Multiple sequence alignment - TraesCS7B01G472800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G472800 chr7B 100.000 5805 0 0 1 5805 728839428 728833624 0.000000e+00 10720.0
1 TraesCS7B01G472800 chr7B 90.679 751 28 17 4588 5318 701398347 701399075 0.000000e+00 961.0
2 TraesCS7B01G472800 chr7B 100.000 106 0 0 2596 2701 728836727 728836622 4.590000e-46 196.0
3 TraesCS7B01G472800 chr7B 100.000 106 0 0 2702 2807 728836833 728836728 4.590000e-46 196.0
4 TraesCS7B01G472800 chr7B 88.489 139 9 3 4059 4192 164619558 164619694 1.670000e-35 161.0
5 TraesCS7B01G472800 chr7A 88.703 2390 99 65 2710 5049 723306719 723304451 0.000000e+00 2760.0
6 TraesCS7B01G472800 chr7A 91.419 944 40 18 1642 2576 723307626 723306715 0.000000e+00 1256.0
7 TraesCS7B01G472800 chr7A 85.903 1213 86 26 472 1644 723308820 723307653 0.000000e+00 1214.0
8 TraesCS7B01G472800 chr7A 91.707 205 10 3 3010 3211 724282585 724282785 1.590000e-70 278.0
9 TraesCS7B01G472800 chr7A 91.220 205 11 3 3010 3211 637066792 637066992 7.410000e-69 272.0
10 TraesCS7B01G472800 chr7A 88.106 227 14 4 2357 2577 637066459 637066678 2.080000e-64 257.0
11 TraesCS7B01G472800 chr7A 87.665 227 14 5 2357 2577 724282253 724282471 9.660000e-63 252.0
12 TraesCS7B01G472800 chr7A 78.729 362 36 22 5431 5780 723304116 723303784 2.740000e-48 204.0
13 TraesCS7B01G472800 chr7A 93.878 98 5 1 2604 2701 723306719 723306623 4.690000e-31 147.0
14 TraesCS7B01G472800 chr7A 85.926 135 8 1 5047 5181 723304415 723304292 3.650000e-27 134.0
15 TraesCS7B01G472800 chr7A 95.122 82 4 0 2617 2698 712320880 712320961 4.720000e-26 130.0
16 TraesCS7B01G472800 chr7A 93.902 82 5 0 2617 2698 724282471 724282552 2.200000e-24 124.0
17 TraesCS7B01G472800 chr7A 92.683 82 6 0 2617 2698 637066678 637066759 1.020000e-22 119.0
18 TraesCS7B01G472800 chr7A 80.153 131 17 6 39 169 723309403 723309282 8.010000e-14 89.8
19 TraesCS7B01G472800 chr7D 89.371 2211 114 56 2726 4898 627433578 627431451 0.000000e+00 2669.0
20 TraesCS7B01G472800 chr7D 87.348 1644 104 53 38 1644 627436096 627434520 0.000000e+00 1788.0
21 TraesCS7B01G472800 chr7D 91.217 945 42 18 1642 2577 627434493 627433581 0.000000e+00 1247.0
22 TraesCS7B01G472800 chr7D 78.617 781 57 43 5058 5805 627431211 627430508 3.240000e-112 416.0
23 TraesCS7B01G472800 chr7D 95.977 174 6 1 2239 2411 636513724 636513897 1.230000e-71 281.0
24 TraesCS7B01G472800 chr7D 83.540 322 25 13 38 345 627440595 627440288 5.730000e-70 276.0
25 TraesCS7B01G472800 chr7D 94.737 95 4 1 2078 2171 350791321 350791415 4.690000e-31 147.0
26 TraesCS7B01G472800 chr7D 84.615 156 13 4 4059 4205 195416796 195416643 1.690000e-30 145.0
27 TraesCS7B01G472800 chr7D 92.157 102 2 2 4948 5049 627431443 627431348 7.840000e-29 139.0
28 TraesCS7B01G472800 chr7D 91.753 97 6 1 2604 2698 636513940 636514036 3.650000e-27 134.0
29 TraesCS7B01G472800 chr7D 92.857 84 4 1 2620 2701 627433578 627433495 2.840000e-23 121.0
30 TraesCS7B01G472800 chr4B 91.751 691 30 9 4588 5272 626990264 626990933 0.000000e+00 935.0
31 TraesCS7B01G472800 chr3D 87.853 354 18 7 2080 2431 596006371 596006701 5.450000e-105 392.0
32 TraesCS7B01G472800 chr3D 80.632 253 31 9 2167 2411 405719168 405719410 4.620000e-41 180.0
33 TraesCS7B01G472800 chr3D 94.737 95 4 1 2078 2171 19402705 19402799 4.690000e-31 147.0
34 TraesCS7B01G472800 chr3D 94.737 95 4 1 2078 2171 409591446 409591352 4.690000e-31 147.0
35 TraesCS7B01G472800 chrUn 92.195 205 9 3 3010 3211 146624506 146624706 3.420000e-72 283.0
36 TraesCS7B01G472800 chrUn 92.079 202 9 3 3013 3211 170964678 170964481 1.590000e-70 278.0
37 TraesCS7B01G472800 chrUn 91.220 205 11 3 3010 3211 151562451 151562651 7.410000e-69 272.0
38 TraesCS7B01G472800 chrUn 88.646 229 13 4 2355 2577 151562116 151562337 3.450000e-67 267.0
39 TraesCS7B01G472800 chrUn 88.210 229 14 4 2355 2577 146624171 146624392 1.600000e-65 261.0
40 TraesCS7B01G472800 chrUn 88.210 229 14 4 2355 2577 170965016 170964795 1.600000e-65 261.0
41 TraesCS7B01G472800 chr5B 91.707 205 10 3 3010 3211 382084 382284 1.590000e-70 278.0
42 TraesCS7B01G472800 chr5B 87.302 126 9 6 4072 4192 225208101 225207978 2.820000e-28 137.0
43 TraesCS7B01G472800 chr5A 91.584 202 10 3 3013 3211 178827217 178827020 7.410000e-69 272.0
44 TraesCS7B01G472800 chr5A 88.106 227 14 4 2357 2577 178827553 178827334 2.080000e-64 257.0
45 TraesCS7B01G472800 chr5A 88.106 227 14 5 2357 2577 568932064 568932283 2.080000e-64 257.0
46 TraesCS7B01G472800 chr5A 84.967 153 12 7 4059 4202 622169317 622169467 1.690000e-30 145.0
47 TraesCS7B01G472800 chr5A 93.902 82 5 0 2620 2701 178827331 178827250 2.200000e-24 124.0
48 TraesCS7B01G472800 chr3A 91.124 169 15 0 2719 2887 354898800 354898968 4.520000e-56 230.0
49 TraesCS7B01G472800 chr3A 80.000 255 30 12 2167 2411 354898320 354898563 1.000000e-37 169.0
50 TraesCS7B01G472800 chr3A 85.621 153 11 5 4059 4202 142213279 142213429 3.620000e-32 150.0
51 TraesCS7B01G472800 chr6A 90.798 163 15 0 2725 2887 87407606 87407444 9.790000e-53 219.0
52 TraesCS7B01G472800 chr6A 77.622 286 33 18 3917 4194 426298711 426298449 1.690000e-30 145.0
53 TraesCS7B01G472800 chr2A 90.184 163 16 0 2725 2887 714802958 714802796 4.560000e-51 213.0
54 TraesCS7B01G472800 chr2A 77.352 287 32 19 3917 4194 71487176 71486914 7.840000e-29 139.0
55 TraesCS7B01G472800 chr1A 90.123 162 16 0 2725 2886 212155372 212155211 1.640000e-50 211.0
56 TraesCS7B01G472800 chr1A 80.237 253 32 9 2167 2411 418722725 418722967 2.150000e-39 174.0
57 TraesCS7B01G472800 chr1A 85.256 156 12 7 4059 4205 488677484 488677331 3.620000e-32 150.0
58 TraesCS7B01G472800 chr4A 89.571 163 17 0 2725 2887 519261391 519261229 2.120000e-49 207.0
59 TraesCS7B01G472800 chr5D 93.750 128 7 1 2760 2887 25522151 25522277 2.140000e-44 191.0
60 TraesCS7B01G472800 chr5D 94.737 95 4 1 2078 2171 178105194 178105288 4.690000e-31 147.0
61 TraesCS7B01G472800 chr4D 80.159 252 32 9 2168 2411 201807911 201807670 7.730000e-39 172.0
62 TraesCS7B01G472800 chr4D 79.447 253 34 9 2167 2411 487245191 487245433 4.650000e-36 163.0
63 TraesCS7B01G472800 chr2D 94.737 95 4 1 2078 2171 617454302 617454396 4.690000e-31 147.0
64 TraesCS7B01G472800 chr2B 86.861 137 11 6 4061 4192 633595448 633595582 4.690000e-31 147.0
65 TraesCS7B01G472800 chr1D 93.684 95 5 1 2078 2171 26748028 26748122 2.180000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G472800 chr7B 728833624 728839428 5804 True 3704.000000 10720 100.000000 1 5805 3 chr7B.!!$R1 5804
1 TraesCS7B01G472800 chr7B 701398347 701399075 728 False 961.000000 961 90.679000 4588 5318 1 chr7B.!!$F2 730
2 TraesCS7B01G472800 chr7A 723303784 723309403 5619 True 829.257143 2760 86.387286 39 5780 7 chr7A.!!$R1 5741
3 TraesCS7B01G472800 chr7A 724282253 724282785 532 False 218.000000 278 91.091333 2357 3211 3 chr7A.!!$F3 854
4 TraesCS7B01G472800 chr7A 637066459 637066992 533 False 216.000000 272 90.669667 2357 3211 3 chr7A.!!$F2 854
5 TraesCS7B01G472800 chr7D 627430508 627436096 5588 True 1063.333333 2669 88.594500 38 5805 6 chr7D.!!$R3 5767
6 TraesCS7B01G472800 chr4B 626990264 626990933 669 False 935.000000 935 91.751000 4588 5272 1 chr4B.!!$F1 684
7 TraesCS7B01G472800 chrUn 146624171 146624706 535 False 272.000000 283 90.202500 2355 3211 2 chrUn.!!$F1 856
8 TraesCS7B01G472800 chrUn 151562116 151562651 535 False 269.500000 272 89.933000 2355 3211 2 chrUn.!!$F2 856
9 TraesCS7B01G472800 chrUn 170964481 170965016 535 True 269.500000 278 90.144500 2355 3211 2 chrUn.!!$R1 856
10 TraesCS7B01G472800 chr5A 178827020 178827553 533 True 217.666667 272 91.197333 2357 3211 3 chr5A.!!$R1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 555 0.324460 CCTACCGTCCCTTGGTCTCT 60.324 60.0 0.0 0.0 40.96 3.10 F
518 934 0.395173 AGAAACAAACACGGCACCCT 60.395 50.0 0.0 0.0 0.00 4.34 F
1647 2135 0.392193 ATCCAGAGTTCTTGGCAGCG 60.392 55.0 0.0 0.0 0.00 5.18 F
1649 2137 0.392193 CCAGAGTTCTTGGCAGCGAT 60.392 55.0 0.0 0.0 0.00 4.58 F
3522 4078 0.034059 CATCGACAGATACCTGGCCC 59.966 60.0 0.0 0.0 45.81 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 2058 0.179067 ACCCAAACGAGCAAGAACGA 60.179 50.0 0.00 0.00 0.00 3.85 R
2163 2688 0.038892 CAATGCACACCCAAGACAGC 60.039 55.0 0.00 0.00 0.00 4.40 R
2854 3389 0.095935 CTGAAGGAGCATTGAACGCG 59.904 55.0 3.53 3.53 0.00 6.01 R
3608 4164 0.594110 GGATCAGATCCTCGACGACC 59.406 60.0 21.00 0.00 46.19 4.79 R
5380 6136 0.033796 ATCTCAAGGGGGCATGTGTG 60.034 55.0 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.329296 TGCACCGAATACAAATTACACG 57.671 40.909 0.00 0.00 0.00 4.49
24 25 3.747010 TGCACCGAATACAAATTACACGT 59.253 39.130 0.00 0.00 0.00 4.49
25 26 4.928020 TGCACCGAATACAAATTACACGTA 59.072 37.500 0.00 0.00 0.00 3.57
26 27 5.163972 TGCACCGAATACAAATTACACGTAC 60.164 40.000 0.00 0.00 0.00 3.67
