Multiple sequence alignment - TraesCS7B01G469700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G469700 chr7B 100.000 2901 0 0 1 2901 726268984 726266084 0.000000e+00 5358.0
1 TraesCS7B01G469700 chr7B 95.304 873 39 2 1 871 726283575 726282703 0.000000e+00 1384.0
2 TraesCS7B01G469700 chr7B 94.755 877 38 7 1 872 117552637 117553510 0.000000e+00 1358.0
3 TraesCS7B01G469700 chr7B 88.398 1086 88 14 967 2049 726492130 726493180 0.000000e+00 1273.0
4 TraesCS7B01G469700 chr7B 88.104 1076 96 20 967 2018 726754559 726755626 0.000000e+00 1249.0
5 TraesCS7B01G469700 chr7B 86.151 1047 104 14 994 2013 726887726 726886694 0.000000e+00 1092.0
6 TraesCS7B01G469700 chr7B 86.108 1015 131 8 955 1960 726423508 726424521 0.000000e+00 1085.0
7 TraesCS7B01G469700 chr7B 86.042 960 114 11 967 1909 726697043 726697999 0.000000e+00 1013.0
8 TraesCS7B01G469700 chr7B 83.381 698 58 21 1983 2640 726303133 726303812 6.920000e-166 593.0
9 TraesCS7B01G469700 chr7B 89.894 376 31 3 2380 2754 726540205 726540574 7.270000e-131 477.0
10 TraesCS7B01G469700 chr7B 84.711 242 21 8 2046 2271 726495546 726495787 8.090000e-56 228.0
11 TraesCS7B01G469700 chr7B 93.162 117 8 0 2640 2756 726311449 726311565 3.840000e-39 172.0
12 TraesCS7B01G469700 chr7B 92.308 65 5 0 2202 2266 327620024 327620088 3.080000e-15 93.5
13 TraesCS7B01G469700 chr1B 95.304 873 37 3 1 872 327377262 327376393 0.000000e+00 1382.0
14 TraesCS7B01G469700 chr1B 94.514 875 45 3 1 872 229413955 229414829 0.000000e+00 1347.0
15 TraesCS7B01G469700 chr3B 95.080 874 40 3 1 872 335173007 335172135 0.000000e+00 1373.0
16 TraesCS7B01G469700 chr3B 94.508 874 46 2 1 872 194495223 194494350 0.000000e+00 1347.0
17 TraesCS7B01G469700 chr3B 82.310 407 43 19 2137 2528 167058769 167058377 2.790000e-85 326.0
18 TraesCS7B01G469700 chr1D 94.977 876 36 7 4 872 10233609 10232735 0.000000e+00 1367.0
19 TraesCS7B01G469700 chr1D 87.681 138 16 1 2764 2901 60183868 60184004 2.990000e-35 159.0
20 TraesCS7B01G469700 chr1D 77.978 277 36 18 2220 2487 445587682 445587422 1.800000e-32 150.0
21 TraesCS7B01G469700 chr1D 75.573 262 48 13 2270 2527 253214537 253214786 6.570000e-22 115.0
22 TraesCS7B01G469700 chr2B 94.857 875 42 3 1 872 568755760 568756634 0.000000e+00 1363.0
23 TraesCS7B01G469700 chr2B 94.508 874 46 2 1 872 254705603 254706476 0.000000e+00 1347.0
24 TraesCS7B01G469700 chr2B 82.022 178 24 4 2357 2531 416856971 416857143 8.380000e-31 145.0
25 TraesCS7B01G469700 chr2B 85.841 113 12 4 2342 2451 632999865 632999754 1.830000e-22 117.0
26 TraesCS7B01G469700 chr7A 87.838 1036 103 9 993 2017 722128041 722129064 0.000000e+00 1194.0
27 TraesCS7B01G469700 chr7A 85.525 1133 117 18 918 2026 722019356 722020465 0.000000e+00 1140.0
28 TraesCS7B01G469700 chr7A 88.095 210 23 1 2549 2756 722021448 722021657 6.210000e-62 248.0
29 TraesCS7B01G469700 chr7A 82.576 264 32 10 2275 2527 6608817 6609077 1.350000e-53 220.0
30 TraesCS7B01G469700 chr7A 97.222 36 1 0 1991 2026 722020484 722020519 8.680000e-06 62.1
31 TraesCS7B01G469700 chr7D 86.591 1059 125 7 967 2022 626438380 626439424 0.000000e+00 1153.0
32 TraesCS7B01G469700 chr7D 86.489 1051 111 15 993 2018 626597999 626596955 0.000000e+00 1125.0
33 TraesCS7B01G469700 chr7D 86.660 967 114 7 967 1919 626456230 626457195 0.000000e+00 1057.0
34 TraesCS7B01G469700 chr7D 89.349 507 47 6 2253 2756 626440125 626440627 5.280000e-177 630.0
35 TraesCS7B01G469700 chr7D 85.932 263 11 9 2019 2272 626439858 626440103 1.030000e-64 257.0
36 TraesCS7B01G469700 chr7D 89.209 139 12 3 2763 2901 10092708 10092843 1.380000e-38 171.0
37 TraesCS7B01G469700 chr2D 83.270 263 23 7 2270 2530 41917938 41918181 3.760000e-54 222.0
38 TraesCS7B01G469700 chr2D 83.108 148 16 7 2404 2550 630636937 630637076 3.030000e-25 126.0
39 TraesCS7B01G469700 chr2D 83.942 137 14 8 2763 2897 309086738 309086608 1.090000e-24 124.0
40 TraesCS7B01G469700 chr2A 83.133 249 27 6 2283 2530 43684495 43684729 2.260000e-51 213.0
41 TraesCS7B01G469700 chr2A 93.478 46 2 1 2491 2536 755699310 755699354 1.870000e-07 67.6
