Multiple sequence alignment - TraesCS7B01G474400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G474400 chr7B 100.000 4566 0 0 1 4566 730807690 730812255 0.000000e+00 8432.0
1 TraesCS7B01G474400 chr7B 79.728 1470 199 62 1257 2676 731036645 731035225 0.000000e+00 972.0
2 TraesCS7B01G474400 chr7B 81.304 230 29 8 2682 2898 731035164 731034936 1.690000e-39 174.0
3 TraesCS7B01G474400 chr7B 87.234 141 16 1 1892 2032 731045673 731045535 4.730000e-35 159.0
4 TraesCS7B01G474400 chr7B 87.500 96 12 0 1463 1558 731046140 731046045 1.340000e-20 111.0
5 TraesCS7B01G474400 chr7B 78.102 137 28 2 3432 3567 731041917 731041782 8.140000e-13 86.1
6 TraesCS7B01G474400 chr7D 89.968 1565 102 24 2079 3609 628223681 628222138 0.000000e+00 1969.0
7 TraesCS7B01G474400 chr7D 79.223 1468 188 59 1254 2676 629116634 629118029 0.000000e+00 913.0
8 TraesCS7B01G474400 chr7D 78.411 1158 154 57 2477 3603 628218992 628217900 0.000000e+00 665.0
9 TraesCS7B01G474400 chr7D 86.120 598 61 14 1888 2474 628219627 628219041 3.880000e-175 625.0
10 TraesCS7B01G474400 chr7D 94.649 299 16 0 3988 4286 628217199 628216901 8.950000e-127 464.0
11 TraesCS7B01G474400 chr7D 85.635 362 48 2 3243 3600 628506009 628505648 1.200000e-100 377.0
12 TraesCS7B01G474400 chr7D 77.415 735 86 36 1070 1759 628220533 628219834 9.340000e-97 364.0
13 TraesCS7B01G474400 chr7D 79.685 571 62 21 1023 1549 628224846 628224286 3.360000e-96 363.0
14 TraesCS7B01G474400 chr7D 77.690 381 66 11 1643 2022 628224234 628223872 9.950000e-52 215.0
15 TraesCS7B01G474400 chr7D 96.694 121 3 1 4446 4566 628216903 628216784 2.790000e-47 200.0
16 TraesCS7B01G474400 chr7D 75.935 428 61 26 2682 3095 629118090 629118489 1.010000e-41 182.0
17 TraesCS7B01G474400 chr7D 75.510 392 75 17 3181 3567 629110578 629110953 6.070000e-39 172.0
18 TraesCS7B01G474400 chr7D 86.061 165 15 5 1071 1230 210054400 210054239 2.180000e-38 171.0
19 TraesCS7B01G474400 chr7D 76.807 332 54 15 2121 2450 92215281 92215591 1.020000e-36 165.0
20 TraesCS7B01G474400 chr7D 88.281 128 15 0 1892 2019 629108797 629108924 2.200000e-33 154.0
21 TraesCS7B01G474400 chr7A 90.989 1143 66 15 2476 3609 724948062 724949176 0.000000e+00 1506.0
22 TraesCS7B01G474400 chr7A 88.075 1065 70 32 723 1758 724918832 724919868 0.000000e+00 1210.0
23 TraesCS7B01G474400 chr7A 79.807 1451 184 56 1257 2664 725137612 725136228 0.000000e+00 955.0
24 TraesCS7B01G474400 chr7A 91.831 661 43 6 1891 2550 724919959 724920609 0.000000e+00 911.0
25 TraesCS7B01G474400 chr7A 90.694 591 34 9 2 571 724918193 724918783 0.000000e+00 767.0
26 TraesCS7B01G474400 chr7A 86.733 603 54 18 1878 2468 724951345 724951933 0.000000e+00 647.0
27 TraesCS7B01G474400 chr7A 81.043 786 91 35 1011 1757 724950489 724951255 1.420000e-159 573.0
28 TraesCS7B01G474400 chr7A 91.022 401 25 8 2079 2474 724947508 724947902 8.700000e-147 531.0
29 TraesCS7B01G474400 chr7A 79.099 799 99 30 1022 1764 724946353 724947139 5.310000e-134 488.0
30 TraesCS7B01G474400 chr7A 94.983 299 15 0 3988 4286 724961291 724961589 1.920000e-128 470.0
31 TraesCS7B01G474400 chr7A 82.507 383 44 13 2476 2854 724951989 724952352 9.540000e-82 315.0
32 TraesCS7B01G474400 chr7A 98.830 171 2 0 4278 4448 131816143 131815973 5.740000e-79 305.0
33 TraesCS7B01G474400 chr7A 97.727 176 4 0 4281 4456 556571438 556571263 2.060000e-78 303.0
34 TraesCS7B01G474400 chr7A 96.216 185 5 2 4281 4464 50348434 50348617 7.420000e-78 302.0
35 TraesCS7B01G474400 chr7A 89.474 152 16 0 3452 3603 724960193 724960344 4.660000e-45 193.0
36 TraesCS7B01G474400 chr7A 95.614 114 5 0 4446 4559 724961587 724961700 2.810000e-42 183.0
37 TraesCS7B01G474400 chr7A 75.703 391 73 18 3184 3567 725151245 725150870 4.690000e-40 176.0
38 TraesCS7B01G474400 chr7A 81.140 228 28 7 2682 2898 725136170 725135947 7.860000e-38 169.0
39 TraesCS7B01G474400 chr7A 78.491 265 37 12 2850 3108 724959711 724959961 6.120000e-34 156.0
40 TraesCS7B01G474400 chr3A 100.000 167 0 0 4282 4448 602023056 602023222 4.440000e-80 309.0
41 TraesCS7B01G474400 chr1A 98.837 172 2 0 4285 4456 494815578 494815407 1.600000e-79 307.0
42 TraesCS7B01G474400 chr5A 97.727 176 4 0 4281 4456 327433241 327433416 2.060000e-78 303.0
43 TraesCS7B01G474400 chr5B 97.727 176 3 1 4280 4455 656245132 656244958 7.420000e-78 302.0
44 TraesCS7B01G474400 chr6D 97.175 177 5 0 4285 4461 15354718 15354542 2.670000e-77 300.0
45 TraesCS7B01G474400 chr2A 96.175 183 5 1 4282 4462 746687208 746687390 9.600000e-77 298.0
46 TraesCS7B01G474400 chr4D 88.024 167 11 6 2167 2331 498127111 498126952 6.030000e-44 189.0
47 TraesCS7B01G474400 chr4D 85.083 181 19 5 1065 1240 154011261 154011084 1.310000e-40 178.0
48 TraesCS7B01G474400 chr4D 84.043 188 22 5 1058 1240 40122404 40122220 1.690000e-39 174.0
49 TraesCS7B01G474400 chr4D 93.333 45 3 0 432 476 266037514 266037558 2.950000e-07 67.6
50 TraesCS7B01G474400 chr3D 82.703 185 24 5 1052 1231 443014366 443014547 1.700000e-34 158.0
51 TraesCS7B01G474400 chr3D 90.196 51 4 1 432 482 318829335 318829286 1.060000e-06 65.8
52 TraesCS7B01G474400 chr5D 93.333 45 3 0 432 476 406335709 406335753 2.950000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G474400 chr7B 730807690 730812255 4565 False 8432.000000 8432 100.000000 1 4566 1 chr7B.!!$F1 4565
1 TraesCS7B01G474400 chr7B 731034936 731036645 1709 True 573.000000 972 80.516000 1257 2898 2 chr7B.!!$R1 1641
2 TraesCS7B01G474400 chr7D 628216784 628224846 8062 True 608.125000 1969 85.079000 1023 4566 8 chr7D.!!$R3 3543
3 TraesCS7B01G474400 chr7D 629116634 629118489 1855 False 547.500000 913 77.579000 1254 3095 2 chr7D.!!$F3 1841
4 TraesCS7B01G474400 chr7A 724918193 724920609 2416 False 962.666667 1210 90.200000 2 2550 3 chr7A.!!$F2 2548
5 TraesCS7B01G474400 chr7A 724946353 724952352 5999 False 676.666667 1506 85.232167 1011 3609 6 chr7A.!!$F3 2598
6 TraesCS7B01G474400 chr7A 725135947 725137612 1665 True 562.000000 955 80.473500 1257 2898 2 chr7A.!!$R4 1641
7 TraesCS7B01G474400 chr7A 724959711 724961700 1989 False 250.500000 470 89.640500 2850 4559 4 chr7A.!!$F4 1709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 458 0.037326 GATGGCTCACCTGTTGACGA 60.037 55.0 0.0 0.0 36.63 4.20 F
933 956 0.108138 CTCCACGCCCCTAGACAAAG 60.108 60.0 0.0 0.0 0.00 2.77 F
1552 1660 0.108207 GATCCCCGAGAGAGGTACGA 59.892 60.0 0.0 0.0 0.00 3.43 F
1563 1671 0.320421 GAGGTACGACTTGCCTTGCA 60.320 55.0 0.0 0.0 41.22 4.08 F
3222 3793 0.039165 GCGACAAAGAAAAGCCAGGG 60.039 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2209 0.173481 TCGGAGTGGAATTCAGAGCG 59.827 55.000 7.93 0.0 0.00 5.03 R
2329 2644 1.591703 GTGCCTCCTCACGATGTCA 59.408 57.895 0.00 0.0 0.00 3.58 R
3222 3793 2.125391 GGTACCTCGAAACGGCCC 60.125 66.667 4.06 0.0 0.00 5.80 R
3532 4112 2.508891 CGACGATCTGTTGGCGAGC 61.509 63.158 0.00 0.0 43.28 5.03 R
4437 9884 0.386113 GCTAACTGCTACTCCCTCCG 59.614 60.000 0.00 0.0 38.95 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 6.388619 ACCTTAGGTGGAAACATAATGACT 57.611 37.500 1.74 0.00 46.14 3.41
219 235 6.359480 ACGGCTAAGCAAAATAGATAACAC 57.641 37.500 0.00 0.00 0.00 3.32
277 293 5.468540 TGAATACACCTCCTCGATAATGG 57.531 43.478 0.00 0.00 0.00 3.16
307 323 6.772716 AGAAAAAGTCTTGATTGCTACAAGGA 59.227 34.615 14.36 3.73 43.11 3.36
315 331 8.462016 GTCTTGATTGCTACAAGGATAAATGTT 58.538 33.333 14.36 0.00 43.11 2.71
319 335 5.811399 TGCTACAAGGATAAATGTTTCCG 57.189 39.130 0.00 0.00 37.10 4.30
322 338 6.093495 TGCTACAAGGATAAATGTTTCCGAAG 59.907 38.462 0.00 0.00 37.10 3.79
334 350 3.383185 TGTTTCCGAAGTTTTTGAGGCAT 59.617 39.130 0.00 0.00 0.00 4.40
335 351 4.580995 TGTTTCCGAAGTTTTTGAGGCATA 59.419 37.500 0.00 0.00 0.00 3.14
343 359 7.255104 CCGAAGTTTTTGAGGCATATATAAGCA 60.255 37.037 11.74 0.00 0.00 3.91
350 366 6.882610 TGAGGCATATATAAGCAAAGGTTG 57.117 37.500 11.74 0.00 0.00 3.77
361 377 1.004918 AAAGGTTGGACGAGAGGCG 60.005 57.895 0.00 0.00 43.44 5.52
362 378 2.450479 AAAGGTTGGACGAGAGGCGG 62.450 60.000 0.00 0.00 46.49 6.13
363 379 3.379445 GGTTGGACGAGAGGCGGA 61.379 66.667 0.00 0.00 46.49 5.54