27 28 5.474545 CACCGAATACAAATTACACGTACG 58.525 41.667 15.01 15.01 0.00 3.67
28 29 5.285845 CACCGAATACAAATTACACGTACGA 59.714 40.000 24.41 0.00 0.00 3.43
29 30 5.861251 ACCGAATACAAATTACACGTACGAA 59.139 36.000 24.41 6.27 0.00 3.85
30 31 6.364706 ACCGAATACAAATTACACGTACGAAA 59.635 34.615 24.41 13.12 0.00 3.46
31 32 7.063308 ACCGAATACAAATTACACGTACGAAAT 59.937 33.333 24.41 14.79 0.00 2.17
32 33 7.576602 CCGAATACAAATTACACGTACGAAATC 59.423 37.037 24.41 5.07 0.00 2.17
33 34 7.576602 CGAATACAAATTACACGTACGAAATCC 59.423 37.037 24.41 3.15 0.00 3.01
34 35 5.535043 ACAAATTACACGTACGAAATCCC 57.465 39.130 24.41 0.00 0.00 3.85
35 36 4.996122 ACAAATTACACGTACGAAATCCCA 59.004 37.500 24.41 0.00 0.00 4.37
36 37 5.121142 ACAAATTACACGTACGAAATCCCAG 59.879 40.000 24.41 8.42 0.00 4.45
66 67 1.786937 AGGAAACAAACATGGCACCA 58.213 45.000 0.00 0.00 0.00 4.17
143 539 2.895404 AGAGAGTACAACAAACCGCCTA 59.105 45.455 0.00 0.00 0.00 3.93
159 555 0.324460 CCTACCGTCCCTTGGTCTCT 60.324 60.000 0.00 0.00 40.96 3.10
160 556 1.104630 CTACCGTCCCTTGGTCTCTC 58.895 60.000 0.00 0.00 40.96 3.20
169 565 1.842562 CCTTGGTCTCTCATCCCACAT 59.157 52.381 0.00 0.00 0.00 3.21
183 579 3.659092 ACATGCCACACAACGCCG 61.659 61.111 0.00 0.00 0.00 6.46
248 644 8.281212 ACTACACAAATGAAATCCCAGTAATC 57.719 34.615 0.00 0.00 0.00 1.75
252 651 6.098695 CACAAATGAAATCCCAGTAATCCCAT 59.901 38.462 0.00 0.00 0.00 4.00
303 714 3.958798 TCTATCTACTACAGTGCCAACCC 59.041 47.826 0.00 0.00 0.00 4.11
324 735 1.633432 TCCAACGGTCAAATCCCAGAT 59.367 47.619 0.00 0.00 0.00 2.90
337 748 2.745308 CCAGATCCATCACGGGGCA 61.745 63.158 0.00 0.00 34.36 5.36
357 768 1.466025 AACCAGACCGCCTAACGTCA 61.466 55.000 0.00 0.00 41.42 4.35
366 777 2.073816 CGCCTAACGTCATTTGGTCTT 58.926 47.619 0.00 0.00 35.76 3.01
374 785 2.607635 CGTCATTTGGTCTTATCCCACG 59.392 50.000 0.00 0.00 0.00 4.94
430 846 3.001758 CGCGTACCGAATACAAACTACAC 60.002 47.826 0.00 0.00 40.02 2.90
436 852 5.175859 ACCGAATACAAACTACACAGATGG 58.824 41.667 0.00 0.00 0.00 3.51
439 855 6.183360 CCGAATACAAACTACACAGATGGAAC 60.183 42.308 0.00 0.00 0.00 3.62
493 909 9.892130 AAAACCAGTATTTCCAACAATTAAACA 57.108 25.926 0.00 0.00 0.00 2.83
494 910 9.892130 AAACCAGTATTTCCAACAATTAAACAA 57.108 25.926 0.00 0.00 0.00 2.83
518 934 0.395173 AGAAACAAACACGGCACCCT 60.395 50.000 0.00 0.00 0.00 4.34
520 936 2.291457 AAACAAACACGGCACCCTGC 62.291 55.000 0.00 0.00 44.08 4.85
535 951 1.046472 CCTGCCCATCTACCACGGTA 61.046 60.000 0.00 0.00 0.00 4.02
552 968 0.535553 GTACGTGCCAACCCTCCAAA 60.536 55.000 0.00 0.00 0.00 3.28
555 971 1.152546 GTGCCAACCCTCCAAAGGT 60.153 57.895 0.00 0.00 41.59 3.50
606 1024 4.038080 CCGCCCAACGTCCTTTGC 62.038 66.667 0.00 0.00 41.42 3.68
607 1025 4.038080 CGCCCAACGTCCTTTGCC 62.038 66.667 0.00 0.00 36.87 4.52
609 1027 2.115266 CCCAACGTCCTTTGCCCT 59.885 61.111 0.00 0.00 0.00 5.19
612 1030 1.515521 CCAACGTCCTTTGCCCTCAC 61.516 60.000 0.00 0.00 0.00 3.51
708 1127 0.457035 CATGCGAAAATCCCAGTGGG 59.543 55.000 23.57 23.57 46.11 4.61
711 1130 0.608035 GCGAAAATCCCAGTGGGTCA 60.608 55.000 27.87 10.36 44.74 4.02
741 1160 3.369546 AGAAAGAAACAAACATGGGCG 57.630 42.857 0.00 0.00 0.00 6.13
757 1176 3.031736 TGGGCGCCTAATCTATCTATCC 58.968 50.000 28.56 4.31 0.00 2.59
762 1181 4.101741 GCGCCTAATCTATCTATCCCCATT 59.898 45.833 0.00 0.00 0.00 3.16
774 1193 9.620259 CTATCTATCCCCATTTATCTTAAAGCC 57.380 37.037 0.00 0.00 0.00 4.35
866 1285 3.124921 CGTTAAGGCCAGCCCACG 61.125 66.667 5.01 8.09 36.58 4.94
1088 1530 4.154347 GCCAGGGAGAGACAGGCG 62.154 72.222 0.00 0.00 35.42 5.52
1089 1531 3.465403 CCAGGGAGAGACAGGCGG 61.465 72.222 0.00 0.00 0.00 6.13
1090 1532 4.154347 CAGGGAGAGACAGGCGGC 62.154 72.222 0.00 0.00 0.00 6.53
1112 1554 3.342477 GCAGCTTCCCCTTCCCCT 61.342 66.667 0.00 0.00 0.00 4.79
1113 1555 3.002371 CAGCTTCCCCTTCCCCTC 58.998 66.667 0.00 0.00 0.00 4.30
1114 1556 2.286502 AGCTTCCCCTTCCCCTCC 60.287 66.667 0.00 0.00 0.00 4.30
1115 1557 2.286502 GCTTCCCCTTCCCCTCCT 60.287 66.667 0.00 0.00 0.00 3.69
1120 1562 2.652113 CCCCTTCCCCTCCTCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
1175 1627 1.725164 GTGACGGTCGTTTCTTGGATC 59.275 52.381 3.34 0.00 0.00 3.36
1198 1650 1.134694 GATGCGTTCTTGAACGGGC 59.865 57.895 28.97 17.87 45.51 6.13
1229 1681 4.495828 GTCGTTTCTTGTTCTTGTTCTTGC 59.504 41.667 0.00 0.00 0.00 4.01
1259 1711 2.102420 GGTTCTTTGGTGGGTTTCTTGG 59.898 50.000 0.00 0.00 0.00 3.61
1381 1842 2.126228 TCGCGGCGTAGGTTCTTG 60.126 61.111 22.90 0.00 0.00 3.02
1407 1869 1.302913 TTGCGGCGGATCTTTGGAA 60.303 52.632 9.78 0.00 0.00 3.53
1459 1921 1.936547 GTAGATCGGCAAGAAGCTTGG 59.063 52.381 2.10 0.00 44.79 3.61
1486 1948 3.044305 GCGTGGTCTGTGCTGGTC 61.044 66.667 0.00 0.00 0.00 4.02
1493 1955 1.004277 GTCTGTGCTGGTCGAGTTCG 61.004 60.000 0.00 0.00 41.45 3.95
1502 1964 2.878429 TCGAGTTCGAGCTGCTCC 59.122 61.111 22.97 9.94 44.22 4.70
1555 2017 1.831736 GTTTCTTCCTGGATCTCCCGA 59.168 52.381 0.00 0.00 37.93 5.14
1570 2058 3.073735 CGAGCCAGAGCAGAGGGT 61.074 66.667 0.00 0.00 43.56 4.34
1644 2132 2.517959 CCAAATCCAGAGTTCTTGGCA 58.482 47.619 0.00 0.00 30.84 4.92
1645 2133 2.490903 CCAAATCCAGAGTTCTTGGCAG 59.509 50.000 0.00 0.00 30.84 4.85
1646 2134 1.831580 AATCCAGAGTTCTTGGCAGC 58.168 50.000 0.00 0.00 0.00 5.25
1647 2135 0.392193 ATCCAGAGTTCTTGGCAGCG 60.392 55.000 0.00 0.00 0.00 5.18
1648 2136 1.004560 CCAGAGTTCTTGGCAGCGA 60.005 57.895 0.00 0.00 0.00 4.93
1649 2137 0.392193 CCAGAGTTCTTGGCAGCGAT 60.392 55.000 0.00 0.00 0.00 4.58
1669 2185 2.554370 TTCGAACCAAAAGATCCCGT 57.446 45.000 0.00 0.00 0.00 5.28
1674 2190 3.978855 CGAACCAAAAGATCCCGTTTTTC 59.021 43.478 0.00 0.00 0.00 2.29
1678 2199 4.038763 ACCAAAAGATCCCGTTTTTCTTCC 59.961 41.667 0.00 0.00 0.00 3.46
1718 2239 8.021898 TCCTCTGTTTCTGAATTTGGATTTTT 57.978 30.769 0.00 0.00 0.00 1.94
1733 2254 2.746279 TTTTTCCCTCTTGGTGCAGA 57.254 45.000 0.00 0.00 34.77 4.26
1777 2298 3.131223 GGAGAACATGAGATCCGAGAACA 59.869 47.826 0.00 0.00 0.00 3.18
1782 2303 1.254026 TGAGATCCGAGAACAACCGT 58.746 50.000 0.00 0.00 0.00 4.83
1938 2459 2.046292 TGAGCAATCCACCGATCCATA 58.954 47.619 0.00 0.00 0.00 2.74
1941 2462 1.813513 CAATCCACCGATCCATAGCC 58.186 55.000 0.00 0.00 0.00 3.93
1968 2489 3.249687 AACTCCAGTTCAATCCCGC 57.750 52.632 0.00 0.00 31.64 6.13
1969 2490 0.400213 AACTCCAGTTCAATCCCGCA 59.600 50.000 0.00 0.00 31.64 5.69
1970 2491 0.620556 ACTCCAGTTCAATCCCGCAT 59.379 50.000 0.00 0.00 0.00 4.73
1971 2492 1.019673 CTCCAGTTCAATCCCGCATG 58.980 55.000 0.00 0.00 0.00 4.06
1987 2508 2.094894 CGCATGTGATTCAGAACTGGAC 59.905 50.000 0.00 0.00 0.00 4.02
1996 2517 5.129485 TGATTCAGAACTGGACCTCTAATCC 59.871 44.000 1.93 0.00 36.70 3.01
1997 2518 4.338795 TCAGAACTGGACCTCTAATCCT 57.661 45.455 1.93 0.00 37.13 3.24
1998 2519 4.026744 TCAGAACTGGACCTCTAATCCTG 58.973 47.826 1.93 0.00 40.17 3.86
2000 2521 2.559381 ACTGGACCTCTAATCCTGCT 57.441 50.000 0.00 0.00 38.42 4.24
2136 2660 0.534203 CAAACGCCCCGCTGGTATAT 60.534 55.000 0.00 0.00 36.04 0.86
2163 2688 7.569957 GCAACTAAAATCCTTGCTGTTTTGATG 60.570 37.037 0.00 0.00 37.82 3.07
2207 2732 6.681729 TGTTCTTACCTCTGTACTTTCCAT 57.318 37.500 0.00 0.00 0.00 3.41
2210 2735 8.653191 TGTTCTTACCTCTGTACTTTCCATTTA 58.347 33.333 0.00 0.00 0.00 1.40
2212 2737 8.660295 TCTTACCTCTGTACTTTCCATTTAGA 57.340 34.615 0.00 0.00 0.00 2.10
2218 2743 7.201679 CCTCTGTACTTTCCATTTAGATGCAAG 60.202 40.741 0.00 3.25 32.40 4.01
2226 2751 8.415950 TTTCCATTTAGATGCAAGTTTTAGGA 57.584 30.769 0.00 0.00 31.67 2.94
2308 2835 9.212641 GCTATCAGTTAGATATTCAGATTTGCA 57.787 33.333 0.00 0.00 38.50 4.08
2312 2839 7.010460 TCAGTTAGATATTCAGATTTGCACACG 59.990 37.037 0.00 0.00 0.00 4.49
2413 2946 4.339872 TTTGAGCATGCCAAATCTTTGT 57.660 36.364 22.50 0.00 36.45 2.83
2414 2947 5.465532 TTTGAGCATGCCAAATCTTTGTA 57.534 34.783 22.50 6.10 36.45 2.41
2416 2949 5.664294 TGAGCATGCCAAATCTTTGTATT 57.336 34.783 15.66 0.00 36.45 1.89
2417 2950 5.412640 TGAGCATGCCAAATCTTTGTATTG 58.587 37.500 15.66 0.00 36.45 1.90
2419 2952 5.413499 AGCATGCCAAATCTTTGTATTGTC 58.587 37.500 15.66 0.00 36.45 3.18
2420 2953 5.186409 AGCATGCCAAATCTTTGTATTGTCT 59.814 36.000 15.66 0.00 36.45 3.41
2422 2955 5.389859 TGCCAAATCTTTGTATTGTCTGG 57.610 39.130 2.29 0.00 36.45 3.86
2423 2956 4.832266 TGCCAAATCTTTGTATTGTCTGGT 59.168 37.500 2.29 0.00 36.45 4.00
2424 2957 6.007076 TGCCAAATCTTTGTATTGTCTGGTA 58.993 36.000 2.29 0.00 36.45 3.25
2425 2958 6.663093 TGCCAAATCTTTGTATTGTCTGGTAT 59.337 34.615 2.29 0.00 36.45 2.73
2426 2959 7.831690 TGCCAAATCTTTGTATTGTCTGGTATA 59.168 33.333 2.29 0.00 36.45 1.47
2427 2960 8.129211 GCCAAATCTTTGTATTGTCTGGTATAC 58.871 37.037 0.00 0.00 36.45 1.47
2469 3002 9.717942 AATATAGTTCTAGCAGATTTAGGCAAG 57.282 33.333 0.00 0.00 0.00 4.01
2470 3003 5.428184 AGTTCTAGCAGATTTAGGCAAGT 57.572 39.130 0.00 0.00 0.00 3.16
2577 3110 6.474751 GCTGTAGATTTTCCATCTTTTGCATC 59.525 38.462 0.00 0.00 0.00 3.91
