGA 62.225 42.308 7.72 0.00 38.96 2.52
3207 7714 3.441572 AGGCAATTGGAGTGAATCGAAAG 59.558 43.478 7.72 0.00 0.00 2.62
3208 7715 3.420893 AGGCAATTGGAGTGAATCGAAA 58.579 40.909 7.72 0.00 0.00 3.46
3209 7716 3.071874 AGGCAATTGGAGTGAATCGAA 57.928 42.857 7.72 0.00 0.00 3.71
3210 7717 2.749076 CAAGGCAATTGGAGTGAATCGA 59.251 45.455 7.72 0.00 35.08 3.59
3211 7718 3.141002 CAAGGCAATTGGAGTGAATCG 57.859 47.619 7.72 0.00 35.08 3.34
3235 7742 4.367023 TGTACCGCAGTCCCGCAC 62.367 66.667 0.00 0.00 0.00 5.34
3236 7743 4.367023 GTGTACCGCAGTCCCGCA 62.367 66.667 0.00 0.00 0.00 5.69
3237 7744 3.659089 ATGTGTACCGCAGTCCCGC 62.659 63.158 0.00 0.00 0.00 6.13
3238 7745 1.518572 GATGTGTACCGCAGTCCCG 60.519 63.158 0.00 0.00 0.00 5.14
3239 7746 1.153429 GGATGTGTACCGCAGTCCC 60.153 63.158 0.00 0.00 0.00 4.46
3240 7747 1.153429 GGGATGTGTACCGCAGTCC 60.153 63.158 0.00 0.11 0.00 3.85
3241 7748 0.739813 GTGGGATGTGTACCGCAGTC 60.740 60.000 0.00 0.00 38.81 3.51
3242 7749 1.192146 AGTGGGATGTGTACCGCAGT 61.192 55.000 0.00 0.00 41.66 4.40
3243 7750 0.740868 CAGTGGGATGTGTACCGCAG 60.741 60.000 0.00 0.00 41.66 5.18
3244 7751 1.295101 CAGTGGGATGTGTACCGCA 59.705 57.895 0.00 0.00 41.66 5.69
3245 7752 2.106683 GCAGTGGGATGTGTACCGC 61.107 63.158 0.00 0.00 39.30 5.68
3246 7753 1.449601 GGCAGTGGGATGTGTACCG 60.450 63.158 0.00 0.00 0.00 4.02
3247 7754 0.392998 CTGGCAGTGGGATGTGTACC 60.393 60.000 6.28 0.00 0.00 3.34
3248 7755 0.392998 CCTGGCAGTGGGATGTGTAC 60.393 60.000 14.43 0.00 0.00 2.90
3249 7756 0.840288 ACCTGGCAGTGGGATGTGTA 60.840 55.000 14.43 0.00 0.00 2.90
3250 7757 2.156098 ACCTGGCAGTGGGATGTGT 61.156 57.895 14.43 0.00 0.00 3.72
3251 7758 1.676635 CACCTGGCAGTGGGATGTG 60.677 63.158 14.43 9.21 33.95 3.21
3252 7759 2.156098 ACACCTGGCAGTGGGATGT 61.156 57.895 14.43 6.75 42.28 3.06
3253 7760 1.676635 CACACCTGGCAGTGGGATG 60.677 63.158 14.43 6.13 44.30 3.51
3254 7761 1.847506 TCACACCTGGCAGTGGGAT 60.848 57.895 14.43 0.00 45.16 3.85
3256 7763 2.281761 GTCACACCTGGCAGTGGG 60.282 66.667 14.43 12.75 42.83 4.61
3257 7764 2.281761 GGTCACACCTGGCAGTGG 60.282 66.667 14.43 7.43 42.28 4.00
3258 7765 2.666190 CGGTCACACCTGGCAGTG 60.666 66.667 14.43 13.73 43.65 3.66
3259 7766 3.941188 CCGGTCACACCTGGCAGT 61.941 66.667 14.43 0.00 35.66 4.40
3260 7767 3.596066 CTCCGGTCACACCTGGCAG 62.596 68.421 7.75 7.75 35.66 4.85
3261 7768 3.625897 CTCCGGTCACACCTGGCA 61.626 66.667 0.00 0.00 35.66 4.92
3262 7769 3.302347 CTCTCCGGTCACACCTGGC 62.302 68.421 0.00 0.00 35.66 4.85
3263 7770 2.973899 CTCTCCGGTCACACCTGG 59.026 66.667 0.00 0.00 35.66 4.45
