Multiple sequence alignment - TraesCS7B01G471700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G471700 chr7B 100.000 2813 0 0 1 2813 727640448 727637636 0.000000e+00 5195.0
1 TraesCS7B01G471700 chr7B 85.809 303 34 8 10 308 727645359 727645062 2.100000e-81 313.0
2 TraesCS7B01G471700 chr7B 91.549 213 17 1 68 279 727649951 727649739 2.740000e-75 292.0
3 TraesCS7B01G471700 chr7B 79.048 210 37 7 2239 2444 490241135 490240929 1.360000e-28 137.0
4 TraesCS7B01G471700 chr7B 92.453 53 4 0 2761 2813 6798352 6798404 3.000000e-10 76.8
5 TraesCS7B01G471700 chr7D 92.992 1270 64 10 725 1976 627085645 627086907 0.000000e+00 1829.0
6 TraesCS7B01G471700 chr7D 93.014 501 32 2 1 501 627084939 627085436 0.000000e+00 728.0
7 TraesCS7B01G471700 chr7D 87.739 261 25 5 23 279 627062972 627063229 5.890000e-77 298.0
8 TraesCS7B01G471700 chr7D 87.356 261 27 5 23 279 627075119 627075377 7.620000e-76 294.0
9 TraesCS7B01G471700 chr7D 83.333 288 35 3 2490 2765 627093398 627093684 1.290000e-63 254.0
10 TraesCS7B01G471700 chr7D 84.151 265 30 7 1 263 627080197 627080451 2.160000e-61 246.0
11 TraesCS7B01G471700 chr7D 79.452 219 37 8 2162 2375 62124241 62124026 6.280000e-32 148.0
12 TraesCS7B01G471700 chr7D 88.571 105 9 3 176 279 626911722 626911824 1.060000e-24 124.0
13 TraesCS7B01G471700 chr7D 90.541 74 6 1 2022 2094 627093006 627093079 2.310000e-16 97.1
14 TraesCS7B01G471700 chr7D 88.136 59 4 3 2108 2163 618495493 618495435 1.810000e-07 67.6
15 TraesCS7B01G471700 chr7A 92.616 1246 67 9 864 2094 722592004 722593239 0.000000e+00 1768.0
16 TraesCS7B01G471700 chr7A 89.590 634 46 9 10 639 722591363 722591980 0.000000e+00 787.0
17 TraesCS7B01G471700 chr7A 86.545 275 22 8 2488 2749 722594975 722595247 3.550000e-74 289.0
18 TraesCS7B01G471700 chr7A 95.833 48 2 0 2116 2163 105214027 105213980 8.350000e-11 78.7
19 TraesCS7B01G471700 chr7A 91.667 48 4 0 2116 2163 20953705 20953752 1.810000e-07 67.6
20 TraesCS7B01G471700 chr7A 100.000 29 0 0 2091 2119 4989459 4989431 1.000000e-03 54.7
21 TraesCS7B01G471700 chr2B 82.229 332 40 17 2160 2483 770566398 770566078 4.620000e-68 268.0
22 TraesCS7B01G471700 chr2B 77.397 292 50 15 2164 2445 383638817 383638532 2.900000e-35 159.0
23 TraesCS7B01G471700 chr2B 95.918 49 2 0 2765 2813 590930689 590930641 2.320000e-11 80.5
24 TraesCS7B01G471700 chr2B 95.833 48 2 0 2766 2813 449850018 449850065 8.350000e-11 78.7
25 TraesCS7B01G471700 chr6B 79.245 212 41 3 2164 2373 578900729 578900519 8.120000e-31 145.0
26 TraesCS7B01G471700 chr6B 95.833 48 2 0 2766 2813 720403258 720403211 8.350000e-11 78.7
27 TraesCS7B01G471700 chr4D 79.070 215 40 5 2163 2375 15347735 15347524 2.920000e-30 143.0
28 TraesCS7B01G471700 chr4D 95.833 48 2 0 2766 2813 47979041 47978994 8.350000e-11 78.7
29 TraesCS7B01G471700 chr5B 79.397 199 39 2 2166 2362 634269382 634269580 3.780000e-29 139.0
30 TraesCS7B01G471700 chr5B 79.310 203 35 6 2164 2362 290107248 290107447 4.890000e-28 135.0
31 TraesCS7B01G471700 chr5B 100.000 29 0 0 2090 2118 205456088 205456060 1.000000e-03 54.7
32 TraesCS7B01G471700 chr5B 100.000 29 0 0 2090 2118 594099827 594099855 1.000000e-03 54.7
33 TraesCS7B01G471700 chr5D 74.914 291 59 14 2164 2446 324595337 324595621 1.370000e-23 121.0
34 TraesCS7B01G471700 chr5D 100.000 31 0 0 2088 2118 366007823 366007853 1.090000e-04 58.4
35 TraesCS7B01G471700 chrUn 86.316 95 13 0 176 270 83610888 83610982 1.380000e-18 104.0
36 TraesCS7B01G471700 chrUn 100.000 28 0 0 2091 2118 147150031 147150058 5.000000e-03 52.8
37 TraesCS7B01G471700 chrUn 100.000 28 0 0 2091 2118 147231825 147231852 5.000000e-03 52.8
38 TraesCS7B01G471700 chr4A 73.898 295 54 19 2164 2445 663855548 663855832 2.310000e-16 97.1
39 TraesCS7B01G471700 chr4A 95.238 42 0 2 2433 2473 4600979 4601019 6.500000e-07 65.8
40 TraesCS7B01G471700 chr6A 97.917 48 1 0 2766 2813 14381692 14381739 1.800000e-12 84.2
41 TraesCS7B01G471700 chr6A 95.833 48 2 0 2766 2813 508712782 508712735 8.350000e-11 78.7
42 TraesCS7B01G471700 chr6D 95.833 48 2 0 2766 2813 44922250 44922203 8.350000e-11 78.7
43 TraesCS7B01G471700 chr6D 95.833 48 2 0 2116 2163 159234350 159234397 8.350000e-11 78.7
44 TraesCS7B01G471700 chr3D 95.833 48 2 0 2116 2163 32592163 32592116 8.350000e-11 78.7
45 TraesCS7B01G471700 chr2D 95.833 48 2 0 2116 2163 43106645 43106692 8.350000e-11 78.7
46 TraesCS7B01G471700 chr2D 78.448 116 21 3 2323 2437 13367627 13367515 3.890000e-09 73.1
47 TraesCS7B01G471700 chr2A 95.833 48 2 0 2116 2163 611962285 611962332 8.350000e-11 78.7
48 TraesCS7B01G471700 chr1D 95.833 48 2 0 2766 2813 98129572 98129525 8.350000e-11 78.7
49 TraesCS7B01G471700 chr1D 94.737 38 0 2 2082 2118 451118139 451118103 1.090000e-04 58.4
50 TraesCS7B01G471700 chr5A 95.652 46 2 0 2120 2165 3809867 3809912 1.080000e-09 75.0
51 TraesCS7B01G471700 chr1B 93.333 45 3 0 2120 2164 251021114 251021070 1.810000e-07 67.6
52 TraesCS7B01G471700 chr1A 100.000 29 0 0 2091 2119 13380773 13380745 1.000000e-03 54.7
53 TraesCS7B01G471700 chr3A 100.000 28 0 0 2091 2118 731094943 731094916 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G471700 chr7B 727637636 727640448 2812 True 5195.0 5195 100.000000 1 2813 1 chr7B.!!$R2 2812
1 TraesCS7B01G471700 chr7D 627084939 627086907 1968 False 1278.5 1829 93.003000 1 1976 2 chr7D.!!$F5 1975
2 TraesCS7B01G471700 chr7A 722591363 722595247 3884 False 948.0 1768 89.583667 10 2749 3 chr7A.!!$F2 2739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 228 0.037326 GGCTGTTCGAGTGTGGATCA 60.037 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2211 0.963355 TTTACTGTTCATGCCCGGGC 60.963 55.0 39.4 39.4 42.35 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 6.183360 GGCATGTACTATGAATGTATCCATGC 60.183 42.308 11.24 11.24 42.78 4.06
89 92 1.901464 GTTGGGTTGTCACGGCCAT 60.901 57.895 2.24 0.00 0.00 4.40
100 103 0.179156 CACGGCCATGAGATTTGCAC 60.179 55.000 2.24 0.00 0.00 4.57
105 108 1.904144 CCATGAGATTTGCACTTGCG 58.096 50.000 0.00 0.00 45.83 4.85
180 183 1.874019 CGGAAGGTCGAGCGATGTG 60.874 63.158 9.28 0.00 0.00 3.21
214 217 1.403679 CTAGAGGAGACAGGCTGTTCG 59.596 57.143 22.98 0.00 0.00 3.95
225 228 0.037326 GGCTGTTCGAGTGTGGATCA 60.037 55.000 0.00 0.00 0.00 2.92
231 234 3.181470 TGTTCGAGTGTGGATCAGACAAA 60.181 43.478 0.00 0.00 29.61 2.83