2578 3111 6.866480 TGTAGATTTTCCATCTTTTGCATCC 58.134 36.000 0.00 0.00 0.00 3.51
2579 3112 5.349061 AGATTTTCCATCTTTTGCATCCC 57.651 39.130 0.00 0.00 0.00 3.85
2580 3113 5.028131 AGATTTTCCATCTTTTGCATCCCT 58.972 37.500 0.00 0.00 0.00 4.20
2581 3114 4.540359 TTTTCCATCTTTTGCATCCCTG 57.460 40.909 0.00 0.00 0.00 4.45
2590 3123 2.753043 GCATCCCTGCCCTGTGTG 60.753 66.667 0.00 0.00 42.88 3.82
2591 3124 2.753043 CATCCCTGCCCTGTGTGC 60.753 66.667 0.00 0.00 0.00 4.57
2592 3125 2.937689 ATCCCTGCCCTGTGTGCT 60.938 61.111 0.00 0.00 0.00 4.40
2593 3126 1.616327 ATCCCTGCCCTGTGTGCTA 60.616 57.895 0.00 0.00 0.00 3.49
2594 3127 1.630126 ATCCCTGCCCTGTGTGCTAG 61.630 60.000 0.00 0.00 0.00 3.42
2595 3128 2.437359 CCTGCCCTGTGTGCTAGC 60.437 66.667 8.10 8.10 0.00 3.42
2596 3129 2.348620 CTGCCCTGTGTGCTAGCA 59.651 61.111 14.93 14.93 0.00 3.49
2597 3130 1.744368 CTGCCCTGTGTGCTAGCAG 60.744 63.158 20.03 6.15 44.31 4.24
2598 3131 2.216331 TGCCCTGTGTGCTAGCAGA 61.216 57.895 20.03 15.46 34.87 4.26
2599 3132 1.222936 GCCCTGTGTGCTAGCAGAT 59.777 57.895 20.03 0.00 34.87 2.90
2600 3133 0.393537 GCCCTGTGTGCTAGCAGATT 60.394 55.000 20.03 0.00 34.87 2.40
2601 3134 1.952367 GCCCTGTGTGCTAGCAGATTT 60.952 52.381 20.03 0.00 34.87 2.17
2602 3135 2.680805 GCCCTGTGTGCTAGCAGATTTA 60.681 50.000 20.03 6.95 34.87 1.40
2603 3136 3.813443 CCCTGTGTGCTAGCAGATTTAT 58.187 45.455 20.03 0.00 34.87 1.40
2604 3137 4.202441 CCCTGTGTGCTAGCAGATTTATT 58.798 43.478 20.03 0.00 34.87 1.40
2605 3138 4.036027 CCCTGTGTGCTAGCAGATTTATTG 59.964 45.833 20.03 3.95 34.87 1.90
2606 3139 4.497006 CCTGTGTGCTAGCAGATTTATTGC 60.497 45.833 20.03 3.40 41.83 3.56
2607 3140 4.009002 TGTGTGCTAGCAGATTTATTGCA 58.991 39.130 20.03 6.31 43.92 4.08
2611 3144 3.879295 TGCTAGCAGATTTATTGCACTCC 59.121 43.478 14.93 0.00 43.92 3.85
2632 3165 8.853345 CACTCCGATTTTGTTCAGATTATTTTG 58.147 33.333 0.00 0.00 0.00 2.44
2698 3233 5.775686 TGTCAGCTCAAGGATTTGAATTTG 58.224 37.500 0.00 0.00 42.48 2.32
2700 3235 6.183360 TGTCAGCTCAAGGATTTGAATTTGTT 60.183 34.615 0.00 0.00 42.48 2.83
2701 3236 6.364435 GTCAGCTCAAGGATTTGAATTTGTTC 59.636 38.462 0.00 0.00 42.48 3.18
2702 3237 6.040729 TCAGCTCAAGGATTTGAATTTGTTCA 59.959 34.615 0.00 0.00 42.48 3.18
2703 3238 6.365247 CAGCTCAAGGATTTGAATTTGTTCAG 59.635 38.462 0.00 0.00 42.48 3.02
2704 3239 6.266103 AGCTCAAGGATTTGAATTTGTTCAGA 59.734 34.615 0.00 0.00 42.48 3.27
2705 3240 7.039223 AGCTCAAGGATTTGAATTTGTTCAGAT 60.039 33.333 0.00 0.00 42.48 2.90
2706 3241 7.601508 GCTCAAGGATTTGAATTTGTTCAGATT 59.398 33.333 0.00 0.00 42.48 2.40
2707 3242 9.485206 CTCAAGGATTTGAATTTGTTCAGATTT 57.515 29.630 0.00 0.00 42.48 2.17
2712 3247 9.977762 GGATTTGAATTTGTTCAGATTTATTGC 57.022 29.630 0.00 0.00 31.87 3.56
2715 3250 9.545105 TTTGAATTTGTTCAGATTTATTGCACT 57.455 25.926 0.00 0.00 31.87 4.40
2716 3251 8.746922 TGAATTTGTTCAGATTTATTGCACTC 57.253 30.769 0.00 0.00 0.00 3.51
2717 3252 7.814107 TGAATTTGTTCAGATTTATTGCACTCC 59.186 33.333 0.00 0.00 0.00 3.85
2718 3253 4.944962 TGTTCAGATTTATTGCACTCCG 57.055 40.909 0.00 0.00 0.00 4.63
2719 3254 4.574892 TGTTCAGATTTATTGCACTCCGA 58.425 39.130 0.00 0.00 0.00 4.55
2720 3255 5.185454 TGTTCAGATTTATTGCACTCCGAT 58.815 37.500 0.00 0.00 0.00 4.18
2721 3256 5.647658 TGTTCAGATTTATTGCACTCCGATT 59.352 36.000 0.00 0.00 0.00 3.34
2722 3257 6.150976 TGTTCAGATTTATTGCACTCCGATTT 59.849 34.615 0.00 0.00 0.00 2.17
2723 3258 6.757897 TCAGATTTATTGCACTCCGATTTT 57.242 33.333 0.00 0.00 0.00 1.82
2724 3259 6.554419 TCAGATTTATTGCACTCCGATTTTG 58.446 36.000 0.00 0.00 0.00 2.44
2725 3260 6.150976 TCAGATTTATTGCACTCCGATTTTGT 59.849 34.615 0.00 0.00 0.00 2.83
2726 3261 6.808212 CAGATTTATTGCACTCCGATTTTGTT 59.192 34.615 0.00 0.00 0.00 2.83
2727 3262 7.008628 CAGATTTATTGCACTCCGATTTTGTTC 59.991 37.037 0.00 0.00 0.00 3.18
2728 3263 5.697473 TTATTGCACTCCGATTTTGTTCA 57.303 34.783 0.00 0.00 0.00 3.18
2729 3264 3.624326 TTGCACTCCGATTTTGTTCAG 57.376 42.857 0.00 0.00 0.00 3.02
2730 3265 2.844946 TGCACTCCGATTTTGTTCAGA 58.155 42.857 0.00 0.00 0.00 3.27
2731 3266 3.411446 TGCACTCCGATTTTGTTCAGAT 58.589 40.909 0.00 0.00 0.00 2.90
2732 3267 3.820467 TGCACTCCGATTTTGTTCAGATT 59.180 39.130 0.00 0.00 0.00 2.40
2733 3268 5.000591 TGCACTCCGATTTTGTTCAGATTA 58.999 37.500 0.00 0.00 0.00 1.75
2734 3269 5.647658 TGCACTCCGATTTTGTTCAGATTAT 59.352 36.000 0.00 0.00 0.00 1.28
2735 3270 6.150976 TGCACTCCGATTTTGTTCAGATTATT 59.849 34.615 0.00 0.00 0.00 1.40
2736 3271 7.029563 GCACTCCGATTTTGTTCAGATTATTT 58.970 34.615 0.00 0.00 0.00 1.40
2737 3272 7.542130 GCACTCCGATTTTGTTCAGATTATTTT 59.458 33.333 0.00 0.00 0.00 1.82
2738 3273 8.853345 CACTCCGATTTTGTTCAGATTATTTTG 58.147 33.333 0.00 0.00 0.00 2.44
2739 3274 7.542130 ACTCCGATTTTGTTCAGATTATTTTGC 59.458 33.333 0.00 0.00 0.00 3.68
2740 3275 6.811170 TCCGATTTTGTTCAGATTATTTTGCC 59.189 34.615 0.00 0.00 0.00 4.52
2741 3276 6.813152 CCGATTTTGTTCAGATTATTTTGCCT 59.187 34.615 0.00 0.00 0.00 4.75
2742 3277 7.331687 CCGATTTTGTTCAGATTATTTTGCCTT 59.668 33.333 0.00 0.00 0.00 4.35
2743 3278 8.164153 CGATTTTGTTCAGATTATTTTGCCTTG 58.836 33.333 0.00 0.00 0.00 3.61
2744 3279 6.783892 TTTGTTCAGATTATTTTGCCTTGC 57.216 33.333 0.00 0.00 0.00 4.01
2745 3280 4.819769 TGTTCAGATTATTTTGCCTTGCC 58.180 39.130 0.00 0.00 0.00 4.52
2746 3281 4.527816 TGTTCAGATTATTTTGCCTTGCCT 59.472 37.500 0.00 0.00 0.00 4.75
2747 3282 5.011943 TGTTCAGATTATTTTGCCTTGCCTT 59.988 36.000 0.00 0.00 0.00 4.35
2748 3283 5.075858 TCAGATTATTTTGCCTTGCCTTG 57.924 39.130 0.00 0.00 0.00 3.61
2749 3284 4.527816 TCAGATTATTTTGCCTTGCCTTGT 59.472 37.500 0.00 0.00 0.00 3.16
2750 3285 5.011943 TCAGATTATTTTGCCTTGCCTTGTT 59.988 36.000 0.00 0.00 0.00 2.83
2751 3286 5.702209 CAGATTATTTTGCCTTGCCTTGTTT 59.298 36.000 0.00 0.00 0.00 2.83
2752 3287 5.702209 AGATTATTTTGCCTTGCCTTGTTTG 59.298 36.000 0.00 0.00 0.00 2.93
2753 3288 3.557228 ATTTTGCCTTGCCTTGTTTGA 57.443 38.095 0.00 0.00 0.00 2.69
2754 3289 3.340814 TTTTGCCTTGCCTTGTTTGAA 57.659 38.095 0.00 0.00 0.00 2.69
2755 3290 2.307934 TTGCCTTGCCTTGTTTGAAC 57.692 45.000 0.00 0.00 0.00 3.18
2756 3291 0.463620 TGCCTTGCCTTGTTTGAACC 59.536 50.000 0.00 0.00 0.00 3.62
2757 3292 0.463620 GCCTTGCCTTGTTTGAACCA 59.536 50.000 0.00 0.00 0.00 3.67
2758 3293 1.134551 GCCTTGCCTTGTTTGAACCAA 60.135 47.619 0.00 0.00 0.00 3.67
2759 3294 2.825205 CCTTGCCTTGTTTGAACCAAG 58.175 47.619 0.00 0.00 0.00 3.61
2760 3295 2.430332 CCTTGCCTTGTTTGAACCAAGA 59.570 45.455 3.90 0.00 33.40 3.02
2761 3296 3.118811 CCTTGCCTTGTTTGAACCAAGAA 60.119 43.478 3.90 0.00 33.40 2.52
2762 3297 4.443315 CCTTGCCTTGTTTGAACCAAGAAT 60.443 41.667 3.90 0.00 33.40 2.40
2763 3298 4.320608 TGCCTTGTTTGAACCAAGAATC 57.679 40.909 3.90 0.00 0.00 2.52
2764 3299 3.960102 TGCCTTGTTTGAACCAAGAATCT 59.040 39.130 3.90 0.00 0.00 2.40
2765 3300 4.202141 TGCCTTGTTTGAACCAAGAATCTG 60.202 41.667 3.90 0.00 0.00 2.90
2766 3301 4.037923 GCCTTGTTTGAACCAAGAATCTGA 59.962 41.667 3.90 0.00 0.00 3.27
2767 3302 5.766222 CCTTGTTTGAACCAAGAATCTGAG 58.234 41.667 3.90 0.00 0.00 3.35
2768 3303 4.836125 TGTTTGAACCAAGAATCTGAGC 57.164 40.909 0.00 0.00 0.00 4.26
2769 3304 4.206375 TGTTTGAACCAAGAATCTGAGCA 58.794 39.130 0.00 0.00 0.00 4.26
2770 3305 4.644234 TGTTTGAACCAAGAATCTGAGCAA 59.356 37.500 0.00 0.00 0.00 3.91
2771 3306 5.126869 TGTTTGAACCAAGAATCTGAGCAAA 59.873 36.000 0.00 0.00 0.00 3.68
2772 3307 5.850557 TTGAACCAAGAATCTGAGCAAAA 57.149 34.783 0.00 0.00 0.00 2.44
2773 3308 6.409524 TTGAACCAAGAATCTGAGCAAAAT 57.590 33.333 0.00 0.00 0.00 1.82
2774 3309 7.523293 TTGAACCAAGAATCTGAGCAAAATA 57.477 32.000 0.00 0.00 0.00 1.40
2775 3310 7.149569 TGAACCAAGAATCTGAGCAAAATAG 57.850 36.000 0.00 0.00 0.00 1.73
2776 3311 6.151648 TGAACCAAGAATCTGAGCAAAATAGG 59.848 38.462 0.00 0.00 0.00 2.57
2777 3312 5.574188 ACCAAGAATCTGAGCAAAATAGGT 58.426 37.500 0.00 0.00 0.00 3.08
2778 3313 6.721318 ACCAAGAATCTGAGCAAAATAGGTA 58.279 36.000 0.00 0.00 0.00 3.08
2779 3314 7.175104 ACCAAGAATCTGAGCAAAATAGGTAA 58.825 34.615 0.00 0.00 0.00 2.85
2780 3315 7.121315 ACCAAGAATCTGAGCAAAATAGGTAAC 59.879 37.037 0.00 0.00 0.00 2.50
2795 3330 3.618690 GGTAACTGTCAGCTCAAGGAT 57.381 47.619 0.00 0.00 0.00 3.24
2796 3331 3.944087 GGTAACTGTCAGCTCAAGGATT 58.056 45.455 0.00 0.00 0.00 3.01
2797 3332 4.327680 GGTAACTGTCAGCTCAAGGATTT 58.672 43.478 0.00 0.00 0.00 2.17
2798 3333 4.154918 GGTAACTGTCAGCTCAAGGATTTG 59.845 45.833 0.00 0.00 35.57 2.32
2799 3334 3.777106 ACTGTCAGCTCAAGGATTTGA 57.223 42.857 0.00 0.00 40.92 2.69
2800 3335 4.090761 ACTGTCAGCTCAAGGATTTGAA 57.909 40.909 0.00 0.00 42.48 2.69
2801 3336 4.660168 ACTGTCAGCTCAAGGATTTGAAT 58.340 39.130 0.00 0.00 42.48 2.57
2802 3337 5.075493 ACTGTCAGCTCAAGGATTTGAATT 58.925 37.500 0.00 0.00 42.48 2.17
2803 3338 5.537674 ACTGTCAGCTCAAGGATTTGAATTT 59.462 36.000 0.00 0.00 42.48 1.82
