Multiple sequence alignment - TraesCS7B01G472100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G472100 chr7B 100.000 2804 0 0 1 2804 728011754 728014557 0.000000e+00 5179
1 TraesCS7B01G472100 chr7B 84.111 1586 172 46 1225 2792 728005896 728007419 0.000000e+00 1459
2 TraesCS7B01G472100 chr7B 85.553 533 69 7 304 833 728025776 728026303 4.080000e-153 551
3 TraesCS7B01G472100 chr7B 85.370 540 70 7 302 837 728029325 728029859 4.080000e-153 551
4 TraesCS7B01G472100 chr7B 84.934 531 65 7 302 819 728052963 728053491 8.900000e-145 523
5 TraesCS7B01G472100 chr7B 90.449 178 13 3 117 294 728004995 728005168 6.040000e-57 231
6 TraesCS7B01G472100 chr7A 88.039 1831 156 27 1013 2804 722898502 722900308 0.000000e+00 2109
7 TraesCS7B01G472100 chr7A 86.957 1840 147 41 1015 2804 723074737 723076533 0.000000e+00 1982
8 TraesCS7B01G472100 chr7A 87.702 1732 154 26 1013 2707 722988013 722989722 0.000000e+00 1964
9 TraesCS7B01G472100 chr7A 84.944 1594 175 37 1225 2797 722877621 722879170 0.000000e+00 1554
10 TraesCS7B01G472100 chr7A 84.837 1596 174 38 1225 2797 722793086 722794636 0.000000e+00 1544
11 TraesCS7B01G472100 chr7A 85.017 881 98 20 1934 2799 722938574 722939435 0.000000e+00 865
12 TraesCS7B01G472100 chr7A 84.424 886 104 20 1934 2804 723031384 723032250 0.000000e+00 841
13 TraesCS7B01G472100 chr7A 92.529 522 25 1 1013 1520 723030856 723031377 0.000000e+00 736
14 TraesCS7B01G472100 chr7A 87.713 586 65 7 297 879 723030189 723030770 0.000000e+00 676
15 TraesCS7B01G472100 chr7A 87.201 586 68 7 297 879 722935892 722936473 0.000000e+00 660
16 TraesCS7B01G472100 chr7A 86.993 592 68 9 291 879 722987342 722987927 0.000000e+00 658
17 TraesCS7B01G472100 chr7A 87.348 577 66 7 306 879 722897844 722898416 0.000000e+00 654
18 TraesCS7B01G472100 chr7A 86.824 592 69 9 291 879 723074064 723074649 0.000000e+00 652
19 TraesCS7B01G472100 chr7A 93.352 361 10 1 1013 1359 722936559 722936919 3.200000e-144 521
20 TraesCS7B01G472100 chr7A 81.560 423 54 12 826 1242 722792670 722793074 7.490000e-86 327
21 TraesCS7B01G472100 chr7A 81.324 423 55 12 826 1242 722877205 722877609 3.480000e-84 322
22 TraesCS7B01G472100 chr7A 91.667 156 13 0 1365 1520 722938412 722938567 1.690000e-52 217
23 TraesCS7B01G472100 chr7D 83.709 1596 158 57 1225 2804 627298537 627300046 0.000000e+00 1413
24 TraesCS7B01G472100 chr7D 94.095 779 38 2 568 1338 627304661 627305439 0.000000e+00 1177