42 TraesCS7B01G469700 chr5A 90.647 139 7 2 2392 2529 451015615 451015482 2.300000e-41 180.0
43 TraesCS7B01G469700 chr5A 90.654 107 8 1 2764 2870 623324364 623324260 1.080000e-29 141.0
44 TraesCS7B01G469700 chr6A 86.145 166 22 1 2124 2288 16313790 16313955 8.260000e-41 178.0
45 TraesCS7B01G469700 chr6A 91.860 86 6 1 2355 2439 70224619 70224704 5.080000e-23 119.0
46 TraesCS7B01G469700 chr3A 88.811 143 15 1 2124 2266 47224905 47224764 1.070000e-39 174.0
47 TraesCS7B01G469700 chr3A 85.496 131 11 7 2763 2888 118491587 118491460 2.350000e-26 130.0
48 TraesCS7B01G469700 chr5B 78.644 295 24 18 2204 2461 527246815 527247107 2.990000e-35 159.0
49 TraesCS7B01G469700 chr6B 86.957 138 18 0 2764 2901 9311562 9311425 3.870000e-34 156.0
50 TraesCS7B01G469700 chr6B 82.659 173 20 6 2358 2527 480372023 480372188 8.380000e-31 145.0
51 TraesCS7B01G469700 chr6B 82.143 140 20 5 2763 2901 572116856 572116721 6.570000e-22 115.0
52 TraesCS7B01G469700 chr6B 80.451 133 18 7 2282 2412 175799398 175799524 8.560000e-16 95.3
53 TraesCS7B01G469700 chr6B 83.019 106 13 4 2338 2439 125858622 125858726 1.110000e-14 91.6
54 TraesCS7B01G469700 chr4A 86.555 119 12 4 2780 2897 743641796 743641911 8.440000e-26 128.0
55 TraesCS7B01G469700 chr1A 85.600 125 14 4 2780 2901 21342773 21342650 8.440000e-26 128.0
56 TraesCS7B01G469700 chr3D 90.741 54 0 4 2474 2527 582201096 582201144 1.870000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G469700 chr7B 726266084 726268984 2900 True 5358.000000 5358 100.000000 1 2901 1 chr7B.!!$R1 2900
1 TraesCS7B01G469700 chr7B 726282703 726283575 872 True 1384.000000 1384 95.304000 1 871 1 chr7B.!!$R2 870
2 TraesCS7B01G469700 chr7B 117552637 117553510 873 False 1358.000000 1358 94.755000 1 872 1 chr7B.!!$F1 871
3 TraesCS7B01G469700 chr7B 726754559 726755626 1067 False 1249.000000 1249 88.104000 967 2018 1 chr7B.!!$F8 1051
4 TraesCS7B01G469700 chr7B 726886694 726887726 1032 True 1092.000000 1092 86.151000 994 2013 1 chr7B.!!$R3 1019
5 TraesCS7B01G469700 chr7B 726423508 726424521 1013 False 1085.000000 1085 86.108000 955 1960 1 chr7B.!!$F5 1005
6 TraesCS7B01G469700 chr7B 726697043 726697999 956 False 1013.000000 1013 86.042000 967 1909 1 chr7B.!!$F7 942
7 TraesCS7B01G469700 chr7B 726492130 726495787 3657 False 750.500000 1273 86.554500 967 2271 2 chr7B.!!$F9 1304
8 TraesCS7B01G469700 chr7B 726303133 726303812 679 False 593.000000 593 83.381000 1983 2640 1 chr7B.!!$F3 657
9 TraesCS7B01G469700 chr1B 327376393 327377262 869 True 1382.000000 1382 95.304000 1 872 1 chr1B.!!$R1 871
10 TraesCS7B01G469700 chr1B 229413955 229414829 874 False 1347.000000 1347 94.514000 1 872 1 chr1B.!!$F1 871
11 TraesCS7B01G469700 chr3B 335172135 335173007 872 True 1373.000000 1373 95.080000 1 872 1 chr3B.!!$R3 871
12 TraesCS7B01G469700 chr3B 194494350 194495223 873 True 1347.000000 1347 94.508000 1 872 1 chr3B.!!$R2 871
13 TraesCS7B01G469700 chr1D 10232735 10233609 874 True 1367.000000 1367 94.977000 4 872 1 chr1D.!!$R1 868
14 TraesCS7B01G469700 chr2B 568755760 568756634 874 False 1363.000000 1363 94.857000 1 872 1 chr2B.!!$F3 871
15 TraesCS7B01G469700 chr2B 254705603 254706476 873 False 1347.000000 1347 94.508000 1 872 1 chr2B.!!$F1 871
16 TraesCS7B01G469700 chr7A 722128041 722129064 1023 False 1194.000000 1194 87.838000 993 2017 1 chr7A.!!$F2 1024
17 TraesCS7B01G469700 chr7A 722019356 722021657 2301 False 483.366667 1140 90.280667 918 2756 3 chr7A.!!$F3 1838
18 TraesCS7B01G469700 chr7D 626596955 626597999 1044 True 1125.000000 1125 86.489000 993 2018 1 chr7D.!!$R1 1025
19 TraesCS7B01G469700 chr7D 626456230 626457195 965 False 1057.000000 1057 86.660000 967 1919 1 chr7D.!!$F2 952
20 TraesCS7B01G469700 chr7D 626438380 626440627 2247 False 680.000000 1153 87.290667 967 2756 3 chr7D.!!$F3 1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 920 0.036732 TCACTGGCAGACATCAACCC 59.963 55.0 23.66 0.0 0.0 4.11 F
911 921 0.250858 CACTGGCAGACATCAACCCA 60.251 55.0 23.66 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1911 0.035056 GGGTGTGGATGTTGAGGAGG 60.035 60.0 0.0 0.0 0.00 4.30 R