2804 3339 5.775686 TGTCAGCTCAAGGATTTGAATTTG 58.224 37.500 0.00 0.00 42.48 2.32
2854 3389 2.354259 CAGAAGAGGAATGCTGACACC 58.646 52.381 0.00 0.00 0.00 4.16
2857 3392 2.434884 AGGAATGCTGACACCGCG 60.435 61.111 0.00 0.00 0.00 6.46
2932 3467 5.658634 TGATGAGATGGTAAGCAGAGTAACT 59.341 40.000 0.00 0.00 0.00 2.24
2972 3522 5.273674 TCAGCATTTTGGTGTTTTCATCA 57.726 34.783 6.59 0.00 45.34 3.07
2990 3540 4.820173 TCATCACTCATCATCCATGCTTTC 59.180 41.667 0.00 0.00 31.70 2.62
3017 3567 3.378512 ACTCCAGATGACCAATGAGCTA 58.621 45.455 0.00 0.00 0.00 3.32
3045 3595 1.546029 TCGACATGGAGGACACTGAAG 59.454 52.381 0.00 0.00 0.00 3.02
3046 3596 1.546029 CGACATGGAGGACACTGAAGA 59.454 52.381 0.00 0.00 0.00 2.87
3047 3597 2.416566 CGACATGGAGGACACTGAAGAG 60.417 54.545 0.00 0.00 0.00 2.85
3110 3660 0.725117 CCCTTGCGGTTGTCGAATAC 59.275 55.000 0.00 0.00 42.43 1.89
3113 3663 1.058695 CTTGCGGTTGTCGAATACGTC 59.941 52.381 0.00 0.00 42.43 4.34
3235 3788 7.277981 GGTATGGTAGTAATAATCTGATTGCCG 59.722 40.741 13.01 0.00 0.00 5.69
3273 3826 1.056700 AGTTGAGCTGTGTGTCCCCT 61.057 55.000 0.00 0.00 0.00 4.79
3303 3856 2.095059 GGCACACCAATCTGACATCAAC 60.095 50.000 0.00 0.00 35.26 3.18
3330 3883 2.313172 GCGCGGCATTCTGATCGAT 61.313 57.895 8.83 0.00 0.00 3.59
3336 3889 1.534595 GGCATTCTGATCGATTGGCTC 59.465 52.381 19.00 0.00 42.17 4.70
3339 3892 3.120269 GCATTCTGATCGATTGGCTCATC 60.120 47.826 0.00 0.00 0.00 2.92
3365 3918 2.557920 AGGATTCCATTCGATGCTCC 57.442 50.000 5.29 0.00 0.00 4.70
3368 3921 2.288825 GGATTCCATTCGATGCTCCGTA 60.289 50.000 0.00 0.00 0.00 4.02
3369 3922 2.971660 TTCCATTCGATGCTCCGTAA 57.028 45.000 0.00 0.00 0.00 3.18
3372 3925 3.390135 TCCATTCGATGCTCCGTAAATC 58.610 45.455 0.00 0.00 0.00 2.17
3383 3936 0.935196 CCGTAAATCCGGCAAGTAGC 59.065 55.000 0.00 0.00 41.78 3.58
3401 3957 4.898265 AGTAGCCTTCTTGATATGCTCTGA 59.102 41.667 0.00 0.00 33.63 3.27
3402 3958 4.767578 AGCCTTCTTGATATGCTCTGAA 57.232 40.909 0.00 0.00 0.00 3.02
3403 3959 5.108187 AGCCTTCTTGATATGCTCTGAAA 57.892 39.130 0.00 0.00 0.00 2.69
3404 3960 5.503927 AGCCTTCTTGATATGCTCTGAAAA 58.496 37.500 0.00 0.00 0.00 2.29
3428 3984 5.801531 ATGGAAAGTTCTTACAAAACCCC 57.198 39.130 0.00 0.00 0.00 4.95
3522 4078 0.034059 CATCGACAGATACCTGGCCC 59.966 60.000 0.00 0.00 45.81 5.80
3533 4089 4.016706 CTGGCCCGGGAGAACGTT 62.017 66.667 29.31 0.00 0.00 3.99
3602 4158 1.208052 TGCAAGTATGAGGAGGTCAGC 59.792 52.381 0.00 0.00 39.07 4.26
3608 4164 4.803426 GAGGAGGTCAGCGTGCCG 62.803 72.222 0.00 0.00 0.00 5.69
3638 4194 2.352617 GGATCTGATCCTCATCTGCGAC 60.353 54.545 25.93 0.00 46.19 5.19
3746 4313 5.047021 TGTCTTCAGAGAATTGACACTAGGG 60.047 44.000 0.00 0.00 33.45 3.53
3755 4322 6.885922 AGAATTGACACTAGGGTATGGTAAC 58.114 40.000 0.00 0.00 0.00 2.50
3777 4344 0.247460 TGCAGGAGAGGACGATTGTG 59.753 55.000 0.00 0.00 0.00 3.33
3789 4356 1.081892 CGATTGTGGACAGGCTTGAG 58.918 55.000 1.40 0.00 0.00 3.02
3801 4368 2.096069 CAGGCTTGAGTTCAACATGTCG 60.096 50.000 0.00 0.00 0.00 4.35
3804 4371 2.290641 GCTTGAGTTCAACATGTCGGTT 59.709 45.455 0.00 0.00 0.00 4.44
3828 4395 3.834489 ACTCCATACTGCTTCATGAGG 57.166 47.619 0.00 0.00 0.00 3.86
3868 4435 4.040461 CAGGGTCTGACAAGAAGGTAAGAA 59.960 45.833 10.38 0.00 30.02 2.52
3869 4436 4.658901 AGGGTCTGACAAGAAGGTAAGAAA 59.341 41.667 10.38 0.00 30.02 2.52
3870 4437 4.998033 GGGTCTGACAAGAAGGTAAGAAAG 59.002 45.833 10.38 0.00 30.02 2.62
3871 4438 5.221661 GGGTCTGACAAGAAGGTAAGAAAGA 60.222 44.000 10.38 0.00 30.02 2.52
3872 4439 6.468543 GGTCTGACAAGAAGGTAAGAAAGAT 58.531 40.000 10.38 0.00 30.02 2.40
3873 4440 6.592220 GGTCTGACAAGAAGGTAAGAAAGATC 59.408 42.308 10.38 0.00 30.02 2.75
3874 4441 7.155328 GTCTGACAAGAAGGTAAGAAAGATCA 58.845 38.462 2.24 0.00 30.02 2.92
3875 4442 7.117092 GTCTGACAAGAAGGTAAGAAAGATCAC 59.883 40.741 2.24 0.00 30.02 3.06
3876 4443 5.926542 TGACAAGAAGGTAAGAAAGATCACG 59.073 40.000 0.00 0.00 0.00 4.35
3878 4445 3.863041 AGAAGGTAAGAAAGATCACGGC 58.137 45.455 0.00 0.00 0.00 5.68
3879 4446 3.515901 AGAAGGTAAGAAAGATCACGGCT 59.484 43.478 0.00 0.00 0.00 5.52
3880 4447 3.528597 AGGTAAGAAAGATCACGGCTC 57.471 47.619 0.00 0.00 0.00 4.70
3906 4473 3.508793 ACCTTGGATCATTGCTCTGTTTG 59.491 43.478 0.00 0.00 0.00 2.93
3907 4474 3.508793 CCTTGGATCATTGCTCTGTTTGT 59.491 43.478 0.00 0.00 0.00 2.83
3908 4475 4.701651 CCTTGGATCATTGCTCTGTTTGTA 59.298 41.667 0.00 0.00 0.00 2.41
3909 4476 5.359009 CCTTGGATCATTGCTCTGTTTGTAT 59.641 40.000 0.00 0.00 0.00 2.29
3910 4477 5.823209 TGGATCATTGCTCTGTTTGTATG 57.177 39.130 0.00 0.00 0.00 2.39
3913 4480 6.316140 TGGATCATTGCTCTGTTTGTATGTAC 59.684 38.462 0.00 0.00 0.00 2.90
3914 4481 6.540189 GGATCATTGCTCTGTTTGTATGTACT 59.460 38.462 0.00 0.00 0.00 2.73
3916 4483 9.265901 GATCATTGCTCTGTTTGTATGTACTAT 57.734 33.333 0.00 0.00 0.00 2.12
3917 4484 8.424274 TCATTGCTCTGTTTGTATGTACTATG 57.576 34.615 0.00 0.00 0.00 2.23
3918 4485 8.040727 TCATTGCTCTGTTTGTATGTACTATGT 58.959 33.333 0.00 0.00 0.00 2.29
3919 4486 9.313118 CATTGCTCTGTTTGTATGTACTATGTA 57.687 33.333 0.00 0.00 0.00 2.29
3921 4488 8.871686 TGCTCTGTTTGTATGTACTATGTATG 57.128 34.615 0.00 0.00 0.00 2.39
3922 4489 8.691797 TGCTCTGTTTGTATGTACTATGTATGA 58.308 33.333 0.00 0.00 0.00 2.15
3923 4490 9.186323 GCTCTGTTTGTATGTACTATGTATGAG 57.814 37.037 0.00 0.00 0.00 2.90
3926 4493 9.803315 CTGTTTGTATGTACTATGTATGAGTGT 57.197 33.333 0.00 0.00 0.00 3.55
3993 4560 0.903942 AGCTGCTCTCCTTCTTCCTG 59.096 55.000 0.00 0.00 0.00 3.86
4103 4670 4.742201 CGGGTGCGTGTCCTGGAG 62.742 72.222 0.00 0.00 0.00 3.86
4158 4725 6.182627 TGAAGAACAGCTCATGTATGGAAAT 58.817 36.000 0.00 0.00 43.00 2.17
4159 4726 6.317140 TGAAGAACAGCTCATGTATGGAAATC 59.683 38.462 0.00 0.00 43.00 2.17
4163 4730 4.324486 ACAGCTCATGTATGGAAATCCACA 60.324 41.667 3.84 0.00 41.38 4.17
4164 4731 6.378072 ACAGCTCATGTATGGAAATCCACAC 61.378 44.000 3.84 3.86 43.52 3.82
4165 4732 8.495434 ACAGCTCATGTATGGAAATCCACACT 62.495 42.308 11.82 0.00 43.61 3.55
4166 4733 9.862306 ACAGCTCATGTATGGAAATCCACACTT 62.862 40.741 11.82 3.20 43.61 3.16
4225 4799 4.202357 TGAGTGATGCCTTTGTTACTCACT 60.202 41.667 2.88 2.88 44.30 3.41
4226 4800 4.067896 AGTGATGCCTTTGTTACTCACTG 58.932 43.478 2.46 0.00 41.16 3.66
4227 4801 3.189287 GTGATGCCTTTGTTACTCACTGG 59.811 47.826 0.00 0.00 32.33 4.00
4228 4802 3.181445 TGATGCCTTTGTTACTCACTGGT 60.181 43.478 0.00 0.00 0.00 4.00
4229 4803 3.290948 TGCCTTTGTTACTCACTGGTT 57.709 42.857 0.00 0.00 0.00 3.67
4287 4862 2.821366 GATGGTGGAGCTGCACCG 60.821 66.667 40.94 0.00 44.07 4.94
4442 5017 4.660105 GACTTACTACATCACCGTGTCTC 58.340 47.826 0.00 0.00 33.62 3.36
4443 5018 3.126514 ACTTACTACATCACCGTGTCTCG 59.873 47.826 0.00 0.00 39.52 4.04
4455 5030 1.790623 CGTGTCTCGGGTAACAACAAG 59.209 52.381 0.00 0.00 39.74 3.16
4467 5042 5.975344 GGGTAACAACAAGTGCTAAAAAGAC 59.025 40.000 0.00 0.00 39.74 3.01
4468 5043 5.975344 GGTAACAACAAGTGCTAAAAAGACC 59.025 40.000 0.00 0.00 0.00 3.85
4475 5050 1.296056 TGCTAAAAAGACCGCGAGCC 61.296 55.000 8.23 0.00 0.00 4.70
4485 5060 1.079819 CCGCGAGCCAAAGAAGAGA 60.080 57.895 8.23 0.00 0.00 3.10
4490 5065 2.808543 GCGAGCCAAAGAAGAGAAAGAA 59.191 45.455 0.00 0.00 0.00 2.52
4491 5066 3.120373 GCGAGCCAAAGAAGAGAAAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
4492 5067 4.310769 CGAGCCAAAGAAGAGAAAGAAGA 58.689 43.478 0.00 0.00 0.00 2.87
4544 5119 5.982356 TCTGATGAGATTTACACCAAGGAG 58.018 41.667 0.00 0.00 0.00 3.69
4547 5122 5.250543 TGATGAGATTTACACCAAGGAGGAA 59.749 40.000 0.00 0.00 41.22 3.36
4548 5123 5.165961 TGAGATTTACACCAAGGAGGAAG 57.834 43.478 0.00 0.00 41.22 3.46
4551 5126 6.183361 TGAGATTTACACCAAGGAGGAAGAAA 60.183 38.462 0.00 0.00 41.22 2.52
4633 5223 0.388649 CCGGTCCGAGTTGAGTTGAG 60.389 60.000 14.39 0.00 0.00 3.02
4634 5224 0.314302 CGGTCCGAGTTGAGTTGAGT 59.686 55.000 4.91 0.00 0.00 3.41
4635 5225 1.269621 CGGTCCGAGTTGAGTTGAGTT 60.270 52.381 4.91 0.00 0.00 3.01
4636 5226 2.802057 CGGTCCGAGTTGAGTTGAGTTT 60.802 50.000 4.91 0.00 0.00 2.66
4637 5227 2.544267 GGTCCGAGTTGAGTTGAGTTTG 59.456 50.000 0.00 0.00 0.00 2.93
4638 5228 3.454375 GTCCGAGTTGAGTTGAGTTTGA 58.546 45.455 0.00 0.00 0.00 2.69
4639 5229 3.491267 GTCCGAGTTGAGTTGAGTTTGAG 59.509 47.826 0.00 0.00 0.00 3.02
4640 5230 3.132289 TCCGAGTTGAGTTGAGTTTGAGT 59.868 43.478 0.00 0.00 0.00 3.41
4641 5231 3.871594 CCGAGTTGAGTTGAGTTTGAGTT 59.128 43.478 0.00 0.00 0.00 3.01
4642 5232 4.332819 CCGAGTTGAGTTGAGTTTGAGTTT 59.667 41.667 0.00 0.00 0.00 2.66
4645 5235 5.942872 AGTTGAGTTGAGTTTGAGTTTGTG 58.057 37.500 0.00 0.00 0.00 3.33
4845 5442 2.988010 TGATCATGTCCTGGTAGCAC 57.012 50.000 0.00 0.00 0.00 4.40
4851 5448 4.030216 TCATGTCCTGGTAGCACAATCTA 58.970 43.478 0.00 0.00 0.00 1.98
4859 5456 6.992123 TCCTGGTAGCACAATCTATAATGTTG 59.008 38.462 0.00 0.00 0.00 3.33
4863 5460 7.826744 TGGTAGCACAATCTATAATGTTGTTGA 59.173 33.333 0.00 0.00 34.09 3.18
4899 5496 7.274603 TGAAATTTGACTTGATGTGATGTGA 57.725 32.000 0.00 0.00 0.00 3.58