25 TraesCS7B01G472100 chr7D 91.076 381 29 3 1 381 627304291 627304666 6.930000e-141 510
26 TraesCS7B01G472100 chr7D 89.367 395 24 8 1732 2112 627305467 627305857 5.430000e-132 481
27 TraesCS7B01G472100 chr7D 94.554 202 10 1 1042 1242 627298324 627298525 7.540000e-81 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G472100 chr7B 728011754 728014557 2803 False 5179.000000 5179 100.000000 1 2804 1 chr7B.!!$F1 2803
1 TraesCS7B01G472100 chr7B 728004995 728007419 2424 False 845.000000 1459 87.280000 117 2792 2 chr7B.!!$F3 2675
2 TraesCS7B01G472100 chr7B 728025776 728029859 4083 False 551.000000 551 85.461500 302 837 2 chr7B.!!$F4 535
3 TraesCS7B01G472100 chr7B 728052963 728053491 528 False 523.000000 523 84.934000 302 819 1 chr7B.!!$F2 517
4 TraesCS7B01G472100 chr7A 722897844 722900308 2464 False 1381.500000 2109 87.693500 306 2804 2 chr7A.!!$F3 2498
5 TraesCS7B01G472100 chr7A 723074064 723076533 2469 False 1317.000000 1982 86.890500 291 2804 2 chr7A.!!$F7 2513
6 TraesCS7B01G472100 chr7A 722987342 722989722 2380 False 1311.000000 1964 87.347500 291 2707 2 chr7A.!!$F5 2416
7 TraesCS7B01G472100 chr7A 722877205 722879170 1965 False 938.000000 1554 83.134000 826 2797 2 chr7A.!!$F2 1971
8 TraesCS7B01G472100 chr7A 722792670 722794636 1966 False 935.500000 1544 83.198500 826 2797 2 chr7A.!!$F1 1971
9 TraesCS7B01G472100 chr7A 723030189 723032250 2061 False 751.000000 841 88.222000 297 2804 3 chr7A.!!$F6 2507
10 TraesCS7B01G472100 chr7A 722935892 722939435 3543 False 565.750000 865 89.309250 297 2799 4 chr7A.!!$F4 2502
11 TraesCS7B01G472100 chr7D 627298324 627300046 1722 False 862.000000 1413 89.131500 1042 2804 2 chr7D.!!$F1 1762
12 TraesCS7B01G472100 chr7D 627304291 627305857 1566 False 722.666667 1177 91.512667 1 2112 3 chr7D.!!$F2 2111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 439 0.169894 GCTTTACAGCAGAGCAAGCC 59.83 55.0 0.0 0.0 46.49 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 7280 0.983467 TTGCTGGAGCTGGACACATA 59.017 50.0 0.0 0.0 42.66 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.787532 GTATTGAGCTAATTTTGCAGTCAAATA 57.212 29.630 10.03 3.35 41.37 1.40
80 81 9.541143 TTTTCTTTCATTTCAATTGTTAGGGAC 57.459 29.630 5.13 0.00 0.00 4.46
89 90 6.134535 TCAATTGTTAGGGACATACCAACT 57.865 37.500 5.13 0.00 38.26 3.16
95 96 5.487488 TGTTAGGGACATACCAACTTCAGAT 59.513 40.000 0.00 0.00 41.20 2.90
100 101 6.049790 GGGACATACCAACTTCAGATAAGAC 58.950 44.000 0.00 0.00 41.20 3.01