2810 6330 0.036732 TTGTTAGTGCAGAGGCTGGG 59.963 55.0 0.0 0.0 41.91 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
364 369 3.637911 TCCCATACGCAAACAACCTAT 57.362 42.857 0.00 0.00 0.00 2.57
401 406 4.293648 TGTCACTCACGCCACCCG 62.294 66.667 0.00 0.00 44.21 5.28
497 502 8.454106 GCATAATAGGACAGCACCAATAATAAG 58.546 37.037 0.00 0.00 0.00 1.73
638 644 2.490903 GTTCAAGTAGAGGGTACAGCGA 59.509 50.000 0.00 0.00 0.00 4.93
664 670 1.021390 GGTGAGTGGACCGCTGAATG 61.021 60.000 13.57 0.00 0.00 2.67
705 711 3.307691 GGAGATGTTGGTGAAGATGGTGA 60.308 47.826 0.00 0.00 0.00 4.02
791 801 2.770475 GGGAGAGAGCCCCCTTCC 60.770 72.222 0.00 0.00 42.62 3.46
793 803 1.307430 GGAGAGAGCCCCCTTCCTT 60.307 63.158 0.00 0.00 0.00 3.36
799 809 1.789536 AGAGCCCCCTTCCTTTTCTTT 59.210 47.619 0.00 0.00 0.00 2.52
858 868 0.846427 TCTGGTCCTTGGCTCCCATT 60.846 55.000 0.00 0.00 31.53 3.16
863 873 0.114954 TCCTTGGCTCCCATTGCTTT 59.885 50.000 0.00 0.00 31.53 3.51
872 882 1.610086 CCATTGCTTTGGAGGGGCA 60.610 57.895 0.00 0.00 39.25 5.36
873 883 1.593265 CATTGCTTTGGAGGGGCAC 59.407 57.895 0.00 0.00 35.62 5.01
874 884 1.155859 ATTGCTTTGGAGGGGCACA 59.844 52.632 0.00 0.00 35.62 4.57
875 885 1.187567 ATTGCTTTGGAGGGGCACAC 61.188 55.000 0.00 0.00 35.62 3.82
876 886 3.365265 GCTTTGGAGGGGCACACG 61.365 66.667 0.00 0.00 0.00 4.49
877 887 2.113139 CTTTGGAGGGGCACACGT 59.887 61.111 0.00 0.00 0.00 4.49
878 888 2.203280 TTTGGAGGGGCACACGTG 60.203 61.111 15.48 15.48 0.00 4.49
879 889 2.674563 CTTTGGAGGGGCACACGTGA 62.675 60.000 25.01 0.00 0.00 4.35
880 890 2.272230 TTTGGAGGGGCACACGTGAA 62.272 55.000 25.01 0.00 0.00 3.18
881 891 2.112297 GGAGGGGCACACGTGAAA 59.888 61.111 25.01 0.00 0.00 2.69
882 892 1.966451 GGAGGGGCACACGTGAAAG 60.966 63.158 25.01 12.58 0.00 2.62
883 893 2.594592 AGGGGCACACGTGAAAGC 60.595 61.111 25.01 21.28 0.00 3.51
884 894 4.025401 GGGGCACACGTGAAAGCG 62.025 66.667 25.01 5.96 37.94 4.68
885 895 4.683334 GGGCACACGTGAAAGCGC 62.683 66.667 25.01 24.26 34.88 5.92
892 902 2.128128 CGTGAAAGCGCGTGTGTC 60.128 61.111 8.43 0.26 42.72 3.67
893 903 2.866010 CGTGAAAGCGCGTGTGTCA 61.866 57.895 8.43 3.39 42.72 3.58
894 904 1.367665 GTGAAAGCGCGTGTGTCAC 60.368 57.895 15.33 15.33 32.55 3.67
895 905 1.520564 TGAAAGCGCGTGTGTCACT 60.521 52.632 8.43 0.00 31.34 3.41
896 906 1.083401 GAAAGCGCGTGTGTCACTG 60.083 57.895 8.43 0.00 31.34 3.66
897 907 2.430080 GAAAGCGCGTGTGTCACTGG 62.430 60.000 8.43 0.00 31.34 4.00
900 910 3.705638 CGCGTGTGTCACTGGCAG 61.706 66.667 14.16 14.16 31.34 4.85
901 911 2.280119 GCGTGTGTCACTGGCAGA 60.280 61.111 23.66 0.00 31.34 4.26
902 912 2.598632 GCGTGTGTCACTGGCAGAC 61.599 63.158 23.66 10.90 36.55 3.51
903 913 1.227234 CGTGTGTCACTGGCAGACA 60.227 57.895 23.66 13.70 43.23 3.41
904 914 0.601046 CGTGTGTCACTGGCAGACAT 60.601 55.000 23.66 0.00 46.52 3.06
905 915 1.151668 GTGTGTCACTGGCAGACATC 58.848 55.000 23.66 11.07 46.52 3.06
906 916 0.758123 TGTGTCACTGGCAGACATCA 59.242 50.000 23.66 13.30 46.52 3.07
907 917 1.140652 TGTGTCACTGGCAGACATCAA 59.859 47.619 23.66 3.90 46.52 2.57
908 918 1.532868 GTGTCACTGGCAGACATCAAC 59.467 52.381 23.66 9.66 46.52 3.18
909 919 1.160137 GTCACTGGCAGACATCAACC 58.840 55.000 23.66 0.00 36.06 3.77
910 920 0.036732 TCACTGGCAGACATCAACCC 59.963 55.000 23.66 0.00 0.00 4.11
911 921 0.250858 CACTGGCAGACATCAACCCA 60.251 55.000 23.66 0.00 0.00 4.51
912 922 0.250901 ACTGGCAGACATCAACCCAC 60.251 55.000 23.66 0.00 0.00 4.61
913 923 1.300971 CTGGCAGACATCAACCCACG 61.301 60.000 9.42 0.00 0.00 4.94
914 924 1.302511 GGCAGACATCAACCCACGT 60.303 57.895 0.00 0.00 0.00 4.49
915 925 1.298859 GGCAGACATCAACCCACGTC 61.299 60.000 0.00 0.00 0.00 4.34
916 926 1.298859 GCAGACATCAACCCACGTCC 61.299 60.000 0.00 0.00 0.00 4.79
940 950 3.750652 GCTCAGCTGGGATCTTTATAAGC 59.249 47.826 20.53 8.90 0.00 3.09
943 953 3.817647 CAGCTGGGATCTTTATAAGCCAC 59.182 47.826 5.57 0.00 0.00 5.01
960 970 2.180204 ACCAACGCTGCACAGACAC 61.180 57.895 0.81 0.00 0.00 3.67