4917 5514 8.140628 GTGATGTGAGTGTCATATTCTGTAGAT 58.859 37.037 0.00 0.00 27.98 1.98
5056 5784 6.518208 ACTTGTACTAGTAAGCTTCTCTGG 57.482 41.667 8.27 7.78 0.00 3.86
5107 5835 3.582208 TGGTCCCAGAATTCAAATTTGGG 59.418 43.478 19.21 19.21 42.14 4.12
5113 5841 4.453136 CCAGAATTCAAATTTGGGCTGTTG 59.547 41.667 17.90 9.60 0.00 3.33
5143 5871 3.244840 TGAATTCAAATTTGGCTTGGGGG 60.245 43.478 17.90 0.00 0.00 5.40
5181 5909 6.861065 TTTGAACTTTGACTAGCAGTAAGG 57.139 37.500 0.00 0.00 0.00 2.69
5182 5910 5.546621 TGAACTTTGACTAGCAGTAAGGT 57.453 39.130 0.00 0.00 0.00 3.50
5196 5925 1.066358 GTAAGGTGGTGGCACTAGGAC 60.066 57.143 18.45 9.04 0.00 3.85
5211 5940 5.262804 CACTAGGACCTAGAACCAAGTAGT 58.737 45.833 31.36 7.90 37.49 2.73
5356 6112 3.766051 AGATCTGGAATGCCAAGGAAAAC 59.234 43.478 0.00 0.00 45.41 2.43
5359 6115 4.335416 TCTGGAATGCCAAGGAAAACTAG 58.665 43.478 0.00 0.00 45.41 2.57
5364 6120 1.177401 GCCAAGGAAAACTAGCAGGG 58.823 55.000 0.00 0.00 0.00 4.45
5380 6136 1.671379 GGGTTCGCTTCACTCCACC 60.671 63.158 0.00 0.00 0.00 4.61
5404 6160 0.259938 ATGCCCCCTTGAGATGGTTC 59.740 55.000 0.00 0.00 0.00 3.62
5414 6170 2.034048 GAGATGGTTCTCGCCCCCTC 62.034 65.000 0.00 0.00 39.14 4.30
5415 6171 3.090532 ATGGTTCTCGCCCCCTCC 61.091 66.667 0.00 0.00 0.00 4.30
5524 6280 1.228063 AGACAGGTTGGCAGTGCTG 60.228 57.895 16.11 7.44 0.00 4.41
5557 6313 4.463186 AGCTAGTAGTACAAAGTGGTCCTG 59.537 45.833 2.52 0.00 0.00 3.86
5569 6325 2.174639 AGTGGTCCTGGATTTGTGAACA 59.825 45.455 0.00 0.00 0.00 3.18
5623 6381 2.111041 GTCACTTTGACTTGCAGTGC 57.889 50.000 8.58 8.58 43.73 4.40
5625 6383 0.740149 CACTTTGACTTGCAGTGCCA 59.260 50.000 13.72 0.00 31.99 4.92
5626 6384 1.027357 ACTTTGACTTGCAGTGCCAG 58.973 50.000 13.72 14.08 0.00 4.85
5637 6395 2.048127 GTGCCAGTGACCTCGGAC 60.048 66.667 0.00 0.00 0.00 4.79
5642 6400 0.818296 CCAGTGACCTCGGACTAAGG 59.182 60.000 0.00 0.00 39.96 2.69
5721 6524 1.753073 GATTCCCTTCCCTTGCATGTG 59.247 52.381 0.00 0.00 0.00 3.21
5747 6550 7.226523 GTGCCTTTACAAAATTTGAATGGAAGT 59.773 33.333 13.19 0.00 0.00 3.01
5769 6572 1.131126 GTGTGATCCGAAGCCAACATG 59.869 52.381 0.00 0.00 0.00 3.21
5801 6604 3.952323 GTGCAGATGTGGGTAGTAGAGTA 59.048 47.826 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.728131 CGTGTAATTTGTATTCGGTGCATG 59.272 41.667 0.00 0.00 0.00 4.06
1 2 4.393680 ACGTGTAATTTGTATTCGGTGCAT 59.606 37.500 0.00 0.00 0.00 3.96
2 3 3.747010 ACGTGTAATTTGTATTCGGTGCA 59.253 39.130 0.00 0.00 0.00 4.57
3 4 4.330740 ACGTGTAATTTGTATTCGGTGC 57.669 40.909 0.00 0.00 0.00 5.01
4 5 5.285845 TCGTACGTGTAATTTGTATTCGGTG 59.714 40.000 16.05 0.00 0.00 4.94
5 6 5.398169 TCGTACGTGTAATTTGTATTCGGT 58.602 37.500 16.05 0.00 0.00 4.69
6 7 5.930310 TCGTACGTGTAATTTGTATTCGG 57.070 39.130 16.05 0.00 0.00 4.30
7 8 7.576602 GGATTTCGTACGTGTAATTTGTATTCG 59.423 37.037 16.05 0.00 0.00 3.34
8 9 7.847564 GGGATTTCGTACGTGTAATTTGTATTC 59.152 37.037 16.05 1.89 0.00 1.75
9 10 7.333921 TGGGATTTCGTACGTGTAATTTGTATT 59.666 33.333 16.05 0.00 0.00 1.89
10 11 6.817641 TGGGATTTCGTACGTGTAATTTGTAT 59.182 34.615 16.05 0.00 0.00 2.29
11 12 6.162079 TGGGATTTCGTACGTGTAATTTGTA 58.838 36.000 16.05 0.00 0.00 2.41
12 13 4.996122 TGGGATTTCGTACGTGTAATTTGT 59.004 37.500 16.05 0.00 0.00 2.83
13 14 5.121142 ACTGGGATTTCGTACGTGTAATTTG 59.879 40.000 16.05 4.54 0.00 2.32
14 15 5.240121 ACTGGGATTTCGTACGTGTAATTT 58.760 37.500 16.05 0.00 0.00 1.82
15 16 4.824289 ACTGGGATTTCGTACGTGTAATT 58.176 39.130 16.05 0.00 0.00 1.40
16 17 4.460948 ACTGGGATTTCGTACGTGTAAT 57.539 40.909 16.05 12.96 0.00 1.89
17 18 3.940209 ACTGGGATTTCGTACGTGTAA 57.060 42.857 16.05 8.73 0.00 2.41
18 19 5.384063 TTTACTGGGATTTCGTACGTGTA 57.616 39.130 16.05 2.15 0.00 2.90
19 20 3.940209 TTACTGGGATTTCGTACGTGT 57.060 42.857 16.05 2.22 0.00 4.49
20 21 4.925054 TCTTTTACTGGGATTTCGTACGTG 59.075 41.667 16.05 0.00 0.00 4.49
21 22 5.138125 TCTTTTACTGGGATTTCGTACGT 57.862 39.130 16.05 0.00 0.00 3.57
22 23 6.657836 ATTCTTTTACTGGGATTTCGTACG 57.342 37.500 9.53 9.53 0.00 3.67
23 24 8.610035 CCTTATTCTTTTACTGGGATTTCGTAC 58.390 37.037 0.00 0.00 0.00 3.67
24 25 8.542080 TCCTTATTCTTTTACTGGGATTTCGTA 58.458 33.333 0.00 0.00 0.00 3.43
25 26 7.399634 TCCTTATTCTTTTACTGGGATTTCGT 58.600 34.615 0.00 0.00 0.00 3.85
26 27 7.859325 TCCTTATTCTTTTACTGGGATTTCG 57.141 36.000 0.00 0.00 0.00 3.46
27 28 9.856488 GTTTCCTTATTCTTTTACTGGGATTTC 57.144 33.333 0.00 0.00 0.00 2.17
28 29 9.374711 TGTTTCCTTATTCTTTTACTGGGATTT 57.625 29.630 0.00 0.00 0.00 2.17
29 30 8.950007 TGTTTCCTTATTCTTTTACTGGGATT 57.050 30.769 0.00 0.00 0.00 3.01
30 31 8.950007 TTGTTTCCTTATTCTTTTACTGGGAT 57.050 30.769 0.00 0.00 0.00 3.85
31 32 8.635328 GTTTGTTTCCTTATTCTTTTACTGGGA 58.365 33.333 0.00 0.00 0.00 4.37
32 33 8.417884 TGTTTGTTTCCTTATTCTTTTACTGGG 58.582 33.333 0.00 0.00 0.00 4.45
33 34 9.981114 ATGTTTGTTTCCTTATTCTTTTACTGG 57.019 29.630 0.00 0.00 0.00 4.00
35 36 9.981114 CCATGTTTGTTTCCTTATTCTTTTACT 57.019 29.630 0.00 0.00 0.00 2.24
36 37 8.708742 GCCATGTTTGTTTCCTTATTCTTTTAC 58.291 33.333 0.00 0.00 0.00 2.01
66 67 4.276183 CCACGTACTGCAGTAGATAGACAT 59.724 45.833 26.70 2.01 0.00 3.06
98 494 0.459759 GGTCTGGGATTCGACCGTTC 60.460 60.000 0.00 0.00 40.18 3.95
143 539 0.252284 ATGAGAGACCAAGGGACGGT 60.252 55.000 0.00 0.00 40.30 4.83
159 555 0.112025 TTGTGTGGCATGTGGGATGA 59.888 50.000 0.00 0.00 0.00 2.92
160 556 0.244450 GTTGTGTGGCATGTGGGATG 59.756 55.000 0.00 0.00 0.00 3.51
187 583 3.793144 GCGGAACCGAGCAGCAAG 61.793 66.667 17.63 0.00 42.83 4.01
208 604 3.495377 TGTGTAGTTTGTATTCGGTGCAC 59.505 43.478 8.80 8.80 0.00 4.57
209 605 3.729966 TGTGTAGTTTGTATTCGGTGCA 58.270 40.909 0.00 0.00 0.00 4.57
303 714 1.003118 TCTGGGATTTGACCGTTGGAG 59.997 52.381 0.00 0.00 0.00 3.86
324 735 2.034999 GGTTTGCCCCGTGATGGA 59.965 61.111 0.00 0.00 42.00 3.41
337 748 0.320160 GACGTTAGGCGGTCTGGTTT 60.320 55.000 0.00 0.00 46.52 3.27
349 760 5.293569 GTGGGATAAGACCAAATGACGTTAG 59.706 44.000 0.00 0.00 40.24 2.34
357 768 1.663695 CGCGTGGGATAAGACCAAAT 58.336 50.000 0.00 0.00 40.24 2.32
412 828 6.153170 TCCATCTGTGTAGTTTGTATTCGGTA 59.847 38.462 0.00 0.00 0.00 4.02
416 832 6.093633 GGGTTCCATCTGTGTAGTTTGTATTC 59.906 42.308 0.00 0.00 0.00 1.75
430 846 2.648059 GAATGACTGGGGTTCCATCTG 58.352 52.381 0.00 0.00 43.11 2.90
436 852 7.654022 TTAATTATTGGAATGACTGGGGTTC 57.346 36.000 0.00 0.00 0.00 3.62
467 883 9.892130 TGTTTAATTGTTGGAAATACTGGTTTT 57.108 25.926 0.00 0.00 0.00 2.43
468 884 9.892130 TTGTTTAATTGTTGGAAATACTGGTTT 57.108 25.926 0.00 0.00 0.00 3.27
469 885 9.892130 TTTGTTTAATTGTTGGAAATACTGGTT 57.108 25.926 0.00 0.00 0.00 3.67
470 886 9.892130 TTTTGTTTAATTGTTGGAAATACTGGT 57.108 25.926 0.00 0.00 0.00 4.00
499 915 0.395173 AGGGTGCCGTGTTTGTTTCT 60.395 50.000 0.00 0.00 0.00 2.52
500 916 0.248866 CAGGGTGCCGTGTTTGTTTC 60.249 55.000 2.99 0.00 0.00 2.78
518 934 1.669049 CGTACCGTGGTAGATGGGCA 61.669 60.000 0.00 0.00 34.56 5.36
520 936 2.496942 ACGTACCGTGGTAGATGGG 58.503 57.895 0.00 0.00 39.18 4.00
535 951 1.528309 CTTTGGAGGGTTGGCACGT 60.528 57.895 0.00 0.00 0.00 4.49
552 968 0.326618 ATGGGTCTGGGATTCGACCT 60.327 55.000 8.20 0.00 46.94 3.85
555 971 0.830648 GTGATGGGTCTGGGATTCGA 59.169 55.000 0.00 0.00 0.00 3.71
678 1096 0.593518 TTTCGCATGCGTGGTTTGTG 60.594 50.000 36.50 8.54 40.74 3.33
741 1160 9.165057 AGATAAATGGGGATAGATAGATTAGGC 57.835 37.037 0.00 0.00 0.00 3.93
757 1176 3.303791 GCGTCGGCTTTAAGATAAATGGG 60.304 47.826 0.00 0.00 35.83 4.00
762 1181 2.273557 GTGGCGTCGGCTTTAAGATAA 58.726 47.619 20.29 0.00 39.81 1.75
774 1193 0.865111 TTCTTGTGAATGTGGCGTCG 59.135 50.000 0.00 0.00 0.00 5.12
1112 1554 3.063197 GCGAGGGAGGAGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
1113 1555 2.520741 GCGAGGGAGGAGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1114 1556 2.520741 GGCGAGGGAGGAGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1115 1557 4.144727 GGGCGAGGGAGGAGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1157 1599 0.989890 CGATCCAAGAAACGACCGTC 59.010 55.000 0.00 0.00 0.00 4.79
1175 1627 2.442189 GTTCAAGAACGCATCCATCG 57.558 50.000 0.00 0.00 0.00 3.84
1198 1650 2.256117 ACAAGAAACGACCCCTCAAG 57.744 50.000 0.00 0.00 0.00 3.02
1229 1681 1.379843 CCAAAGAACCCCATCCCGG 60.380 63.158 0.00 0.00 0.00 5.73
1259 1711 0.246360 CAAATCCGGCAAGAAACCCC 59.754 55.000 0.00 0.00 0.00 4.95
1407 1869 0.182775 AAGCAAGAACAACCGGGACT 59.817 50.000 6.32 0.00 0.00 3.85
1459 1921 3.723348 GACCACGCCGCCAAGAAC 61.723 66.667 0.00 0.00 0.00 3.01
1486 1948 1.080501 TTGGAGCAGCTCGAACTCG 60.081 57.895 15.36 0.00 41.45 4.18
1493 1955 1.902938 AAGGAAAGTTGGAGCAGCTC 58.097 50.000 14.69 14.69 0.00 4.09
1555 2017 3.073735 CGACCCTCTGCTCTGGCT 61.074 66.667 0.00 0.00 39.59 4.75
1570 2058 0.179067 ACCCAAACGAGCAAGAACGA 60.179 50.000 0.00 0.00 0.00 3.85
1644 2132 3.127030 GGATCTTTTGGTTCGAAATCGCT 59.873 43.478 0.00 0.00 39.60 4.93