3264 7771 2.262915 GCTCTCCGGTCACACCTG 59.737 66.667 0.00 0.00 35.66 4.00
3265 7772 2.203640 TGCTCTCCGGTCACACCT 60.204 61.111 0.00 0.00 35.66 4.00
3266 7773 2.048127 GTGCTCTCCGGTCACACC 60.048 66.667 0.00 0.00 34.05 4.16
3267 7774 1.080434 GAGTGCTCTCCGGTCACAC 60.080 63.158 0.00 6.45 34.87 3.82
3268 7775 2.626780 CGAGTGCTCTCCGGTCACA 61.627 63.158 10.08 0.00 37.40 3.58
3269 7776 2.179517 CGAGTGCTCTCCGGTCAC 59.820 66.667 10.08 6.09 37.40 3.67
3270 7777 2.033602 TCGAGTGCTCTCCGGTCA 59.966 61.111 10.08 0.00 37.40 4.02
3271 7778 2.041686 ACTCGAGTGCTCTCCGGTC 61.042 63.158 19.30 0.00 37.40 4.79
3272 7779 2.034376 ACTCGAGTGCTCTCCGGT 59.966 61.111 19.30 6.38 37.40 5.28
3273 7780 2.487428 CACTCGAGTGCTCTCCGG 59.513 66.667 31.00 6.75 39.39 5.14
3286 7793 1.136500 CCTAGGGTTACCGAAGCACTC 59.864 57.143 0.00 0.00 43.47 3.51
3287 7794 1.192428 CCTAGGGTTACCGAAGCACT 58.808 55.000 0.00 0.00 43.47 4.40
3288 7795 0.177373 CCCTAGGGTTACCGAAGCAC 59.823 60.000 20.88 0.00 43.47 4.40
3289 7796 0.041535 TCCCTAGGGTTACCGAAGCA 59.958 55.000 27.58 0.49 43.47 3.91
3290 7797 0.751452 CTCCCTAGGGTTACCGAAGC 59.249 60.000 27.58 0.00 43.47 3.86
3291 7798 0.751452 GCTCCCTAGGGTTACCGAAG 59.249 60.000 27.58 16.13 43.47 3.79
3292 7799 0.688749 GGCTCCCTAGGGTTACCGAA 60.689 60.000 27.58 5.26 43.47 4.30
3293 7800 1.075748 GGCTCCCTAGGGTTACCGA 60.076 63.158 27.58 6.05 43.47 4.69
3294 7801 1.382146 TGGCTCCCTAGGGTTACCG 60.382 63.158 27.58 12.53 43.47 4.02
3295 7802 0.619543 TGTGGCTCCCTAGGGTTACC 60.620 60.000 27.58 24.50 36.47 2.85
3296 7803 1.141053 CATGTGGCTCCCTAGGGTTAC 59.859 57.143 27.58 20.05 36.47 2.50
3297 7804 1.507140 CATGTGGCTCCCTAGGGTTA 58.493 55.000 27.58 8.47 36.47 2.85
3298 7805 1.281925 CCATGTGGCTCCCTAGGGTT 61.282 60.000 27.58 2.46 36.47 4.11
3299 7806 1.694169 CCATGTGGCTCCCTAGGGT 60.694 63.158 27.58 2.99 36.47 4.34
3300 7807 3.244616 CCATGTGGCTCCCTAGGG 58.755 66.667 23.22 23.22 0.00 3.53
3310 7817 3.547649 CACATATTCATCGCCATGTGG 57.452 47.619 5.80 0.00 42.83 4.17
3311 7818 2.351060 GCCACATATTCATCGCCATGTG 60.351 50.000 6.58 6.58 45.00 3.21
3312 7819 1.881973 GCCACATATTCATCGCCATGT 59.118 47.619 0.00 0.00 31.91 3.21
3313 7820 2.156917 AGCCACATATTCATCGCCATG 58.843 47.619 0.00 0.00 0.00 3.66
3314 7821 2.430465 GAGCCACATATTCATCGCCAT 58.570 47.619 0.00 0.00 0.00 4.40
3315 7822 1.543208 GGAGCCACATATTCATCGCCA 60.543 52.381 0.00 0.00 0.00 5.69
3316 7823 1.160137 GGAGCCACATATTCATCGCC 58.840 55.000 0.00 0.00 0.00 5.54
3317 7824 1.160137 GGGAGCCACATATTCATCGC 58.840 55.000 0.00 0.00 0.00 4.58