961 971 2.246397 CAACGCTGCACAGACACG 59.754 61.111 0.81 0.00 0.00 4.49
964 974 3.639008 CGCTGCACAGACACGCAA 61.639 61.111 0.81 0.00 37.76 4.85
1533 1574 1.373497 CATCGCGGCTGAGTATCCC 60.373 63.158 6.13 0.00 0.00 3.85
1582 1623 4.459089 GAGGTGACCGGGCTGCTC 62.459 72.222 9.82 0.00 0.00 4.26
1591 1632 2.729479 CGGGCTGCTCATGGAGTCT 61.729 63.158 0.00 0.00 36.46 3.24
1594 1635 1.078637 GCTGCTCATGGAGTCTGCA 60.079 57.895 0.00 0.00 34.13 4.41
1720 1761 1.133823 TGCCTGGTGAAGAAGAGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
1726 1767 5.248870 TGGTGAAGAAGAGCAAAAAGAAC 57.751 39.130 0.00 0.00 0.00 3.01
1808 1852 1.620739 GGAGCTGGAGGAGTGCATCA 61.621 60.000 0.00 0.00 0.00 3.07
1821 1865 1.759445 GTGCATCAAGGAGCTAGAGGA 59.241 52.381 0.00 0.00 0.00 3.71
1823 1867 1.759445 GCATCAAGGAGCTAGAGGACA 59.241 52.381 0.00 0.00 0.00 4.02
1909 1953 7.092846 ACCCTGCACATCTTCTAACTTTACTAT 60.093 37.037 0.00 0.00 0.00 2.12
1925 1986 8.102484 ACTTTACTATTACCACCATCCATCTT 57.898 34.615 0.00 0.00 0.00 2.40
1926 1987 9.220906 ACTTTACTATTACCACCATCCATCTTA 57.779 33.333 0.00 0.00 0.00 2.10
1927 1988 9.712305 CTTTACTATTACCACCATCCATCTTAG 57.288 37.037 0.00 0.00 0.00 2.18
1928 1989 6.115448 ACTATTACCACCATCCATCTTAGC 57.885 41.667 0.00 0.00 0.00 3.09
2041 3124 2.778299 ACTAATCTTGGTTCTGCGCAA 58.222 42.857 13.05 0.00 0.00 4.85
2096 5548 7.453393 TCATGATGTTAAAAGAGAAGTGGAGT 58.547 34.615 0.00 0.00 0.00 3.85
2105 5557 4.065321 AGAGAAGTGGAGTGTGACAAAG 57.935 45.455 0.00 0.00 0.00 2.77
2153 5621 3.814283 GACCGGTCGATTCTATCTGTACT 59.186 47.826 20.85 0.00 0.00 2.73
2167 5635 8.311395 TCTATCTGTACTGTTGGATCAAGATT 57.689 34.615 0.00 0.00 0.00 2.40
2177 5645 4.486125 TGGATCAAGATTCAACGGATCA 57.514 40.909 0.00 0.00 36.86 2.92
2236 5704 2.927856 TTCTTCCTCTGGCCGCCA 60.928 61.111 12.67 12.67 0.00 5.69
2298 5812 4.489771 CCCCACCGCTAGGCTTGG 62.490 72.222 0.00 0.00 42.76 3.61
2328 5842 2.768344 CCATCCCTGTAGGCCCGT 60.768 66.667 0.00 0.00 34.51 5.28
2332 5846 3.470888 CCCTGTAGGCCCGTCCTG 61.471 72.222 0.00 0.00 46.98 3.86
2335 5849 0.469331 CCTGTAGGCCCGTCCTGATA 60.469 60.000 0.00 0.00 46.98 2.15
2349 5864 5.915758 CCGTCCTGATATAGTTTTCTTCTCG 59.084 44.000 0.00 0.00 0.00 4.04
2361 5876 1.176619 TCTTCTCGGACGAAGCCACA 61.177 55.000 10.47 0.00 40.11 4.17
2370 5885 4.643387 GAAGCCACACCACCGCCT 62.643 66.667 0.00 0.00 0.00 5.52
2380 5895 4.410400 CACCGCCTTCCACCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
2416 5932 5.785940 ACCCTAAGATAGATAATGGGGTGAC 59.214 44.000 0.00 0.00 43.39 3.67
2473 5989 5.320277 CATTCCTTCTCCTTCCTTCACTTT 58.680 41.667 0.00 0.00 0.00 2.66
2483 6000 5.245301 TCCTTCCTTCACTTTAATCGACTGA 59.755 40.000 0.00 0.00 0.00 3.41
2484 6001 5.348997 CCTTCCTTCACTTTAATCGACTGAC 59.651 44.000 0.00 0.00 0.00 3.51
2485 6002 4.817517 TCCTTCACTTTAATCGACTGACC 58.182 43.478 0.00 0.00 0.00 4.02
2486 6003 3.933332 CCTTCACTTTAATCGACTGACCC 59.067 47.826 0.00 0.00 0.00 4.46
2487 6004 4.562757 CCTTCACTTTAATCGACTGACCCA 60.563 45.833 0.00 0.00 0.00 4.51
2530 6047 7.353414 AGCTGACTGAAATGTAGCTAATCTA 57.647 36.000 0.00 0.00 42.45 1.98
2567 6084 1.331214 ATGCCGGGAATTAAGCATGG 58.669 50.000 0.00 0.00 43.99 3.66
2602 6119 8.193438 CACTGATCAGTAGTAATCTTGTCATCA 58.807 37.037 27.44 0.00 40.20 3.07
2627 6144 6.594937 AGAACAAAATGTGCAACTCATGTTTT 59.405 30.769 9.06 2.74 38.04 2.43
2685 6205 3.955471 TGGATCTCCTTTGAATTTCGCT 58.045 40.909 0.00 0.00 36.82 4.93
2705 6225 4.261155 CGCTGTGAATTTGGAGACTTTGAA 60.261 41.667 0.00 0.00 0.00 2.69
2733 6253 5.193099 AGGCCCATCTGTTATTTACTGTT 57.807 39.130 0.00 0.00 0.00 3.16
2746 6266 9.337396 TGTTATTTACTGTTGAAGCCCATATAG 57.663 33.333 0.00 0.00 0.00 1.31
2760 6280 4.828072 CCATATAGGGAGAGGGCTAAAC 57.172 50.000 0.00 0.00 0.00 2.01
2761 6281 4.168101 CCATATAGGGAGAGGGCTAAACA 58.832 47.826 0.00 0.00 0.00 2.83
2762 6282 4.785376 CCATATAGGGAGAGGGCTAAACAT 59.215 45.833 0.00 0.00 0.00 2.71
2763 6283 5.251700 CCATATAGGGAGAGGGCTAAACATT 59.748 44.000 0.00 0.00 0.00 2.71
2764 6284 6.240292 CCATATAGGGAGAGGGCTAAACATTT 60.240 42.308 0.00 0.00 0.00 2.32