1645 2133 3.426323 GGATCTTTTGGTTCGAAATCGC 58.574 45.455 0.00 0.00 39.60 4.58
1646 2134 3.485216 CGGGATCTTTTGGTTCGAAATCG 60.485 47.826 0.00 0.00 41.45 3.34
1647 2135 3.439129 ACGGGATCTTTTGGTTCGAAATC 59.561 43.478 0.00 0.00 0.00 2.17
1648 2136 3.418047 ACGGGATCTTTTGGTTCGAAAT 58.582 40.909 0.00 0.00 0.00 2.17
1649 2137 2.853705 ACGGGATCTTTTGGTTCGAAA 58.146 42.857 0.00 0.00 0.00 3.46
1678 2199 2.279120 GGAGACGCATCCGCAGAG 60.279 66.667 0.00 0.00 38.40 3.35
1692 2213 6.830873 AATCCAAATTCAGAAACAGAGGAG 57.169 37.500 0.00 0.00 0.00 3.69
1718 2239 1.072331 GAAACTCTGCACCAAGAGGGA 59.928 52.381 5.76 0.00 46.73 4.20
1938 2459 1.002087 ACTGGAGTTCGAAATTCGGCT 59.998 47.619 15.76 13.38 40.88 5.52
1962 2483 2.092753 AGTTCTGAATCACATGCGGGAT 60.093 45.455 0.00 0.00 0.00 3.85
1963 2484 1.278985 AGTTCTGAATCACATGCGGGA 59.721 47.619 0.00 0.00 0.00 5.14
1964 2485 1.399440 CAGTTCTGAATCACATGCGGG 59.601 52.381 0.00 0.00 0.00 6.13
1965 2486 1.399440 CCAGTTCTGAATCACATGCGG 59.601 52.381 1.00 0.00 0.00 5.69
1966 2487 2.094894 GTCCAGTTCTGAATCACATGCG 59.905 50.000 1.00 0.00 0.00 4.73
1967 2488 2.421424 GGTCCAGTTCTGAATCACATGC 59.579 50.000 1.00 0.00 0.00 4.06
1968 2489 3.937706 GAGGTCCAGTTCTGAATCACATG 59.062 47.826 1.00 0.00 0.00 3.21
1969 2490 3.843027 AGAGGTCCAGTTCTGAATCACAT 59.157 43.478 1.00 0.00 0.00 3.21
1970 2491 3.242867 AGAGGTCCAGTTCTGAATCACA 58.757 45.455 1.00 0.00 0.00 3.58
1971 2492 3.971245 AGAGGTCCAGTTCTGAATCAC 57.029 47.619 1.00 0.00 0.00 3.06
1987 2508 4.751767 AGAAACTCAGCAGGATTAGAGG 57.248 45.455 0.00 0.00 32.52 3.69
1996 2517 4.843220 AACATGGAAAGAAACTCAGCAG 57.157 40.909 0.00 0.00 0.00 4.24
1997 2518 4.644234 TGAAACATGGAAAGAAACTCAGCA 59.356 37.500 0.00 0.00 0.00 4.41
1998 2519 5.009010 TCTGAAACATGGAAAGAAACTCAGC 59.991 40.000 0.00 0.00 0.00 4.26
2000 2521 7.403312 TTTCTGAAACATGGAAAGAAACTCA 57.597 32.000 0.00 0.00 33.21 3.41
2163 2688 0.038892 CAATGCACACCCAAGACAGC 60.039 55.000 0.00 0.00 0.00 4.40
2218 2743 5.585820 TTCACCCAACAAGTTCCTAAAAC 57.414 39.130 0.00 0.00 0.00 2.43
2226 2751 5.539955 AGCATCTAAATTCACCCAACAAGTT 59.460 36.000 0.00 0.00 0.00 2.66
2325 2852 5.583457 GGTGTAGTAATTCAAACCATACGCT 59.417 40.000 0.00 0.00 0.00 5.07
2528 3061 7.122204 AGCTAACCCAATTGAACCTACATTAAC 59.878 37.037 7.12 0.00 0.00 2.01
2530 3063 6.601613 CAGCTAACCCAATTGAACCTACATTA 59.398 38.462 7.12 0.00 0.00 1.90
2577 3110 2.270205 CTAGCACACAGGGCAGGG 59.730 66.667 0.00 0.00 0.00 4.45
2578 3111 2.437359 GCTAGCACACAGGGCAGG 60.437 66.667 10.63 0.00 0.00 4.85
2579 3112 1.744368 CTGCTAGCACACAGGGCAG 60.744 63.158 14.93 0.00 43.03 4.85
2580 3113 1.556373 ATCTGCTAGCACACAGGGCA 61.556 55.000 14.93 0.00 34.57 5.36
2581 3114 0.393537 AATCTGCTAGCACACAGGGC 60.394 55.000 14.93 0.00 34.57 5.19
2582 3115 2.119801 AAATCTGCTAGCACACAGGG 57.880 50.000 14.93 2.82 34.57 4.45
2583 3116 4.497006 GCAATAAATCTGCTAGCACACAGG 60.497 45.833 14.93 3.65 36.84 4.00
2584 3117 4.095334 TGCAATAAATCTGCTAGCACACAG 59.905 41.667 14.93 4.08 40.59 3.66
2585 3118 4.009002 TGCAATAAATCTGCTAGCACACA 58.991 39.130 14.93 0.44 40.59 3.72
2586 3119 4.621068 TGCAATAAATCTGCTAGCACAC 57.379 40.909 14.93 0.00 40.59 3.82
2589 3122 3.879295 GGAGTGCAATAAATCTGCTAGCA 59.121 43.478 18.22 18.22 40.59 3.49
2590 3123 3.059325 CGGAGTGCAATAAATCTGCTAGC 60.059 47.826 8.10 8.10 40.59 3.42
2591 3124 4.371786 TCGGAGTGCAATAAATCTGCTAG 58.628 43.478 0.00 0.00 40.59 3.42
2592 3125 4.400529 TCGGAGTGCAATAAATCTGCTA 57.599 40.909 0.00 0.00 40.59 3.49
2593 3126 3.266510 TCGGAGTGCAATAAATCTGCT 57.733 42.857 0.00 0.00 40.59 4.24
2594 3127 4.558538 AATCGGAGTGCAATAAATCTGC 57.441 40.909 0.00 0.00 40.35 4.26
2595 3128 6.324819 ACAAAATCGGAGTGCAATAAATCTG 58.675 36.000 0.00 0.00 0.00 2.90
2596 3129 6.515272 ACAAAATCGGAGTGCAATAAATCT 57.485 33.333 0.00 0.00 0.00 2.40
2597 3130 6.806249 TGAACAAAATCGGAGTGCAATAAATC 59.194 34.615 0.00 0.00 0.00 2.17
2598 3131 6.686630 TGAACAAAATCGGAGTGCAATAAAT 58.313 32.000 0.00 0.00 0.00 1.40
2599 3132 6.016693 TCTGAACAAAATCGGAGTGCAATAAA 60.017 34.615 0.00 0.00 31.19 1.40
2600 3133 5.471797 TCTGAACAAAATCGGAGTGCAATAA 59.528 36.000 0.00 0.00 31.19 1.40
2601 3134 5.000591 TCTGAACAAAATCGGAGTGCAATA 58.999 37.500 0.00 0.00 31.19 1.90
2602 3135 3.820467 TCTGAACAAAATCGGAGTGCAAT 59.180 39.130 0.00 0.00 31.19 3.56
2603 3136 3.210227 TCTGAACAAAATCGGAGTGCAA 58.790 40.909 0.00 0.00 31.19 4.08
2604 3137 2.844946 TCTGAACAAAATCGGAGTGCA 58.155 42.857 0.00 0.00 31.19 4.57
2605 3138 4.425577 AATCTGAACAAAATCGGAGTGC 57.574 40.909 0.00 0.00 38.09 4.40
2606 3139 8.853345 CAAAATAATCTGAACAAAATCGGAGTG 58.147 33.333 0.00 0.00 38.09 3.51
2607 3140 7.542130 GCAAAATAATCTGAACAAAATCGGAGT 59.458 33.333 0.00 0.00 38.09 3.85
2611 3144 7.816945 AGGCAAAATAATCTGAACAAAATCG 57.183 32.000 0.00 0.00 0.00 3.34
2632 3165 0.463620 TGGTTCAAACAAGGCAAGGC 59.536 50.000 0.00 0.00 0.00 4.35
2680 3215 6.449698 TCTGAACAAATTCAAATCCTTGAGC 58.550 36.000 0.00 0.00 44.28 4.26
2698 3233 5.741388 ATCGGAGTGCAATAAATCTGAAC 57.259 39.130 0.00 0.00 31.20 3.18
2700 3235 6.150976 ACAAAATCGGAGTGCAATAAATCTGA 59.849 34.615 0.00 0.00 0.00 3.27
2701 3236 6.324819 ACAAAATCGGAGTGCAATAAATCTG 58.675 36.000 0.00 0.00 0.00 2.90
2702 3237 6.515272 ACAAAATCGGAGTGCAATAAATCT 57.485 33.333 0.00 0.00 0.00 2.40
2703 3238 6.806249 TGAACAAAATCGGAGTGCAATAAATC 59.194 34.615 0.00 0.00 0.00 2.17
2704 3239 6.686630 TGAACAAAATCGGAGTGCAATAAAT 58.313 32.000 0.00 0.00 0.00 1.40
2705 3240 6.016693 TCTGAACAAAATCGGAGTGCAATAAA 60.017 34.615 0.00 0.00 31.19 1.40
2706 3241 5.471797 TCTGAACAAAATCGGAGTGCAATAA 59.528 36.000 0.00 0.00 31.19 1.40
2707 3242 5.000591 TCTGAACAAAATCGGAGTGCAATA 58.999 37.500 0.00 0.00 31.19 1.90
2708 3243 3.820467 TCTGAACAAAATCGGAGTGCAAT 59.180 39.130 0.00 0.00 31.19 3.56
2709 3244 3.210227 TCTGAACAAAATCGGAGTGCAA 58.790 40.909 0.00 0.00 31.19 4.08
2710 3245 2.844946 TCTGAACAAAATCGGAGTGCA 58.155 42.857 0.00 0.00 31.19 4.57
2711 3246 4.425577 AATCTGAACAAAATCGGAGTGC 57.574 40.909 0.00 0.00 38.09 4.40
2712 3247 8.853345 CAAAATAATCTGAACAAAATCGGAGTG 58.147 33.333 0.00 0.00 38.09 3.51
2713 3248 7.542130 GCAAAATAATCTGAACAAAATCGGAGT 59.458 33.333 0.00 0.00 38.09 3.85
2714 3249 7.009540 GGCAAAATAATCTGAACAAAATCGGAG 59.990 37.037 0.00 0.00 38.09 4.63
2715 3250 6.811170 GGCAAAATAATCTGAACAAAATCGGA 59.189 34.615 0.00 0.00 38.99 4.55
2716 3251 6.813152 AGGCAAAATAATCTGAACAAAATCGG 59.187 34.615 0.00 0.00 0.00 4.18
2717 3252 7.816945 AGGCAAAATAATCTGAACAAAATCG 57.183 32.000 0.00 0.00 0.00 3.34
2718 3253 7.959109 GCAAGGCAAAATAATCTGAACAAAATC 59.041 33.333 0.00 0.00 0.00 2.17
2719 3254 7.094677 GGCAAGGCAAAATAATCTGAACAAAAT 60.095 33.333 0.00 0.00 0.00 1.82
2720 3255 6.204495 GGCAAGGCAAAATAATCTGAACAAAA 59.796 34.615 0.00 0.00 0.00 2.44
2721 3256 5.700373 GGCAAGGCAAAATAATCTGAACAAA 59.300 36.000 0.00 0.00 0.00 2.83
2722 3257 5.011943 AGGCAAGGCAAAATAATCTGAACAA 59.988 36.000 0.00 0.00 0.00 2.83
2723 3258 4.527816 AGGCAAGGCAAAATAATCTGAACA 59.472 37.500 0.00 0.00 0.00 3.18
2724 3259 5.077134 AGGCAAGGCAAAATAATCTGAAC 57.923 39.130 0.00 0.00 0.00 3.18
2725 3260 5.011943 ACAAGGCAAGGCAAAATAATCTGAA 59.988 36.000 0.00 0.00 0.00 3.02
2726 3261 4.527816 ACAAGGCAAGGCAAAATAATCTGA 59.472 37.500 0.00 0.00 0.00 3.27
2727 3262 4.824289 ACAAGGCAAGGCAAAATAATCTG 58.176 39.130 0.00 0.00 0.00 2.90
2728 3263 5.488262 AACAAGGCAAGGCAAAATAATCT 57.512 34.783 0.00 0.00 0.00 2.40
2729 3264 5.700373 TCAAACAAGGCAAGGCAAAATAATC 59.300 36.000 0.00 0.00 0.00 1.75
2730 3265 5.619220 TCAAACAAGGCAAGGCAAAATAAT 58.381 33.333 0.00 0.00 0.00 1.28
2731 3266 5.028549 TCAAACAAGGCAAGGCAAAATAA 57.971 34.783 0.00 0.00 0.00 1.40
2732 3267 4.679373 TCAAACAAGGCAAGGCAAAATA 57.321 36.364 0.00 0.00 0.00 1.40
2733 3268 3.557228 TCAAACAAGGCAAGGCAAAAT 57.443 38.095 0.00 0.00 0.00 1.82
2734 3269 3.006247 GTTCAAACAAGGCAAGGCAAAA 58.994 40.909 0.00 0.00 0.00 2.44
2735 3270 2.626840 GTTCAAACAAGGCAAGGCAAA 58.373 42.857 0.00 0.00 0.00 3.68
2736 3271 1.134551 GGTTCAAACAAGGCAAGGCAA 60.135 47.619 0.00 0.00 0.00 4.52
2737 3272 0.463620 GGTTCAAACAAGGCAAGGCA 59.536 50.000 0.00 0.00 0.00 4.75
2738 3273 0.463620 TGGTTCAAACAAGGCAAGGC 59.536 50.000 0.00 0.00 0.00 4.35
2739 3274 2.430332 TCTTGGTTCAAACAAGGCAAGG 59.570 45.455 15.38 0.00 44.13 3.61
2740 3275 3.799281 TCTTGGTTCAAACAAGGCAAG 57.201 42.857 15.38 9.68 44.13 4.01
2741 3276 4.405358 AGATTCTTGGTTCAAACAAGGCAA 59.595 37.500 15.38 3.60 44.13 4.52
2742 3277 3.960102 AGATTCTTGGTTCAAACAAGGCA 59.040 39.130 15.38 2.99 44.13 4.75
2743 3278 4.037923 TCAGATTCTTGGTTCAAACAAGGC 59.962 41.667 15.38 5.55 44.13 4.35
2744 3279 5.766222 CTCAGATTCTTGGTTCAAACAAGG 58.234 41.667 15.38 0.00 44.13 3.61
2745 3280 5.218139 GCTCAGATTCTTGGTTCAAACAAG 58.782 41.667 9.09 9.09 45.08 3.16
2746 3281 4.644234 TGCTCAGATTCTTGGTTCAAACAA 59.356 37.500 0.00 0.00 0.00 2.83