232 235 3.303881 TCGAGTGTGGATCAGACAAAG 57.696 47.619 0.00 0.00 29.61 2.77
236 239 3.999663 GAGTGTGGATCAGACAAAGAAGG 59.000 47.826 0.00 0.00 29.61 3.46
340 343 0.955178 TGATCGGAGAGATTCGCTCC 59.045 55.000 22.51 22.51 44.97 4.70
454 457 2.113433 CCAGCACAGCAGGCATCTC 61.113 63.158 0.00 0.00 0.00 2.75
487 490 0.507358 GTCTTCACCAAAGTCGTCGC 59.493 55.000 0.00 0.00 36.31 5.19
502 522 1.824329 TCGCCCCTCTCGATCTCAC 60.824 63.158 0.00 0.00 0.00 3.51
520 540 0.459489 ACCTCAGATTCTCAGCTCGC 59.541 55.000 0.00 0.00 0.00 5.03
645 688 2.361610 CGGGCTGCAGGTTCCATT 60.362 61.111 17.12 0.00 0.00 3.16
646 689 2.703798 CGGGCTGCAGGTTCCATTG 61.704 63.158 17.12 0.00 0.00 2.82
647 690 1.607467 GGGCTGCAGGTTCCATTGT 60.607 57.895 17.12 0.00 0.00 2.71
648 691 0.323360 GGGCTGCAGGTTCCATTGTA 60.323 55.000 17.12 0.00 0.00 2.41
649 692 1.098050 GGCTGCAGGTTCCATTGTAG 58.902 55.000 17.12 0.00 0.00 2.74
650 693 0.453390 GCTGCAGGTTCCATTGTAGC 59.547 55.000 17.12 5.71 43.75 3.58
651 694 1.825090 CTGCAGGTTCCATTGTAGCA 58.175 50.000 5.57 0.00 0.00 3.49
652 695 1.470098 CTGCAGGTTCCATTGTAGCAC 59.530 52.381 5.57 0.00 0.00 4.40
653 696 0.811281 GCAGGTTCCATTGTAGCACC 59.189 55.000 0.00 0.00 0.00 5.01
654 697 1.086696 CAGGTTCCATTGTAGCACCG 58.913 55.000 0.00 0.00 32.32 4.94
667 710 2.514592 CACCGGCGATGCTCCATT 60.515 61.111 9.30 0.00 0.00 3.16
670 713 1.227527 CCGGCGATGCTCCATTGTA 60.228 57.895 9.30 0.00 0.00 2.41
695 738 4.129737 CACGTGGAGGCCGATCGT 62.130 66.667 15.09 11.20 35.12 3.73
696 739 4.129737 ACGTGGAGGCCGATCGTG 62.130 66.667 15.09 6.80 33.55 4.35
697 740 4.129737 CGTGGAGGCCGATCGTGT 62.130 66.667 15.09 0.00 0.00 4.49
698 741 2.767445 CGTGGAGGCCGATCGTGTA 61.767 63.158 15.09 0.00 0.00 2.90
699 742 1.226888 GTGGAGGCCGATCGTGTAC 60.227 63.158 15.09 0.00 0.00 2.90
700 743 2.416260 GGAGGCCGATCGTGTACC 59.584 66.667 15.09 9.77 0.00 3.34
701 744 2.416260 GAGGCCGATCGTGTACCC 59.584 66.667 15.09 6.17 0.00 3.69
702 745 3.148031 GAGGCCGATCGTGTACCCC 62.148 68.421 15.09 4.43 0.00 4.95
703 746 3.152400 GGCCGATCGTGTACCCCT 61.152 66.667 15.09 0.00 0.00 4.79
704 747 2.106332 GCCGATCGTGTACCCCTG 59.894 66.667 15.09 0.00 0.00 4.45
705 748 2.106332 CCGATCGTGTACCCCTGC 59.894 66.667 15.09 0.00 0.00 4.85
706 749 2.278596 CGATCGTGTACCCCTGCG 60.279 66.667 7.03 0.00 0.00 5.18
707 750 2.890371 GATCGTGTACCCCTGCGT 59.110 61.111 0.00 0.00 0.00 5.24
708 751 1.518572 GATCGTGTACCCCTGCGTG 60.519 63.158 0.00 0.00 0.00 5.34
709 752 3.659089 ATCGTGTACCCCTGCGTGC 62.659 63.158 0.00 0.00 0.00 5.34
710 753 4.673298 CGTGTACCCCTGCGTGCA 62.673 66.667 0.00 0.00 0.00 4.57
711 754 2.046314 GTGTACCCCTGCGTGCAT 60.046 61.111 0.00 0.00 30.82 3.96
712 755 2.046411 TGTACCCCTGCGTGCATG 60.046 61.111 0.09 0.09 0.00 4.06
713 756 3.508840 GTACCCCTGCGTGCATGC 61.509 66.667 24.20 24.20 0.00 4.06
714 757 4.027173 TACCCCTGCGTGCATGCA 62.027 61.111 30.58 30.58 43.95 3.96
715 758 3.342668 TACCCCTGCGTGCATGCAT 62.343 57.895 32.45 20.51 45.26 3.96
716 759 1.977293 TACCCCTGCGTGCATGCATA 61.977 55.000 32.45 19.46 45.26 3.14
717 760 1.900016 CCCCTGCGTGCATGCATAT 60.900 57.895 32.45 0.00 45.26 1.78
718 761 1.284715 CCCTGCGTGCATGCATATG 59.715 57.895 32.45 22.38 45.26 1.78
727 770 4.034258 ATGCATATGCCTGCGCGC 62.034 61.111 27.26 27.26 45.30 6.86
749 792 0.730155 ACGCGTATGTACACCGTGTG 60.730 55.000 25.96 13.97 42.93 3.82
754 797 1.990563 GTATGTACACCGTGTGCAGTC 59.009 52.381 23.93 16.25 45.60 3.51
756 799 1.008194 GTACACCGTGTGCAGTCGA 60.008 57.895 14.66 0.00 36.98 4.20
757 800 0.595567 GTACACCGTGTGCAGTCGAA 60.596 55.000 14.66 0.00 36.98 3.71
760 803 1.069090 ACCGTGTGCAGTCGAATGT 59.931 52.632 15.06 0.00 0.00 2.71
762 805 1.492873 CGTGTGCAGTCGAATGTGG 59.507 57.895 15.06 0.00 0.00 4.17
772 815 1.129251 GTCGAATGTGGTGCATGTGAG 59.871 52.381 0.00 0.00 37.96 3.51
783 826 1.214325 CATGTGAGCCGTACGTCCA 59.786 57.895 15.21 5.97 0.00 4.02
785 828 1.248785 ATGTGAGCCGTACGTCCACT 61.249 55.000 22.94 12.90 0.00 4.00
809 852 1.291877 CTTCACCGAAGCTTCCGTGG 61.292 60.000 33.15 25.08 37.14 4.94
962 1012 1.894466 TGCCATTCCAACATCACAAGG 59.106 47.619 0.00 0.00 0.00 3.61
976 1026 3.074412 TCACAAGGCAAAAGCTAGCTAC 58.926 45.455 19.70 8.02 0.00 3.58
977 1027 2.162408 CACAAGGCAAAAGCTAGCTACC 59.838 50.000 19.70 16.74 0.00 3.18
978 1028 2.040412 ACAAGGCAAAAGCTAGCTACCT 59.960 45.455 19.70 18.69 0.00 3.08
979 1029 3.263425 ACAAGGCAAAAGCTAGCTACCTA 59.737 43.478 19.70 0.00 0.00 3.08
980 1030 3.828875 AGGCAAAAGCTAGCTACCTAG 57.171 47.619 19.70 7.87 43.23 3.02
981 1031 3.375699 AGGCAAAAGCTAGCTACCTAGA 58.624 45.455 19.70 0.00 43.07 2.43
989 1039 3.007182 AGCTAGCTACCTAGACTAGACGG 59.993 52.174 17.69 0.00 43.07 4.79
991 1041 4.021544 GCTAGCTACCTAGACTAGACGGTA 60.022 50.000 11.27 5.17 43.07 4.02
1469 1531 0.973496 GTCCACACCTCCTCCTCCTC 60.973 65.000 0.00 0.00 0.00 3.71
1470 1532 1.687493 CCACACCTCCTCCTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
1471 1533 2.055042 CACACCTCCTCCTCCTCCG 61.055 68.421 0.00 0.00 0.00 4.63
1756 1818 0.241213 CGAGAGCGAGAAGGTGTTCA 59.759 55.000 0.00 0.00 40.82 3.18
1818 1880 3.255642 ACACGCCAACAATTTAGCTTCAT 59.744 39.130 0.00 0.00 0.00 2.57
1821 1883 6.317642 ACACGCCAACAATTTAGCTTCATATA 59.682 34.615 0.00 0.00 0.00 0.86
1822 1884 7.013274 ACACGCCAACAATTTAGCTTCATATAT 59.987 33.333 0.00 0.00 0.00 0.86
1824 1886 7.862372 ACGCCAACAATTTAGCTTCATATATTG 59.138 33.333 0.00 0.00 33.14 1.90
1825 1887 7.148918 CGCCAACAATTTAGCTTCATATATTGC 60.149 37.037 0.00 0.00 31.26 3.56
1944 2009 6.590068 CAGTGATCTCATCTCAGGGTAAAAT 58.410 40.000 0.00 0.00 0.00 1.82
1988 2053 5.264712 CACACACCAATGTTTTGCATTTTC 58.735 37.500 0.00 0.00 44.82 2.29
1991 2056 5.064962 CACACCAATGTTTTGCATTTTCTGT 59.935 36.000 0.00 0.00 44.82 3.41
1996 2061 6.687958 CCAATGTTTTGCATTTTCTGTTTCAC 59.312 34.615 0.00 0.00 44.82 3.18
2001 2066 7.062839 TGTTTTGCATTTTCTGTTTCACAGTAC 59.937 33.333 3.87 0.00 46.03 2.73
2022 2087 9.779237 CAGTACTGAATTATAATTACGAAAGCG 57.221 33.333 18.45 0.00 44.79 4.68
2046 2111 3.495377 TGATGCTTGCAACAAATTTCAGC 59.505 39.130 0.00 0.00 0.00 4.26
2051 2116 2.458951 TGCAACAAATTTCAGCGTCAC 58.541 42.857 0.00 0.00 0.00 3.67
2053 2118 2.797792 GCAACAAATTTCAGCGTCACCA 60.798 45.455 0.00 0.00 0.00 4.17
2070 2136 5.574830 CGTCACCAAATTTCACTTCACAAAA 59.425 36.000 0.00 0.00 0.00 2.44