2765 6285 5.734031 ATAGGGAGAGGGCTAAACATTTT 57.266 39.130 0.00 0.00 0.00 1.82
2766 6286 4.404185 AGGGAGAGGGCTAAACATTTTT 57.596 40.909 0.00 0.00 0.00 1.94
2813 6333 7.872061 ATCATAGAGATACCAATTACACCCA 57.128 36.000 0.00 0.00 34.43 4.51
2814 6334 7.303182 TCATAGAGATACCAATTACACCCAG 57.697 40.000 0.00 0.00 0.00 4.45
2815 6335 4.423625 AGAGATACCAATTACACCCAGC 57.576 45.455 0.00 0.00 0.00 4.85
2816 6336 3.136626 AGAGATACCAATTACACCCAGCC 59.863 47.826 0.00 0.00 0.00 4.85
2817 6337 3.123273 AGATACCAATTACACCCAGCCT 58.877 45.455 0.00 0.00 0.00 4.58
2818 6338 3.136626 AGATACCAATTACACCCAGCCTC 59.863 47.826 0.00 0.00 0.00 4.70
2819 6339 1.372501 ACCAATTACACCCAGCCTCT 58.627 50.000 0.00 0.00 0.00 3.69
2820 6340 1.004745 ACCAATTACACCCAGCCTCTG 59.995 52.381 0.00 0.00 0.00 3.35
2821 6341 1.098050 CAATTACACCCAGCCTCTGC 58.902 55.000 0.00 0.00 37.95 4.26
2822 6342 0.698238 AATTACACCCAGCCTCTGCA 59.302 50.000 0.00 0.00 41.13 4.41
2823 6343 0.035056 ATTACACCCAGCCTCTGCAC 60.035 55.000 0.00 0.00 41.13 4.57
2824 6344 1.127567 TTACACCCAGCCTCTGCACT 61.128 55.000 0.00 0.00 41.13 4.40
2825 6345 0.252057 TACACCCAGCCTCTGCACTA 60.252 55.000 0.00 0.00 41.13 2.74
2826 6346 1.127567 ACACCCAGCCTCTGCACTAA 61.128 55.000 0.00 0.00 41.13 2.24
2827 6347 0.674895 CACCCAGCCTCTGCACTAAC 60.675 60.000 0.00 0.00 41.13 2.34
2828 6348 1.127567 ACCCAGCCTCTGCACTAACA 61.128 55.000 0.00 0.00 41.13 2.41
2829 6349 0.036732 CCCAGCCTCTGCACTAACAA 59.963 55.000 0.00 0.00 41.13 2.83
2830 6350 1.545428 CCCAGCCTCTGCACTAACAAA 60.545 52.381 0.00 0.00 41.13 2.83
2831 6351 2.229792 CCAGCCTCTGCACTAACAAAA 58.770 47.619 0.00 0.00 41.13 2.44
2832 6352 2.821969 CCAGCCTCTGCACTAACAAAAT 59.178 45.455 0.00 0.00 41.13 1.82
2833 6353 3.366679 CCAGCCTCTGCACTAACAAAATG 60.367 47.826 0.00 0.00 41.13 2.32
2834 6354 3.254166 CAGCCTCTGCACTAACAAAATGT 59.746 43.478 0.00 0.00 41.13 2.71
2835 6355 3.503748 AGCCTCTGCACTAACAAAATGTC 59.496 43.478 0.00 0.00 41.13 3.06
2836 6356 3.253188 GCCTCTGCACTAACAAAATGTCA 59.747 43.478 0.00 0.00 37.47 3.58
2837 6357 4.787598 CCTCTGCACTAACAAAATGTCAC 58.212 43.478 0.00 0.00 0.00 3.67
2838 6358 4.275689 CCTCTGCACTAACAAAATGTCACA 59.724 41.667 0.00 0.00 0.00 3.58
2839 6359 5.221028 CCTCTGCACTAACAAAATGTCACAA 60.221 40.000 0.00 0.00 0.00 3.33
2840 6360 6.201226 TCTGCACTAACAAAATGTCACAAA 57.799 33.333 0.00 0.00 0.00 2.83
2841 6361 6.033341 TCTGCACTAACAAAATGTCACAAAC 58.967 36.000 0.00 0.00 0.00 2.93
2842 6362 4.795795 TGCACTAACAAAATGTCACAAACG 59.204 37.500 0.00 0.00 0.00 3.60
2843 6363 5.031578 GCACTAACAAAATGTCACAAACGA 58.968 37.500 0.00 0.00 0.00 3.85
2844 6364 5.052633 GCACTAACAAAATGTCACAAACGAC 60.053 40.000 0.00 0.00 36.40 4.34
2853 6373 4.801330 TGTCACAAACGACATCTAGGAT 57.199 40.909 0.00 0.00 40.94 3.24
2854 6374 4.494484 TGTCACAAACGACATCTAGGATG 58.506 43.478 6.04 6.04 40.94 3.51
2855 6375 3.307242 GTCACAAACGACATCTAGGATGC 59.693 47.826 7.35 1.06 35.88 3.91
2856 6376 3.056179 TCACAAACGACATCTAGGATGCA 60.056 43.478 7.35 0.00 0.00 3.96
2857 6377 3.062639 CACAAACGACATCTAGGATGCAC 59.937 47.826 7.35 2.45 0.00 4.57
2858 6378 3.261580 CAAACGACATCTAGGATGCACA 58.738 45.455 7.35 0.00 0.00 4.57
2859 6379 2.586258 ACGACATCTAGGATGCACAC 57.414 50.000 7.35 0.00 0.00 3.82
2860 6380 1.824852 ACGACATCTAGGATGCACACA 59.175 47.619 7.35 0.00 0.00 3.72
2861 6381 2.159184 ACGACATCTAGGATGCACACAG 60.159 50.000 7.35 0.00 0.00 3.66
2862 6382 2.208431 GACATCTAGGATGCACACAGC 58.792 52.381 7.35 0.00 45.96 4.40
2872 6392 4.503741 GATGCACACAGCCTAAAAGAAA 57.496 40.909 0.00 0.00 44.83 2.52
2873 6393 4.870363 GATGCACACAGCCTAAAAGAAAA 58.130 39.130 0.00 0.00 44.83 2.29
2874 6394 4.727507 TGCACACAGCCTAAAAGAAAAA 57.272 36.364 0.00 0.00 44.83 1.94
2897 6417 9.658799 AAAAAGGAAGAAGAAAAGGAAGAAAAG 57.341 29.630 0.00 0.00 0.00 2.27
2898 6418 6.968263 AGGAAGAAGAAAAGGAAGAAAAGG 57.032 37.500 0.00 0.00 0.00 3.11
2899 6419 5.303078 AGGAAGAAGAAAAGGAAGAAAAGGC 59.697 40.000 0.00 0.00 0.00 4.35
2900 6420 5.509840 GGAAGAAGAAAAGGAAGAAAAGGCC 60.510 44.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.307976 TGCAAACCTATCCTATCACAGCTAT 59.692 40.000 0.00 0.00 0.00 2.97