366 382 2.636412 TTGGACGAGAGGCGGACAG 61.636 63.158 0.00 0.00 46.49 3.51
418 440 2.964209 CTAGGTGCCTAGAATGGGAGA 58.036 52.381 17.99 0.00 46.56 3.71
425 447 2.333069 CCTAGAATGGGAGATGGCTCA 58.667 52.381 0.00 0.00 40.53 4.26
429 451 0.549950 AATGGGAGATGGCTCACCTG 59.450 55.000 0.00 0.00 44.22 4.00
436 458 0.037326 GATGGCTCACCTGTTGACGA 60.037 55.000 0.00 0.00 36.63 4.20
440 462 1.071605 GCTCACCTGTTGACGATGTC 58.928 55.000 0.00 0.00 0.00 3.06
443 465 2.492088 CTCACCTGTTGACGATGTCCTA 59.508 50.000 0.00 0.00 0.00 2.94
446 468 3.432252 CACCTGTTGACGATGTCCTAAAC 59.568 47.826 0.00 0.00 0.00 2.01
450 472 5.105877 CCTGTTGACGATGTCCTAAACTAGA 60.106 44.000 0.00 0.00 0.00 2.43
467 489 1.380524 AGAGGGTACTCATCACGTCG 58.619 55.000 0.00 0.00 46.44 5.12
517 539 1.004440 CGAGGGCATAGCTTAGGGC 60.004 63.158 0.00 0.00 42.19 5.19
571 593 5.339990 ACGGAACAATTGAAAAGTGAACTG 58.660 37.500 13.59 0.78 46.37 3.16
572 594 5.124776 ACGGAACAATTGAAAAGTGAACTGA 59.875 36.000 13.59 0.00 46.37 3.41
573 595 5.682862 CGGAACAATTGAAAAGTGAACTGAG 59.317 40.000 13.59 0.00 46.37 3.35
574 596 6.564328 GGAACAATTGAAAAGTGAACTGAGT 58.436 36.000 13.59 0.00 46.37 3.41
575 597 7.466725 CGGAACAATTGAAAAGTGAACTGAGTA 60.467 37.037 13.59 0.00 46.37 2.59
576 598 8.352942 GGAACAATTGAAAAGTGAACTGAGTAT 58.647 33.333 13.59 0.00 46.37 2.12
577 599 9.173939 GAACAATTGAAAAGTGAACTGAGTATG 57.826 33.333 13.59 0.00 46.37 2.39
578 600 7.651808 ACAATTGAAAAGTGAACTGAGTATGG 58.348 34.615 13.59 0.00 46.37 2.74
579 601 7.502226 ACAATTGAAAAGTGAACTGAGTATGGA 59.498 33.333 13.59 0.00 46.37 3.41
580 602 8.352201 CAATTGAAAAGTGAACTGAGTATGGAA 58.648 33.333 0.00 0.00 46.37 3.53
581 603 8.641498 ATTGAAAAGTGAACTGAGTATGGAAT 57.359 30.769 0.00 0.00 0.00 3.01
582 604 9.739276 ATTGAAAAGTGAACTGAGTATGGAATA 57.261 29.630 0.00 0.00 0.00 1.75
583 605 8.777865 TGAAAAGTGAACTGAGTATGGAATAG 57.222 34.615 0.00 0.00 0.00 1.73
584 606 7.334421 TGAAAAGTGAACTGAGTATGGAATAGC 59.666 37.037 0.00 0.00 0.00 2.97
585 607 5.939764 AGTGAACTGAGTATGGAATAGCA 57.060 39.130 0.00 0.00 0.00 3.49
586 608 6.299805 AGTGAACTGAGTATGGAATAGCAA 57.700 37.500 0.00 0.00 0.00 3.91
587 609 6.893583 AGTGAACTGAGTATGGAATAGCAAT 58.106 36.000 0.00 0.00 0.00 3.56
588 610 6.989169 AGTGAACTGAGTATGGAATAGCAATC 59.011 38.462 0.00 0.00 0.00 2.67
589 611 6.763135 GTGAACTGAGTATGGAATAGCAATCA 59.237 38.462 0.00 0.00 0.00 2.57
590 612 7.280876 GTGAACTGAGTATGGAATAGCAATCAA 59.719 37.037 0.00 0.00 0.00 2.57
591 613 7.994911 TGAACTGAGTATGGAATAGCAATCAAT 59.005 33.333 0.00 0.00 0.00 2.57
592 614 9.494271 GAACTGAGTATGGAATAGCAATCAATA 57.506 33.333 0.00 0.00 0.00 1.90
598 620 9.236006 AGTATGGAATAGCAATCAATATTCACC 57.764 33.333 7.12 0.00 39.24 4.02
599 621 6.899393 TGGAATAGCAATCAATATTCACCC 57.101 37.500 7.12 0.00 39.24 4.61
600 622 6.613699 TGGAATAGCAATCAATATTCACCCT 58.386 36.000 7.12 0.00 39.24 4.34
601 623 7.754624 TGGAATAGCAATCAATATTCACCCTA 58.245 34.615 7.12 0.00 39.24 3.53
602 624 7.665559 TGGAATAGCAATCAATATTCACCCTAC 59.334 37.037 7.12 0.00 39.24 3.18
603 625 7.121315 GGAATAGCAATCAATATTCACCCTACC 59.879 40.741 7.12 0.00 39.24 3.18
604 626 5.387113 AGCAATCAATATTCACCCTACCA 57.613 39.130 0.00 0.00 0.00 3.25
605 627 5.765510 AGCAATCAATATTCACCCTACCAA 58.234 37.500 0.00 0.00 0.00 3.67
606 628 6.194235 AGCAATCAATATTCACCCTACCAAA 58.806 36.000 0.00 0.00 0.00 3.28
607 629 6.096846 AGCAATCAATATTCACCCTACCAAAC 59.903 38.462 0.00 0.00 0.00 2.93
608 630 6.127479 GCAATCAATATTCACCCTACCAAACA 60.127 38.462 0.00 0.00 0.00 2.83
609 631 7.257722 CAATCAATATTCACCCTACCAAACAC 58.742 38.462 0.00 0.00 0.00 3.32
610 632 4.938832 TCAATATTCACCCTACCAAACACG 59.061 41.667 0.00 0.00 0.00 4.49
611 633 1.530323 ATTCACCCTACCAAACACGC 58.470 50.000 0.00 0.00 0.00 5.34
612 634 0.535553 TTCACCCTACCAAACACGCC 60.536 55.000 0.00 0.00 0.00 5.68
613 635 1.969589 CACCCTACCAAACACGCCC 60.970 63.158 0.00 0.00 0.00 6.13
614 636 2.432563 CCCTACCAAACACGCCCA 59.567 61.111 0.00 0.00 0.00 5.36
615 637 1.001393 CCCTACCAAACACGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
616 638 0.253610 CCCTACCAAACACGCCCATA 59.746 55.000 0.00 0.00 0.00 2.74
617 639 1.133915 CCCTACCAAACACGCCCATAT 60.134 52.381 0.00 0.00 0.00 1.78
618 640 2.105134 CCCTACCAAACACGCCCATATA 59.895 50.000 0.00 0.00 0.00 0.86
619 641 3.244770 CCCTACCAAACACGCCCATATAT 60.245 47.826 0.00 0.00 0.00 0.86
620 642 3.751175 CCTACCAAACACGCCCATATATG 59.249 47.826 5.68 5.68 0.00 1.78
622 644 2.092103 ACCAAACACGCCCATATATGGT 60.092 45.455 26.59 9.03 46.65 3.55
623 645 2.293122 CCAAACACGCCCATATATGGTG 59.707 50.000 26.59 20.88 46.65 4.17
624 646 2.270352 AACACGCCCATATATGGTGG 57.730 50.000 26.59 20.17 46.65 4.61
625 647 1.136828 ACACGCCCATATATGGTGGT 58.863 50.000 26.59 20.73 46.65 4.16
626 648 1.071699 ACACGCCCATATATGGTGGTC 59.928 52.381 26.59 13.52 46.65 4.02
627 649 0.690762 ACGCCCATATATGGTGGTCC 59.309 55.000 26.59 10.90 46.65 4.46
637 659 1.839747 TGGTGGTCCAAGGTAGCGT 60.840 57.895 0.00 0.00 41.25 5.07
656 678 4.048696 GAGCTCTCCTCCAAGGCT 57.951 61.111 6.43 0.00 34.61 4.58
657 679 1.822615 GAGCTCTCCTCCAAGGCTC 59.177 63.158 6.43 0.00 41.65 4.70
658 680 1.685355 GAGCTCTCCTCCAAGGCTCC 61.685 65.000 6.43 0.00 42.20 4.70
659 681 1.992277 GCTCTCCTCCAAGGCTCCA 60.992 63.158 0.00 0.00 34.61 3.86
660 682 1.557269 GCTCTCCTCCAAGGCTCCAA 61.557 60.000 0.00 0.00 34.61 3.53
678 700 1.138661 CAACAAAGCCCTCCAGCAAAA 59.861 47.619 0.00 0.00 34.23 2.44
679 701 0.752658 ACAAAGCCCTCCAGCAAAAC 59.247 50.000 0.00 0.00 34.23 2.43
681 703 1.413812 CAAAGCCCTCCAGCAAAACTT 59.586 47.619 0.00 0.00 34.23 2.66
682 704 1.332195 AAGCCCTCCAGCAAAACTTC 58.668 50.000 0.00 0.00 34.23 3.01
683 705 0.480252 AGCCCTCCAGCAAAACTTCT 59.520 50.000 0.00 0.00 34.23 2.85
684 706 0.884514 GCCCTCCAGCAAAACTTCTC 59.115 55.000 0.00 0.00 0.00 2.87
685 707 1.819305 GCCCTCCAGCAAAACTTCTCA 60.819 52.381 0.00 0.00 0.00 3.27
686 708 2.157738 CCCTCCAGCAAAACTTCTCAG 58.842 52.381 0.00 0.00 0.00 3.35
687 709 2.224621 CCCTCCAGCAAAACTTCTCAGA 60.225 50.000 0.00 0.00 0.00 3.27
688 710 3.560882 CCCTCCAGCAAAACTTCTCAGAT 60.561 47.826 0.00 0.00 0.00 2.90
689 711 4.077822 CCTCCAGCAAAACTTCTCAGATT 58.922 43.478 0.00 0.00 0.00 2.40
690 712 4.522022 CCTCCAGCAAAACTTCTCAGATTT 59.478 41.667 0.00 0.00 0.00 2.17
691 713 5.707298 CCTCCAGCAAAACTTCTCAGATTTA 59.293 40.000 0.00 0.00 0.00 1.40
692 714 6.348868 CCTCCAGCAAAACTTCTCAGATTTAC 60.349 42.308 0.00 0.00 0.00 2.01
693 715 6.299141 TCCAGCAAAACTTCTCAGATTTACT 58.701 36.000 0.00 0.00 0.00 2.24
694 716 6.772716 TCCAGCAAAACTTCTCAGATTTACTT 59.227 34.615 0.00 0.00 0.00 2.24
695 717 7.041098 TCCAGCAAAACTTCTCAGATTTACTTC 60.041 37.037 0.00 0.00 0.00 3.01
696 718 7.080724 CAGCAAAACTTCTCAGATTTACTTCC 58.919 38.462 0.00 0.00 0.00 3.46
697 719 6.772716 AGCAAAACTTCTCAGATTTACTTCCA 59.227 34.615 0.00 0.00 0.00 3.53
698 720 7.285401 AGCAAAACTTCTCAGATTTACTTCCAA 59.715 33.333 0.00 0.00 0.00 3.53
699 721 8.084684 GCAAAACTTCTCAGATTTACTTCCAAT 58.915 33.333 0.00 0.00 0.00 3.16
708 730 9.587772 CTCAGATTTACTTCCAATATATACCCG 57.412 37.037 0.00 0.00 0.00 5.28
709 731 8.038944 TCAGATTTACTTCCAATATATACCCGC 58.961 37.037 0.00 0.00 0.00 6.13
710 732 7.822334 CAGATTTACTTCCAATATATACCCGCA 59.178 37.037 0.00 0.00 0.00 5.69
711 733 8.380099 AGATTTACTTCCAATATATACCCGCAA 58.620 33.333 0.00 0.00 0.00 4.85
712 734 8.927675 ATTTACTTCCAATATATACCCGCAAA 57.072 30.769 0.00 0.00 0.00 3.68
713 735 7.972832 TTACTTCCAATATATACCCGCAAAG 57.027 36.000 0.00 0.00 0.00 2.77
714 736 6.182507 ACTTCCAATATATACCCGCAAAGA 57.817 37.500 0.00 0.00 0.00 2.52
715 737 6.597562 ACTTCCAATATATACCCGCAAAGAA 58.402 36.000 0.00 0.00 0.00 2.52
716 738 7.057894 ACTTCCAATATATACCCGCAAAGAAA 58.942 34.615 0.00 0.00 0.00 2.52
717 739 7.558444 ACTTCCAATATATACCCGCAAAGAAAA 59.442 33.333 0.00 0.00 0.00 2.29
718 740 7.883391 TCCAATATATACCCGCAAAGAAAAA 57.117 32.000 0.00 0.00 0.00 1.94
860 882 5.050363 CAGTGTACAAGTCAAACTTACGCAT 60.050 40.000 0.00 0.00 36.03 4.73
867 889 3.997021 AGTCAAACTTACGCATCTCAAGG 59.003 43.478 0.00 0.00 0.00 3.61