102 103 7.069578 GGGACATACCAACTTCAGATAAGACTA 59.930 40.741 0.00 0.00 41.20 2.59
103 104 7.921745 GGACATACCAACTTCAGATAAGACTAC 59.078 40.741 0.00 0.00 38.79 2.73
168 169 8.620416 CATATAAACTAGGTTGCAATGCTTACA 58.380 33.333 6.82 0.00 0.00 2.41
233 234 6.546972 TTTGACAAAACCTTTTTGTTGTCC 57.453 33.333 16.07 6.33 45.97 4.02
257 258 6.382608 CCCTTTTCTTCCTCGATTCTTTTTC 58.617 40.000 0.00 0.00 0.00 2.29
258 259 6.207614 CCCTTTTCTTCCTCGATTCTTTTTCT 59.792 38.462 0.00 0.00 0.00 2.52
259 260 7.255625 CCCTTTTCTTCCTCGATTCTTTTTCTT 60.256 37.037 0.00 0.00 0.00 2.52
389 394 3.952323 CGGGTACTAGGTTCTCTTGATGA 59.048 47.826 0.00 0.00 0.00 2.92
402 407 3.596214 TCTTGATGAAAACCTAGACCGC 58.404 45.455 0.00 0.00 0.00 5.68
403 408 3.260884 TCTTGATGAAAACCTAGACCGCT 59.739 43.478 0.00 0.00 0.00 5.52
433 438 3.691110 GCTTTACAGCAGAGCAAGC 57.309 52.632 0.00 0.00 46.49 4.01
434 439 0.169894 GCTTTACAGCAGAGCAAGCC 59.830 55.000 0.00 0.00 46.49 4.35
446 451 0.178981 AGCAAGCCACATCCTGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
529 535 1.901085 GTGCGATGAAGAGGGAGGT 59.099 57.895 0.00 0.00 0.00 3.85
667 674 1.303309 CCCTTCACGATGGCAAGATC 58.697 55.000 0.00 0.00 0.00 2.75
850 4528 9.118236 CAAATGTTTCTTAGTAAAGCTTACAGC 57.882 33.333 0.00 0.00 42.84 4.40
911 4589 6.837471 AGACAAGACGGAACTAGATAAACT 57.163 37.500 0.00 0.00 0.00 2.66
916 4594 8.746530 ACAAGACGGAACTAGATAAACTGATAA 58.253 33.333 0.00 0.00 0.00 1.75
947 4654 1.745320 CGCCTACCGCCCATCTACTT 61.745 60.000 0.00 0.00 0.00 2.24
963 4674 4.511527 TCTACTTACAGTACTCTCCACGG 58.488 47.826 0.00 0.00 0.00 4.94
1000 4711 4.816385 CCCAAGCCACTATACATACACAAG 59.184 45.833 0.00 0.00 0.00 3.16
1051 4762 7.163845 GTCGTCTTCGTCTACATACACAAATAG 59.836 40.741 0.00 0.00 38.33 1.73
1100 4825 2.123251 ACCGGATCGAGCTCCCAT 60.123 61.111 9.46 0.00 31.04 4.00
1379 6621 2.574399 GAACCTCTCGGCGAGCTT 59.426 61.111 31.01 20.54 38.49 3.74
1412 6654 4.465512 CGCTACCCGTACGCGTGT 62.466 66.667 24.59 13.92 41.78 4.49
1430 6672 2.747460 GACCGCTGCAAGATGCCA 60.747 61.111 0.00 0.00 44.23 4.92
1502 6744 3.859414 GGCTGCTCCTGGCTCGAT 61.859 66.667 0.00 0.00 42.39 3.59
1577 6819 0.909610 ATCTGAACCTTCCGGCTCCA 60.910 55.000 0.00 0.00 0.00 3.86
1667 6918 6.182039 CTGTTCTCAGTTGAAAGTTGTTGA 57.818 37.500 0.00 0.00 36.97 3.18
1708 6959 7.281100 GTGCTATATTTGGTGTTTAGCTTCTCT 59.719 37.037 0.00 0.00 36.94 3.10
1860 7118 7.279981 TGGTTTGCTATATATGTGTGTCAGTTC 59.720 37.037 0.00 0.00 0.00 3.01