2081 2147 6.363577 TCACTTCACAAAAGAGATTGACAC 57.636 37.500 0.00 0.00 34.38 3.67
2089 2155 9.119418 TCACAAAAGAGATTGACACAAGATTTA 57.881 29.630 0.00 0.00 34.38 1.40
2095 2161 9.606631 AAGAGATTGACACAAGATTTATACTCC 57.393 33.333 0.00 0.00 0.00 3.85
2096 2162 8.207545 AGAGATTGACACAAGATTTATACTCCC 58.792 37.037 0.00 0.00 0.00 4.30
2097 2163 8.095452 AGATTGACACAAGATTTATACTCCCT 57.905 34.615 0.00 0.00 0.00 4.20
2098 2164 8.207545 AGATTGACACAAGATTTATACTCCCTC 58.792 37.037 0.00 0.00 0.00 4.30
2099 2165 7.496346 TTGACACAAGATTTATACTCCCTCT 57.504 36.000 0.00 0.00 0.00 3.69
2100 2166 8.603898 TTGACACAAGATTTATACTCCCTCTA 57.396 34.615 0.00 0.00 0.00 2.43
2128 2194 7.543947 AGAAATATAAAAGCAGCAATTTGGC 57.456 32.000 0.00 0.00 0.00 4.52
2130 2196 7.493645 AGAAATATAAAAGCAGCAATTTGGCTC 59.506 33.333 0.00 0.00 43.68 4.70
2131 2197 2.174363 AAAAGCAGCAATTTGGCTCC 57.826 45.000 0.00 0.00 43.68 4.70
2132 2198 0.322648 AAAGCAGCAATTTGGCTCCC 59.677 50.000 0.00 0.00 43.68 4.30
2133 2199 1.880819 AAGCAGCAATTTGGCTCCCG 61.881 55.000 0.00 0.00 43.68 5.14
2135 2201 2.362889 AGCAATTTGGCTCCCGGG 60.363 61.111 16.85 16.85 41.05 5.73
2136 2202 4.147449 GCAATTTGGCTCCCGGGC 62.147 66.667 18.49 4.47 41.27 6.13
2137 2203 2.362889 CAATTTGGCTCCCGGGCT 60.363 61.111 18.49 0.00 41.48 5.19
2138 2204 2.043953 AATTTGGCTCCCGGGCTC 60.044 61.111 18.49 9.71 41.48 4.70
2139 2205 2.917897 AATTTGGCTCCCGGGCTCA 61.918 57.895 18.49 11.07 41.48 4.26
2140 2206 2.843912 AATTTGGCTCCCGGGCTCAG 62.844 60.000 18.49 9.90 41.48 3.35
2143 2209 4.247380 GGCTCCCGGGCTCAGATG 62.247 72.222 18.49 0.33 37.53 2.90
2144 2210 3.157252 GCTCCCGGGCTCAGATGA 61.157 66.667 18.49 0.00 0.00 2.92
2145 2211 3.136750 CTCCCGGGCTCAGATGAG 58.863 66.667 18.49 0.25 44.75 2.90
2153 2219 3.473647 CTCAGATGAGCCCGGGCA 61.474 66.667 45.13 28.44 44.88 5.36
2154 2220 2.769621 TCAGATGAGCCCGGGCAT 60.770 61.111 45.13 31.90 44.88 4.40
2155 2221 2.593725 CAGATGAGCCCGGGCATG 60.594 66.667 45.13 29.32 44.88 4.06
2156 2222 2.769621 AGATGAGCCCGGGCATGA 60.770 61.111 45.13 28.90 44.88 3.07
2157 2223 2.192979 GATGAGCCCGGGCATGAA 59.807 61.111 45.13 27.69 44.88 2.57
2158 2224 2.124151 ATGAGCCCGGGCATGAAC 60.124 61.111 45.13 28.55 44.88 3.18
2159 2225 2.891941 GATGAGCCCGGGCATGAACA 62.892 60.000 45.13 32.49 44.88 3.18
2160 2226 2.825836 GAGCCCGGGCATGAACAG 60.826 66.667 45.13 6.17 44.88 3.16
2161 2227 3.628646 GAGCCCGGGCATGAACAGT 62.629 63.158 45.13 24.25 44.88 3.55
2162 2228 2.252072 GAGCCCGGGCATGAACAGTA 62.252 60.000 45.13 0.00 44.88 2.74
2164 2230 0.963355 GCCCGGGCATGAACAGTAAA 60.963 55.000 40.73 0.00 41.49 2.01
2165 2231 1.540267 CCCGGGCATGAACAGTAAAA 58.460 50.000 8.08 0.00 0.00 1.52
2166 2232 1.889829 CCCGGGCATGAACAGTAAAAA 59.110 47.619 8.08 0.00 0.00 1.94
2212 3704 8.746922 TTTTGTAGTGAAAGATGATTGAATGC 57.253 30.769 0.00 0.00 0.00 3.56
2213 3705 7.451501 TTGTAGTGAAAGATGATTGAATGCA 57.548 32.000 0.00 0.00 0.00 3.96
2214 3706 7.634671 TGTAGTGAAAGATGATTGAATGCAT 57.365 32.000 0.00 0.00 0.00 3.96
2215 3707 7.477494 TGTAGTGAAAGATGATTGAATGCATG 58.523 34.615 0.00 0.00 0.00 4.06
2216 3708 6.769134 AGTGAAAGATGATTGAATGCATGA 57.231 33.333 0.00 0.00 0.00 3.07
2217 3709 7.348080 AGTGAAAGATGATTGAATGCATGAT 57.652 32.000 0.00 0.00 0.00 2.45
2218 3710 7.203218 AGTGAAAGATGATTGAATGCATGATG 58.797 34.615 0.00 0.00 0.00 3.07
2221 3713 7.704899 TGAAAGATGATTGAATGCATGATGTTC 59.295 33.333 0.00 0.00 0.00 3.18
2222 3714 5.758924 AGATGATTGAATGCATGATGTTCG 58.241 37.500 0.00 0.00 0.00 3.95
2223 3715 4.968812 TGATTGAATGCATGATGTTCGT 57.031 36.364 0.00 0.00 0.00 3.85
2224 3716 4.664188 TGATTGAATGCATGATGTTCGTG 58.336 39.130 0.00 0.00 36.50 4.35
2233 3725 4.571375 CATGATGTTCGTGCCAAAATTG 57.429 40.909 0.00 0.00 0.00 2.32
2234 3726 3.998099 TGATGTTCGTGCCAAAATTGA 57.002 38.095 0.00 0.00 0.00 2.57
2235 3727 3.899734 TGATGTTCGTGCCAAAATTGAG 58.100 40.909 0.00 0.00 0.00 3.02
2236 3728 3.567585 TGATGTTCGTGCCAAAATTGAGA 59.432 39.130 0.00 0.00 0.00 3.27
2238 3730 3.701241 TGTTCGTGCCAAAATTGAGAAC 58.299 40.909 12.36 12.36 37.56 3.01
2239 3731 3.129462 TGTTCGTGCCAAAATTGAGAACA 59.871 39.130 15.37 15.37 42.47 3.18
2242 3734 4.942852 TCGTGCCAAAATTGAGAACATTT 58.057 34.783 0.00 0.00 0.00 2.32
2251 3743 8.014322 CAAAATTGAGAACATTTGGACATCTG 57.986 34.615 0.00 0.00 0.00 2.90
2253 3745 6.754702 ATTGAGAACATTTGGACATCTGAG 57.245 37.500 0.00 0.00 0.00 3.35
2254 3746 5.488262 TGAGAACATTTGGACATCTGAGA 57.512 39.130 0.00 0.00 0.00 3.27
2255 3747 5.868454 TGAGAACATTTGGACATCTGAGAA 58.132 37.500 0.00 0.00 0.00 2.87
2256 3748 5.936372 TGAGAACATTTGGACATCTGAGAAG 59.064 40.000 0.00 0.00 0.00 2.85
2257 3749 4.699257 AGAACATTTGGACATCTGAGAAGC 59.301 41.667 0.00 0.00 0.00 3.86
2258 3750 3.350833 ACATTTGGACATCTGAGAAGCC 58.649 45.455 0.00 0.00 0.00 4.35
2259 3751 2.496899 TTTGGACATCTGAGAAGCCC 57.503 50.000 0.00 0.00 0.00 5.19
2260 3752 1.661463 TTGGACATCTGAGAAGCCCT 58.339 50.000 0.00 0.00 0.00 5.19
2287 3779 5.692115 AAAAAGACAAAATTGGGGTCTGT 57.308 34.783 7.45 0.83 40.80 3.41
2288 3780 6.800072 AAAAAGACAAAATTGGGGTCTGTA 57.200 33.333 7.45 0.00 40.80 2.74
2290 3782 6.800072 AAAGACAAAATTGGGGTCTGTAAA 57.200 33.333 7.45 0.00 40.80 2.01
2291 3783 6.800072 AAGACAAAATTGGGGTCTGTAAAA 57.200 33.333 7.45 0.00 40.80 1.52
2322 3814 9.616156 TTACTGTTTTGTACAATTTAGACCTGA 57.384 29.630 9.56 0.00 36.02 3.86
2347 3839 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
2349 3841 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
2353 3845 1.022982 TGCCGAGAGCTGCTCAAATG 61.023 55.000 29.49 16.14 44.15 2.32
2356 3848 1.712977 CGAGAGCTGCTCAAATGCCC 61.713 60.000 29.49 9.58 44.15 5.36
2357 3849 0.679002 GAGAGCTGCTCAAATGCCCA 60.679 55.000 29.49 0.00 43.38 5.36
2358 3850 0.251474 AGAGCTGCTCAAATGCCCAA 60.251 50.000 29.49 0.00 32.06 4.12
2359 3851 0.604578 GAGCTGCTCAAATGCCCAAA 59.395 50.000 24.02 0.00 0.00 3.28
2360 3852 1.206371 GAGCTGCTCAAATGCCCAAAT 59.794 47.619 24.02 0.00 0.00 2.32
2361 3853 1.066430 AGCTGCTCAAATGCCCAAATG 60.066 47.619 0.00 0.00 0.00 2.32
2362 3854 1.365699 CTGCTCAAATGCCCAAATGC 58.634 50.000 0.00 0.00 0.00 3.56
2364 3856 1.066716 TGCTCAAATGCCCAAATGCTC 60.067 47.619 0.00 0.00 0.00 4.26
2366 3858 2.888594 CTCAAATGCCCAAATGCTCTG 58.111 47.619 0.00 0.00 0.00 3.35
2367 3859 1.551430 TCAAATGCCCAAATGCTCTGG 59.449 47.619 0.00 0.00 0.00 3.86