2747 3282 4.206375 TGCTCAGATTCTTGGTTCAAACA 58.794 39.130 0.00 0.00 0.00 2.83
2748 3283 4.836125 TGCTCAGATTCTTGGTTCAAAC 57.164 40.909 0.00 0.00 0.00 2.93
2749 3284 5.850557 TTTGCTCAGATTCTTGGTTCAAA 57.149 34.783 0.00 0.00 0.00 2.69
2750 3285 5.850557 TTTTGCTCAGATTCTTGGTTCAA 57.149 34.783 0.00 0.00 0.00 2.69
2751 3286 6.151648 CCTATTTTGCTCAGATTCTTGGTTCA 59.848 38.462 0.00 0.00 0.00 3.18
2752 3287 6.151817 ACCTATTTTGCTCAGATTCTTGGTTC 59.848 38.462 0.00 0.00 0.00 3.62
2753 3288 6.012745 ACCTATTTTGCTCAGATTCTTGGTT 58.987 36.000 0.00 0.00 0.00 3.67
2754 3289 5.574188 ACCTATTTTGCTCAGATTCTTGGT 58.426 37.500 0.00 0.00 0.00 3.67
2755 3290 7.337942 AGTTACCTATTTTGCTCAGATTCTTGG 59.662 37.037 0.00 0.00 0.00 3.61
2756 3291 8.180267 CAGTTACCTATTTTGCTCAGATTCTTG 58.820 37.037 0.00 0.00 0.00 3.02
2757 3292 7.885399 ACAGTTACCTATTTTGCTCAGATTCTT 59.115 33.333 0.00 0.00 0.00 2.52
2758 3293 7.398024 ACAGTTACCTATTTTGCTCAGATTCT 58.602 34.615 0.00 0.00 0.00 2.40
2759 3294 7.334421 TGACAGTTACCTATTTTGCTCAGATTC 59.666 37.037 0.00 0.00 0.00 2.52
2760 3295 7.168219 TGACAGTTACCTATTTTGCTCAGATT 58.832 34.615 0.00 0.00 0.00 2.40
2761 3296 6.711277 TGACAGTTACCTATTTTGCTCAGAT 58.289 36.000 0.00 0.00 0.00 2.90
2762 3297 6.109156 TGACAGTTACCTATTTTGCTCAGA 57.891 37.500 0.00 0.00 0.00 3.27
2763 3298 5.163814 GCTGACAGTTACCTATTTTGCTCAG 60.164 44.000 3.99 0.00 0.00 3.35
2764 3299 4.695455 GCTGACAGTTACCTATTTTGCTCA 59.305 41.667 3.99 0.00 0.00 4.26
2765 3300 4.938226 AGCTGACAGTTACCTATTTTGCTC 59.062 41.667 3.99 0.00 0.00 4.26
2766 3301 4.911390 AGCTGACAGTTACCTATTTTGCT 58.089 39.130 3.99 0.00 0.00 3.91
2767 3302 4.695455 TGAGCTGACAGTTACCTATTTTGC 59.305 41.667 3.99 0.00 0.00 3.68
2768 3303 6.128172 CCTTGAGCTGACAGTTACCTATTTTG 60.128 42.308 3.99 0.00 0.00 2.44
2769 3304 5.940470 CCTTGAGCTGACAGTTACCTATTTT 59.060 40.000 3.99 0.00 0.00 1.82
2770 3305 5.248477 TCCTTGAGCTGACAGTTACCTATTT 59.752 40.000 3.99 0.00 0.00 1.40
2771 3306 4.777896 TCCTTGAGCTGACAGTTACCTATT 59.222 41.667 3.99 0.00 0.00 1.73
2772 3307 4.353777 TCCTTGAGCTGACAGTTACCTAT 58.646 43.478 3.99 0.00 0.00 2.57
2773 3308 3.774734 TCCTTGAGCTGACAGTTACCTA 58.225 45.455 3.99 0.00 0.00 3.08
2774 3309 2.609747 TCCTTGAGCTGACAGTTACCT 58.390 47.619 3.99 0.00 0.00 3.08
2775 3310 3.618690 ATCCTTGAGCTGACAGTTACC 57.381 47.619 3.99 0.00 0.00 2.85
2776 3311 4.997395 TCAAATCCTTGAGCTGACAGTTAC 59.003 41.667 3.99 0.00 36.62 2.50
2777 3312 5.227569 TCAAATCCTTGAGCTGACAGTTA 57.772 39.130 3.99 0.00 36.62 2.24
2778 3313 4.090761 TCAAATCCTTGAGCTGACAGTT 57.909 40.909 3.99 0.00 36.62 3.16
2779 3314 3.777106 TCAAATCCTTGAGCTGACAGT 57.223 42.857 3.99 0.00 36.62 3.55
2780 3315 5.640189 AATTCAAATCCTTGAGCTGACAG 57.360 39.130 0.00 0.00 42.48 3.51
2781 3316 5.302568 ACAAATTCAAATCCTTGAGCTGACA 59.697 36.000 0.00 0.00 42.48 3.58
2782 3317 5.776744 ACAAATTCAAATCCTTGAGCTGAC 58.223 37.500 0.00 0.00 42.48 3.51
2783 3318 6.409524 AACAAATTCAAATCCTTGAGCTGA 57.590 33.333 0.00 0.00 42.48 4.26
2784 3319 6.073440 CCAAACAAATTCAAATCCTTGAGCTG 60.073 38.462 0.00 0.00 42.48 4.24
2785 3320 5.993441 CCAAACAAATTCAAATCCTTGAGCT 59.007 36.000 0.00 0.00 42.48 4.09
2786 3321 5.334337 GCCAAACAAATTCAAATCCTTGAGC 60.334 40.000 0.00 0.00 42.48 4.26
2787 3322 5.759273 TGCCAAACAAATTCAAATCCTTGAG 59.241 36.000 0.00 0.00 42.48 3.02
2788 3323 5.678583 TGCCAAACAAATTCAAATCCTTGA 58.321 33.333 0.00 0.00 39.87 3.02
2789 3324 5.049267 CCTGCCAAACAAATTCAAATCCTTG 60.049 40.000 0.00 0.00 0.00 3.61
2790 3325 5.065235 CCTGCCAAACAAATTCAAATCCTT 58.935 37.500 0.00 0.00 0.00 3.36
2791 3326 4.644498 CCTGCCAAACAAATTCAAATCCT 58.356 39.130 0.00 0.00 0.00 3.24
2792 3327 3.189080 GCCTGCCAAACAAATTCAAATCC 59.811 43.478 0.00 0.00 0.00 3.01
2793 3328 3.814283 TGCCTGCCAAACAAATTCAAATC 59.186 39.130 0.00 0.00 0.00 2.17
2794 3329 3.565063 GTGCCTGCCAAACAAATTCAAAT 59.435 39.130 0.00 0.00 0.00 2.32
2795 3330 2.941720 GTGCCTGCCAAACAAATTCAAA 59.058 40.909 0.00 0.00 0.00 2.69
2796 3331 2.559440 GTGCCTGCCAAACAAATTCAA 58.441 42.857 0.00 0.00 0.00 2.69
2797 3332 1.202627 GGTGCCTGCCAAACAAATTCA 60.203 47.619 0.00 0.00 0.00 2.57
2798 3333 1.202627 TGGTGCCTGCCAAACAAATTC 60.203 47.619 0.00 0.00 35.25 2.17
2799 3334 0.835941 TGGTGCCTGCCAAACAAATT 59.164 45.000 0.00 0.00 35.25 1.82
2800 3335 0.835941 TTGGTGCCTGCCAAACAAAT 59.164 45.000 2.53 0.00 44.67 2.32
2801 3336 2.290847 TTGGTGCCTGCCAAACAAA 58.709 47.368 2.53 0.00 44.67 2.83
2802 3337 4.040645 TTGGTGCCTGCCAAACAA 57.959 50.000 2.53 0.00 44.67 2.83
2854 3389 0.095935 CTGAAGGAGCATTGAACGCG 59.904 55.000 3.53 3.53 0.00 6.01
2857 3392 3.128242 CCATGTCTGAAGGAGCATTGAAC 59.872 47.826 0.00 0.00 0.00 3.18
2932 3467 1.206849 TGATCGTGCAATGGTAGCTGA 59.793 47.619 0.00 0.00 0.00 4.26
2939 3474 2.572191 AAATGCTGATCGTGCAATGG 57.428 45.000 15.47 0.00 44.01 3.16
2972 3522 4.597004 ACAAGAAAGCATGGATGATGAGT 58.403 39.130 0.00 0.00 33.31 3.41
2990 3540 5.491070 TCATTGGTCATCTGGAGTAACAAG 58.509 41.667 0.00 0.00 0.00 3.16
3017 3567 2.432510 GTCCTCCATGTCGATCTCCTTT 59.567 50.000 0.00 0.00 0.00 3.11
3045 3595 1.134250 GTCAGGCATTTCCTCCTCCTC 60.134 57.143 0.00 0.00 45.52 3.71
3046 3596 0.915364 GTCAGGCATTTCCTCCTCCT 59.085 55.000 0.00 0.00 45.52 3.69
3047 3597 0.620556 TGTCAGGCATTTCCTCCTCC 59.379 55.000 0.00 0.00 45.52 4.30
3110 3660 5.456192 AGAAGCTGTAAATTTCATCGACG 57.544 39.130 0.00 0.00 0.00 5.12
3113 3663 7.525688 TCTGTAGAAGCTGTAAATTTCATCG 57.474 36.000 0.00 0.00 0.00 3.84
3235 3788 4.464069 ACTCCTACAGCACAGAGAATTC 57.536 45.455 0.00 0.00 0.00 2.17
3273 3826 2.843730 AGATTGGTGTGCCATGTAGGTA 59.156 45.455 0.00 0.00 45.56 3.08
3330 3883 1.860641 TCCTTACCTCGATGAGCCAA 58.139 50.000 0.00 0.00 0.00 4.52
3336 3889 3.990469 CGAATGGAATCCTTACCTCGATG 59.010 47.826 0.00 0.00 0.00 3.84
3339 3892 3.728076 TCGAATGGAATCCTTACCTCG 57.272 47.619 0.00 1.23 0.00 4.63
3379 3932 5.207110 TCAGAGCATATCAAGAAGGCTAC 57.793 43.478 0.00 0.00 34.44 3.58
3380 3933 5.876651 TTCAGAGCATATCAAGAAGGCTA 57.123 39.130 0.00 0.00 34.44 3.93
3381 3934 4.767578 TTCAGAGCATATCAAGAAGGCT 57.232 40.909 0.00 0.00 37.56 4.58
3382 3935 5.824904 TTTTCAGAGCATATCAAGAAGGC 57.175 39.130 0.00 0.00 0.00 4.35
3402 3958 7.554835 GGGGTTTTGTAAGAACTTTCCATTTTT 59.445 33.333 0.00 0.00 0.00 1.94
3403 3959 7.051623 GGGGTTTTGTAAGAACTTTCCATTTT 58.948 34.615 0.00 0.00 0.00 1.82
3404 3960 6.157123 TGGGGTTTTGTAAGAACTTTCCATTT 59.843 34.615 0.00 0.00 0.00 2.32
3424 3980 2.692709 TGGACAATGAAACATGGGGT 57.307 45.000 0.00 0.00 0.00 4.95
3522 4078 2.725203 TTCCTGGCAACGTTCTCCCG 62.725 60.000 12.17 6.99 42.51 5.14
3533 4089 1.681666 CTGGAGCTTCTTCCTGGCA 59.318 57.895 0.00 0.00 38.12 4.92
3608 4164 0.594110 GGATCAGATCCTCGACGACC 59.406 60.000 21.00 0.00 46.19 4.79
3721 4288 6.098679 CCTAGTGTCAATTCTCTGAAGACAG 58.901 44.000 0.00 0.00 44.66 3.51
3746 4313 3.068873 CCTCTCCTGCAGAGTTACCATAC 59.931 52.174 17.39 0.00 46.85 2.39
3770 4337 1.081892 CTCAAGCCTGTCCACAATCG 58.918 55.000 0.00 0.00 0.00 3.34
3777 4344 1.967319 TGTTGAACTCAAGCCTGTCC 58.033 50.000 0.00 0.00 36.39 4.02
3789 4356 3.660865 AGTAGGAACCGACATGTTGAAC 58.339 45.455 15.09 5.30 0.00 3.18
3801 4368 3.451178 TGAAGCAGTATGGAGTAGGAACC 59.549 47.826 0.00 0.00 35.86 3.62
3804 4371 4.546674 TCATGAAGCAGTATGGAGTAGGA 58.453 43.478 0.00 0.00 35.86 2.94
3828 4395 0.676151 CTGCTGCCTTGAGGAACCTC 60.676 60.000 13.32 13.32 43.01 3.85
3868 4435 0.616111 AGGTGAGGAGCCGTGATCTT 60.616 55.000 0.00 0.00 0.00 2.40
3869 4436 0.616111 AAGGTGAGGAGCCGTGATCT 60.616 55.000 0.00 0.00 0.00 2.75
3870 4437 0.460987 CAAGGTGAGGAGCCGTGATC 60.461 60.000 0.00 0.00 37.62 2.92
3871 4438 1.599047 CAAGGTGAGGAGCCGTGAT 59.401 57.895 0.00 0.00 37.62 3.06
3872 4439 2.583441 CCAAGGTGAGGAGCCGTGA 61.583 63.158 0.00 0.00 37.62 4.35
3873 4440 1.903877 ATCCAAGGTGAGGAGCCGTG 61.904 60.000 0.00 0.00 38.83 4.94
3874 4441 1.613630 ATCCAAGGTGAGGAGCCGT 60.614 57.895 0.00 0.00 38.83 5.68
3875 4442 1.144936 GATCCAAGGTGAGGAGCCG 59.855 63.158 0.00 0.00 38.83 5.52
3876 4443 0.842635 ATGATCCAAGGTGAGGAGCC 59.157 55.000 0.00 0.00 40.77 4.70
3878 4445 2.092538 AGCAATGATCCAAGGTGAGGAG 60.093 50.000 0.00 0.00 38.83 3.69
3879 4446 1.918262 AGCAATGATCCAAGGTGAGGA 59.082 47.619 0.00 0.00 39.97 3.71
3880 4447 2.092538 AGAGCAATGATCCAAGGTGAGG 60.093 50.000 0.00 0.00 0.00 3.86
3906 4473 8.818141 ATGCAACACTCATACATAGTACATAC 57.182 34.615 0.00 0.00 0.00 2.39
3907 4474 9.260002 CAATGCAACACTCATACATAGTACATA 57.740 33.333 0.00 0.00 0.00 2.29
3908 4475 7.254898 GCAATGCAACACTCATACATAGTACAT 60.255 37.037 0.00 0.00 0.00 2.29
3909 4476 6.037062 GCAATGCAACACTCATACATAGTACA 59.963 38.462 0.00 0.00 0.00 2.90
3910 4477 6.258727 AGCAATGCAACACTCATACATAGTAC 59.741 38.462 8.35 0.00 0.00 2.73
3913 4480 5.746307 AGCAATGCAACACTCATACATAG 57.254 39.130 8.35 0.00 0.00 2.23
3914 4481 5.415389 ACAAGCAATGCAACACTCATACATA 59.585 36.000 8.35 0.00 0.00 2.29