364 369 1.968493 AGAAGCACAGACCCGAGTAAA 59.032 47.619 0.00 0.00 0.00 2.01
401 406 7.359765 GCAATATGTTCATGATTTGCTTATGGC 60.360 37.037 15.04 10.70 37.18 4.40
474 479 8.710239 TGTCTTATTATTGGTGCTGTCCTATTA 58.290 33.333 0.00 0.00 0.00 0.98
497 502 3.715495 TGATTGGTTTGTGTTGCATGTC 58.285 40.909 0.00 0.00 0.00 3.06
638 644 2.426023 GTCCACTCACCCGCAACT 59.574 61.111 0.00 0.00 0.00 3.16
664 670 1.421646 CCATCACCTTCCCCCATCTAC 59.578 57.143 0.00 0.00 0.00 2.59
705 711 1.523758 GCGATCTTCACCAACACCTT 58.476 50.000 0.00 0.00 0.00 3.50
768 774 2.285743 GGGCTCTCTCCCCCTTGT 60.286 66.667 0.00 0.00 40.51 3.16
791 801 5.010112 GGAGGAGGTCAAGGAAAAAGAAAAG 59.990 44.000 0.00 0.00 0.00 2.27
793 803 4.168088 AGGAGGAGGTCAAGGAAAAAGAAA 59.832 41.667 0.00 0.00 0.00 2.52
799 809 4.141990 TCTAAGGAGGAGGTCAAGGAAA 57.858 45.455 0.00 0.00 0.00 3.13
858 868 2.203480 GTGTGCCCCTCCAAAGCA 60.203 61.111 0.00 0.00 0.00 3.91
863 873 2.674563 CTTTCACGTGTGCCCCTCCA 62.675 60.000 16.51 0.00 0.00 3.86
874 884 2.867091 GACACACGCGCTTTCACGT 61.867 57.895 5.73 0.00 44.75 4.49
875 885 2.128128 GACACACGCGCTTTCACG 60.128 61.111 5.73 0.00 0.00 4.35
876 886 1.367665 GTGACACACGCGCTTTCAC 60.368 57.895 5.73 10.53 0.00 3.18
877 887 1.520564 AGTGACACACGCGCTTTCA 60.521 52.632 5.73 0.26 39.64 2.69
878 888 1.083401 CAGTGACACACGCGCTTTC 60.083 57.895 5.73 0.00 39.64 2.62
879 889 2.534019 CCAGTGACACACGCGCTTT 61.534 57.895 5.73 0.00 39.64 3.51
880 890 2.967076 CCAGTGACACACGCGCTT 60.967 61.111 5.73 0.00 39.64 4.68
883 893 3.705638 CTGCCAGTGACACACGCG 61.706 66.667 3.53 3.53 39.64 6.01
884 894 2.280119 TCTGCCAGTGACACACGC 60.280 61.111 8.59 9.03 39.64 5.34
885 895 0.601046 ATGTCTGCCAGTGACACACG 60.601 55.000 8.59 0.00 45.57 4.49
886 896 1.151668 GATGTCTGCCAGTGACACAC 58.848 55.000 8.59 0.00 45.57 3.82
887 897 0.758123 TGATGTCTGCCAGTGACACA 59.242 50.000 8.59 0.00 45.57 3.72
888 898 1.532868 GTTGATGTCTGCCAGTGACAC 59.467 52.381 0.00 0.00 45.57 3.67
889 899 1.543208 GGTTGATGTCTGCCAGTGACA 60.543 52.381 0.00 0.00 46.58 3.58
890 900 1.160137 GGTTGATGTCTGCCAGTGAC 58.840 55.000 0.00 0.00 35.21 3.67
891 901 0.036732 GGGTTGATGTCTGCCAGTGA 59.963 55.000 0.00 0.00 0.00 3.41
892 902 0.250858 TGGGTTGATGTCTGCCAGTG 60.251 55.000 0.00 0.00 0.00 3.66
893 903 0.250901 GTGGGTTGATGTCTGCCAGT 60.251 55.000 0.00 0.00 0.00 4.00
894 904 1.300971 CGTGGGTTGATGTCTGCCAG 61.301 60.000 0.00 0.00 0.00 4.85
895 905 1.302431 CGTGGGTTGATGTCTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
896 906 1.298859 GACGTGGGTTGATGTCTGCC 61.299 60.000 0.00 0.00 0.00 4.85
897 907 1.298859 GGACGTGGGTTGATGTCTGC 61.299 60.000 0.00 0.00 33.13 4.26
898 908 0.034756 TGGACGTGGGTTGATGTCTG 59.965 55.000 0.00 0.00 33.13 3.51
899 909 0.321671 CTGGACGTGGGTTGATGTCT 59.678 55.000 0.00 0.00 33.13 3.41
900 910 1.298859 GCTGGACGTGGGTTGATGTC 61.299 60.000 0.00 0.00 0.00 3.06
901 911 1.302511 GCTGGACGTGGGTTGATGT 60.303 57.895 0.00 0.00 0.00 3.06
902 912 1.003355 AGCTGGACGTGGGTTGATG 60.003 57.895 0.00 0.00 0.00 3.07
903 913 1.296715 GAGCTGGACGTGGGTTGAT 59.703 57.895 0.00 0.00 0.00 2.57
904 914 2.099652 CTGAGCTGGACGTGGGTTGA 62.100 60.000 0.00 0.00 0.00 3.18
905 915 1.669115 CTGAGCTGGACGTGGGTTG 60.669 63.158 0.00 0.00 0.00 3.77
906 916 2.743718 CTGAGCTGGACGTGGGTT 59.256 61.111 0.00 0.00 0.00 4.11
907 917 4.008933 GCTGAGCTGGACGTGGGT 62.009 66.667 0.00 0.00 0.00 4.51
908 918 3.699894 AGCTGAGCTGGACGTGGG 61.700 66.667 5.97 0.00 37.57 4.61
940 950 2.591429 TCTGTGCAGCGTTGGTGG 60.591 61.111 0.16 0.00 0.00 4.61
943 953 2.633657 GTGTCTGTGCAGCGTTGG 59.366 61.111 0.16 0.00 0.00 3.77
960 970 1.339235 CTTTGCGATGGTTGCTTGCG 61.339 55.000 0.00 0.00 0.00 4.85
961 971 1.620413 GCTTTGCGATGGTTGCTTGC 61.620 55.000 0.00 0.00 0.00 4.01
1011 1039 1.447838 GGAGATGGAGCGCACGAAA 60.448 57.895 11.47 0.00 0.00 3.46
1119 1158 3.371097 GAGGTGCGCCAGAATCGGA 62.371 63.158 20.59 0.00 37.19 4.55
1125 1164 4.314440 GTGTGGAGGTGCGCCAGA 62.314 66.667 20.59 0.00 33.24 3.86