1890 7148 5.814188 TGATACTTTGATGCAGCTAGAACTG 59.186 40.000 2.53 0.00 40.80 3.16
1892 7150 4.645535 ACTTTGATGCAGCTAGAACTGAA 58.354 39.130 2.53 0.00 40.25 3.02
1940 7206 4.836125 TGTTTCTTGAGCTGATTTGGTC 57.164 40.909 0.00 0.00 35.28 4.02
2019 7310 4.756642 CCAGCTCCAGCAATTTTATATCGA 59.243 41.667 0.48 0.00 45.16 3.59
2020 7311 5.334414 CCAGCTCCAGCAATTTTATATCGAC 60.334 44.000 0.48 0.00 45.16 4.20
2021 7312 5.468072 CAGCTCCAGCAATTTTATATCGACT 59.532 40.000 0.48 0.00 45.16 4.18
2022 7313 6.017605 CAGCTCCAGCAATTTTATATCGACTT 60.018 38.462 0.48 0.00 45.16 3.01
2023 7314 7.171508 CAGCTCCAGCAATTTTATATCGACTTA 59.828 37.037 0.48 0.00 45.16 2.24
2024 7315 7.171678 AGCTCCAGCAATTTTATATCGACTTAC 59.828 37.037 0.48 0.00 45.16 2.34
2025 7316 7.171678 GCTCCAGCAATTTTATATCGACTTACT 59.828 37.037 0.00 0.00 41.59 2.24
2026 7317 8.365399 TCCAGCAATTTTATATCGACTTACTG 57.635 34.615 0.00 0.00 0.00 2.74
2027 7318 8.201464 TCCAGCAATTTTATATCGACTTACTGA 58.799 33.333 0.00 0.00 0.00 3.41
2028 7319 8.491152 CCAGCAATTTTATATCGACTTACTGAG 58.509 37.037 0.00 0.00 0.00 3.35
2115 7412 9.778741 TTCTCAACAGTTAATAAGACAATCACT 57.221 29.630 0.00 0.00 0.00 3.41
2155 7460 4.644685 GGTGTTGTGCCCATTTCATATAGT 59.355 41.667 0.00 0.00 0.00 2.12
2156 7461 5.825679 GGTGTTGTGCCCATTTCATATAGTA 59.174 40.000 0.00 0.00 0.00 1.82
2157 7462 6.017109 GGTGTTGTGCCCATTTCATATAGTAG 60.017 42.308 0.00 0.00 0.00 2.57
2166 7472 9.959721 GCCCATTTCATATAGTAGATAGGAAAA 57.040 33.333 8.06 0.00 37.66 2.29
2181 7487 4.105754 AGGAAAAGGAGGAAAAGGTCAG 57.894 45.455 0.00 0.00 0.00 3.51
2226 7532 4.065789 GGATGATAAAAGGGTCGATCCAC 58.934 47.826 19.03 1.54 38.11 4.02
2235 7541 2.106857 AGGGTCGATCCACTCCTAGTAG 59.893 54.545 19.03 0.00 38.11 2.57
2238 7544 3.434739 GGTCGATCCACTCCTAGTAGGAA 60.435 52.174 19.59 5.59 39.01 3.36
2239 7545 3.816523 GTCGATCCACTCCTAGTAGGAAG 59.183 52.174 19.59 14.34 45.28 3.46
2240 7546 2.554893 CGATCCACTCCTAGTAGGAAGC 59.445 54.545 19.59 7.04 45.28 3.86
2242 7548 3.468071 TCCACTCCTAGTAGGAAGCAA 57.532 47.619 19.59 3.94 45.28 3.91
2243 7549 3.995636 TCCACTCCTAGTAGGAAGCAAT 58.004 45.455 19.59 1.17 45.28 3.56
2244 7550 3.706594 TCCACTCCTAGTAGGAAGCAATG 59.293 47.826 19.59 9.49 45.28 2.82
2247 7553 4.160439 CACTCCTAGTAGGAAGCAATGTCA 59.840 45.833 19.59 0.00 45.28 3.58
2248 7554 4.965532 ACTCCTAGTAGGAAGCAATGTCAT 59.034 41.667 19.59 0.00 45.28 3.06
2257 7563 9.851686 AGTAGGAAGCAATGTCATATTAATTGA 57.148 29.630 0.00 0.00 33.96 2.57