877 899 1.202268 GCATCTCAAGGCTCAATGCAC 60.202 52.381 14.59 0.00 45.15 4.57
880 902 0.524862 CTCAAGGCTCAATGCACACC 59.475 55.000 0.00 0.00 45.15 4.16
881 903 0.895100 TCAAGGCTCAATGCACACCC 60.895 55.000 0.00 0.00 45.15 4.61
882 904 1.153524 AAGGCTCAATGCACACCCA 59.846 52.632 0.00 0.00 45.15 4.51
913 935 7.064016 CGATGCTAGCTAAAAAGTCTTCTTCTT 59.936 37.037 17.23 0.00 32.90 2.52
914 936 7.659652 TGCTAGCTAAAAAGTCTTCTTCTTC 57.340 36.000 17.23 0.00 32.90 2.87
915 937 7.445945 TGCTAGCTAAAAAGTCTTCTTCTTCT 58.554 34.615 17.23 0.00 32.90 2.85
930 953 0.970937 CTTCTCCACGCCCCTAGACA 60.971 60.000 0.00 0.00 0.00 3.41
933 956 0.108138 CTCCACGCCCCTAGACAAAG 60.108 60.000 0.00 0.00 0.00 2.77
950 973 3.879892 ACAAAGCAAGTCTTCTTCTCCAC 59.120 43.478 0.00 0.00 32.88 4.02
970 993 4.371417 CACCCTGCCCACCTGCAT 62.371 66.667 0.00 0.00 41.16 3.96
971 994 2.613696 ACCCTGCCCACCTGCATA 60.614 61.111 0.00 0.00 41.16 3.14
972 995 2.124151 CCCTGCCCACCTGCATAC 60.124 66.667 0.00 0.00 41.16 2.39
973 996 2.676608 CCTGCCCACCTGCATACA 59.323 61.111 0.00 0.00 41.16 2.29
974 997 1.228228 CCTGCCCACCTGCATACAT 59.772 57.895 0.00 0.00 41.16 2.29
975 998 0.473755 CCTGCCCACCTGCATACATA 59.526 55.000 0.00 0.00 41.16 2.29
976 999 1.597742 CTGCCCACCTGCATACATAC 58.402 55.000 0.00 0.00 41.16 2.39
977 1000 0.915364 TGCCCACCTGCATACATACA 59.085 50.000 0.00 0.00 36.04 2.29
978 1001 1.494296 TGCCCACCTGCATACATACAT 59.506 47.619 0.00 0.00 36.04 2.29
979 1002 2.708325 TGCCCACCTGCATACATACATA 59.292 45.455 0.00 0.00 36.04 2.29
980 1003 3.074412 GCCCACCTGCATACATACATAC 58.926 50.000 0.00 0.00 0.00 2.39
981 1004 3.325870 CCCACCTGCATACATACATACG 58.674 50.000 0.00 0.00 0.00 3.06
986 1009 3.306019 CCTGCATACATACATACGGAGCA 60.306 47.826 0.00 0.00 0.00 4.26
991 1014 3.819564 ACATACATACGGAGCACACAT 57.180 42.857 0.00 0.00 0.00 3.21
993 1016 5.468540 ACATACATACGGAGCACACATAT 57.531 39.130 0.00 0.00 0.00 1.78
998 1021 5.470368 ACATACGGAGCACACATATACATC 58.530 41.667 0.00 0.00 0.00 3.06
1008 1031 4.694037 CACACATATACATCCATGGAGCTG 59.306 45.833 21.33 16.72 0.00 4.24
1013 1036 1.597302 CATCCATGGAGCTGGCGAG 60.597 63.158 21.33 0.00 36.16 5.03
1029 1052 0.917259 CGAGGACGAGAATGAAAGCG 59.083 55.000 0.00 0.00 42.66 4.68
1115 1138 1.737793 GGACATCACGCCAAAGGTAAG 59.262 52.381 0.00 0.00 0.00 2.34
1171 1214 6.441274 TGAGCTGATTTGATCTGAACAAAAC 58.559 36.000 15.55 13.56 39.95 2.43
1287 1360 4.694233 AGCACGCTGGGCAGACTG 62.694 66.667 5.62 0.00 0.00 3.51
1344 1417 1.530419 AAATGCCACCGGTTCAGCA 60.530 52.632 22.10 22.10 40.00 4.41
1370 1452 6.363473 CGGTACATTGAGTTTCTGAACTTTC 58.637 40.000 0.00 0.00 45.88 2.62
1447 1535 2.736144 TGTAGGTTGTAGAGGTTGCG 57.264 50.000 0.00 0.00 0.00 4.85
1552 1660 0.108207 GATCCCCGAGAGAGGTACGA 59.892 60.000 0.00 0.00 0.00 3.43
1560 1668 1.819903 GAGAGAGGTACGACTTGCCTT 59.180 52.381 0.00 0.00 41.22 4.35
1563 1671 0.320421 GAGGTACGACTTGCCTTGCA 60.320 55.000 0.00 0.00 41.22 4.08
1568 1676 0.593128 ACGACTTGCCTTGCATGTTC 59.407 50.000 8.70 3.04 44.77 3.18
1569 1677 0.592637 CGACTTGCCTTGCATGTTCA 59.407 50.000 8.70 0.00 44.77 3.18
1570 1678 1.400629 CGACTTGCCTTGCATGTTCAG 60.401 52.381 8.70 0.00 44.77 3.02
1571 1679 1.610522 GACTTGCCTTGCATGTTCAGT 59.389 47.619 8.70 0.20 44.77 3.41
1581 1693 3.149196 TGCATGTTCAGTTTCCTTCTCC 58.851 45.455 0.00 0.00 0.00 3.71
1591 1703 3.323979 AGTTTCCTTCTCCGAACAAGCTA 59.676 43.478 0.00 0.00 0.00 3.32
1599 1719 1.202582 TCCGAACAAGCTAGCAGAGTC 59.797 52.381 18.83 7.88 0.00 3.36
1605 1733 1.203523 CAAGCTAGCAGAGTCCGTTCT 59.796 52.381 18.83 0.00 0.00 3.01
1608 1736 1.202582 GCTAGCAGAGTCCGTTCTTCA 59.797 52.381 10.63 0.00 0.00 3.02
1611 1739 2.966050 AGCAGAGTCCGTTCTTCAATC 58.034 47.619 0.00 0.00 0.00 2.67
1612 1740 2.564947 AGCAGAGTCCGTTCTTCAATCT 59.435 45.455 0.00 0.00 0.00 2.40
1669 1821 5.408880 TTCATGGTTTCATCATGCAATGT 57.591 34.783 0.00 0.00 46.80 2.71
1682 1834 2.033141 AATGTGCAGGACAGCGCT 59.967 55.556 2.64 2.64 44.96 5.92
1700 1852 0.539051 CTGCTGGGAAGTACCTCCTG 59.461 60.000 10.38 5.31 38.98 3.86
1729 1881 1.310904 GTAGGGTACGCTGAGAGAGG 58.689 60.000 21.79 0.00 0.00 3.69
1759 1911 3.222173 TGCAACTGTCCACAAGGTAAT 57.778 42.857 0.00 0.00 35.89 1.89
1764 1916 5.335661 GCAACTGTCCACAAGGTAATTAAGG 60.336 44.000 0.00 0.00 35.89 2.69
1765 1917 4.918588 ACTGTCCACAAGGTAATTAAGGG 58.081 43.478 0.00 0.00 35.89 3.95
1766 1918 4.600111 ACTGTCCACAAGGTAATTAAGGGA 59.400 41.667 0.00 0.00 35.89 4.20
1767 1919 5.073965 ACTGTCCACAAGGTAATTAAGGGAA 59.926 40.000 0.00 0.00 35.89 3.97
1768 1920 5.566469 TGTCCACAAGGTAATTAAGGGAAG 58.434 41.667 0.00 0.00 35.89 3.46
1777 1929 9.734984 CAAGGTAATTAAGGGAAGAAGAACTAA 57.265 33.333 0.00 0.00 0.00 2.24
1801 1953 5.358160 ACAAGAGGTTCTTCAAGGTTTTGAG 59.642 40.000 0.00 0.00 43.76 3.02
1802 1954 5.117406 AGAGGTTCTTCAAGGTTTTGAGT 57.883 39.130 0.00 0.00 43.76 3.41
1804 1956 3.381590 AGGTTCTTCAAGGTTTTGAGTGC 59.618 43.478 0.00 0.00 43.76 4.40
1806 1958 4.142160 GGTTCTTCAAGGTTTTGAGTGCTT 60.142 41.667 0.00 0.00 43.76 3.91
1809 1961 4.336433 TCTTCAAGGTTTTGAGTGCTTCAG 59.664 41.667 0.00 0.00 43.76 3.02
1810 1962 2.358898 TCAAGGTTTTGAGTGCTTCAGC 59.641 45.455 0.00 0.00 38.37 4.26
1812 1964 1.952296 AGGTTTTGAGTGCTTCAGCTG 59.048 47.619 7.63 7.63 42.66 4.24
1813 1965 1.601412 GGTTTTGAGTGCTTCAGCTGC 60.601 52.381 9.47 0.00 42.66 5.25
1816 1968 0.949397 TTGAGTGCTTCAGCTGCAAG 59.051 50.000 9.47 14.26 42.41 4.01
1838 1990 5.523369 AGCACTATTTTTCAGTGTTTCAGC 58.477 37.500 4.57 0.00 44.30 4.26
1847 2000 3.202906 TCAGTGTTTCAGCTGTACAACC 58.797 45.455 20.52 12.44 34.57 3.77
1879 2032 3.006217 TCAGTTGTCTGACTCTGACCATG 59.994 47.826 22.16 8.82 44.58 3.66
1881 2034 3.006323 AGTTGTCTGACTCTGACCATGAC 59.994 47.826 9.51 7.04 32.56 3.06
1882 2035 1.895798 TGTCTGACTCTGACCATGACC 59.104 52.381 9.51 0.00 32.56 4.02
1883 2036 1.895798 GTCTGACTCTGACCATGACCA 59.104 52.381 0.00 0.00 0.00 4.02
1884 2037 2.499289 GTCTGACTCTGACCATGACCAT 59.501 50.000 0.00 0.00 0.00 3.55
1885 2038 3.055530 GTCTGACTCTGACCATGACCATT 60.056 47.826 0.00 0.00 0.00 3.16
1886 2039 3.055602 TCTGACTCTGACCATGACCATTG 60.056 47.826 0.00 0.00 0.00 2.82
1887 2040 2.905736 TGACTCTGACCATGACCATTGA 59.094 45.455 0.00 0.00 0.00 2.57
1888 2041 3.520721 TGACTCTGACCATGACCATTGAT 59.479 43.478 0.00 0.00 0.00 2.57
1902 2058 3.284617 CCATTGATGATGCAGTTCTCCA 58.715 45.455 0.00 0.00 34.25 3.86
1904 2060 4.202020 CCATTGATGATGCAGTTCTCCAAG 60.202 45.833 0.00 0.00 34.25 3.61
1958 2114 1.210413 CACGACAGAGTGGGACGAG 59.790 63.158 0.00 0.00 38.40 4.18
1982 2138 1.420430 TCCAGTGGTCGAAGAAGGTT 58.580 50.000 9.54 0.00 39.69 3.50
1988 2144 1.235281 GGTCGAAGAAGGTTGCCCAC 61.235 60.000 0.00 0.00 39.69 4.61
2042 2209 1.870055 TAACTGTCCGTCCACTCGCC 61.870 60.000 0.00 0.00 0.00 5.54
2249 2551 1.033574 ACGTCCCTCTAGCTGTATGC 58.966 55.000 0.00 0.00 43.29 3.14
2250 2552 1.032794 CGTCCCTCTAGCTGTATGCA 58.967 55.000 0.00 0.00 45.94 3.96
2251 2553 1.615883 CGTCCCTCTAGCTGTATGCAT 59.384 52.381 3.79 3.79 45.94 3.96
2252 2554 2.608998 CGTCCCTCTAGCTGTATGCATG 60.609 54.545 10.16 0.00 45.94 4.06
2319 2634 2.014010 AGGTTGTGGATGCATGGTTT 57.986 45.000 2.46 0.00 0.00 3.27
2329 2644 2.969821 TGCATGGTTTCAGGTACCTT 57.030 45.000 13.15 0.00 36.60 3.50
2424 2739 0.521735 GACATCACCGCCAGGAAAAC 59.478 55.000 0.00 0.00 41.02 2.43
2459 2776 2.557924 CACAAGTAAGCATGCCTTCCAA 59.442 45.455 15.66 0.00 34.95 3.53
2474 2791 5.221986 TGCCTTCCAAGATGATGCATAGTAT 60.222 40.000 0.00 0.00 0.00 2.12
2496 2972 1.199097 GTACGTTTCCAGGCAACATGG 59.801 52.381 2.68 0.00 39.33 3.66
2636 3117 1.734465 CTGAATTCTTCACTCCGGTGC 59.266 52.381 7.05 0.00 42.72 5.01
2638 3119 0.673644 AATTCTTCACTCCGGTGCCG 60.674 55.000 0.00 3.25 42.72 5.69
2764 3301 1.089920 GCACATGATCCAGGTGTGTC 58.910 55.000 12.33 0.09 46.05 3.67
2774 3311 0.877071 CAGGTGTGTCTGATTGGTGC 59.123 55.000 0.00 0.00 36.93 5.01
2799 3348 7.092079 CACATGATTGAGATTTTTGGCTTGTA 58.908 34.615 0.00 0.00 0.00 2.41
2902 3452 6.779115 ATGCGTCGATGTAAGCATATAAAA 57.221 33.333 6.48 0.00 46.93 1.52
2903 3453 6.779115 TGCGTCGATGTAAGCATATAAAAT 57.221 33.333 6.48 0.00 35.07 1.82