2369 3861 1.941377 AATGCCCAAATGCTCTGGAA 58.059 45.000 1.37 0.00 35.85 3.53
2370 3862 2.170012 ATGCCCAAATGCTCTGGAAT 57.830 45.000 1.37 0.00 35.85 3.01
2372 3864 2.259012 TGCCCAAATGCTCTGGAATTT 58.741 42.857 1.37 0.00 35.85 1.82
2373 3865 2.027929 TGCCCAAATGCTCTGGAATTTG 60.028 45.455 3.23 3.23 44.24 2.32
2376 3868 3.322211 CAAATGCTCTGGAATTTGGCA 57.678 42.857 2.44 0.00 42.12 4.92
2377 3869 2.997986 CAAATGCTCTGGAATTTGGCAC 59.002 45.455 0.00 0.00 42.12 5.01
2378 3870 1.188863 ATGCTCTGGAATTTGGCACC 58.811 50.000 0.00 0.00 35.72 5.01
2380 3872 0.968405 GCTCTGGAATTTGGCACCAA 59.032 50.000 0.00 0.00 33.14 3.67
2381 3873 1.337167 GCTCTGGAATTTGGCACCAAC 60.337 52.381 0.45 0.00 35.46 3.77
2382 3874 1.962807 CTCTGGAATTTGGCACCAACA 59.037 47.619 0.45 0.00 35.46 3.33
2383 3875 2.564062 CTCTGGAATTTGGCACCAACAT 59.436 45.455 0.45 0.00 35.46 2.71
2384 3876 2.562298 TCTGGAATTTGGCACCAACATC 59.438 45.455 0.45 3.56 35.46 3.06
2386 3878 2.036992 TGGAATTTGGCACCAACATCAC 59.963 45.455 0.45 0.00 35.46 3.06
2387 3879 2.327568 GAATTTGGCACCAACATCACG 58.672 47.619 0.45 0.00 35.46 4.35
2388 3880 0.038343 ATTTGGCACCAACATCACGC 60.038 50.000 0.45 0.00 35.46 5.34
2389 3881 1.387295 TTTGGCACCAACATCACGCA 61.387 50.000 0.45 0.00 35.46 5.24
2390 3882 2.069465 TTGGCACCAACATCACGCAC 62.069 55.000 0.00 0.00 0.00 5.34
2391 3883 2.260869 GGCACCAACATCACGCACT 61.261 57.895 0.00 0.00 0.00 4.40
2392 3884 1.207593 GCACCAACATCACGCACTC 59.792 57.895 0.00 0.00 0.00 3.51
2393 3885 1.506309 GCACCAACATCACGCACTCA 61.506 55.000 0.00 0.00 0.00 3.41
2394 3886 1.159285 CACCAACATCACGCACTCAT 58.841 50.000 0.00 0.00 0.00 2.90
2395 3887 1.135888 CACCAACATCACGCACTCATG 60.136 52.381 0.00 0.00 0.00 3.07
2409 3901 4.282950 CACTCATGCATATTCACCACAC 57.717 45.455 0.00 0.00 0.00 3.82
2411 3903 3.691118 ACTCATGCATATTCACCACACAC 59.309 43.478 0.00 0.00 0.00 3.82
2414 3906 4.522022 TCATGCATATTCACCACACACAAA 59.478 37.500 0.00 0.00 0.00 2.83
2417 3909 5.851720 TGCATATTCACCACACACAAAAAT 58.148 33.333 0.00 0.00 0.00 1.82
2420 3912 6.453943 CATATTCACCACACACAAAAATGGA 58.546 36.000 0.00 0.00 36.04 3.41
2421 3913 4.808414 TTCACCACACACAAAAATGGAA 57.192 36.364 0.00 0.00 36.04 3.53
2422 3914 4.116747 TCACCACACACAAAAATGGAAC 57.883 40.909 0.00 0.00 36.04 3.62
2423 3915 3.766591 TCACCACACACAAAAATGGAACT 59.233 39.130 0.00 0.00 36.04 3.01
2424 3916 4.221703 TCACCACACACAAAAATGGAACTT 59.778 37.500 0.00 0.00 36.04 2.66
2425 3917 4.934602 CACCACACACAAAAATGGAACTTT 59.065 37.500 0.00 0.00 36.04 2.66
2426 3918 5.411053 CACCACACACAAAAATGGAACTTTT 59.589 36.000 0.00 0.00 36.04 2.27
2427 3919 6.000840 ACCACACACAAAAATGGAACTTTTT 58.999 32.000 0.00 0.00 38.51 1.94
2452 3944 8.798748 TTCGTTTTTCTTGTTTTTACTGTTCA 57.201 26.923 0.00 0.00 0.00 3.18
2453 3945 8.218256 TCGTTTTTCTTGTTTTTACTGTTCAC 57.782 30.769 0.00 0.00 0.00 3.18
2454 3946 7.326547 TCGTTTTTCTTGTTTTTACTGTTCACC 59.673 33.333 0.00 0.00 0.00 4.02
2455 3947 7.441864 GTTTTTCTTGTTTTTACTGTTCACCG 58.558 34.615 0.00 0.00 0.00 4.94
2456 3948 4.886247 TCTTGTTTTTACTGTTCACCGG 57.114 40.909 0.00 0.00 0.00 5.28
2457 3949 3.628487 TCTTGTTTTTACTGTTCACCGGG 59.372 43.478 6.32 0.00 0.00 5.73
2458 3950 3.002038 TGTTTTTACTGTTCACCGGGT 57.998 42.857 6.32 0.00 0.00 5.28
2459 3951 2.683867 TGTTTTTACTGTTCACCGGGTG 59.316 45.455 21.27 21.27 34.45 4.61
2460 3952 1.310904 TTTTACTGTTCACCGGGTGC 58.689 50.000 22.42 9.95 32.98 5.01
2461 3953 0.180642 TTTACTGTTCACCGGGTGCA 59.819 50.000 22.42 14.04 32.98 4.57
2462 3954 0.398696 TTACTGTTCACCGGGTGCAT 59.601 50.000 22.42 7.82 32.98 3.96
2463 3955 0.036765 TACTGTTCACCGGGTGCATC 60.037 55.000 22.42 14.18 32.98 3.91
2464 3956 1.003355 CTGTTCACCGGGTGCATCT 60.003 57.895 22.42 0.00 32.98 2.90
2465 3957 1.300971 CTGTTCACCGGGTGCATCTG 61.301 60.000 22.42 13.50 32.98 2.90
2466 3958 1.003839 GTTCACCGGGTGCATCTGA 60.004 57.895 22.42 0.66 32.98 3.27
2467 3959 1.021390 GTTCACCGGGTGCATCTGAG 61.021 60.000 22.42 0.00 32.98 3.35
2468 3960 2.803155 TTCACCGGGTGCATCTGAGC 62.803 60.000 22.42 0.00 32.98 4.26
2469 3961 3.005539 ACCGGGTGCATCTGAGCT 61.006 61.111 7.58 0.00 34.99 4.09
2470 3962 2.202987 CCGGGTGCATCTGAGCTC 60.203 66.667 7.58 6.82 34.99 4.09
2471 3963 2.584418 CGGGTGCATCTGAGCTCG 60.584 66.667 9.64 4.19 34.99 5.03
2472 3964 2.202987 GGGTGCATCTGAGCTCGG 60.203 66.667 16.98 16.98 34.99 4.63
2473 3965 2.581354 GGTGCATCTGAGCTCGGT 59.419 61.111 21.88 7.10 34.99 4.69
2474 3966 1.078848 GGTGCATCTGAGCTCGGTT 60.079 57.895 21.88 11.42 34.99 4.44
2475 3967 0.674895 GGTGCATCTGAGCTCGGTTT 60.675 55.000 21.88 8.55 34.99 3.27
2476 3968 1.160137 GTGCATCTGAGCTCGGTTTT 58.840 50.000 21.88 6.06 34.99 2.43
2477 3969 1.129437 GTGCATCTGAGCTCGGTTTTC 59.871 52.381 21.88 10.38 34.99 2.29
2478 3970 0.371645 GCATCTGAGCTCGGTTTTCG 59.628 55.000 21.88 8.42 40.90 3.46
2479 3971 1.002366 CATCTGAGCTCGGTTTTCGG 58.998 55.000 21.88 3.43 39.77 4.30
2480 3972 0.895530 ATCTGAGCTCGGTTTTCGGA 59.104 50.000 21.88 1.48 39.77 4.55
2481 3973 0.677288 TCTGAGCTCGGTTTTCGGAA 59.323 50.000 21.88 0.00 39.77 4.30
2482 3974 1.275291 TCTGAGCTCGGTTTTCGGAAT 59.725 47.619 21.88 0.00 39.77 3.01
2483 3975 1.394917 CTGAGCTCGGTTTTCGGAATG 59.605 52.381 14.84 0.00 39.77 2.67
2484 3976 0.097150 GAGCTCGGTTTTCGGAATGC 59.903 55.000 0.00 0.00 39.77 3.56
2485 3977 0.605319 AGCTCGGTTTTCGGAATGCA 60.605 50.000 0.00 0.00 39.77 3.96
2486 3978 0.451783 GCTCGGTTTTCGGAATGCAT 59.548 50.000 0.00 0.00 39.77 3.96
2487 3979 1.668751 GCTCGGTTTTCGGAATGCATA 59.331 47.619 0.00 0.00 39.77 3.14
2488 3980 2.096819 GCTCGGTTTTCGGAATGCATAA 59.903 45.455 0.00 0.00 39.77 1.90
2489 3981 3.426963 GCTCGGTTTTCGGAATGCATAAA 60.427 43.478 0.00 0.00 39.77 1.40
2490 3982 4.342772 CTCGGTTTTCGGAATGCATAAAG 58.657 43.478 0.00 0.00 39.77 1.85
2491 3983 4.004314 TCGGTTTTCGGAATGCATAAAGA 58.996 39.130 0.00 0.00 39.77 2.52
2492 3984 4.094294 TCGGTTTTCGGAATGCATAAAGAG 59.906 41.667 0.00 0.00 39.77 2.85
2493 3985 4.142687 CGGTTTTCGGAATGCATAAAGAGT 60.143 41.667 0.00 0.00 34.75 3.24
2530 4022 5.316158 ACCATTTTAGAGCTGCTCCATAT 57.684 39.130 25.09 10.03 0.00 1.78
2532 4024 6.471146 ACCATTTTAGAGCTGCTCCATATAG 58.529 40.000 25.09 11.95 0.00 1.31
2533 4025 6.043706 ACCATTTTAGAGCTGCTCCATATAGT 59.956 38.462 25.09 12.44 0.00 2.12
2536 4028 6.731292 TTTAGAGCTGCTCCATATAGTTCA 57.269 37.500 25.09 0.00 0.00 3.18