1181 1220 3.240134 GAGGAGACCAACGCTGCCA 62.240 63.158 0.00 0.00 0.00 4.92
1185 1224 2.600769 ACGGAGGAGACCAACGCT 60.601 61.111 0.00 0.00 0.00 5.07
1309 1348 1.682684 GGAAGGAGTCGAGGAGGCA 60.683 63.158 0.00 0.00 0.00 4.75
1522 1563 4.301027 CCGCCGGGGATACTCAGC 62.301 72.222 21.95 0.00 36.02 4.26
1555 1596 3.371063 GTCACCTCGACCTCCGCA 61.371 66.667 0.00 0.00 38.85 5.69
1582 1623 3.200593 GCCGCTGCAGACTCCATG 61.201 66.667 20.43 0.00 37.47 3.66
1642 1683 1.755395 CTCCACGGACCCGGACATA 60.755 63.158 13.43 0.00 44.69 2.29
1720 1761 2.737376 GGCGCCGACGAGTTCTTT 60.737 61.111 12.58 0.00 43.93 2.52
1786 1830 1.986757 GCACTCCTCCAGCTCCTCA 60.987 63.158 0.00 0.00 0.00 3.86
1808 1852 1.484038 CTGCTGTCCTCTAGCTCCTT 58.516 55.000 0.00 0.00 41.66 3.36
1821 1865 0.601311 GAACACCTTCTCGCTGCTGT 60.601 55.000 0.00 0.00 0.00 4.40
1823 1867 1.004440 GGAACACCTTCTCGCTGCT 60.004 57.895 0.00 0.00 0.00 4.24
1867 1911 0.035056 GGGTGTGGATGTTGAGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
1909 1953 4.040461 GCTAGCTAAGATGGATGGTGGTAA 59.960 45.833 7.70 0.00 0.00 2.85
2096 5548 4.974645 AGTCATTCCCTACTTTGTCACA 57.025 40.909 0.00 0.00 0.00 3.58
2105 5557 6.151144 ACAAAAACAGCATAGTCATTCCCTAC 59.849 38.462 0.00 0.00 0.00 3.18
2153 5621 4.014569 TCCGTTGAATCTTGATCCAACA 57.985 40.909 11.99 0.00 38.91 3.33
2167 5635 1.827344 AGATGACTGCTGATCCGTTGA 59.173 47.619 0.00 0.00 0.00 3.18
2177 5645 1.649321 TGAGGTGGAAGATGACTGCT 58.351 50.000 0.00 0.00 0.00 4.24
2236 5704 2.670148 GGTTCGGCCTGGACTGGAT 61.670 63.158 0.00 0.00 0.00 3.41
2328 5842 6.238676 CGTCCGAGAAGAAAACTATATCAGGA 60.239 42.308 0.00 0.00 0.00 3.86
2331 5845 6.688637 TCGTCCGAGAAGAAAACTATATCA 57.311 37.500 0.00 0.00 0.00 2.15
2349 5864 2.668550 GGTGGTGTGGCTTCGTCC 60.669 66.667 0.00 0.00 0.00 4.79
2370 5885 2.856988 GGTGTGGGGAGGGTGGAA 60.857 66.667 0.00 0.00 0.00 3.53
2377 5892 2.757077 GGTTCAGGGTGTGGGGAG 59.243 66.667 0.00 0.00 0.00 4.30
2378 5893 2.051050 TAGGGTTCAGGGTGTGGGGA 62.051 60.000 0.00 0.00 0.00 4.81
2380 5895 0.328258 CTTAGGGTTCAGGGTGTGGG 59.672 60.000 0.00 0.00 0.00 4.61
2383 5899 4.348020 TCTATCTTAGGGTTCAGGGTGT 57.652 45.455 0.00 0.00 0.00 4.16
2473 5989 1.646912 TGGGTTGGGTCAGTCGATTA 58.353 50.000 0.00 0.00 0.00 1.75
2483 6000 3.178046 ACTTTTCAGTTTTGGGTTGGGT 58.822 40.909 0.00 0.00 0.00 4.51
2484 6001 3.196685 TGACTTTTCAGTTTTGGGTTGGG 59.803 43.478 0.00 0.00 31.22 4.12
2485 6002 4.432712 CTGACTTTTCAGTTTTGGGTTGG 58.567 43.478 0.00 0.00 43.95 3.77
2530 6047 4.035558 CGGCATGCACTACACATTTTATCT 59.964 41.667 21.36 0.00 0.00 1.98
2602 6119 5.266733 ACATGAGTTGCACATTTTGTTCT 57.733 34.783 0.00 0.00 0.00 3.01
2656 6174 9.449719 GAAATTCAAAGGAGATCCAAACTAGTA 57.550 33.333 0.00 0.00 38.89 1.82
2674 6192 5.009510 TCTCCAAATTCACAGCGAAATTCAA 59.990 36.000 0.00 0.00 37.12 2.69
2685 6205 5.068855 TGCATTCAAAGTCTCCAAATTCACA 59.931 36.000 0.00 0.00 0.00 3.58
2705 6225 2.530460 TAACAGATGGGCCTTTGCAT 57.470 45.000 4.53 0.00 40.13 3.96
2787 6307 9.560860 TGGGTGTAATTGGTATCTCTATGATAT 57.439 33.333 0.00 0.00 39.56 1.63
2788 6308 8.966155 TGGGTGTAATTGGTATCTCTATGATA 57.034 34.615 0.00 0.00 36.65 2.15
2789 6309 7.527868 GCTGGGTGTAATTGGTATCTCTATGAT 60.528 40.741 0.00 0.00 39.11 2.45
2790 6310 6.239600 GCTGGGTGTAATTGGTATCTCTATGA 60.240 42.308 0.00 0.00 0.00 2.15
2791 6311 5.934625 GCTGGGTGTAATTGGTATCTCTATG 59.065 44.000 0.00 0.00 0.00 2.23
2792 6312 5.013183 GGCTGGGTGTAATTGGTATCTCTAT 59.987 44.000 0.00 0.00 0.00 1.98
2793 6313 4.347000 GGCTGGGTGTAATTGGTATCTCTA 59.653 45.833 0.00 0.00 0.00 2.43
2794 6314 3.136626 GGCTGGGTGTAATTGGTATCTCT 59.863 47.826 0.00 0.00 0.00 3.10
2795 6315 3.136626 AGGCTGGGTGTAATTGGTATCTC 59.863 47.826 0.00 0.00 0.00 2.75
2796 6316 3.123273 AGGCTGGGTGTAATTGGTATCT 58.877 45.455 0.00 0.00 0.00 1.98
2797 6317 3.136626 AGAGGCTGGGTGTAATTGGTATC 59.863 47.826 0.00 0.00 0.00 2.24
2798 6318 3.117888 CAGAGGCTGGGTGTAATTGGTAT 60.118 47.826 0.00 0.00 0.00 2.73
2799 6319 2.238646 CAGAGGCTGGGTGTAATTGGTA 59.761 50.000 0.00 0.00 0.00 3.25
2800 6320 1.004745 CAGAGGCTGGGTGTAATTGGT 59.995 52.381 0.00 0.00 0.00 3.67