2904 3454 7.876896 TGCGTCGATGTAAGCATATAAAATA 57.123 32.000 6.48 0.00 35.07 1.40
2926 3476 2.169352 AGTCCAATTATCGAGCAGCAGT 59.831 45.455 0.00 0.00 0.00 4.40
3061 3613 3.110178 GCGCAGTACGTGGTCCAC 61.110 66.667 12.40 12.40 46.11 4.02
3109 3664 5.343307 AGGTGATTGTGCAGTTTTTCTTT 57.657 34.783 0.00 0.00 0.00 2.52
3111 3666 5.581874 AGGTGATTGTGCAGTTTTTCTTTTG 59.418 36.000 0.00 0.00 0.00 2.44
3112 3667 5.351189 GGTGATTGTGCAGTTTTTCTTTTGT 59.649 36.000 0.00 0.00 0.00 2.83
3113 3668 6.455513 GGTGATTGTGCAGTTTTTCTTTTGTC 60.456 38.462 0.00 0.00 0.00 3.18
3114 3669 6.090628 GTGATTGTGCAGTTTTTCTTTTGTCA 59.909 34.615 0.00 0.00 0.00 3.58
3115 3670 6.310956 TGATTGTGCAGTTTTTCTTTTGTCAG 59.689 34.615 0.00 0.00 0.00 3.51
3116 3671 5.132897 TGTGCAGTTTTTCTTTTGTCAGT 57.867 34.783 0.00 0.00 0.00 3.41
3117 3672 5.537188 TGTGCAGTTTTTCTTTTGTCAGTT 58.463 33.333 0.00 0.00 0.00 3.16
3118 3673 5.988561 TGTGCAGTTTTTCTTTTGTCAGTTT 59.011 32.000 0.00 0.00 0.00 2.66
3119 3674 7.148641 TGTGCAGTTTTTCTTTTGTCAGTTTA 58.851 30.769 0.00 0.00 0.00 2.01
3120 3675 7.653713 TGTGCAGTTTTTCTTTTGTCAGTTTAA 59.346 29.630 0.00 0.00 0.00 1.52
3121 3676 8.491950 GTGCAGTTTTTCTTTTGTCAGTTTAAA 58.508 29.630 0.00 0.00 0.00 1.52
3122 3677 8.491950 TGCAGTTTTTCTTTTGTCAGTTTAAAC 58.508 29.630 10.47 10.47 0.00 2.01
3146 3701 6.761242 ACTTTAAAGCTTCAATGTCAAAACCC 59.239 34.615 15.24 0.00 0.00 4.11
3222 3793 0.039165 GCGACAAAGAAAAGCCAGGG 60.039 55.000 0.00 0.00 0.00 4.45
3241 3812 1.153686 GGCCGTTTCGAGGTACCTC 60.154 63.158 29.18 29.18 39.55 3.85
3333 3913 6.485313 TGTGTTAGTGAAGAGGGTTATTGTTG 59.515 38.462 0.00 0.00 0.00 3.33
3451 4031 7.279750 ACCGTACCTTCAAAATAATTGTGTT 57.720 32.000 0.00 0.00 0.00 3.32
3454 4034 7.650104 CCGTACCTTCAAAATAATTGTGTTTGT 59.350 33.333 9.01 0.00 34.55 2.83
3532 4112 1.243342 TTGCCAATGCGGACAAGGAG 61.243 55.000 0.00 0.00 41.78 3.69
3603 4183 5.497474 TGCAAGAGGATAAACCCTAGTTTC 58.503 41.667 0.00 0.00 42.67 2.78
3609 4192 8.855804 AGAGGATAAACCCTAGTTTCTATCAA 57.144 34.615 0.00 0.00 42.67 2.57
3610 4193 9.453830 AGAGGATAAACCCTAGTTTCTATCAAT 57.546 33.333 0.00 0.00 42.67 2.57
3611 4194 9.495572 GAGGATAAACCCTAGTTTCTATCAATG 57.504 37.037 0.00 0.00 42.67 2.82
3612 4195 8.440771 AGGATAAACCCTAGTTTCTATCAATGG 58.559 37.037 0.00 0.00 42.67 3.16
3616 4199 8.753497 AAACCCTAGTTTCTATCAATGGATTC 57.247 34.615 0.00 0.00 42.67 2.52
3618 4201 7.740805 ACCCTAGTTTCTATCAATGGATTCTC 58.259 38.462 0.00 0.00 34.89 2.87
3621 8896 8.310382 CCTAGTTTCTATCAATGGATTCTCGAT 58.690 37.037 0.00 0.00 34.89 3.59
3630 8905 7.695480 TCAATGGATTCTCGATTTTAAACCA 57.305 32.000 0.00 0.00 0.00 3.67
3634 8909 4.398044 GGATTCTCGATTTTAAACCAGCCA 59.602 41.667 0.00 0.00 0.00 4.75
3638 8913 1.818674 CGATTTTAAACCAGCCAGGCT 59.181 47.619 8.70 8.70 43.14 4.58
3644 8919 1.852633 AAACCAGCCAGGCTAATTCC 58.147 50.000 15.64 0.00 43.14 3.01
3648 8923 1.098050 CAGCCAGGCTAATTCCACAC 58.902 55.000 15.64 0.00 36.40 3.82
3656 8931 2.939103 GGCTAATTCCACACAGCTACAG 59.061 50.000 0.00 0.00 34.41 2.74
3668 8946 1.206610 CAGCTACAGCATCTGGACACT 59.793 52.381 3.70 0.00 45.16 3.55
3673 8951 2.529632 ACAGCATCTGGACACTACTGA 58.470 47.619 0.00 0.00 35.51 3.41
3689 8969 2.582052 ACTGAACAAAGCCCATTTCGA 58.418 42.857 0.00 0.00 0.00 3.71
3690 8970 2.955660 ACTGAACAAAGCCCATTTCGAA 59.044 40.909 0.00 0.00 0.00 3.71
3692 8972 2.288152 TGAACAAAGCCCATTTCGAAGC 60.288 45.455 0.00 0.00 0.00 3.86
3694 8974 1.270550 ACAAAGCCCATTTCGAAGCTG 59.729 47.619 10.04 6.61 35.30 4.24
3701 8981 5.376625 AGCCCATTTCGAAGCTGAATTATA 58.623 37.500 8.66 0.00 33.41 0.98
3712 8992 6.350528 CGAAGCTGAATTATAGGCCAGATAGA 60.351 42.308 5.01 0.00 0.00 1.98
3730 9010 6.998074 CAGATAGACTAATGTTAATTGGGCCA 59.002 38.462 0.00 0.00 32.75 5.36
3734 9014 4.352893 ACTAATGTTAATTGGGCCAAGCT 58.647 39.130 25.16 16.17 0.00 3.74
3747 9027 2.618442 CCAAGCTTGGCCTTTTTCAA 57.382 45.000 31.70 0.00 42.21 2.69
3748 9028 2.212652 CCAAGCTTGGCCTTTTTCAAC 58.787 47.619 31.70 0.00 42.21 3.18
3749 9029 2.419851 CCAAGCTTGGCCTTTTTCAACA 60.420 45.455 31.70 0.00 42.21 3.33
3753 9033 4.525996 AGCTTGGCCTTTTTCAACATTTT 58.474 34.783 3.32 0.00 0.00 1.82
3754 9034 4.949238 AGCTTGGCCTTTTTCAACATTTTT 59.051 33.333 3.32 0.00 0.00 1.94
3755 9035 5.066375 AGCTTGGCCTTTTTCAACATTTTTC 59.934 36.000 3.32 0.00 0.00 2.29
3756 9036 5.163673 GCTTGGCCTTTTTCAACATTTTTCA 60.164 36.000 3.32 0.00 0.00 2.69
3757 9037 5.809719 TGGCCTTTTTCAACATTTTTCAC 57.190 34.783 3.32 0.00 0.00 3.18
3758 9038 5.495640 TGGCCTTTTTCAACATTTTTCACT 58.504 33.333 3.32 0.00 0.00 3.41
3759 9039 5.584251 TGGCCTTTTTCAACATTTTTCACTC 59.416 36.000 3.32 0.00 0.00 3.51
3760 9040 5.276820 GGCCTTTTTCAACATTTTTCACTCG 60.277 40.000 0.00 0.00 0.00 4.18
3762 9042 6.200854 GCCTTTTTCAACATTTTTCACTCGAT 59.799 34.615 0.00 0.00 0.00 3.59
3763 9043 7.254421 GCCTTTTTCAACATTTTTCACTCGATT 60.254 33.333 0.00 0.00 0.00 3.34
3764 9044 8.603181 CCTTTTTCAACATTTTTCACTCGATTT 58.397 29.630 0.00 0.00 0.00 2.17
3765 9045 9.971744 CTTTTTCAACATTTTTCACTCGATTTT 57.028 25.926 0.00 0.00 0.00 1.82
3851 9138 5.506815 CCACACAGGAAATATATTGCAGCTG 60.507 44.000 10.11 10.11 41.22 4.24
3853 9140 5.653769 ACACAGGAAATATATTGCAGCTGTT 59.346 36.000 16.64 3.36 0.00 3.16
3870 9157 4.154195 AGCTGTTATTAAACACTTGCTCCG 59.846 41.667 0.00 0.00 39.23 4.63
3885 9172 1.429463 CTCCGTGTTCAGCTACAACC 58.571 55.000 5.48 0.00 0.00 3.77
3886 9173 0.319211 TCCGTGTTCAGCTACAACCG 60.319 55.000 5.48 7.90 0.00 4.44
3904 9193 6.518493 ACAACCGACTGTAACTCTCATAAAA 58.482 36.000 0.00 0.00 0.00 1.52
3911 9200 7.410942 CGACTGTAACTCTCATAAAAGCAACTC 60.411 40.741 0.00 0.00 0.00 3.01
3917 9209 6.779860 ACTCTCATAAAAGCAACTCCCTTTA 58.220 36.000 0.00 0.00 32.56 1.85
3923 9215 4.455070 AAAGCAACTCCCTTTAACCTCT 57.545 40.909 0.00 0.00 31.17 3.69
3927 9219 4.223255 AGCAACTCCCTTTAACCTCTAGAC 59.777 45.833 0.00 0.00 0.00 2.59
3945 9237 7.016268 CCTCTAGACTCTAGTGATTCCTCTACT 59.984 44.444 14.30 0.00 0.00 2.57
3957 9249 7.982354 AGTGATTCCTCTACTGTAACAAATAGC 59.018 37.037 0.00 0.00 0.00 2.97
3977 9269 8.644374 AATAGCAATTTTAACCACCAGAGTAA 57.356 30.769 0.00 0.00 0.00 2.24
3987 9279 3.074412 CCACCAGAGTAACACACAATCC 58.926 50.000 0.00 0.00 0.00 3.01
4048 9495 3.672767 AAGTACTGAAACCTGGGTACG 57.327 47.619 0.00 0.00 39.33 3.67
4112 9559 0.675633 ATGGTGTTTCTGGTTGCAGC 59.324 50.000 0.00 0.00 0.00 5.25
4150 9597 2.225369 CCAACTTTTTCCTCCATCCCCT 60.225 50.000 0.00 0.00 0.00 4.79
4151 9598 3.510459 CAACTTTTTCCTCCATCCCCTT 58.490 45.455 0.00 0.00 0.00 3.95
4152 9599 4.510205 CCAACTTTTTCCTCCATCCCCTTA 60.510 45.833 0.00 0.00 0.00 2.69
4181 9628 2.542597 CATGGAATTGATTTGCACGGG 58.457 47.619 0.00 0.00 38.59 5.28
4183 9630 0.175531 GGAATTGATTTGCACGGGGG 59.824 55.000 0.00 0.00 0.00 5.40
4221 9668 2.580326 CGTACGCCCGCACGTTAT 60.580 61.111 0.52 0.00 45.75 1.89
4261 9708 5.198207 GTTATGGTGGCAATAACTAAGGGT 58.802 41.667 12.64 0.00 37.47 4.34
4271 9718 2.409948 AACTAAGGGTGCATGAGAGC 57.590 50.000 0.00 0.00 0.00 4.09
4276 9723 3.200593 GGTGCATGAGAGCTGGCG 61.201 66.667 0.00 0.00 34.99 5.69
4283 9730 1.598132 CATGAGAGCTGGCGAGAAATG 59.402 52.381 0.00 0.00 0.00 2.32
4284 9731 0.610174 TGAGAGCTGGCGAGAAATGT 59.390 50.000 0.00 0.00 0.00 2.71
4285 9732 1.824852 TGAGAGCTGGCGAGAAATGTA 59.175 47.619 0.00 0.00 0.00 2.29
4286 9733 2.197577 GAGAGCTGGCGAGAAATGTAC 58.802 52.381 0.00 0.00 0.00 2.90
4287 9734 1.827969 AGAGCTGGCGAGAAATGTACT 59.172 47.619 0.00 0.00 0.00 2.73
4288 9735 2.159170 AGAGCTGGCGAGAAATGTACTC 60.159 50.000 0.00 0.00 0.00 2.59
4289 9736 1.134670 AGCTGGCGAGAAATGTACTCC 60.135 52.381 0.00 0.00 0.00 3.85
4290 9737 1.941325 CTGGCGAGAAATGTACTCCC 58.059 55.000 0.00 0.00 0.00 4.30
4291 9738 1.482593 CTGGCGAGAAATGTACTCCCT 59.517 52.381 0.00 0.00 0.00 4.20
4292 9739 1.480954 TGGCGAGAAATGTACTCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
4293 9740 1.202545 GGCGAGAAATGTACTCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
4294 9741 1.536284 GCGAGAAATGTACTCCCTCCG 60.536 57.143 0.00 0.00 0.00 4.63
4295 9742 1.749634 CGAGAAATGTACTCCCTCCGT 59.250 52.381 0.00 0.00 0.00 4.69