2538 4030 5.404466 AGAGCTGCTCCATATAGTTCATC 57.596 43.478 25.09 0.00 0.00 2.92
2542 4034 6.599445 AGCTGCTCCATATAGTTCATCTTTT 58.401 36.000 0.00 0.00 0.00 2.27
2595 4099 9.567917 CGACAAATTATGAAACATATAGACACG 57.432 33.333 0.00 0.00 0.00 4.49
2604 4108 8.587952 TGAAACATATAGACACGTTCATATGG 57.412 34.615 2.13 0.00 36.23 2.74
2609 4113 9.020731 ACATATAGACACGTTCATATGGATGTA 57.979 33.333 8.60 0.00 36.23 2.29
2694 4198 9.877137 AGAAAAATTCATGATTTTAAAAACGGC 57.123 25.926 14.25 0.00 44.98 5.68
2703 4207 5.181622 TGATTTTAAAAACGGCGACCAGTAT 59.818 36.000 16.62 0.00 0.00 2.12
2707 4211 0.392461 AAACGGCGACCAGTATGCAT 60.392 50.000 16.62 3.79 31.97 3.96
2723 4227 6.703165 CAGTATGCATCTGCTGTTCACTATTA 59.297 38.462 0.19 0.00 42.66 0.98
2760 4264 9.643652 GAATTTATCTTTCATTTCTAGCTCACG 57.356 33.333 0.00 0.00 0.00 4.35
2761 4265 8.723942 ATTTATCTTTCATTTCTAGCTCACGT 57.276 30.769 0.00 0.00 0.00 4.49
2762 4266 7.525688 TTATCTTTCATTTCTAGCTCACGTG 57.474 36.000 9.94 9.94 0.00 4.49
2763 4267 4.883083 TCTTTCATTTCTAGCTCACGTGT 58.117 39.130 16.51 0.00 0.00 4.49
2764 4268 4.923871 TCTTTCATTTCTAGCTCACGTGTC 59.076 41.667 16.51 8.88 0.00 3.67
2765 4269 4.521130 TTCATTTCTAGCTCACGTGTCT 57.479 40.909 16.51 15.66 0.00 3.41
2766 4270 3.838120 TCATTTCTAGCTCACGTGTCTG 58.162 45.455 16.51 8.39 0.00 3.51
2767 4271 3.506067 TCATTTCTAGCTCACGTGTCTGA 59.494 43.478 16.51 10.78 0.00 3.27
2768 4272 4.158579 TCATTTCTAGCTCACGTGTCTGAT 59.841 41.667 16.51 8.54 0.00 2.90
2769 4273 3.494045 TTCTAGCTCACGTGTCTGATG 57.506 47.619 16.51 8.89 0.00 3.07
2770 4274 1.745653 TCTAGCTCACGTGTCTGATGG 59.254 52.381 16.51 8.16 0.00 3.51
2771 4275 1.745653 CTAGCTCACGTGTCTGATGGA 59.254 52.381 16.51 0.00 0.00 3.41
2772 4276 0.969149 AGCTCACGTGTCTGATGGAA 59.031 50.000 16.51 0.00 0.00 3.53
2773 4277 1.344438 AGCTCACGTGTCTGATGGAAA 59.656 47.619 16.51 0.00 0.00 3.13
2774 4278 2.027745 AGCTCACGTGTCTGATGGAAAT 60.028 45.455 16.51 0.00 0.00 2.17
2775 4279 3.195610 AGCTCACGTGTCTGATGGAAATA 59.804 43.478 16.51 0.00 0.00 1.40
2776 4280 4.122776 GCTCACGTGTCTGATGGAAATAT 58.877 43.478 16.51 0.00 0.00 1.28
2777 4281 4.025396 GCTCACGTGTCTGATGGAAATATG 60.025 45.833 16.51 0.00 0.00 1.78
2778 4282 3.871006 TCACGTGTCTGATGGAAATATGC 59.129 43.478 16.51 0.00 0.00 3.14
2779 4283 3.002656 CACGTGTCTGATGGAAATATGCC 59.997 47.826 7.58 0.00 0.00 4.40
2780 4284 3.118261 ACGTGTCTGATGGAAATATGCCT 60.118 43.478 0.00 0.00 0.00 4.75
2781 4285 3.879295 CGTGTCTGATGGAAATATGCCTT 59.121 43.478 0.00 0.00 0.00 4.35
2782 4286 5.056480 CGTGTCTGATGGAAATATGCCTTA 58.944 41.667 0.00 0.00 0.00 2.69
2783 4287 5.178252 CGTGTCTGATGGAAATATGCCTTAG 59.822 44.000 0.00 0.00 0.00 2.18
2784 4288 6.291377 GTGTCTGATGGAAATATGCCTTAGA 58.709 40.000 0.00 0.00 0.00 2.10
2785 4289 6.426328 GTGTCTGATGGAAATATGCCTTAGAG 59.574 42.308 0.00 0.00 0.00 2.43
2786 4290 6.327365 TGTCTGATGGAAATATGCCTTAGAGA 59.673 38.462 0.00 0.00 0.00 3.10
2787 4291 6.648725 GTCTGATGGAAATATGCCTTAGAGAC 59.351 42.308 0.00 0.00 0.00 3.36
2788 4292 6.327365 TCTGATGGAAATATGCCTTAGAGACA 59.673 38.462 0.00 0.00 0.00 3.41
2789 4293 6.899089 TGATGGAAATATGCCTTAGAGACAA 58.101 36.000 0.00 0.00 0.00 3.18
2790 4294 7.520798 TGATGGAAATATGCCTTAGAGACAAT 58.479 34.615 0.00 0.00 0.00 2.71
2791 4295 8.659527 TGATGGAAATATGCCTTAGAGACAATA 58.340 33.333 0.00 0.00 0.00 1.90
2792 4296 9.507329 GATGGAAATATGCCTTAGAGACAATAA 57.493 33.333 0.00 0.00 0.00 1.40
2801 4305 9.686683 ATGCCTTAGAGACAATAATAAAGTTGT 57.313 29.630 0.00 0.00 40.97 3.32
2802 4306 9.515226 TGCCTTAGAGACAATAATAAAGTTGTT 57.485 29.630 0.00 0.00 38.57 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.708421 AGTTGCCATTGATTAACTGAGCAT 59.292 37.500 0.00 0.00 32.56 3.79
66 69 1.573829 CCGTGACAACCCAACCGATG 61.574 60.000 0.00 0.00 0.00 3.84
89 92 2.329244 TGCGCAAGTGCAAATCTCA 58.671 47.368 8.16 0.00 43.02 3.27
137 140 2.009108 CAATGTCCACGGCGATGAG 58.991 57.895 16.62 0.00 0.00 2.90
138 141 2.106074 GCAATGTCCACGGCGATGA 61.106 57.895 16.62 6.44 0.00 2.92
214 217 3.999663 CCTTCTTTGTCTGATCCACACTC 59.000 47.826 0.00 0.00 0.00 3.51
225 228 0.106708 TCGCTGTGCCTTCTTTGTCT 59.893 50.000 0.00 0.00 0.00 3.41
231 234 0.900647 ACCTACTCGCTGTGCCTTCT 60.901 55.000 0.00 0.00 0.00 2.85
232 235 0.458716 GACCTACTCGCTGTGCCTTC 60.459 60.000 0.00 0.00 0.00 3.46
236 239 1.807573 GCTGACCTACTCGCTGTGC 60.808 63.158 0.00 0.00 0.00 4.57
340 343 6.708285 ACCCTTAACCTATAATAATCGGCAG 58.292 40.000 0.00 0.00 0.00 4.85
447 450 1.519455 CAACGTCGGAGGAGATGCC 60.519 63.158 4.48 0.00 0.00 4.40
487 490 0.106469 TGAGGTGAGATCGAGAGGGG 60.106 60.000 0.00 0.00 0.00 4.79
502 522 0.594540 CGCGAGCTGAGAATCTGAGG 60.595 60.000 0.00 0.00 35.94 3.86
520 540 1.371022 CGCACGATCCAGATCTCCG 60.371 63.158 6.12 0.00 35.72 4.63
560 581 2.116772 CGGGGGCCGTCCTATCTA 59.883 66.667 11.35 0.00 42.73 1.98
639 682 1.743623 CGCCGGTGCTACAATGGAA 60.744 57.895 0.00 0.00 34.43 3.53
641 684 1.523711 ATCGCCGGTGCTACAATGG 60.524 57.895 11.05 0.00 34.43 3.16
650 693 2.514592 AATGGAGCATCGCCGGTG 60.515 61.111 9.28 9.28 34.37 4.94
651 694 1.966901 TACAATGGAGCATCGCCGGT 61.967 55.000 1.90 0.00 34.37 5.28
652 695 1.224069 CTACAATGGAGCATCGCCGG 61.224 60.000 0.00 0.00 34.37 6.13
653 696 1.835483 GCTACAATGGAGCATCGCCG 61.835 60.000 13.46 0.00 39.84 6.46
654 697 0.815213 TGCTACAATGGAGCATCGCC 60.815 55.000 17.45 0.00 44.89 5.54
660 703 0.815213 TGCGGATGCTACAATGGAGC 60.815 55.000 11.21 11.21 43.34 4.70
662 705 0.809636 CGTGCGGATGCTACAATGGA 60.810 55.000 0.00 0.00 43.34 3.41
663 706 1.089481 ACGTGCGGATGCTACAATGG 61.089 55.000 0.00 0.00 43.34 3.16
664 707 0.026674 CACGTGCGGATGCTACAATG 59.973 55.000 0.82 0.00 43.34 2.82
665 708 1.089481 CCACGTGCGGATGCTACAAT 61.089 55.000 10.91 0.00 43.34 2.71
666 709 1.739929 CCACGTGCGGATGCTACAA 60.740 57.895 10.91 0.00 43.34 2.41
667 710 2.125713 CCACGTGCGGATGCTACA 60.126 61.111 10.91 0.00 43.34 2.74
670 713 4.457496 CCTCCACGTGCGGATGCT 62.457 66.667 10.91 0.00 43.34 3.79
688 731 2.106332 GCAGGGGTACACGATCGG 59.894 66.667 20.98 10.92 0.00 4.18
689 732 2.278596 CGCAGGGGTACACGATCG 60.279 66.667 14.88 14.88 0.00 3.69
690 733 1.518572 CACGCAGGGGTACACGATC 60.519 63.158 0.00 0.00 0.00 3.69
691 734 2.577059 CACGCAGGGGTACACGAT 59.423 61.111 0.00 0.00 0.00 3.73
692 735 4.367023 GCACGCAGGGGTACACGA 62.367 66.667 0.00 0.00 0.00 4.35