2280 7586 8.243961 TGAACTATGATTTCCAAACCTTTTCA 57.756 30.769 0.00 0.00 0.00 2.69
2315 7621 4.730600 CCAAAAGTGGCTTTGCAAATAC 57.269 40.909 13.23 12.05 38.35 1.89
2368 7674 1.014352 GTGAAACGTGAAGTGTGCCT 58.986 50.000 0.00 0.00 0.00 4.75
2385 7691 3.313526 GTGCCTCATGCTTTACATACCAG 59.686 47.826 0.00 0.00 42.00 4.00
2396 7702 5.243060 GCTTTACATACCAGTTCCCAAGTTT 59.757 40.000 0.00 0.00 0.00 2.66
2402 7708 7.867921 ACATACCAGTTCCCAAGTTTATGATA 58.132 34.615 0.00 0.00 0.00 2.15
2411 7717 8.416329 GTTCCCAAGTTTATGATATTGCTTCAT 58.584 33.333 0.00 0.00 37.56 2.57
2468 7783 6.916387 CGGAGTAATTAAGCACTCTATTTCGA 59.084 38.462 15.23 0.00 40.83 3.71
2469 7784 7.096558 CGGAGTAATTAAGCACTCTATTTCGAC 60.097 40.741 15.23 1.04 40.83 4.20
2473 7788 9.512435 GTAATTAAGCACTCTATTTCGACACTA 57.488 33.333 0.00 0.00 0.00 2.74
2480 7799 9.015367 AGCACTCTATTTCGACACTATATATGT 57.985 33.333 0.00 0.00 0.00 2.29
2524 7843 9.884636 TTCGATATAGGAAATCAGAAGAACAAA 57.115 29.630 0.00 0.00 0.00 2.83
2529 7848 3.511540 GGAAATCAGAAGAACAAAGGGGG 59.488 47.826 0.00 0.00 0.00 5.40
2594 7913 5.155643 TGAAACAAAATCATGCATGTCGAG 58.844 37.500 25.43 14.96 0.00 4.04
2615 7934 6.762187 TCGAGTACAGTGTTATTCAAAACCAA 59.238 34.615 0.00 0.00 0.00 3.67
2616 7935 6.849305 CGAGTACAGTGTTATTCAAAACCAAC 59.151 38.462 0.00 0.00 0.00 3.77
2617 7936 6.721321 AGTACAGTGTTATTCAAAACCAACG 58.279 36.000 0.00 0.00 0.00 4.10
2650 7972 6.564709 TTTCAGCTGCATGGATATACATTC 57.435 37.500 9.47 0.00 0.00 2.67
2662 7984 9.333724 CATGGATATACATTCATAATGCTAGCA 57.666 33.333 21.85 21.85 42.69 3.49
2672 7995 9.537173 CATTCATAATGCTAGCACACTGCACAT 62.537 40.741 22.07 2.99 37.73 3.21
2768 8091 3.627395 AGTGAAAGACAACTGGACACA 57.373 42.857 0.00 0.00 31.87 3.72
2769 8092 4.156455 AGTGAAAGACAACTGGACACAT 57.844 40.909 0.00 0.00 31.87 3.21
2772 8095 5.702670 AGTGAAAGACAACTGGACACATATG 59.297 40.000 0.00 0.00 31.87 1.78
2799 8122 0.175760 TGAATCCAGCGCACTCCTAC 59.824 55.000 11.47 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.357652 TGCAAAATTAGCTCAATACAATTCTTC 57.642 29.630 0.00 0.00 0.00 2.87
59 60 8.527810 GGTATGTCCCTAACAATTGAAATGAAA 58.472 33.333 13.59 0.00 42.37 2.69
61 62 7.178573 TGGTATGTCCCTAACAATTGAAATGA 58.821 34.615 13.59 0.00 42.37 2.57
67 68 6.432783 TGAAGTTGGTATGTCCCTAACAATTG 59.567 38.462 3.24 3.24 42.37 2.32
69 70 6.012858 TCTGAAGTTGGTATGTCCCTAACAAT 60.013 38.462 0.00 0.00 42.37 2.71