3318 7825 1.072173 TGGGGAGCCACATATTCATCG 59.928 52.381 0.00 0.00 0.00 3.84
3319 7826 2.957402 TGGGGAGCCACATATTCATC 57.043 50.000 0.00 0.00 0.00 2.92
3320 7827 2.991713 AGATGGGGAGCCACATATTCAT 59.008 45.455 3.84 0.00 0.00 2.57
3321 7828 2.421725 AGATGGGGAGCCACATATTCA 58.578 47.619 3.84 0.00 0.00 2.57
3322 7829 3.152341 CAAGATGGGGAGCCACATATTC 58.848 50.000 8.58 0.00 0.00 1.75
3323 7830 2.515429 ACAAGATGGGGAGCCACATATT 59.485 45.455 3.84 4.92 0.00 1.28
3324 7831 2.107204 GACAAGATGGGGAGCCACATAT 59.893 50.000 3.84 0.00 0.00 1.78
3325 7832 1.490490 GACAAGATGGGGAGCCACATA 59.510 52.381 3.84 0.00 0.00 2.29
3326 7833 0.257039 GACAAGATGGGGAGCCACAT 59.743 55.000 3.41 3.41 0.00 3.21
3327 7834 0.842030 AGACAAGATGGGGAGCCACA 60.842 55.000 0.00 0.00 0.00 4.17
3328 7835 0.107459 GAGACAAGATGGGGAGCCAC 60.107 60.000 0.00 0.00 0.00 5.01
3329 7836 0.547471 TGAGACAAGATGGGGAGCCA 60.547 55.000 0.00 0.00 0.00 4.75
3330 7837 0.842635 ATGAGACAAGATGGGGAGCC 59.157 55.000 0.00 0.00 0.00 4.70
3331 7838 2.686915 CAAATGAGACAAGATGGGGAGC 59.313 50.000 0.00 0.00 0.00 4.70
3332 7839 3.944015 GACAAATGAGACAAGATGGGGAG 59.056 47.826 0.00 0.00 0.00 4.30
3333 7840 3.619733 CGACAAATGAGACAAGATGGGGA 60.620 47.826 0.00 0.00 0.00 4.81
3334 7841 2.679837 CGACAAATGAGACAAGATGGGG 59.320 50.000 0.00 0.00 0.00 4.96
3335 7842 2.096496 GCGACAAATGAGACAAGATGGG 59.904 50.000 0.00 0.00 0.00 4.00
3336 7843 2.743664 TGCGACAAATGAGACAAGATGG 59.256 45.455 0.00 0.00 0.00 3.51
3337 7844 4.153986 GTTGCGACAAATGAGACAAGATG 58.846 43.478 0.00 0.00 0.00 2.90
3338 7845 3.189287 GGTTGCGACAAATGAGACAAGAT 59.811 43.478 6.39 0.00 0.00 2.40
3339 7846 2.548057 GGTTGCGACAAATGAGACAAGA 59.452 45.455 6.39 0.00 0.00 3.02
3340 7847 2.549754 AGGTTGCGACAAATGAGACAAG 59.450 45.455 6.39 0.00 0.00 3.16
3341 7848 2.548057 GAGGTTGCGACAAATGAGACAA 59.452 45.455 6.39 0.00 0.00 3.18
3342 7849 2.143122 GAGGTTGCGACAAATGAGACA 58.857 47.619 6.39 0.00 0.00 3.41
3343 7850 2.096218 GTGAGGTTGCGACAAATGAGAC 60.096 50.000 6.39 0.00 0.00 3.36
3344 7851 2.143122 GTGAGGTTGCGACAAATGAGA 58.857 47.619 6.39 0.00 0.00 3.27
3345 7852 1.197721 GGTGAGGTTGCGACAAATGAG 59.802 52.381 6.39 0.00 0.00 2.90
3346 7853 1.202758 AGGTGAGGTTGCGACAAATGA 60.203 47.619 6.39 0.00 0.00 2.57
3347 7854 1.238439 AGGTGAGGTTGCGACAAATG 58.762 50.000 6.39 0.00 0.00 2.32
3348 7855 2.423577 GTAGGTGAGGTTGCGACAAAT 58.576 47.619 6.39 0.00 0.00 2.32
3349 7856 1.541670 GGTAGGTGAGGTTGCGACAAA 60.542 52.381 6.39 0.00 0.00 2.83
3350 7857 0.034337 GGTAGGTGAGGTTGCGACAA 59.966 55.000 6.39 0.00 0.00 3.18