4296 9743 2.165845 CGAGAAATGTACTCCCTCCGTT 59.834 50.000 0.00 0.00 0.00 4.44
4297 9744 3.734293 CGAGAAATGTACTCCCTCCGTTC 60.734 52.174 0.00 0.00 0.00 3.95
4298 9745 2.500504 AGAAATGTACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
4299 9746 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
4300 9747 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
4301 9748 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4302 9749 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4303 9750 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4304 9751 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4305 9752 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4306 9753 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
4307 9754 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4308 9755 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4309 9756 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4310 9757 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4311 9758 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4312 9759 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4313 9760 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4314 9761 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4315 9762 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4316 9763 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4317 9764 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4318 9765 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4342 9789 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
4343 9790 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
4344 9791 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
4345 9792 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
4346 9793 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
4348 9795 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
4349 9796 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
4388 9835 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4389 9836 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4390 9837 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4391 9838 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4392 9839 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4393 9840 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4394 9841 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4395 9842 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4396 9843 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4397 9844 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4398 9845 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4399 9846 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4400 9847 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4401 9848 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4402 9849 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4403 9850 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4404 9851 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4405 9852 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4406 9853 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4407 9854 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4408 9855 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4409 9856 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4410 9857 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4411 9858 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4412 9859 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
4413 9860 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
4414 9861 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
4415 9862 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
4416 9863 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
4417 9864 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
4418 9865 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
4419 9866 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
4420 9867 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
4421 9868 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
4422 9869 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
4423 9870 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
4424 9871 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
4425 9872 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
4426 9873 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
4427 9874 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
4428 9875 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
4429 9876 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
4430 9877 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
4431 9878 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
4432 9879 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
4434 9881 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
4435 9882 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4436 9883 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
4437 9884 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
4438 9885 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
4439 9886 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
4440 9887 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4441 9888 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4442 9889 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4443 9890 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4444 9891 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.588528 AGAGATATTGGAGTGCTTCCTCTC 59.411 45.833 12.69 12.69 46.92 3.20
30 31 5.070313 AGGAAGAGAGATATTGGAGTGCTTC 59.930 44.000 0.00 0.00 0.00 3.86
117 120 5.876357 ACACCTATCCAGTTTGCTTCTTTA 58.124 37.500 0.00 0.00 0.00 1.85
198 214 5.526111 TCCGTGTTATCTATTTTGCTTAGCC 59.474 40.000 0.29 0.00 0.00 3.93
261 277 0.673985 TCGCCATTATCGAGGAGGTG 59.326 55.000 0.00 0.00 0.00 4.00
277 293 3.665871 GCAATCAAGACTTTTTCTGTCGC 59.334 43.478 0.00 0.00 39.24 5.19
283 299 6.970484 TCCTTGTAGCAATCAAGACTTTTTC 58.030 36.000 14.16 0.00 43.17 2.29
307 323 6.645003 GCCTCAAAAACTTCGGAAACATTTAT 59.355 34.615 0.00 0.00 0.00 1.40
315 331 8.740123 TTATATATGCCTCAAAAACTTCGGAA 57.260 30.769 0.00 0.00 0.00 4.30
319 335 9.801873 TTTGCTTATATATGCCTCAAAAACTTC 57.198 29.630 15.78 0.00 0.00 3.01
322 338 8.197439 ACCTTTGCTTATATATGCCTCAAAAAC 58.803 33.333 15.78 0.00 0.00 2.43
334 350 6.462487 CCTCTCGTCCAACCTTTGCTTATATA 60.462 42.308 0.00 0.00 0.00 0.86
335 351 5.353394 TCTCGTCCAACCTTTGCTTATAT 57.647 39.130 0.00 0.00 0.00 0.86
343 359 1.004918 CGCCTCTCGTCCAACCTTT 60.005 57.895 0.00 0.00 0.00 3.11
350 366 3.063084 ACTGTCCGCCTCTCGTCC 61.063 66.667 0.00 0.00 36.19 4.79
361 377 2.930562 ACCAGGGCTCCACTGTCC 60.931 66.667 0.00 0.00 34.16 4.02
362 378 2.177594 CTCACCAGGGCTCCACTGTC 62.178 65.000 0.00 0.00 34.16 3.51
363 379 2.122413 TCACCAGGGCTCCACTGT 60.122 61.111 0.00 0.00 34.16 3.55
366 382 4.416738 GGCTCACCAGGGCTCCAC 62.417 72.222 0.00 0.00 35.26 4.02
410 432 0.549950 CAGGTGAGCCATCTCCCATT 59.450 55.000 0.00 0.00 39.50 3.16
418 440 0.615331 ATCGTCAACAGGTGAGCCAT 59.385 50.000 0.00 0.00 36.74 4.40
425 447 3.323979 AGTTTAGGACATCGTCAACAGGT 59.676 43.478 0.00 0.00 33.68 4.00
429 451 5.341617 CCTCTAGTTTAGGACATCGTCAAC 58.658 45.833 0.00 0.00 36.08 3.18
436 458 6.088541 TGAGTACCCTCTAGTTTAGGACAT 57.911 41.667 0.00 0.00 38.61 3.06
440 462 5.008811 CGTGATGAGTACCCTCTAGTTTAGG 59.991 48.000 0.00 0.00 38.61 2.69
443 465 4.342359 ACGTGATGAGTACCCTCTAGTTT 58.658 43.478 0.00 0.00 38.61 2.66
446 468 2.544686 CGACGTGATGAGTACCCTCTAG 59.455 54.545 0.00 0.00 38.61 2.43
450 472 1.093159 GACGACGTGATGAGTACCCT 58.907 55.000 4.58 0.00 0.00 4.34
467 489 0.957395 TACACACGGACTCGGGAGAC 60.957 60.000 2.08 0.00 43.65 3.36
495 517 1.621992 CTAAGCTATGCCCTCGAGGA 58.378 55.000 33.39 14.72 38.24 3.71
517 539 1.142465 AGCTATCCTTGACATGCCCAG 59.858 52.381 0.00 0.00 0.00 4.45