70 71 5.308497 TCTGAAGTTGGTATGTCCCTAACAA 59.692 40.000 0.00 0.00 42.37 2.83
80 81 8.470805 AGTGTAGTCTTATCTGAAGTTGGTATG 58.529 37.037 0.00 0.00 0.00 2.39
102 103 7.834110 GGAAGCTTCCCATGACACATAGTGT 62.834 48.000 31.91 1.91 44.55 3.55
103 104 3.272574 AGCTTCCCATGACACATAGTG 57.727 47.619 0.00 0.00 39.75 2.74
168 169 1.449601 CGTCAAGGGTGCGCCTATT 60.450 57.895 17.49 8.87 34.45 1.73
233 234 5.966742 AAAAGAATCGAGGAAGAAAAGGG 57.033 39.130 0.00 0.00 0.00 3.95
389 394 2.677037 CGATTCCAGCGGTCTAGGTTTT 60.677 50.000 0.00 0.00 0.00 2.43
402 407 3.670627 GCTGTAAAGCAAACCGATTCCAG 60.671 47.826 0.00 0.00 34.41 3.86
403 408 2.227865 GCTGTAAAGCAAACCGATTCCA 59.772 45.455 0.00 0.00 34.41 3.53
620 627 3.371063 GGGTCCACTCTCGCACGA 61.371 66.667 0.00 0.00 0.00 4.35
621 628 4.436998 GGGGTCCACTCTCGCACG 62.437 72.222 0.00 0.00 0.00 5.34
622 629 1.327690 TATGGGGTCCACTCTCGCAC 61.328 60.000 0.00 0.00 35.80 5.34
667 674 1.519751 TTGGGCGGTCGGATTTTGTG 61.520 55.000 0.00 0.00 0.00 3.33
911 4589 2.764010 AGGCGTGGTGAGTACATTATCA 59.236 45.455 0.00 0.00 0.00 2.15
916 4594 0.822164 GGTAGGCGTGGTGAGTACAT 59.178 55.000 0.00 0.00 0.00 2.29
947 4654 2.238144 AGTAGCCGTGGAGAGTACTGTA 59.762 50.000 0.00 0.00 0.00 2.74
1000 4711 4.452455 ACACACTCTAGCTGCATTTTGTAC 59.548 41.667 1.02 0.00 0.00 2.90
1051 4762 1.282875 GTTGTGGCTGCCGTTTCTC 59.717 57.895 14.98 0.95 0.00 2.87
1100 4825 2.045708 GCCGGGCATGATGAACACA 61.046 57.895 15.62 0.00 0.00 3.72
1216 4941 4.489771 GGGTGATGGCAGGGACGG 62.490 72.222 0.00 0.00 0.00 4.79
1577 6819 1.202330 CCTCATGTTCCTCTGCCTCT 58.798 55.000 0.00 0.00 0.00 3.69
1658 6909 2.736400 GCAAGCACAGCTTCAACAACTT 60.736 45.455 0.50 0.00 46.77 2.66
1729 6983 6.432783 TCTGGAAACACAAAGTCAAAGAGAAA 59.567 34.615 0.00 0.00 35.60 2.52
1860 7118 3.848019 GCTGCATCAAAGTATCAAACACG 59.152 43.478 0.00 0.00 0.00 4.49
1890 7148 9.727627 GAATCACATGAAATAACCTGAAGATTC 57.272 33.333 0.00 0.00 32.50 2.52
1892 7150 9.471702 AAGAATCACATGAAATAACCTGAAGAT 57.528 29.630 0.00 0.00 0.00 2.40
1940 7206 6.189677 TCGGCTAATGTCAAATAAAACAGG 57.810 37.500 0.00 0.00 0.00 4.00
1981 7247 3.055385 GGAGCTGGACACATAGTTAACCA 60.055 47.826 0.88 0.00 0.00 3.67
1989 7280 0.983467 TTGCTGGAGCTGGACACATA 59.017 50.000 0.00 0.00 42.66 2.29
2040 7334 7.933577 TGAGCTAGCTATGTATTAATGCAACTT 59.066 33.333 19.38 0.00 0.00 2.66
2075 7369 8.969260 AACTGTTGAGAAATCAGATATATGCA 57.031 30.769 0.00 0.00 33.93 3.96
2155 7460 6.733807 TGACCTTTTCCTCCTTTTCCTATCTA 59.266 38.462 0.00 0.00 0.00 1.98