3351 7858 1.116536 TGGTAGGTGAGGTTGCGACA 61.117 55.000 6.39 0.00 0.00 4.35
3352 7859 0.249398 ATGGTAGGTGAGGTTGCGAC 59.751 55.000 0.00 0.00 0.00 5.19
3353 7860 0.981183 AATGGTAGGTGAGGTTGCGA 59.019 50.000 0.00 0.00 0.00 5.10
3354 7861 1.086696 CAATGGTAGGTGAGGTTGCG 58.913 55.000 0.00 0.00 0.00 4.85
3355 7862 0.811281 GCAATGGTAGGTGAGGTTGC 59.189 55.000 0.00 0.00 35.74 4.17
3356 7863 1.463674 GGCAATGGTAGGTGAGGTTG 58.536 55.000 0.00 0.00 0.00 3.77
3357 7864 0.331616 GGGCAATGGTAGGTGAGGTT 59.668 55.000 0.00 0.00 0.00 3.50
3358 7865 0.844661 TGGGCAATGGTAGGTGAGGT 60.845 55.000 0.00 0.00 0.00 3.85
3359 7866 0.394352 GTGGGCAATGGTAGGTGAGG 60.394 60.000 0.00 0.00 0.00 3.86
3360 7867 0.327924 TGTGGGCAATGGTAGGTGAG 59.672 55.000 0.00 0.00 0.00 3.51
3361 7868 0.037590 GTGTGGGCAATGGTAGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
3362 7869 0.251121 TGTGTGGGCAATGGTAGGTG 60.251 55.000 0.00 0.00 0.00 4.00
3363 7870 0.704076 ATGTGTGGGCAATGGTAGGT 59.296 50.000 0.00 0.00 0.00 3.08
3364 7871 1.392589 GATGTGTGGGCAATGGTAGG 58.607 55.000 0.00 0.00 0.00 3.18
3365 7872 1.064463 AGGATGTGTGGGCAATGGTAG 60.064 52.381 0.00 0.00 0.00 3.18
3366 7873 0.998928 AGGATGTGTGGGCAATGGTA 59.001 50.000 0.00 0.00 0.00 3.25
3367 7874 0.612732 CAGGATGTGTGGGCAATGGT 60.613 55.000 0.00 0.00 0.00 3.55
3368 7875 1.324740 CCAGGATGTGTGGGCAATGG 61.325 60.000 0.00 0.00 0.00 3.16
3369 7876 0.612732 ACCAGGATGTGTGGGCAATG 60.613 55.000 0.00 0.00 39.65 2.82
3370 7877 0.323725 GACCAGGATGTGTGGGCAAT 60.324 55.000 0.00 0.00 43.47 3.56
3371 7878 1.074775 GACCAGGATGTGTGGGCAA 59.925 57.895 0.00 0.00 43.47 4.52
3372 7879 2.756400 GACCAGGATGTGTGGGCA 59.244 61.111 0.00 0.00 43.47 5.36
3373 7880 2.044946 GGACCAGGATGTGTGGGC 60.045 66.667 0.00 0.00 43.23 5.36
3374 7881 2.268920 CGGACCAGGATGTGTGGG 59.731 66.667 0.00 0.00 39.65 4.61
3375 7882 2.268920 CCGGACCAGGATGTGTGG 59.731 66.667 0.00 0.00 41.30 4.17
3376 7883 2.268920 CCCGGACCAGGATGTGTG 59.731 66.667 0.73 0.00 0.00 3.82
3377 7884 2.203938 ACCCGGACCAGGATGTGT 60.204 61.111 0.73 0.00 0.00 3.72
3378 7885 2.268920 CACCCGGACCAGGATGTG 59.731 66.667 0.73 0.00 0.00 3.21
3379 7886 3.717294 GCACCCGGACCAGGATGT 61.717 66.667 0.73 0.00 0.00 3.06
3380 7887 3.391665 GAGCACCCGGACCAGGATG 62.392 68.421 0.73 0.00 0.00 3.51
3381 7888 3.083997 GAGCACCCGGACCAGGAT 61.084 66.667 0.73 0.00 0.00 3.24
3384 7891 4.742201 CACGAGCACCCGGACCAG 62.742 72.222 0.73 0.00 0.00 4.00
3387 7894 4.736896 GTCCACGAGCACCCGGAC 62.737 72.222 0.73 1.70 41.08 4.79
3390 7897 4.742201 CTGGTCCACGAGCACCCG 62.742 72.222 0.00 0.00 35.04 5.28