693 736 3.950794 ATGCACGCAGGGGTACACG 62.951 63.158 0.00 0.00 0.00 4.49
694 737 2.046314 ATGCACGCAGGGGTACAC 60.046 61.111 0.00 0.00 0.00 2.90
695 738 2.046411 CATGCACGCAGGGGTACA 60.046 61.111 0.00 0.00 0.00 2.90
696 739 3.508840 GCATGCACGCAGGGGTAC 61.509 66.667 14.21 0.00 0.00 3.34
697 740 1.977293 TATGCATGCACGCAGGGGTA 61.977 55.000 25.37 5.85 46.99 3.69
698 741 2.629424 ATATGCATGCACGCAGGGGT 62.629 55.000 25.37 7.00 46.99 4.95
699 742 1.900016 ATATGCATGCACGCAGGGG 60.900 57.895 25.37 0.00 46.99 4.79
700 743 1.284715 CATATGCATGCACGCAGGG 59.715 57.895 25.37 5.88 46.99 4.45
701 744 4.935630 CATATGCATGCACGCAGG 57.064 55.556 25.37 9.32 46.99 4.85
710 753 4.034258 GCGCGCAGGCATATGCAT 62.034 61.111 29.10 19.95 46.87 3.96
727 770 2.841533 CGGTGTACATACGCGTGCG 61.842 63.158 24.59 15.27 46.03 5.34
749 792 0.179181 CATGCACCACATTCGACTGC 60.179 55.000 2.19 0.00 36.64 4.40
754 797 0.179181 GCTCACATGCACCACATTCG 60.179 55.000 0.00 0.00 36.64 3.34
756 799 1.588824 CGGCTCACATGCACCACATT 61.589 55.000 0.00 0.00 36.64 2.71
757 800 2.042259 CGGCTCACATGCACCACAT 61.042 57.895 0.00 0.00 40.66 3.21
760 803 1.375396 GTACGGCTCACATGCACCA 60.375 57.895 0.00 0.00 34.04 4.17
762 805 1.683790 GACGTACGGCTCACATGCAC 61.684 60.000 21.06 0.00 34.04 4.57
772 815 0.172803 AGATGAAGTGGACGTACGGC 59.827 55.000 21.06 17.96 0.00 5.68
783 826 3.330267 GAAGCTTCGGTGAAGATGAAGT 58.670 45.455 11.40 0.00 41.71 3.01
785 828 2.699954 GGAAGCTTCGGTGAAGATGAA 58.300 47.619 19.91 0.00 41.71 2.57
976 1026 3.740321 GTCGATGTACCGTCTAGTCTAGG 59.260 52.174 7.05 0.00 0.00 3.02
977 1027 4.366586 TGTCGATGTACCGTCTAGTCTAG 58.633 47.826 0.00 0.00 0.00 2.43
978 1028 4.391405 TGTCGATGTACCGTCTAGTCTA 57.609 45.455 0.00 0.00 0.00 2.59
979 1029 3.257469 TGTCGATGTACCGTCTAGTCT 57.743 47.619 0.00 0.00 0.00 3.24
980 1030 4.280461 CATTGTCGATGTACCGTCTAGTC 58.720 47.826 0.00 0.00 0.00 2.59
981 1031 3.066342 CCATTGTCGATGTACCGTCTAGT 59.934 47.826 0.00 0.00 33.71 2.57
989 1039 1.641677 GGCGCCATTGTCGATGTAC 59.358 57.895 24.80 0.00 33.71 2.90
991 1041 3.195002 CGGCGCCATTGTCGATGT 61.195 61.111 28.98 0.00 33.71 3.06
1702 1764 2.267324 GCACTCCTCCAGCTCCAC 59.733 66.667 0.00 0.00 0.00 4.02
1821 1883 8.474831 TCTTGTGTGTGTATACTGTATAGCAAT 58.525 33.333 7.75 0.00 0.00 3.56
1822 1884 7.832769 TCTTGTGTGTGTATACTGTATAGCAA 58.167 34.615 7.75 6.35 0.00 3.91
1824 1886 8.873215 AATCTTGTGTGTGTATACTGTATAGC 57.127 34.615 7.75 5.36 0.00 2.97
1897 1962 4.755411 CACGGCAGGAGACTTAATTAAGA 58.245 43.478 27.92 0.00 40.21 2.10
1944 2009 7.067981 TGTGTGCCAAATATATTGCAGTAATCA 59.932 33.333 9.97 3.38 33.80 2.57
1996 2061 9.779237 CGCTTTCGTAATTATAATTCAGTACTG 57.221 33.333 17.17 17.17 0.00 2.74
2022 2087 5.406767 TGAAATTTGTTGCAAGCATCAAC 57.593 34.783 15.78 3.62 42.91 3.18
2034 2099 3.791973 TTGGTGACGCTGAAATTTGTT 57.208 38.095 0.00 0.00 0.00 2.83
2046 2111 4.285807 TGTGAAGTGAAATTTGGTGACG 57.714 40.909 0.00 0.00 0.00 4.35
2051 2116 8.545420 CAATCTCTTTTGTGAAGTGAAATTTGG 58.455 33.333 0.00 0.00 0.00 3.28
2053 2118 9.305925 GTCAATCTCTTTTGTGAAGTGAAATTT 57.694 29.630 0.00 0.00 0.00 1.82
2070 2136 8.207545 GGGAGTATAAATCTTGTGTCAATCTCT 58.792 37.037 0.00 0.00 0.00 3.10
2103 2169 7.825761 AGCCAAATTGCTGCTTTTATATTTCTT 59.174 29.630 0.00 0.00 40.90 2.52
2104 2170 7.333323 AGCCAAATTGCTGCTTTTATATTTCT 58.667 30.769 0.00 0.00 40.90 2.52
2105 2171 7.254556 GGAGCCAAATTGCTGCTTTTATATTTC 60.255 37.037 0.00 0.00 45.22 2.17
2106 2172 6.539826 GGAGCCAAATTGCTGCTTTTATATTT 59.460 34.615 0.00 0.00 45.22 1.40
2107 2173 6.051074 GGAGCCAAATTGCTGCTTTTATATT 58.949 36.000 0.00 0.00 45.22 1.28
2109 2175 5.009854 GGAGCCAAATTGCTGCTTTTATA 57.990 39.130 0.00 0.00 45.22 0.98
2111 2177 3.317603 GGAGCCAAATTGCTGCTTTTA 57.682 42.857 0.00 0.00 45.22 1.52
2112 2178 2.174363 GGAGCCAAATTGCTGCTTTT 57.826 45.000 0.00 0.00 45.22 2.27
2117 2183 2.713967 CCCGGGAGCCAAATTGCTG 61.714 63.158 18.48 0.00 42.95 4.41
2118 2184 2.362889 CCCGGGAGCCAAATTGCT 60.363 61.111 18.48 0.00 46.37 3.91
2120 2186 2.362889 AGCCCGGGAGCCAAATTG 60.363 61.111 29.31 0.00 0.00 2.32
2121 2187 2.043953 GAGCCCGGGAGCCAAATT 60.044 61.111 29.31 0.00 0.00 1.82
2122 2188 3.338250 TGAGCCCGGGAGCCAAAT 61.338 61.111 29.31 0.00 0.00 2.32
2125 2191 4.804420 ATCTGAGCCCGGGAGCCA 62.804 66.667 29.31 17.08 0.00 4.75
2127 2193 3.157252 TCATCTGAGCCCGGGAGC 61.157 66.667 29.31 16.09 0.00 4.70
2128 2194 3.136750 CTCATCTGAGCCCGGGAG 58.863 66.667 29.31 13.93 35.13 4.30
2136 2202 2.815945 ATGCCCGGGCTCATCTGAG 61.816 63.158 43.34 4.66 44.75 3.35
2137 2203 2.769621 ATGCCCGGGCTCATCTGA 60.770 61.111 43.34 24.35 42.51 3.27
2138 2204 2.593725 CATGCCCGGGCTCATCTG 60.594 66.667 43.34 27.32 42.51 2.90
2139 2205 2.377810 TTCATGCCCGGGCTCATCT 61.378 57.895 43.34 21.28 42.51 2.90
2140 2206 2.189499 GTTCATGCCCGGGCTCATC 61.189 63.158 43.34 25.69 42.51 2.92
2141 2207 2.124151 GTTCATGCCCGGGCTCAT 60.124 61.111 43.34 28.62 42.51 2.90
2143 2209 2.252072 TACTGTTCATGCCCGGGCTC 62.252 60.000 43.34 26.98 42.51 4.70
2144 2210 1.847798 TTACTGTTCATGCCCGGGCT 61.848 55.000 43.34 27.34 42.51 5.19
2145 2211 0.963355 TTTACTGTTCATGCCCGGGC 60.963 55.000 39.40 39.40 42.35 6.13
2187 3679 8.358895 TGCATTCAATCATCTTTCACTACAAAA 58.641 29.630 0.00 0.00 0.00 2.44
2193 3685 6.769134 TCATGCATTCAATCATCTTTCACT 57.231 33.333 0.00 0.00 0.00 3.41
2194 3686 6.978659 ACATCATGCATTCAATCATCTTTCAC 59.021 34.615 0.00 0.00 0.00 3.18
2197 3689 6.695713 CGAACATCATGCATTCAATCATCTTT 59.304 34.615 0.00 0.00 0.00 2.52
2198 3690 6.183360 ACGAACATCATGCATTCAATCATCTT 60.183 34.615 0.00 0.00 0.00 2.40
2199 3691 5.298527 ACGAACATCATGCATTCAATCATCT 59.701 36.000 0.00 0.00 0.00 2.90
2200 3692 5.398416 CACGAACATCATGCATTCAATCATC 59.602 40.000 0.00 0.00 0.00 2.92
2201 3693 5.278604 CACGAACATCATGCATTCAATCAT 58.721 37.500 0.00 0.00 0.00 2.45
2202 3694 4.664188 CACGAACATCATGCATTCAATCA 58.336 39.130 0.00 0.00 0.00 2.57
2203 3695 3.484649 GCACGAACATCATGCATTCAATC 59.515 43.478 0.00 0.00 39.23 2.67
2205 3697 2.415759 GGCACGAACATCATGCATTCAA 60.416 45.455 0.00 0.00 41.27 2.69
2207 3699 1.132834 TGGCACGAACATCATGCATTC 59.867 47.619 0.00 0.00 41.27 2.67
2208 3700 1.175654 TGGCACGAACATCATGCATT 58.824 45.000 0.00 0.00 41.27 3.56
2209 3701 1.175654 TTGGCACGAACATCATGCAT 58.824 45.000 0.00 0.00 41.27 3.96