2156 7461 5.551977 TGACCTTTTCCTCCTTTTCCTATCT 59.448 40.000 0.00 0.00 0.00 1.98
2157 7462 5.816682 TGACCTTTTCCTCCTTTTCCTATC 58.183 41.667 0.00 0.00 0.00 2.08
2166 7472 3.395941 ACACATTCTGACCTTTTCCTCCT 59.604 43.478 0.00 0.00 0.00 3.69
2168 7474 5.163713 GCATACACATTCTGACCTTTTCCTC 60.164 44.000 0.00 0.00 0.00 3.71
2169 7475 4.702131 GCATACACATTCTGACCTTTTCCT 59.298 41.667 0.00 0.00 0.00 3.36
2171 7477 5.627499 TGCATACACATTCTGACCTTTTC 57.373 39.130 0.00 0.00 0.00 2.29
2175 7481 4.162888 TCTCATGCATACACATTCTGACCT 59.837 41.667 0.00 0.00 0.00 3.85
2181 7487 8.102800 TCCATTAATCTCATGCATACACATTC 57.897 34.615 0.00 0.00 0.00 2.67
2226 7532 5.543507 ATGACATTGCTTCCTACTAGGAG 57.456 43.478 4.93 0.00 46.73 3.69
2257 7563 8.869109 TGATGAAAAGGTTTGGAAATCATAGTT 58.131 29.630 0.00 0.00 0.00 2.24
2261 7567 9.880157 CTAATGATGAAAAGGTTTGGAAATCAT 57.120 29.630 0.00 0.00 35.57 2.45
2273 7579 6.271488 TGGTTTCTGCTAATGATGAAAAGG 57.729 37.500 0.00 0.00 31.47 3.11
2280 7586 5.567423 GCCACTTTTGGTTTCTGCTAATGAT 60.567 40.000 0.00 0.00 45.98 2.45
2368 7674 4.018870 TGGGAACTGGTATGTAAAGCATGA 60.019 41.667 0.00 0.00 38.47 3.07
2385 7691 7.771183 TGAAGCAATATCATAAACTTGGGAAC 58.229 34.615 0.00 0.00 0.00 3.62
2426 7732 9.823647 AATTACTCCGATGATGTCAATATATCC 57.176 33.333 0.00 0.00 0.00 2.59
2436 7750 5.918608 AGTGCTTAATTACTCCGATGATGT 58.081 37.500 0.00 0.00 0.00 3.06
2443 7757 6.916387 TCGAAATAGAGTGCTTAATTACTCCG 59.084 38.462 12.92 10.09 43.32 4.63
2485 7804 6.982852 TCCTATATCGAAACATTGAGACTCC 58.017 40.000 0.00 0.00 0.00 3.85
2490 7809 9.481340 TCTGATTTCCTATATCGAAACATTGAG 57.519 33.333 0.00 0.00 32.30 3.02
2567 7886 5.553123 ACATGCATGATTTTGTTTCATGGT 58.447 33.333 32.75 1.36 46.81 3.55
2568 7887 5.220322 CGACATGCATGATTTTGTTTCATGG 60.220 40.000 32.75 3.52 46.81 3.66
2581 7900 2.231235 ACACTGTACTCGACATGCATGA 59.769 45.455 32.75 10.08 37.45 3.07
2586 7905 6.944557 TTGAATAACACTGTACTCGACATG 57.055 37.500 0.00 0.00 37.45 3.21
2594 7913 6.717413 TCGTTGGTTTTGAATAACACTGTAC 58.283 36.000 0.00 0.00 0.00 2.90
2650 7972 2.679336 TGTGCAGTGTGCTAGCATTATG 59.321 45.455 22.51 19.15 45.31 1.90
2662 7984 2.302733 TGTGTCCTATGATGTGCAGTGT 59.697 45.455 0.00 0.00 0.00 3.55
2672 7995 4.776349 ACAGTTGTGTTTGTGTCCTATGA 58.224 39.130 0.00 0.00 30.30 2.15
2779 8102 0.461548 TAGGAGTGCGCTGGATTCAG 59.538 55.000 3.44 0.00 43.64 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.