3916 4483 3.569277 ACAAGCAATGCAACACTCATACA 59.431 39.130 8.35 0.00 0.00 2.29
3917 4484 4.083110 AGACAAGCAATGCAACACTCATAC 60.083 41.667 8.35 0.00 0.00 2.39
3918 4485 4.074259 AGACAAGCAATGCAACACTCATA 58.926 39.130 8.35 0.00 0.00 2.15
3919 4486 2.889045 AGACAAGCAATGCAACACTCAT 59.111 40.909 8.35 0.00 0.00 2.90
3920 4487 2.033675 CAGACAAGCAATGCAACACTCA 59.966 45.455 8.35 0.00 0.00 3.41
3921 4488 2.291465 TCAGACAAGCAATGCAACACTC 59.709 45.455 8.35 0.00 0.00 3.51
3922 4489 2.033801 GTCAGACAAGCAATGCAACACT 59.966 45.455 8.35 0.00 0.00 3.55
3923 4490 2.223548 TGTCAGACAAGCAATGCAACAC 60.224 45.455 8.35 0.00 0.00 3.32
3924 4491 2.022934 TGTCAGACAAGCAATGCAACA 58.977 42.857 8.35 0.00 0.00 3.33
3925 4492 2.223548 TGTGTCAGACAAGCAATGCAAC 60.224 45.455 8.35 0.00 0.00 4.17
3926 4493 2.022934 TGTGTCAGACAAGCAATGCAA 58.977 42.857 8.35 0.00 0.00 4.08
3993 4560 1.067250 GACCAGGCTGAGCTCGATC 59.933 63.158 17.94 0.40 0.00 3.69
4093 4660 3.660621 GCACTTGCTCCAGGACAC 58.339 61.111 0.00 0.00 38.21 3.67
4103 4670 4.755614 GCAGCTCGCAGCACTTGC 62.756 66.667 10.16 7.67 45.56 4.01
4113 4680 2.738846 AGAGTATTTTGTGTGCAGCTCG 59.261 45.455 0.00 0.00 0.00 5.03
4158 4725 5.092554 TGAAAGACAGTACAAAGTGTGGA 57.907 39.130 0.00 0.00 39.44 4.02
4159 4726 6.038161 TGAATGAAAGACAGTACAAAGTGTGG 59.962 38.462 0.00 0.00 39.44 4.17
4163 4730 6.483640 GGTCTGAATGAAAGACAGTACAAAGT 59.516 38.462 5.97 0.00 44.86 2.66
4164 4731 6.483307 TGGTCTGAATGAAAGACAGTACAAAG 59.517 38.462 5.97 0.00 44.86 2.77
4165 4732 6.353323 TGGTCTGAATGAAAGACAGTACAAA 58.647 36.000 5.97 0.00 44.86 2.83
4166 4733 5.924356 TGGTCTGAATGAAAGACAGTACAA 58.076 37.500 5.97 0.00 44.86 2.41
4167 4734 5.545063 TGGTCTGAATGAAAGACAGTACA 57.455 39.130 5.97 0.00 44.86 2.90
4168 4735 5.992217 AGTTGGTCTGAATGAAAGACAGTAC 59.008 40.000 5.97 0.00 44.86 2.73
4169 4736 6.174720 AGTTGGTCTGAATGAAAGACAGTA 57.825 37.500 5.97 0.00 44.86 2.74
4225 4799 1.076412 TGAGCCAAACAGCCAACCA 60.076 52.632 0.00 0.00 0.00 3.67
4226 4800 1.109323 AGTGAGCCAAACAGCCAACC 61.109 55.000 0.00 0.00 0.00 3.77
4227 4801 0.031178 CAGTGAGCCAAACAGCCAAC 59.969 55.000 0.00 0.00 0.00 3.77
4228 4802 1.108727 CCAGTGAGCCAAACAGCCAA 61.109 55.000 0.00 0.00 0.00 4.52
4229 4803 1.529010 CCAGTGAGCCAAACAGCCA 60.529 57.895 0.00 0.00 0.00 4.75
4412 4987 0.743097 ATGTAGTAAGTCGTCGGCCC 59.257 55.000 0.00 0.00 0.00 5.80
4413 4988 1.402968 TGATGTAGTAAGTCGTCGGCC 59.597 52.381 0.00 0.00 0.00 6.13
4414 4989 2.448219 GTGATGTAGTAAGTCGTCGGC 58.552 52.381 0.00 0.00 0.00 5.54
4415 4990 2.538333 CGGTGATGTAGTAAGTCGTCGG 60.538 54.545 0.00 0.00 0.00 4.79
4416 4991 2.094894 ACGGTGATGTAGTAAGTCGTCG 59.905 50.000 0.00 0.00 0.00 5.12
4417 4992 3.120060 ACACGGTGATGTAGTAAGTCGTC 60.120 47.826 16.29 0.00 0.00 4.20
4418 4993 2.816087 ACACGGTGATGTAGTAAGTCGT 59.184 45.455 16.29 0.00 0.00 4.34
4419 4994 3.126514 AGACACGGTGATGTAGTAAGTCG 59.873 47.826 16.29 0.00 31.24 4.18
4420 4995 4.660105 GAGACACGGTGATGTAGTAAGTC 58.340 47.826 16.29 0.00 31.24 3.01
4442 5017 4.555348 TTTTAGCACTTGTTGTTACCCG 57.445 40.909 0.00 0.00 0.00 5.28
4443 5018 5.975344 GTCTTTTTAGCACTTGTTGTTACCC 59.025 40.000 0.00 0.00 0.00 3.69
4444 5019 5.975344 GGTCTTTTTAGCACTTGTTGTTACC 59.025 40.000 0.00 0.00 0.00 2.85
4455 5030 0.179222 GCTCGCGGTCTTTTTAGCAC 60.179 55.000 6.13 0.00 0.00 4.40
4467 5042 0.670546 TTCTCTTCTTTGGCTCGCGG 60.671 55.000 6.13 0.00 0.00 6.46
4468 5043 1.127582 CTTTCTCTTCTTTGGCTCGCG 59.872 52.381 0.00 0.00 0.00 5.87
4475 5050 5.238214 CACCACCTCTTCTTTCTCTTCTTTG 59.762 44.000 0.00 0.00 0.00 2.77
4485 5060 2.775384 TGTACACCACCACCTCTTCTTT 59.225 45.455 0.00 0.00 0.00 2.52
4490 5065 2.303022 CTCAATGTACACCACCACCTCT 59.697 50.000 0.00 0.00 0.00 3.69
4491 5066 2.615493 CCTCAATGTACACCACCACCTC 60.615 54.545 0.00 0.00 0.00 3.85
4492 5067 1.351017 CCTCAATGTACACCACCACCT 59.649 52.381 0.00 0.00 0.00 4.00
4544 5119 2.545537 ACGTTGGTCTCCTTTCTTCC 57.454 50.000 0.00 0.00 0.00 3.46
4547 5122 1.872653 GCGAACGTTGGTCTCCTTTCT 60.873 52.381 5.00 0.00 0.00 2.52
4548 5123 0.511653 GCGAACGTTGGTCTCCTTTC 59.488 55.000 5.00 0.00 0.00 2.62
4551 5126 1.006102 CAGCGAACGTTGGTCTCCT 60.006 57.895 5.00 0.00 0.00 3.69
4585 5160 4.877823 TGTTAAGTTATACCGAGAGAGCGA 59.122 41.667 0.00 0.00 0.00 4.93
4633 5223 3.668191 CACACACACACACAAACTCAAAC 59.332 43.478 0.00 0.00 0.00 2.93
4634 5224 3.316588 ACACACACACACACAAACTCAAA 59.683 39.130 0.00 0.00 0.00 2.69
4635 5225 2.881513 ACACACACACACACAAACTCAA 59.118 40.909 0.00 0.00 0.00 3.02
4636 5226 2.499197 ACACACACACACACAAACTCA 58.501 42.857 0.00 0.00 0.00 3.41
4637 5227 3.058570 TCAACACACACACACACAAACTC 60.059 43.478 0.00 0.00 0.00 3.01
4638 5228 2.881513 TCAACACACACACACACAAACT 59.118 40.909 0.00 0.00 0.00 2.66
4639 5229 3.275400 TCAACACACACACACACAAAC 57.725 42.857 0.00 0.00 0.00 2.93
4640 5230 3.366781 CCATCAACACACACACACACAAA 60.367 43.478 0.00 0.00 0.00 2.83
4641 5231 2.163211 CCATCAACACACACACACACAA 59.837 45.455 0.00 0.00 0.00 3.33
4642 5232 1.742268 CCATCAACACACACACACACA 59.258 47.619 0.00 0.00 0.00 3.72
4645 5235 1.388547 ACCCATCAACACACACACAC 58.611 50.000 0.00 0.00 0.00 3.82
4845 5442 5.593909 TGGGGCTCAACAACATTATAGATTG 59.406 40.000 0.00 0.00 0.00 2.67
4851 5448 3.737559 TCTGGGGCTCAACAACATTAT 57.262 42.857 0.00 0.00 0.00 1.28
4859 5456 4.541973 ATTTCAAATTCTGGGGCTCAAC 57.458 40.909 0.00 0.00 0.00 3.18
4863 5460 4.594491 AGTCAAATTTCAAATTCTGGGGCT 59.406 37.500 0.00 0.00 0.00 5.19
4899 5496 8.228206 TCCTCCTAATCTACAGAATATGACACT 58.772 37.037 0.00 0.00 0.00 3.55
4917 5514 2.701951 ACACGTTTCAGGTTCCTCCTAA 59.298 45.455 0.00 0.00 46.24 2.69
4935 5533 3.936372 TCTAGTACAACTCAGCCACAC 57.064 47.619 0.00 0.00 0.00 3.82
4966 5566 2.437651 CAGATCTCTTCCCTCCCCTTTC 59.562 54.545 0.00 0.00 0.00 2.62
5056 5784 4.954092 CAGACTTTGCTACCAGGAAATC 57.046 45.455 0.00 0.00 35.03 2.17
5107 5835 3.791245 TGAATTCAAACCCAACAACAGC 58.209 40.909 5.45 0.00 0.00 4.40
5143 5871 3.191371 AGTTCAAAATTCCGAGACATGCC 59.809 43.478 0.00 0.00 0.00 4.40
5146 5874 6.263168 AGTCAAAGTTCAAAATTCCGAGACAT 59.737 34.615 0.00 0.00 0.00 3.06
5153 5881 6.739112 ACTGCTAGTCAAAGTTCAAAATTCC 58.261 36.000 0.00 0.00 0.00 3.01
5181 5909 0.824759 CTAGGTCCTAGTGCCACCAC 59.175 60.000 16.84 0.00 42.39 4.16
5182 5910 0.708209 TCTAGGTCCTAGTGCCACCA 59.292 55.000 22.85 1.83 35.72 4.17
5196 5925 6.041069 CCAGATTCCTACTACTTGGTTCTAGG 59.959 46.154 0.00 0.00 0.00 3.02
5211 5940 2.291475 TGCAAACATGCCCAGATTCCTA 60.291 45.455 0.00 0.00 0.00 2.94
5329 6085 1.758936 TGGCATTCCAGATCTTGCAG 58.241 50.000 16.78 0.00 37.47 4.41
5356 6112 0.247736 AGTGAAGCGAACCCTGCTAG 59.752 55.000 0.00 0.00 43.14 3.42
5359 6115 2.035442 GGAGTGAAGCGAACCCTGC 61.035 63.158 0.00 0.00 0.00 4.85
5364 6120 0.531974 TGTGGTGGAGTGAAGCGAAC 60.532 55.000 0.00 0.00 0.00 3.95
5380 6136 0.033796 ATCTCAAGGGGGCATGTGTG 60.034 55.000 0.00 0.00 0.00 3.82
5408 6164 1.056700 AAGATCACATCGGGAGGGGG 61.057 60.000 0.00 0.00 0.00 5.40
5414 6170 0.734889 GGCAACAAGATCACATCGGG 59.265 55.000 0.00 0.00 0.00 5.14
5415 6171 0.734889 GGGCAACAAGATCACATCGG 59.265 55.000 0.00 0.00 39.74 4.18
5417 6173 1.747355 CCAGGGCAACAAGATCACATC 59.253 52.381 0.00 0.00 39.74 3.06
5502 6258 1.611673 GCACTGCCAACCTGTCTGTAT 60.612 52.381 0.00 0.00 0.00 2.29
5503 6259 0.250295 GCACTGCCAACCTGTCTGTA 60.250 55.000 0.00 0.00 0.00 2.74
5504 6260 1.526917 GCACTGCCAACCTGTCTGT 60.527 57.895 0.00 0.00 0.00 3.41
5505 6261 1.228063 AGCACTGCCAACCTGTCTG 60.228 57.895 0.00 0.00 0.00 3.51
5529 6285 4.401519 CCACTTTGTACTACTAGCTGGCTA 59.598 45.833 0.00 2.23 0.00 3.93
5530 6286 3.195825 CCACTTTGTACTACTAGCTGGCT 59.804 47.826 0.00 0.00 0.00 4.75
5531 6287 3.056035 ACCACTTTGTACTACTAGCTGGC 60.056 47.826 0.00 0.00 0.00 4.85
5532 6288 4.381718 GGACCACTTTGTACTACTAGCTGG 60.382 50.000 0.00 0.00 0.00 4.85
5533 6289 4.463186 AGGACCACTTTGTACTACTAGCTG 59.537 45.833 0.00 0.00 0.00 4.24
5585 6343 3.073798 TGACACCACCAATAAGTCCATGT 59.926 43.478 0.00 0.00 0.00 3.21
5586 6344 3.440173 GTGACACCACCAATAAGTCCATG 59.560 47.826 0.00 0.00 37.33 3.66
5623 6381 0.818296 CCTTAGTCCGAGGTCACTGG 59.182 60.000 0.00 0.00 0.00 4.00
5625 6383 3.666345 ATACCTTAGTCCGAGGTCACT 57.334 47.619 0.00 0.00 44.04 3.41
5626 6384 6.402456 AATAATACCTTAGTCCGAGGTCAC 57.598 41.667 0.00 0.00 44.04 3.67
5671 6435 3.288964 TCAGGTTCCTGCTACTACTAGC 58.711 50.000 13.44 0.00 45.19 3.42
5721 6524 7.226523 ACTTCCATTCAAATTTTGTAAAGGCAC 59.773 33.333 8.89 0.00 0.00 5.01
5728 6531 6.983307 CACACCACTTCCATTCAAATTTTGTA 59.017 34.615 8.89 0.01 0.00 2.41
5729 6532 5.816777 CACACCACTTCCATTCAAATTTTGT 59.183 36.000 8.89 0.00 0.00 2.83
5747 6550 0.605319 GTTGGCTTCGGATCACACCA 60.605 55.000 0.00 0.00 0.00 4.17
5769 6572 0.518636 ACATCTGCACGTTCACATGC 59.481 50.000 3.57 0.00 42.40 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.