572 594 9.236006 GGTGAATATTGATTGCTATTCCATACT 57.764 33.333 0.00 0.00 34.75 2.12
573 595 8.462016 GGGTGAATATTGATTGCTATTCCATAC 58.538 37.037 0.00 0.00 34.75 2.39
574 596 8.393259 AGGGTGAATATTGATTGCTATTCCATA 58.607 33.333 0.00 0.00 34.75 2.74
575 597 7.243824 AGGGTGAATATTGATTGCTATTCCAT 58.756 34.615 0.00 0.00 34.75 3.41
576 598 6.613699 AGGGTGAATATTGATTGCTATTCCA 58.386 36.000 0.00 0.00 34.75 3.53
577 599 7.121315 GGTAGGGTGAATATTGATTGCTATTCC 59.879 40.741 0.00 0.00 34.75 3.01
578 600 7.665559 TGGTAGGGTGAATATTGATTGCTATTC 59.334 37.037 0.00 0.00 35.72 1.75
579 601 7.526041 TGGTAGGGTGAATATTGATTGCTATT 58.474 34.615 0.00 0.00 0.00 1.73
580 602 7.090319 TGGTAGGGTGAATATTGATTGCTAT 57.910 36.000 0.00 0.00 0.00 2.97
581 603 6.508030 TGGTAGGGTGAATATTGATTGCTA 57.492 37.500 0.00 0.00 0.00 3.49
582 604 5.387113 TGGTAGGGTGAATATTGATTGCT 57.613 39.130 0.00 0.00 0.00 3.91
583 605 6.127479 TGTTTGGTAGGGTGAATATTGATTGC 60.127 38.462 0.00 0.00 0.00 3.56
584 606 7.257722 GTGTTTGGTAGGGTGAATATTGATTG 58.742 38.462 0.00 0.00 0.00 2.67
585 607 6.094881 CGTGTTTGGTAGGGTGAATATTGATT 59.905 38.462 0.00 0.00 0.00 2.57
586 608 5.588648 CGTGTTTGGTAGGGTGAATATTGAT 59.411 40.000 0.00 0.00 0.00 2.57
587 609 4.938832 CGTGTTTGGTAGGGTGAATATTGA 59.061 41.667 0.00 0.00 0.00 2.57
588 610 4.438200 GCGTGTTTGGTAGGGTGAATATTG 60.438 45.833 0.00 0.00 0.00 1.90
589 611 3.692593 GCGTGTTTGGTAGGGTGAATATT 59.307 43.478 0.00 0.00 0.00 1.28
590 612 3.275999 GCGTGTTTGGTAGGGTGAATAT 58.724 45.455 0.00 0.00 0.00 1.28
591 613 2.616001 GGCGTGTTTGGTAGGGTGAATA 60.616 50.000 0.00 0.00 0.00 1.75
592 614 1.530323 GCGTGTTTGGTAGGGTGAAT 58.470 50.000 0.00 0.00 0.00 2.57
593 615 0.535553 GGCGTGTTTGGTAGGGTGAA 60.536 55.000 0.00 0.00 0.00 3.18
594 616 1.071814 GGCGTGTTTGGTAGGGTGA 59.928 57.895 0.00 0.00 0.00 4.02
595 617 1.969589 GGGCGTGTTTGGTAGGGTG 60.970 63.158 0.00 0.00 0.00 4.61
596 618 1.785353 ATGGGCGTGTTTGGTAGGGT 61.785 55.000 0.00 0.00 0.00 4.34
597 619 0.253610 TATGGGCGTGTTTGGTAGGG 59.746 55.000 0.00 0.00 0.00 3.53
598 620 2.341846 ATATGGGCGTGTTTGGTAGG 57.658 50.000 0.00 0.00 0.00 3.18
599 621 3.751175 CCATATATGGGCGTGTTTGGTAG 59.249 47.826 22.31 0.00 44.31 3.18
600 622 3.745799 CCATATATGGGCGTGTTTGGTA 58.254 45.455 22.31 0.00 44.31 3.25
601 623 2.582052 CCATATATGGGCGTGTTTGGT 58.418 47.619 22.31 0.00 44.31 3.67
613 635 4.579869 GCTACCTTGGACCACCATATATG 58.420 47.826 5.68 5.68 46.34 1.78
614 636 3.260884 CGCTACCTTGGACCACCATATAT 59.739 47.826 0.00 0.00 46.34 0.86
615 637 2.631062 CGCTACCTTGGACCACCATATA 59.369 50.000 0.00 0.00 46.34 0.86
616 638 1.416401 CGCTACCTTGGACCACCATAT 59.584 52.381 0.00 0.00 46.34 1.78
617 639 0.828022 CGCTACCTTGGACCACCATA 59.172 55.000 0.00 0.00 46.34 2.74
618 640 1.198759 ACGCTACCTTGGACCACCAT 61.199 55.000 0.00 0.00 46.34 3.55
619 641 1.839747 ACGCTACCTTGGACCACCA 60.840 57.895 0.00 0.00 45.34 4.17
620 642 1.375523 CACGCTACCTTGGACCACC 60.376 63.158 0.00 0.00 0.00 4.61
621 643 1.375523 CCACGCTACCTTGGACCAC 60.376 63.158 0.00 0.00 32.32 4.16
622 644 1.534476 TCCACGCTACCTTGGACCA 60.534 57.895 0.00 0.00 34.74 4.02
623 645 1.218316 CTCCACGCTACCTTGGACC 59.782 63.158 0.00 0.00 34.74 4.46
624 646 1.448013 GCTCCACGCTACCTTGGAC 60.448 63.158 0.00 0.00 34.74 4.02
625 647 2.978824 GCTCCACGCTACCTTGGA 59.021 61.111 0.00 0.00 37.08 3.53
654 676 1.228552 TGGAGGGCTTTGTTGGAGC 60.229 57.895 0.00 0.00 39.41 4.70
655 677 1.246737 GCTGGAGGGCTTTGTTGGAG 61.247 60.000 0.00 0.00 0.00 3.86
656 678 1.228552 GCTGGAGGGCTTTGTTGGA 60.229 57.895 0.00 0.00 0.00 3.53
657 679 1.114722 TTGCTGGAGGGCTTTGTTGG 61.115 55.000 0.00 0.00 0.00 3.77
658 680 0.752054 TTTGCTGGAGGGCTTTGTTG 59.248 50.000 0.00 0.00 0.00 3.33
659 681 1.138859 GTTTTGCTGGAGGGCTTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
660 682 0.752658 GTTTTGCTGGAGGGCTTTGT 59.247 50.000 0.00 0.00 0.00 2.83
668 690 5.702349 AAATCTGAGAAGTTTTGCTGGAG 57.298 39.130 0.00 0.00 0.00 3.86
682 704 9.587772 CGGGTATATATTGGAAGTAAATCTGAG 57.412 37.037 0.00 0.00 0.00 3.35
683 705 8.038944 GCGGGTATATATTGGAAGTAAATCTGA 58.961 37.037 0.00 0.00 0.00 3.27
684 706 7.822334 TGCGGGTATATATTGGAAGTAAATCTG 59.178 37.037 0.00 0.00 0.00 2.90
685 707 7.913789 TGCGGGTATATATTGGAAGTAAATCT 58.086 34.615 0.00 0.00 0.00 2.40
686 708 8.556213 TTGCGGGTATATATTGGAAGTAAATC 57.444 34.615 0.00 0.00 0.00 2.17
687 709 8.927675 TTTGCGGGTATATATTGGAAGTAAAT 57.072 30.769 0.00 0.00 0.00 1.40
688 710 8.212312 TCTTTGCGGGTATATATTGGAAGTAAA 58.788 33.333 0.00 0.00 0.00 2.01
689 711 7.737869 TCTTTGCGGGTATATATTGGAAGTAA 58.262 34.615 0.00 0.00 0.00 2.24
690 712 7.305813 TCTTTGCGGGTATATATTGGAAGTA 57.694 36.000 0.00 0.00 0.00 2.24
691 713 6.182507 TCTTTGCGGGTATATATTGGAAGT 57.817 37.500 0.00 0.00 0.00 3.01
692 714 7.504924 TTTCTTTGCGGGTATATATTGGAAG 57.495 36.000 0.00 0.00 0.00 3.46
693 715 7.883391 TTTTCTTTGCGGGTATATATTGGAA 57.117 32.000 0.00 0.00 0.00 3.53
694 716 7.883391 TTTTTCTTTGCGGGTATATATTGGA 57.117 32.000 0.00 0.00 0.00 3.53
721 743 9.174166 ACGCAGTTTTATATTGGAAGTAAATCT 57.826 29.630 0.00 0.00 37.78 2.40
727 749 5.250200 TCCACGCAGTTTTATATTGGAAGT 58.750 37.500 0.00 0.00 41.61 3.01
789 811 1.203313 GTTTCGTTCAAGCGACGGG 59.797 57.895 0.00 0.00 40.85 5.28
860 882 1.527034 GTGTGCATTGAGCCTTGAGA 58.473 50.000 0.00 0.00 44.83 3.27
867 889 0.682209 ATCCTGGGTGTGCATTGAGC 60.682 55.000 0.00 0.00 45.96 4.26
877 899 0.320247 GCTAGCATCGATCCTGGGTG 60.320 60.000 10.63 0.00 0.00 4.61
880 902 3.667497 TTTAGCTAGCATCGATCCTGG 57.333 47.619 18.83 0.00 0.00 4.45
881 903 5.053145 ACTTTTTAGCTAGCATCGATCCTG 58.947 41.667 18.83 1.07 0.00 3.86
882 904 5.069781 AGACTTTTTAGCTAGCATCGATCCT 59.930 40.000 18.83 0.00 0.00 3.24
913 935 0.543410 TTTGTCTAGGGGCGTGGAGA 60.543 55.000 0.00 0.00 0.00 3.71
914 936 0.108138 CTTTGTCTAGGGGCGTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
915 937 1.980052 CTTTGTCTAGGGGCGTGGA 59.020 57.895 0.00 0.00 0.00 4.02
930 953 3.481453 GGTGGAGAAGAAGACTTGCTTT 58.519 45.455 0.00 0.00 36.83 3.51
933 956 1.433534 CGGTGGAGAAGAAGACTTGC 58.566 55.000 0.00 0.00 36.39 4.01
967 990 3.428870 GTGTGCTCCGTATGTATGTATGC 59.571 47.826 0.00 0.00 0.00 3.14
968 991 4.616953 TGTGTGCTCCGTATGTATGTATG 58.383 43.478 0.00 0.00 0.00 2.39
969 992 4.929819 TGTGTGCTCCGTATGTATGTAT 57.070 40.909 0.00 0.00 0.00 2.29
970 993 4.929819 ATGTGTGCTCCGTATGTATGTA 57.070 40.909 0.00 0.00 0.00 2.29
971 994 3.819564 ATGTGTGCTCCGTATGTATGT 57.180 42.857 0.00 0.00 0.00 2.29
972 995 6.386654 TGTATATGTGTGCTCCGTATGTATG 58.613 40.000 0.00 0.00 0.00 2.39
973 996 6.584185 TGTATATGTGTGCTCCGTATGTAT 57.416 37.500 0.00 0.00 0.00 2.29
974 997 6.349860 GGATGTATATGTGTGCTCCGTATGTA 60.350 42.308 0.00 0.00 0.00 2.29
975 998 4.929819 TGTATATGTGTGCTCCGTATGT 57.070 40.909 0.00 0.00 0.00 2.29
976 999 4.864806 GGATGTATATGTGTGCTCCGTATG 59.135 45.833 0.00 0.00 0.00 2.39
977 1000 4.526650 TGGATGTATATGTGTGCTCCGTAT 59.473 41.667 0.00 0.00 0.00 3.06
978 1001 3.892588 TGGATGTATATGTGTGCTCCGTA 59.107 43.478 0.00 0.00 0.00 4.02
979 1002 2.698274 TGGATGTATATGTGTGCTCCGT 59.302 45.455 0.00 0.00 0.00 4.69
980 1003 3.385193 TGGATGTATATGTGTGCTCCG 57.615 47.619 0.00 0.00 0.00 4.63
981 1004 4.005650 CCATGGATGTATATGTGTGCTCC 58.994 47.826 5.56 0.00 0.00 4.70
986 1009 4.263199 CCAGCTCCATGGATGTATATGTGT 60.263 45.833 16.63 0.00 43.57 3.72
991 1014 1.276138 CGCCAGCTCCATGGATGTATA 59.724 52.381 16.63 0.00 43.57 1.47
993 1016 1.048160 TCGCCAGCTCCATGGATGTA 61.048 55.000 16.63 0.00 43.57 2.29
998 1021 3.473647 TCCTCGCCAGCTCCATGG 61.474 66.667 4.97 4.97 43.72 3.66
1008 1031 1.281899 CTTTCATTCTCGTCCTCGCC 58.718 55.000 0.00 0.00 36.96 5.54
1013 1036 0.647925 GCTCGCTTTCATTCTCGTCC 59.352 55.000 0.00 0.00 0.00 4.79
1132 1168 3.119291 CAGCTCAGAGTTAGCCAATACG 58.881 50.000 0.00 0.00 41.02 3.06
1171 1214 0.030638 CCCAAAGAAGGCAACACACG 59.969 55.000 0.00 0.00 41.41 4.49
1344 1417 4.062991 GTTCAGAAACTCAATGTACCGGT 58.937 43.478 13.98 13.98 32.36 5.28
1370 1452 6.727824 ACGAAGTTAAACTGGATCATTCAG 57.272 37.500 0.00 0.00 37.78 3.02