3396 7903 4.803426 GAGCGGCTGGTCCACGAG 62.803 72.222 13.96 0.00 36.61 4.18
3402 7909 4.767255 CAGGTGGAGCGGCTGGTC 62.767 72.222 16.56 16.56 41.93 4.02
3404 7911 3.335356 AATCAGGTGGAGCGGCTGG 62.335 63.158 7.50 0.00 0.00 4.85
3405 7912 1.817099 GAATCAGGTGGAGCGGCTG 60.817 63.158 7.50 0.00 0.00 4.85
3406 7913 1.630126 ATGAATCAGGTGGAGCGGCT 61.630 55.000 0.00 0.00 0.00 5.52
3407 7914 0.749454 AATGAATCAGGTGGAGCGGC 60.749 55.000 0.00 0.00 0.00 6.53
3408 7915 1.019673 CAATGAATCAGGTGGAGCGG 58.980 55.000 0.00 0.00 0.00 5.52
3409 7916 1.019673 CCAATGAATCAGGTGGAGCG 58.980 55.000 9.47 0.00 32.54 5.03
3410 7917 2.019984 GACCAATGAATCAGGTGGAGC 58.980 52.381 19.07 9.17 35.36 4.70
3411 7918 2.025981 TGGACCAATGAATCAGGTGGAG 60.026 50.000 19.07 0.00 35.36 3.86
3412 7919 1.991813 TGGACCAATGAATCAGGTGGA 59.008 47.619 19.07 0.00 35.36 4.02
3413 7920 2.094675 GTGGACCAATGAATCAGGTGG 58.905 52.381 12.62 12.62 35.36 4.61
3414 7921 2.751259 CAGTGGACCAATGAATCAGGTG 59.249 50.000 17.01 0.00 35.36 4.00
3415 7922 2.881403 GCAGTGGACCAATGAATCAGGT 60.881 50.000 25.55 0.00 38.63 4.00
3416 7923 1.747355 GCAGTGGACCAATGAATCAGG 59.253 52.381 25.55 0.00 30.53 3.86
3417 7924 2.719739 AGCAGTGGACCAATGAATCAG 58.280 47.619 25.55 0.00 30.53 2.90
3418 7925 2.885135 AGCAGTGGACCAATGAATCA 57.115 45.000 25.55 0.00 30.53 2.57
3419 7926 3.378427 GGTAAGCAGTGGACCAATGAATC 59.622 47.826 25.55 7.96 30.53 2.52
3420 7927 3.356290 GGTAAGCAGTGGACCAATGAAT 58.644 45.455 25.55 14.51 30.53 2.57
3421 7928 2.790433 GGTAAGCAGTGGACCAATGAA 58.210 47.619 25.55 7.01 30.53 2.57
3422 7929 1.338674 CGGTAAGCAGTGGACCAATGA 60.339 52.381 25.55 1.61 30.53 2.57
3423 7930 1.086696 CGGTAAGCAGTGGACCAATG 58.913 55.000 17.60 17.60 32.39 2.82
3424 7931 3.551259 CGGTAAGCAGTGGACCAAT 57.449 52.632 0.00 0.00 32.39 3.16
3436 7943 1.429148 GCCGATGGACAAGCGGTAAG 61.429 60.000 8.59 0.00 46.38 2.34
3437 7944 1.448893 GCCGATGGACAAGCGGTAA 60.449 57.895 8.59 0.00 46.38 2.85
3438 7945 2.185867 GCCGATGGACAAGCGGTA 59.814 61.111 8.59 0.00 46.38 4.02
3439 7946 4.778143 GGCCGATGGACAAGCGGT 62.778 66.667 8.59 0.00 46.38 5.68
3441 7948 4.776322 TGGGCCGATGGACAAGCG 62.776 66.667 0.00 0.00 27.52 4.68
3442 7949 3.134127 GTGGGCCGATGGACAAGC 61.134 66.667 0.00 0.00 27.52 4.01
3443 7950 2.819595 CGTGGGCCGATGGACAAG 60.820 66.667 0.00 0.00 39.56 3.16
3444 7951 4.402528 CCGTGGGCCGATGGACAA 62.403 66.667 20.95 0.00 39.56 3.18
3465 7972 4.896829 TAGGAGCGCGAGGAGGGG 62.897 72.222 12.10 0.00 0.00 4.79
3466 7973 3.597728 GTAGGAGCGCGAGGAGGG 61.598 72.222 12.10 0.00 0.00 4.30