2212 3704 4.236147 TCAATTTTGGCACGAACATCATG 58.764 39.130 0.00 0.00 0.00 3.07
2213 3705 4.218200 TCTCAATTTTGGCACGAACATCAT 59.782 37.500 0.00 0.00 0.00 2.45
2214 3706 3.567585 TCTCAATTTTGGCACGAACATCA 59.432 39.130 0.00 0.00 0.00 3.07
2215 3707 4.159377 TCTCAATTTTGGCACGAACATC 57.841 40.909 0.00 0.00 0.00 3.06
2216 3708 4.202101 TGTTCTCAATTTTGGCACGAACAT 60.202 37.500 0.00 0.00 35.67 2.71
2217 3709 3.129462 TGTTCTCAATTTTGGCACGAACA 59.871 39.130 0.00 0.00 37.51 3.18
2218 3710 3.701241 TGTTCTCAATTTTGGCACGAAC 58.299 40.909 0.00 0.00 0.00 3.95
2221 3713 4.084433 CCAAATGTTCTCAATTTTGGCACG 60.084 41.667 0.79 0.00 41.00 5.34
2222 3714 5.050159 GTCCAAATGTTCTCAATTTTGGCAC 60.050 40.000 8.12 4.91 44.94 5.01
2223 3715 5.055812 GTCCAAATGTTCTCAATTTTGGCA 58.944 37.500 8.12 0.00 44.94 4.92
2224 3716 5.055812 TGTCCAAATGTTCTCAATTTTGGC 58.944 37.500 8.12 5.11 44.94 4.52
2225 3717 7.117236 CAGATGTCCAAATGTTCTCAATTTTGG 59.883 37.037 6.89 6.89 46.09 3.28
2226 3718 7.868922 TCAGATGTCCAAATGTTCTCAATTTTG 59.131 33.333 0.00 0.00 0.00 2.44
2227 3719 7.954835 TCAGATGTCCAAATGTTCTCAATTTT 58.045 30.769 0.00 0.00 0.00 1.82
2229 3721 6.944290 TCTCAGATGTCCAAATGTTCTCAATT 59.056 34.615 0.00 0.00 0.00 2.32
2230 3722 6.479006 TCTCAGATGTCCAAATGTTCTCAAT 58.521 36.000 0.00 0.00 0.00 2.57
2231 3723 5.868454 TCTCAGATGTCCAAATGTTCTCAA 58.132 37.500 0.00 0.00 0.00 3.02
2232 3724 5.488262 TCTCAGATGTCCAAATGTTCTCA 57.512 39.130 0.00 0.00 0.00 3.27
2233 3725 5.163774 GCTTCTCAGATGTCCAAATGTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
2234 3726 4.699257 GCTTCTCAGATGTCCAAATGTTCT 59.301 41.667 0.00 0.00 0.00 3.01
2235 3727 4.142513 GGCTTCTCAGATGTCCAAATGTTC 60.143 45.833 0.00 0.00 0.00 3.18
2236 3728 3.760684 GGCTTCTCAGATGTCCAAATGTT 59.239 43.478 0.00 0.00 0.00 2.71
2238 3730 2.686915 GGGCTTCTCAGATGTCCAAATG 59.313 50.000 6.32 0.00 32.66 2.32
2239 3731 2.579860 AGGGCTTCTCAGATGTCCAAAT 59.420 45.455 13.49 0.00 34.49 2.32
2242 3734 1.198713 GAGGGCTTCTCAGATGTCCA 58.801 55.000 13.49 0.00 42.02 4.02
2267 3759 6.800072 TTTACAGACCCCAATTTTGTCTTT 57.200 33.333 0.00 0.00 37.25 2.52
2268 3760 6.800072 TTTTACAGACCCCAATTTTGTCTT 57.200 33.333 0.00 0.00 37.25 3.01
2269 3761 6.800072 TTTTTACAGACCCCAATTTTGTCT 57.200 33.333 0.00 0.00 39.86 3.41
2296 3788 9.616156 TCAGGTCTAAATTGTACAAAACAGTAA 57.384 29.630 13.23 0.00 39.87 2.24
2297 3789 9.787435 ATCAGGTCTAAATTGTACAAAACAGTA 57.213 29.630 13.23 0.35 39.87 2.74
2298 3790 8.691661 ATCAGGTCTAAATTGTACAAAACAGT 57.308 30.769 13.23 0.00 39.87 3.55
2299 3791 9.965824 AAATCAGGTCTAAATTGTACAAAACAG 57.034 29.630 13.23 9.51 39.87 3.16
2330 3822 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
2335 3827 1.720301 CATTTGAGCAGCTCTCGGC 59.280 57.895 23.15 0.00 44.86 5.54
2336 3828 1.712977 GGCATTTGAGCAGCTCTCGG 61.713 60.000 23.15 11.03 44.86 4.63
2338 3830 0.679002 TGGGCATTTGAGCAGCTCTC 60.679 55.000 23.15 7.20 42.23 3.20
2339 3831 0.251474 TTGGGCATTTGAGCAGCTCT 60.251 50.000 23.15 0.00 35.83 4.09
2340 3832 0.604578 TTTGGGCATTTGAGCAGCTC 59.395 50.000 16.21 16.21 35.83 4.09
2342 3834 1.365699 CATTTGGGCATTTGAGCAGC 58.634 50.000 0.00 0.00 35.83 5.25
2344 3836 0.978151 AGCATTTGGGCATTTGAGCA 59.022 45.000 0.00 0.00 35.83 4.26
2345 3837 1.206371 AGAGCATTTGGGCATTTGAGC 59.794 47.619 0.00 0.00 35.83 4.26
2346 3838 2.418197 CCAGAGCATTTGGGCATTTGAG 60.418 50.000 0.00 0.00 35.83 3.02
2347 3839 1.551430 CCAGAGCATTTGGGCATTTGA 59.449 47.619 0.00 0.00 35.83 2.69
2349 3841 1.941377 TCCAGAGCATTTGGGCATTT 58.059 45.000 1.93 0.00 36.34 2.32
2353 3845 2.624636 CAAATTCCAGAGCATTTGGGC 58.375 47.619 1.93 0.00 36.93 5.36
2356 3848 2.997986 GTGCCAAATTCCAGAGCATTTG 59.002 45.455 0.00 0.00 39.25 2.32
2357 3849 2.027837 GGTGCCAAATTCCAGAGCATTT 60.028 45.455 0.00 0.00 35.62 2.32
2358 3850 1.551883 GGTGCCAAATTCCAGAGCATT 59.448 47.619 0.00 0.00 35.62 3.56
2359 3851 1.188863 GGTGCCAAATTCCAGAGCAT 58.811 50.000 0.00 0.00 35.62 3.79
2360 3852 0.178967 TGGTGCCAAATTCCAGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
2361 3853 0.968405 TTGGTGCCAAATTCCAGAGC 59.032 50.000 0.47 0.00 32.44 4.09
2362 3854 1.962807 TGTTGGTGCCAAATTCCAGAG 59.037 47.619 5.09 0.00 37.70 3.35
2364 3856 2.299582 TGATGTTGGTGCCAAATTCCAG 59.700 45.455 5.09 0.00 37.70 3.86
2366 3858 2.687370 GTGATGTTGGTGCCAAATTCC 58.313 47.619 5.09 0.00 37.70 3.01
2367 3859 2.327568 CGTGATGTTGGTGCCAAATTC 58.672 47.619 5.09 6.38 37.70 2.17
2369 3861 0.038343 GCGTGATGTTGGTGCCAAAT 60.038 50.000 5.09 2.37 37.70 2.32
2370 3862 1.361993 GCGTGATGTTGGTGCCAAA 59.638 52.632 5.09 0.00 37.70 3.28
2372 3864 2.203266 TGCGTGATGTTGGTGCCA 60.203 55.556 0.00 0.00 0.00 4.92
2373 3865 2.187599 GAGTGCGTGATGTTGGTGCC 62.188 60.000 0.00 0.00 0.00 5.01
2374 3866 1.207593 GAGTGCGTGATGTTGGTGC 59.792 57.895 0.00 0.00 0.00 5.01
2375 3867 1.135888 CATGAGTGCGTGATGTTGGTG 60.136 52.381 0.00 0.00 32.63 4.17
2376 3868 1.159285 CATGAGTGCGTGATGTTGGT 58.841 50.000 0.00 0.00 32.63 3.67
2377 3869 0.179181 GCATGAGTGCGTGATGTTGG 60.179 55.000 0.00 0.00 42.28 3.77
2378 3870 3.301352 GCATGAGTGCGTGATGTTG 57.699 52.632 0.00 0.00 42.28 3.33
2388 3880 3.690628 TGTGTGGTGAATATGCATGAGTG 59.309 43.478 10.16 0.00 0.00 3.51
2389 3881 3.691118 GTGTGTGGTGAATATGCATGAGT 59.309 43.478 10.16 0.00 0.00 3.41
2390 3882 3.690628 TGTGTGTGGTGAATATGCATGAG 59.309 43.478 10.16 0.00 0.00 2.90
2391 3883 3.683802 TGTGTGTGGTGAATATGCATGA 58.316 40.909 10.16 0.00 0.00 3.07
2392 3884 4.437772 TTGTGTGTGGTGAATATGCATG 57.562 40.909 10.16 0.00 0.00 4.06
2393 3885 5.465532 TTTTGTGTGTGGTGAATATGCAT 57.534 34.783 3.79 3.79 0.00 3.96
2394 3886 4.926140 TTTTGTGTGTGGTGAATATGCA 57.074 36.364 0.00 0.00 0.00 3.96
2395 3887 5.120519 CCATTTTTGTGTGTGGTGAATATGC 59.879 40.000 0.00 0.00 0.00 3.14
2396 3888 6.453943 TCCATTTTTGTGTGTGGTGAATATG 58.546 36.000 0.00 0.00 33.47 1.78
2397 3889 6.662865 TCCATTTTTGTGTGTGGTGAATAT 57.337 33.333 0.00 0.00 33.47 1.28
2398 3890 6.097554 AGTTCCATTTTTGTGTGTGGTGAATA 59.902 34.615 0.00 0.00 33.47 1.75
2400 3892 4.221703 AGTTCCATTTTTGTGTGTGGTGAA 59.778 37.500 0.00 0.00 33.47 3.18
2401 3893 3.766591 AGTTCCATTTTTGTGTGTGGTGA 59.233 39.130 0.00 0.00 33.47 4.02
2402 3894 4.122143 AGTTCCATTTTTGTGTGTGGTG 57.878 40.909 0.00 0.00 33.47 4.17
2403 3895 4.817318 AAGTTCCATTTTTGTGTGTGGT 57.183 36.364 0.00 0.00 33.47 4.16