1552 1660 1.696063 ACTGAACATGCAAGGCAAGT 58.304 45.000 0.00 0.00 42.32 3.16
1560 1668 3.149196 GGAGAAGGAAACTGAACATGCA 58.851 45.455 0.00 0.00 42.68 3.96
1563 1671 4.065789 GTTCGGAGAAGGAAACTGAACAT 58.934 43.478 0.00 0.00 45.90 2.71
1568 1676 2.224314 GCTTGTTCGGAGAAGGAAACTG 59.776 50.000 2.32 0.00 45.90 3.16
1569 1677 2.104963 AGCTTGTTCGGAGAAGGAAACT 59.895 45.455 2.32 0.00 45.90 2.66
1570 1678 2.495084 AGCTTGTTCGGAGAAGGAAAC 58.505 47.619 2.32 0.00 45.90 2.78
1571 1679 2.930826 AGCTTGTTCGGAGAAGGAAA 57.069 45.000 2.32 0.00 45.90 3.13
1581 1693 1.634702 GGACTCTGCTAGCTTGTTCG 58.365 55.000 17.23 1.20 0.00 3.95
1591 1703 2.564947 AGATTGAAGAACGGACTCTGCT 59.435 45.455 0.00 0.00 0.00 4.24
1611 1739 6.564709 TGAAACAAGATCCAATCTGACAAG 57.435 37.500 0.00 0.00 40.13 3.16
1612 1740 7.528996 AATGAAACAAGATCCAATCTGACAA 57.471 32.000 0.00 0.00 40.13 3.18
1682 1834 0.909610 CCAGGAGGTACTTCCCAGCA 60.910 60.000 19.79 0.00 41.55 4.41
1688 1840 1.142097 GAGCGCCAGGAGGTACTTC 59.858 63.158 2.29 0.00 41.55 3.01
1729 1881 2.288334 TGGACAGTTGCATTGACATTGC 60.288 45.455 14.05 14.05 40.55 3.56
1759 1911 7.072076 ACCTCTTGTTAGTTCTTCTTCCCTTAA 59.928 37.037 0.00 0.00 0.00 1.85
1764 1916 6.526526 AGAACCTCTTGTTAGTTCTTCTTCC 58.473 40.000 0.00 0.00 46.08 3.46
1777 1929 5.261216 TCAAAACCTTGAAGAACCTCTTGT 58.739 37.500 0.00 0.00 38.65 3.16
1804 1956 3.844577 AAATAGTGCTTGCAGCTGAAG 57.155 42.857 20.43 18.11 42.97 3.02
1806 1958 3.569277 TGAAAAATAGTGCTTGCAGCTGA 59.431 39.130 20.43 0.00 42.97 4.26
1809 1961 3.671928 CACTGAAAAATAGTGCTTGCAGC 59.328 43.478 0.00 1.70 42.82 5.25
1818 1970 6.699575 ACAGCTGAAACACTGAAAAATAGT 57.300 33.333 23.35 0.00 37.35 2.12
1819 1971 7.639039 TGTACAGCTGAAACACTGAAAAATAG 58.361 34.615 23.35 0.00 37.35 1.73
1821 1973 6.449635 TGTACAGCTGAAACACTGAAAAAT 57.550 33.333 23.35 0.00 37.35 1.82
1847 2000 2.026915 TCAGACAACTGATGACCATGGG 60.027 50.000 18.09 0.00 46.55 4.00
1870 2023 4.457466 CATCATCAATGGTCATGGTCAGA 58.543 43.478 0.00 0.00 0.00 3.27
1871 2024 3.004419 GCATCATCAATGGTCATGGTCAG 59.996 47.826 0.00 0.00 35.77 3.51
1875 2028 2.956333 ACTGCATCATCAATGGTCATGG 59.044 45.455 0.00 0.00 35.77 3.66
1879 2032 3.314635 GGAGAACTGCATCATCAATGGTC 59.685 47.826 0.00 0.00 35.77 4.02
1881 2034 3.284617 TGGAGAACTGCATCATCAATGG 58.715 45.455 0.00 0.00 35.77 3.16
1882 2035 4.638865 TCTTGGAGAACTGCATCATCAATG 59.361 41.667 0.00 0.00 38.50 2.82
1883 2036 4.851843 TCTTGGAGAACTGCATCATCAAT 58.148 39.130 0.00 0.00 0.00 2.57
1884 2037 4.290711 TCTTGGAGAACTGCATCATCAA 57.709 40.909 0.00 0.00 0.00 2.57
1885 2038 3.986996 TCTTGGAGAACTGCATCATCA 57.013 42.857 0.00 0.00 0.00 3.07
1902 2058 2.061773 CAGCACGATGTCGAAGTTCTT 58.938 47.619 9.67 0.00 43.02 2.52
1904 2060 1.419374 ACAGCACGATGTCGAAGTTC 58.581 50.000 9.67 0.00 43.02 3.01
1958 2114 0.966920 TCTTCGACCACTGGAACTCC 59.033 55.000 0.71 0.00 0.00 3.85
1965 2121 0.868406 GCAACCTTCTTCGACCACTG 59.132 55.000 0.00 0.00 0.00 3.66
1982 2138 4.624364 CTGGCACTGACGTGGGCA 62.624 66.667 2.28 2.74 41.51 5.36
1988 2144 2.031012 TGCTTCCTGGCACTGACG 59.969 61.111 0.00 0.00 37.29 4.35
2042 2209 0.173481 TCGGAGTGGAATTCAGAGCG 59.827 55.000 7.93 0.00 0.00 5.03
2249 2551 2.093606 TCAGAGCTCAGAGGAAAGCATG 60.094 50.000 17.77 0.38 41.06 4.06
2250 2552 2.186243 TCAGAGCTCAGAGGAAAGCAT 58.814 47.619 17.77 0.00 41.06 3.79
2251 2553 1.637338 TCAGAGCTCAGAGGAAAGCA 58.363 50.000 17.77 0.00 41.06 3.91
2252 2554 2.758736 TTCAGAGCTCAGAGGAAAGC 57.241 50.000 17.77 0.00 38.84 3.51
2319 2634 2.492088 CTCACGATGTCAAGGTACCTGA 59.508 50.000 17.14 12.34 0.00 3.86
2329 2644 1.591703 GTGCCTCCTCACGATGTCA 59.408 57.895 0.00 0.00 0.00 3.58
2459 2776 8.244802 GGAAACGTACTATACTATGCATCATCT 58.755 37.037 0.19 0.00 0.00 2.90
2474 2791 3.331150 CATGTTGCCTGGAAACGTACTA 58.669 45.455 11.98 0.00 0.00 1.82
2496 2972 3.412386 ACCCAAATTCAGACTGTGCTAC 58.588 45.455 1.59 0.00 0.00 3.58
2636 3117 3.226347 GAGAAATCGCAAACAAAGACGG 58.774 45.455 0.00 0.00 0.00 4.79
2638 3119 6.753897 AAATGAGAAATCGCAAACAAAGAC 57.246 33.333 0.00 0.00 0.00 3.01
2697 3234 4.592192 ACCGGCGCCATCATCTCG 62.592 66.667 28.98 9.51 0.00 4.04
2764 3301 3.692593 TCTCAATCATGTGCACCAATCAG 59.307 43.478 15.69 1.81 0.00 2.90
2774 3311 5.929992 ACAAGCCAAAAATCTCAATCATGTG 59.070 36.000 0.00 0.00 0.00 3.21
2799 3348 4.163078 ACATCGTCCTTCCTTTCAGATCAT 59.837 41.667 0.00 0.00 0.00 2.45
2900 3450 5.822519 TGCTGCTCGATAATTGGACTTATTT 59.177 36.000 0.00 0.00 0.00 1.40
2902 3452 4.960938 TGCTGCTCGATAATTGGACTTAT 58.039 39.130 0.00 0.00 0.00 1.73
2903 3453 4.141937 ACTGCTGCTCGATAATTGGACTTA 60.142 41.667 0.00 0.00 0.00 2.24
2904 3454 3.201290 CTGCTGCTCGATAATTGGACTT 58.799 45.455 0.00 0.00 0.00 3.01
2915 3465 9.521503 GATATATTTTCATATACTGCTGCTCGA 57.478 33.333 0.00 0.00 31.75 4.04
2948 3498 8.904099 AAATGTTGTTAGGTACTCCTATATGC 57.096 34.615 0.00 0.00 44.68 3.14
3109 3664 9.915629 TTGAAGCTTTAAAGTTTAAACTGACAA 57.084 25.926 21.22 18.72 39.66 3.18
3119 3674 8.664798 GGTTTTGACATTGAAGCTTTAAAGTTT 58.335 29.630 16.13 16.13 31.84 2.66
3120 3675 7.279981 GGGTTTTGACATTGAAGCTTTAAAGTT 59.720 33.333 16.38 7.94 0.00 2.66
3121 3676 6.761242 GGGTTTTGACATTGAAGCTTTAAAGT 59.239 34.615 16.38 11.11 0.00 2.66
3122 3677 6.074356 CGGGTTTTGACATTGAAGCTTTAAAG 60.074 38.462 11.02 11.02 0.00 1.85
3146 3701 4.083855 TGAGCATAAGAAACAGAGCAAACG 60.084 41.667 0.00 0.00 0.00 3.60
3222 3793 2.125391 GGTACCTCGAAACGGCCC 60.125 66.667 4.06 0.00 0.00 5.80
3231 3802 7.657761 AGATGCAAAAATAATAGAGGTACCTCG 59.342 37.037 31.53 16.74 46.90 4.63
3408 3988 4.809426 ACGGTTGAAAGTAGTAGCATATGC 59.191 41.667 20.36 20.36 42.49 3.14
3429 4009 8.568732 ACAAACACAATTATTTTGAAGGTACG 57.431 30.769 10.85 0.00 34.84 3.67
3451 4031 5.529791 GCTCTTACCTATCATAAGCGACAA 58.470 41.667 0.00 0.00 30.95 3.18
3532 4112 2.508891 CGACGATCTGTTGGCGAGC 61.509 63.158 0.00 0.00 43.28 5.03
3603 4183 9.884465 GGTTTAAAATCGAGAATCCATTGATAG 57.116 33.333 0.00 0.00 0.00 2.08
3609 4192 5.067805 GGCTGGTTTAAAATCGAGAATCCAT 59.932 40.000 0.00 0.00 0.00 3.41
3610 4193 4.398044 GGCTGGTTTAAAATCGAGAATCCA 59.602 41.667 0.00 0.00 0.00 3.41
3611 4194 4.398044 TGGCTGGTTTAAAATCGAGAATCC 59.602 41.667 0.00 0.00 0.00 3.01
3612 4195 5.449177 CCTGGCTGGTTTAAAATCGAGAATC 60.449 44.000 1.62 0.00 0.00 2.52
3614 4197 3.756434 CCTGGCTGGTTTAAAATCGAGAA 59.244 43.478 1.62 0.00 0.00 2.87
3615 4198 3.343617 CCTGGCTGGTTTAAAATCGAGA 58.656 45.455 1.62 0.00 0.00 4.04
3616 4199 2.159379 GCCTGGCTGGTTTAAAATCGAG 60.159 50.000 12.43 0.00 38.35 4.04
3618 4201 1.818674 AGCCTGGCTGGTTTAAAATCG 59.181 47.619 22.71 0.00 37.57 3.34
3621 8896 4.221924 GGAATTAGCCTGGCTGGTTTAAAA 59.778 41.667 30.83 15.42 40.10 1.52
3630 8905 0.698238 TGTGTGGAATTAGCCTGGCT 59.302 50.000 26.52 26.52 43.41 4.75
3634 8909 2.571653 TGTAGCTGTGTGGAATTAGCCT 59.428 45.455 0.00 0.00 36.86 4.58
3638 8913 3.694043 TGCTGTAGCTGTGTGGAATTA 57.306 42.857 5.38 0.00 42.66 1.40
3644 8919 1.066645 TCCAGATGCTGTAGCTGTGTG 60.067 52.381 10.02 3.30 41.21 3.82
3648 8923 1.206610 AGTGTCCAGATGCTGTAGCTG 59.793 52.381 3.93 3.93 42.43 4.24
3656 8931 3.319137 TGTTCAGTAGTGTCCAGATGC 57.681 47.619 0.00 0.00 0.00 3.91
3668 8946 3.745799 TCGAAATGGGCTTTGTTCAGTA 58.254 40.909 0.00 0.00 0.00 2.74
3673 8951 1.963515 AGCTTCGAAATGGGCTTTGTT 59.036 42.857 3.95 0.00 0.00 2.83
3689 8969 6.500049 AGTCTATCTGGCCTATAATTCAGCTT 59.500 38.462 3.32 0.00 0.00 3.74
3690 8970 6.022315 AGTCTATCTGGCCTATAATTCAGCT 58.978 40.000 3.32 0.00 0.00 4.24
3692 8972 9.814899 CATTAGTCTATCTGGCCTATAATTCAG 57.185 37.037 3.32 0.00 0.00 3.02
3701 8981 7.227156 CCAATTAACATTAGTCTATCTGGCCT 58.773 38.462 3.32 0.00 0.00 5.19
3712 8992 4.352893 AGCTTGGCCCAATTAACATTAGT 58.647 39.130 0.00 0.00 0.00 2.24
3730 9010 3.843893 ATGTTGAAAAAGGCCAAGCTT 57.156 38.095 5.01 0.00 0.00 3.74
3734 9014 5.942826 AGTGAAAAATGTTGAAAAAGGCCAA 59.057 32.000 5.01 0.00 0.00 4.52
3830 9117 5.762825 ACAGCTGCAATATATTTCCTGTG 57.237 39.130 15.27 5.04 31.74 3.66
3860 9147 0.882042 AGCTGAACACGGAGCAAGTG 60.882 55.000 0.00 4.95 44.57 3.16
3870 9157 1.792949 CAGTCGGTTGTAGCTGAACAC 59.207 52.381 11.35 3.76 0.00 3.32