3467 7974 2.136196 GATGTAGGAGCGCGAGGAGG 62.136 65.000 12.10 0.00 0.00 4.30
3468 7975 1.169661 AGATGTAGGAGCGCGAGGAG 61.170 60.000 12.10 0.00 0.00 3.69
3469 7976 1.152943 AGATGTAGGAGCGCGAGGA 60.153 57.895 12.10 0.00 0.00 3.71
3470 7977 1.169661 AGAGATGTAGGAGCGCGAGG 61.170 60.000 12.10 0.00 0.00 4.63
3471 7978 0.040514 CAGAGATGTAGGAGCGCGAG 60.041 60.000 12.10 0.00 0.00 5.03
3472 7979 0.748367 ACAGAGATGTAGGAGCGCGA 60.748 55.000 12.10 0.00 0.00 5.87
3473 7980 0.945099 TACAGAGATGTAGGAGCGCG 59.055 55.000 0.00 0.00 0.00 6.86
3474 7981 1.001158 GGTACAGAGATGTAGGAGCGC 60.001 57.143 0.00 0.00 0.00 5.92
3475 7982 1.609555 GGGTACAGAGATGTAGGAGCG 59.390 57.143 0.00 0.00 0.00 5.03
3476 7983 1.964933 GGGGTACAGAGATGTAGGAGC 59.035 57.143 0.00 0.00 0.00 4.70
3477 7984 3.117474 TGAGGGGTACAGAGATGTAGGAG 60.117 52.174 0.00 0.00 0.00 3.69
3478 7985 2.856864 TGAGGGGTACAGAGATGTAGGA 59.143 50.000 0.00 0.00 0.00 2.94
3479 7986 3.226777 CTGAGGGGTACAGAGATGTAGG 58.773 54.545 0.00 0.00 37.54 3.18
3480 7987 3.226777 CCTGAGGGGTACAGAGATGTAG 58.773 54.545 0.00 0.00 37.54 2.74
3481 7988 2.690026 GCCTGAGGGGTACAGAGATGTA 60.690 54.545 0.00 0.00 37.54 2.29
3482 7989 1.967274 GCCTGAGGGGTACAGAGATGT 60.967 57.143 0.00 0.00 37.54 3.06
3483 7990 0.755686 GCCTGAGGGGTACAGAGATG 59.244 60.000 0.00 0.00 37.54 2.90
3484 7991 0.639392 AGCCTGAGGGGTACAGAGAT 59.361 55.000 0.00 0.00 42.14 2.75
3485 7992 0.324738 CAGCCTGAGGGGTACAGAGA 60.325 60.000 0.00 0.00 42.03 3.10
3486 7993 1.333636 CCAGCCTGAGGGGTACAGAG 61.334 65.000 0.00 0.00 42.03 3.35
3487 7994 1.306141 CCAGCCTGAGGGGTACAGA 60.306 63.158 0.00 0.00 42.03 3.41
3488 7995 1.201429 AACCAGCCTGAGGGGTACAG 61.201 60.000 0.00 0.00 42.03 2.74
3489 7996 0.117541 TAACCAGCCTGAGGGGTACA 59.882 55.000 0.00 0.00 42.03 2.90
3490 7997 1.508256 ATAACCAGCCTGAGGGGTAC 58.492 55.000 0.00 0.00 42.03 3.34
3491 7998 3.424724 TTATAACCAGCCTGAGGGGTA 57.575 47.619 0.00 0.00 42.03 3.69
3492 7999 2.280308 TTATAACCAGCCTGAGGGGT 57.720 50.000 0.00 0.00 45.23 4.95
3493 8000 2.711009 TCATTATAACCAGCCTGAGGGG 59.289 50.000 0.00 0.00 38.36 4.79
3494 8001 4.437682 TTCATTATAACCAGCCTGAGGG 57.562 45.455 0.00 0.00 0.00 4.30
3495 8002 5.440610 ACTTTCATTATAACCAGCCTGAGG 58.559 41.667 0.00 0.00 0.00 3.86
3496 8003 7.933577 TGATACTTTCATTATAACCAGCCTGAG 59.066 37.037 0.00 0.00 0.00 3.35
3497 8004 7.801104 TGATACTTTCATTATAACCAGCCTGA 58.199 34.615 0.00 0.00 0.00 3.86
3498 8005 8.627208 ATGATACTTTCATTATAACCAGCCTG 57.373 34.615 0.00 0.00 42.62 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.