2801 6321 1.755179 CAGAGGCTGGGTGTAATTGG 58.245 55.000 0.00 0.00 0.00 3.16
2802 6322 1.098050 GCAGAGGCTGGGTGTAATTG 58.902 55.000 0.00 0.00 36.96 2.32
2803 6323 0.698238 TGCAGAGGCTGGGTGTAATT 59.302 50.000 0.00 0.00 41.91 1.40
2804 6324 0.035056 GTGCAGAGGCTGGGTGTAAT 60.035 55.000 0.00 0.00 41.91 1.89
2805 6325 1.127567 AGTGCAGAGGCTGGGTGTAA 61.128 55.000 0.00 0.00 41.91 2.41
2806 6326 0.252057 TAGTGCAGAGGCTGGGTGTA 60.252 55.000 0.00 0.00 41.91 2.90
2807 6327 1.127567 TTAGTGCAGAGGCTGGGTGT 61.128 55.000 0.00 0.00 41.91 4.16
2808 6328 0.674895 GTTAGTGCAGAGGCTGGGTG 60.675 60.000 0.00 0.00 41.91 4.61
2809 6329 1.127567 TGTTAGTGCAGAGGCTGGGT 61.128 55.000 0.00 0.00 41.91 4.51
2810 6330 0.036732 TTGTTAGTGCAGAGGCTGGG 59.963 55.000 0.00 0.00 41.91 4.45
2811 6331 1.896220 TTTGTTAGTGCAGAGGCTGG 58.104 50.000 0.00 0.00 41.91 4.85
2812 6332 3.254166 ACATTTTGTTAGTGCAGAGGCTG 59.746 43.478 0.00 0.00 41.91 4.85
2813 6333 3.490348 ACATTTTGTTAGTGCAGAGGCT 58.510 40.909 0.00 0.00 41.91 4.58
2814 6334 3.253188 TGACATTTTGTTAGTGCAGAGGC 59.747 43.478 0.00 0.00 41.68 4.70
2815 6335 4.275689 TGTGACATTTTGTTAGTGCAGAGG 59.724 41.667 0.00 0.00 0.00 3.69
2816 6336 5.422666 TGTGACATTTTGTTAGTGCAGAG 57.577 39.130 0.00 0.00 0.00 3.35
2817 6337 5.826601 TTGTGACATTTTGTTAGTGCAGA 57.173 34.783 0.00 0.00 0.00 4.26
2818 6338 5.052436 CGTTTGTGACATTTTGTTAGTGCAG 60.052 40.000 0.00 0.00 0.00 4.41
2819 6339 4.795795 CGTTTGTGACATTTTGTTAGTGCA 59.204 37.500 0.00 0.00 0.00 4.57
2820 6340 5.031578 TCGTTTGTGACATTTTGTTAGTGC 58.968 37.500 0.00 0.00 0.00 4.40
2821 6341 6.024664 TGTCGTTTGTGACATTTTGTTAGTG 58.975 36.000 0.00 0.00 43.62 2.74
2822 6342 6.184580 TGTCGTTTGTGACATTTTGTTAGT 57.815 33.333 0.00 0.00 43.62 2.24
2833 6353 3.307242 GCATCCTAGATGTCGTTTGTGAC 59.693 47.826 6.46 0.00 39.37 3.67
2834 6354 3.056179 TGCATCCTAGATGTCGTTTGTGA 60.056 43.478 6.46 0.00 0.00 3.58
2835 6355 3.062639 GTGCATCCTAGATGTCGTTTGTG 59.937 47.826 6.46 0.00 0.00 3.33
2836 6356 3.262420 GTGCATCCTAGATGTCGTTTGT 58.738 45.455 6.46 0.00 0.00 2.83
2837 6357 3.062639 GTGTGCATCCTAGATGTCGTTTG 59.937 47.826 6.46 0.00 0.00 2.93
2838 6358 3.262420 GTGTGCATCCTAGATGTCGTTT 58.738 45.455 6.46 0.00 0.00 3.60
2839 6359 2.233676 TGTGTGCATCCTAGATGTCGTT 59.766 45.455 6.46 0.00 0.00 3.85
2840 6360 1.824852 TGTGTGCATCCTAGATGTCGT 59.175 47.619 6.46 0.00 0.00 4.34
2841 6361 2.467838 CTGTGTGCATCCTAGATGTCG 58.532 52.381 6.46 0.00 0.00 4.35
2842 6362 2.208431 GCTGTGTGCATCCTAGATGTC 58.792 52.381 6.46 0.46 42.31 3.06
2843 6363 1.134280 GGCTGTGTGCATCCTAGATGT 60.134 52.381 6.46 0.00 45.15 3.06
2844 6364 1.140452 AGGCTGTGTGCATCCTAGATG 59.860 52.381 0.00 0.09 39.27 2.90
2845 6365 1.504912 AGGCTGTGTGCATCCTAGAT 58.495 50.000 0.00 0.00 39.27 1.98
2846 6366 2.159179 TAGGCTGTGTGCATCCTAGA 57.841 50.000 0.00 0.00 41.14 2.43
2847 6367 2.988010 TTAGGCTGTGTGCATCCTAG 57.012 50.000 0.00 0.00 42.39 3.02
2848 6368 3.263170 TCTTTTAGGCTGTGTGCATCCTA 59.737 43.478 0.00 0.00 41.14 2.94
2849 6369 2.040278 TCTTTTAGGCTGTGTGCATCCT 59.960 45.455 0.00 0.00 43.10 3.24
2850 6370 2.436417 TCTTTTAGGCTGTGTGCATCC 58.564 47.619 0.00 0.00 45.15 3.51
2851 6371 4.503741 TTTCTTTTAGGCTGTGTGCATC 57.496 40.909 0.00 0.00 45.15 3.91
2852 6372 4.935352 TTTTCTTTTAGGCTGTGTGCAT 57.065 36.364 0.00 0.00 45.15 3.96
2853 6373 4.727507 TTTTTCTTTTAGGCTGTGTGCA 57.272 36.364 0.00 0.00 45.15 4.57
2871 6391 9.658799 CTTTTCTTCCTTTTCTTCTTCCTTTTT 57.341 29.630 0.00 0.00 0.00 1.94
2872 6392 8.260818 CCTTTTCTTCCTTTTCTTCTTCCTTTT 58.739 33.333 0.00 0.00 0.00 2.27
2873 6393 7.633772 GCCTTTTCTTCCTTTTCTTCTTCCTTT 60.634 37.037 0.00 0.00 0.00 3.11
2874 6394 6.183360 GCCTTTTCTTCCTTTTCTTCTTCCTT 60.183 38.462 0.00 0.00 0.00 3.36
2875 6395 5.303078 GCCTTTTCTTCCTTTTCTTCTTCCT 59.697 40.000 0.00 0.00 0.00 3.36
2876 6396 5.509840 GGCCTTTTCTTCCTTTTCTTCTTCC 60.510 44.000 0.00 0.00 0.00 3.46
2877 6397 5.533482 GGCCTTTTCTTCCTTTTCTTCTTC 58.467 41.667 0.00 0.00 0.00 2.87
2878 6398 5.537300 GGCCTTTTCTTCCTTTTCTTCTT 57.463 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.