3885 9172 6.366332 AGTTGCTTTTATGAGAGTTACAGTCG 59.634 38.462 0.00 0.00 0.00 4.18
3886 9173 7.148557 GGAGTTGCTTTTATGAGAGTTACAGTC 60.149 40.741 0.00 0.00 0.00 3.51
3904 9193 4.223255 GTCTAGAGGTTAAAGGGAGTTGCT 59.777 45.833 0.00 0.00 0.00 3.91
3911 9200 6.424883 TCACTAGAGTCTAGAGGTTAAAGGG 58.575 44.000 29.87 5.49 0.00 3.95
3917 9209 6.159751 AGAGGAATCACTAGAGTCTAGAGGTT 59.840 42.308 29.87 24.45 38.81 3.50
3923 9215 7.440505 ACAGTAGAGGAATCACTAGAGTCTA 57.559 40.000 0.00 0.00 38.81 2.59
3927 9219 7.867305 TGTTACAGTAGAGGAATCACTAGAG 57.133 40.000 0.00 0.00 0.00 2.43
3945 9237 8.421784 TGGTGGTTAAAATTGCTATTTGTTACA 58.578 29.630 6.89 2.84 34.27 2.41
3957 9249 6.915843 GTGTGTTACTCTGGTGGTTAAAATTG 59.084 38.462 0.00 0.00 0.00 2.32
4035 9482 3.469739 TCTGTTTTCGTACCCAGGTTTC 58.530 45.455 0.00 0.00 0.00 2.78
4048 9495 9.334693 CATCTTGTTACTTATGCTTCTGTTTTC 57.665 33.333 0.00 0.00 0.00 2.29
4112 9559 0.972134 TGGTGAGACCTCTGCTCTTG 59.028 55.000 0.00 0.00 39.58 3.02
4181 9628 2.032681 GGGCGGCTATGATGACCC 59.967 66.667 9.56 0.00 0.00 4.46
4183 9630 2.283298 CATATGGGCGGCTATGATGAC 58.717 52.381 18.36 0.00 0.00 3.06
4221 9668 4.452114 CCATAACAATAATGCTCGCTGCTA 59.548 41.667 0.00 0.00 43.37 3.49
4261 9708 1.891722 TTCTCGCCAGCTCTCATGCA 61.892 55.000 0.00 0.00 34.99 3.96
4271 9718 1.482593 AGGGAGTACATTTCTCGCCAG 59.517 52.381 0.00 0.00 42.99 4.85
4276 9723 3.430513 GGAACGGAGGGAGTACATTTCTC 60.431 52.174 0.00 0.00 0.00 2.87
4283 9730 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4284 9731 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4285 9732 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4286 9733 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4287 9734 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4288 9735 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4289 9736 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4290 9737 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4291 9738 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4292 9739 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4316 9763 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
4317 9764 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
4318 9765 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
4319 9766 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
4320 9767 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
4321 9768 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
4322 9769 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
4323 9770 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
4366 9813 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4367 9814 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4368 9815 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4369 9816 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4370 9817 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4371 9818 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4372 9819 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4373 9820 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4374 9821 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4375 9822 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4376 9823 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4377 9824 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4378 9825 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4379 9826 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4380 9827 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4381 9828 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4382 9829 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4383 9830 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4384 9831 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4385 9832 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4386 9833 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4387 9834 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4388 9835 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
4389 9836 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
4390 9837 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
4391 9838 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
4392 9839 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
4393 9840 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
4394 9841 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
4395 9842 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
4396 9843 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
4397 9844 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
4398 9845 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
4399 9846 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
4400 9847 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
4401 9848 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
4402 9849 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
4403 9850 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
4404 9851 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
4405 9852 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
4406 9853 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
4408 9855 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
4409 9856 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
4410 9857 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
4411 9858 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
4412 9859 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
4413 9860 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
4414 9861 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4415 9862 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4416 9863 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4417 9864 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4418 9865 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4419 9866 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4420 9867 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4421 9868 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4422 9869 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4423 9870 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4424 9871 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4425 9872 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4426 9873 4.261952 GCTACTCCCTCCGTTCCTAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
4427 9874 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
4428 9875 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
4429 9876 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
4430 9877 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
4431 9878 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
4432 9879 0.684805 CTGCTACTCCCTCCGTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
4433 9880 0.971447 ACTGCTACTCCCTCCGTTCC 60.971 60.000 0.00 0.00 0.00 3.62
4434 9881 0.896226 AACTGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
4435 9882 2.100989 CTAACTGCTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
4436 9883 1.765230 CTAACTGCTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
4437 9884 0.386113 GCTAACTGCTACTCCCTCCG 59.614 60.000 0.00 0.00 38.95 4.63
4438 9885 1.486211 TGCTAACTGCTACTCCCTCC 58.514 55.000 0.00 0.00 43.37 4.30
4439 9886 3.828875 ATTGCTAACTGCTACTCCCTC 57.171 47.619 0.00 0.00 43.37 4.30
4440 9887 3.370953 CCAATTGCTAACTGCTACTCCCT 60.371 47.826 0.00 0.00 43.37 4.20
4441 9888 2.945668 CCAATTGCTAACTGCTACTCCC 59.054 50.000 0.00 0.00 43.37 4.30
4442 9889 2.356069 GCCAATTGCTAACTGCTACTCC 59.644 50.000 0.00 0.00 43.37 3.85
4443 9890 3.009723 TGCCAATTGCTAACTGCTACTC 58.990 45.455 0.00 0.00 43.37 2.59
4444 9891 3.012518 CTGCCAATTGCTAACTGCTACT 58.987 45.455 0.00 0.00 43.37 2.57
4504 9951 2.684881 CAATTACTCTGTCACCATGCCC 59.315 50.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.