2404 3896 6.493449 AAAAAGTTCCATTTTTGTGTGTGG 57.507 33.333 0.00 0.00 40.07 4.17
2426 3918 9.245962 TGAACAGTAAAAACAAGAAAAACGAAA 57.754 25.926 0.00 0.00 0.00 3.46
2427 3919 8.692615 GTGAACAGTAAAAACAAGAAAAACGAA 58.307 29.630 0.00 0.00 0.00 3.85
2428 3920 7.326547 GGTGAACAGTAAAAACAAGAAAAACGA 59.673 33.333 0.00 0.00 0.00 3.85
2429 3921 7.441864 GGTGAACAGTAAAAACAAGAAAAACG 58.558 34.615 0.00 0.00 0.00 3.60
2430 3922 7.411049 CCGGTGAACAGTAAAAACAAGAAAAAC 60.411 37.037 0.00 0.00 0.00 2.43
2431 3923 6.586844 CCGGTGAACAGTAAAAACAAGAAAAA 59.413 34.615 0.00 0.00 0.00 1.94
2432 3924 6.094061 CCGGTGAACAGTAAAAACAAGAAAA 58.906 36.000 0.00 0.00 0.00 2.29
2433 3925 5.393243 CCCGGTGAACAGTAAAAACAAGAAA 60.393 40.000 0.00 0.00 0.00 2.52
2434 3926 4.096682 CCCGGTGAACAGTAAAAACAAGAA 59.903 41.667 0.00 0.00 0.00 2.52
2435 3927 3.628487 CCCGGTGAACAGTAAAAACAAGA 59.372 43.478 0.00 0.00 0.00 3.02
2436 3928 3.379057 ACCCGGTGAACAGTAAAAACAAG 59.621 43.478 0.00 0.00 0.00 3.16
2437 3929 3.128938 CACCCGGTGAACAGTAAAAACAA 59.871 43.478 12.68 0.00 35.23 2.83
2438 3930 2.683867 CACCCGGTGAACAGTAAAAACA 59.316 45.455 12.68 0.00 35.23 2.83
2439 3931 2.542205 GCACCCGGTGAACAGTAAAAAC 60.542 50.000 22.37 0.00 35.23 2.43
2440 3932 1.677052 GCACCCGGTGAACAGTAAAAA 59.323 47.619 22.37 0.00 35.23 1.94
2441 3933 1.310904 GCACCCGGTGAACAGTAAAA 58.689 50.000 22.37 0.00 35.23 1.52
2442 3934 0.180642 TGCACCCGGTGAACAGTAAA 59.819 50.000 22.37 0.00 35.23 2.01
2443 3935 0.398696 ATGCACCCGGTGAACAGTAA 59.601 50.000 22.37 0.00 35.23 2.24
2444 3936 0.036765 GATGCACCCGGTGAACAGTA 60.037 55.000 22.37 0.06 35.23 2.74
2445 3937 1.302511 GATGCACCCGGTGAACAGT 60.303 57.895 22.37 0.00 35.23 3.55
2446 3938 1.003355 AGATGCACCCGGTGAACAG 60.003 57.895 22.37 0.00 35.23 3.16
2447 3939 1.302431 CAGATGCACCCGGTGAACA 60.302 57.895 22.37 10.91 35.23 3.18
2448 3940 1.003839 TCAGATGCACCCGGTGAAC 60.004 57.895 22.37 10.80 35.23 3.18
2449 3941 1.296392 CTCAGATGCACCCGGTGAA 59.704 57.895 22.37 11.95 35.23 3.18
2450 3942 2.981302 CTCAGATGCACCCGGTGA 59.019 61.111 22.37 6.94 35.23 4.02
2451 3943 2.821366 GCTCAGATGCACCCGGTG 60.821 66.667 13.71 13.71 36.51 4.94
2452 3944 3.005539 AGCTCAGATGCACCCGGT 61.006 61.111 0.00 0.00 34.99 5.28
2453 3945 2.202987 GAGCTCAGATGCACCCGG 60.203 66.667 9.40 0.00 34.99 5.73
2454 3946 2.584418 CGAGCTCAGATGCACCCG 60.584 66.667 15.40 0.00 34.99 5.28
2455 3947 2.202987 CCGAGCTCAGATGCACCC 60.203 66.667 15.40 0.00 34.99 4.61
2456 3948 0.674895 AAACCGAGCTCAGATGCACC 60.675 55.000 15.40 0.00 34.99 5.01
2457 3949 1.129437 GAAAACCGAGCTCAGATGCAC 59.871 52.381 15.40 0.00 34.99 4.57
2458 3950 1.442769 GAAAACCGAGCTCAGATGCA 58.557 50.000 15.40 0.00 34.99 3.96
2459 3951 0.371645 CGAAAACCGAGCTCAGATGC 59.628 55.000 15.40 0.00 41.76 3.91
2460 3952 1.002366 CCGAAAACCGAGCTCAGATG 58.998 55.000 15.40 1.17 41.76 2.90
2461 3953 0.895530 TCCGAAAACCGAGCTCAGAT 59.104 50.000 15.40 0.00 41.76 2.90
2462 3954 0.677288 TTCCGAAAACCGAGCTCAGA 59.323 50.000 15.40 0.00 41.76 3.27
2463 3955 1.394917 CATTCCGAAAACCGAGCTCAG 59.605 52.381 15.40 4.66 41.76 3.35
2464 3956 1.438651 CATTCCGAAAACCGAGCTCA 58.561 50.000 15.40 0.00 41.76 4.26
2465 3957 0.097150 GCATTCCGAAAACCGAGCTC 59.903 55.000 2.73 2.73 41.76 4.09
2466 3958 0.605319 TGCATTCCGAAAACCGAGCT 60.605 50.000 0.00 0.00 41.76 4.09
2467 3959 0.451783 ATGCATTCCGAAAACCGAGC 59.548 50.000 0.00 0.00 41.76 5.03
2468 3960 4.094294 TCTTTATGCATTCCGAAAACCGAG 59.906 41.667 3.54 0.00 41.76 4.63
2469 3961 4.004314 TCTTTATGCATTCCGAAAACCGA 58.996 39.130 3.54 0.00 41.76 4.69
2470 3962 4.142687 ACTCTTTATGCATTCCGAAAACCG 60.143 41.667 3.54 0.00 38.18 4.44
2471 3963 5.095490 CACTCTTTATGCATTCCGAAAACC 58.905 41.667 3.54 0.00 0.00 3.27
2472 3964 4.558860 GCACTCTTTATGCATTCCGAAAAC 59.441 41.667 3.54 0.00 42.88 2.43
2473 3965 4.732784 GCACTCTTTATGCATTCCGAAAA 58.267 39.130 3.54 0.00 42.88 2.29
2474 3966 4.355543 GCACTCTTTATGCATTCCGAAA 57.644 40.909 3.54 0.00 42.88 3.46
2490 3982 7.170658 TAAAATGGTTTTATGCAACTTGCACTC 59.829 33.333 18.68 7.54 43.99 3.51
2491 3983 6.989169 TAAAATGGTTTTATGCAACTTGCACT 59.011 30.769 18.68 10.47 43.99 4.40
2492 3984 7.170658 TCTAAAATGGTTTTATGCAACTTGCAC 59.829 33.333 18.68 5.74 43.99 4.57
2493 3985 7.212976 TCTAAAATGGTTTTATGCAACTTGCA 58.787 30.769 18.60 18.60 44.65 4.08
2671 4175 8.007152 GTCGCCGTTTTTAAAATCATGAATTTT 58.993 29.630 13.74 14.78 46.72 1.82
2694 4198 1.215244 CAGCAGATGCATACTGGTCG 58.785 55.000 20.63 14.89 42.85 4.79
2703 4207 6.816134 TTTTAATAGTGAACAGCAGATGCA 57.184 33.333 7.68 0.00 45.16 3.96
2735 4239 9.167311 ACGTGAGCTAGAAATGAAAGATAAATT 57.833 29.630 0.00 0.00 0.00 1.82
2749 4253 2.164422 CCATCAGACACGTGAGCTAGAA 59.836 50.000 25.01 8.26 0.00 2.10
2750 4254 1.745653 CCATCAGACACGTGAGCTAGA 59.254 52.381 25.01 16.91 0.00 2.43
2751 4255 1.745653 TCCATCAGACACGTGAGCTAG 59.254 52.381 25.01 12.80 0.00 3.42
2752 4256 1.834188 TCCATCAGACACGTGAGCTA 58.166 50.000 25.01 5.18 0.00 3.32
2753 4257 0.969149 TTCCATCAGACACGTGAGCT 59.031 50.000 25.01 15.90 0.00 4.09
2754 4258 1.795768 TTTCCATCAGACACGTGAGC 58.204 50.000 25.01 13.72 0.00 4.26
2755 4259 4.025396 GCATATTTCCATCAGACACGTGAG 60.025 45.833 25.01 11.69 0.00 3.51
2756 4260 3.871006 GCATATTTCCATCAGACACGTGA 59.129 43.478 25.01 0.00 0.00 4.35
2757 4261 3.002656 GGCATATTTCCATCAGACACGTG 59.997 47.826 15.48 15.48 0.00 4.49
2758 4262 3.118261 AGGCATATTTCCATCAGACACGT 60.118 43.478 0.00 0.00 0.00 4.49
2759 4263 3.470709 AGGCATATTTCCATCAGACACG 58.529 45.455 0.00 0.00 0.00 4.49
2760 4264 6.291377 TCTAAGGCATATTTCCATCAGACAC 58.709 40.000 0.00 0.00 0.00 3.67
2761 4265 6.327365 TCTCTAAGGCATATTTCCATCAGACA 59.673 38.462 0.00 0.00 0.00 3.41
2762 4266 6.648725 GTCTCTAAGGCATATTTCCATCAGAC 59.351 42.308 0.00 0.00 0.00 3.51
2763 4267 6.327365 TGTCTCTAAGGCATATTTCCATCAGA 59.673 38.462 0.00 0.00 0.00 3.27
2764 4268 6.528321 TGTCTCTAAGGCATATTTCCATCAG 58.472 40.000 0.00 0.00 0.00 2.90
2765 4269 6.499106 TGTCTCTAAGGCATATTTCCATCA 57.501 37.500 0.00 0.00 0.00 3.07
2766 4270 7.992754 ATTGTCTCTAAGGCATATTTCCATC 57.007 36.000 0.00 0.00 25.43 3.51
2775 4279 9.686683 ACAACTTTATTATTGTCTCTAAGGCAT 57.313 29.630 0.00 0.00 33.80 4.40
2776 4280 9.515226 AACAACTTTATTATTGTCTCTAAGGCA 57.485 29.630 0.00 0.00 38.08 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.